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Conserved domains on  [gi|1027775114|ref|WP_063706820|]
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MULTISPECIES: ABC transporter permease subunit [Pseudoalteromonas]

Protein Classification

ABC transporter permease( domain architecture ID 11467926)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0140359|GO:0042626|GO:0043190|GO:0016020
PubMed:  17723295|2229036|18535149|25750732|24638992|16375896|1970642
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
1-337 2.22e-134

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


:

Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 385.34  E-value: 2.22e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114   1 MILdYILRRFALLMFMMLTLSIFTFSLSFLFPGDALTNLSGITnstfsqtsaledkfhftdnyvvQYFAFLDRILHGDWG 80
Cdd:COG4168     1 MLI-YLLRRLNLLLITLLILSLISFSLLYRDPLNPLSDASLFS----------------------GYLFYLQNLLQGDFG 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114  81 VSFASGESVFQHIKDLFPATLELSVYALFVSVAVGVPAGILASAYYKRWPDKFINSGTLIGYSMPVFWLALLLIMVFSLQ 160
Cdd:COG4168    58 ISSINGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSLLGFSIPVFWLALLLILFFSLN 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 161 LGWFPMSGRMGLLYEIEPVTGFILIDIIVDDFPYHGMAFLDALHHLTLPTIVLAMYPTTVLVRFTRDSMLKVLDQSYIKT 240
Cdd:COG4168   138 LGWLPVSGRYNLLYEIPPVTGFALIDAWLSDSPYRLKAIQSALQHLILPTLVLAVAPTTEVIRLTRQSTEEVMNQNYIKA 217

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 241 ARAKGLNRAQLIIHHALRNALLPVIKQIGLQFSTLITLAMITEVIFSWPGIGRWLIDSIYQRDYPAIQGGLLAVSMFVIL 320
Cdd:COG4168   218 AATRGLSRFTIIRRHVLRNALPPIIPQLGLQFSTMLTLAMITEVVFSWPGIGRWLINAIRQQDYAAISAGVIVIGTFVII 297

                         330
                  ....*....|....*..
gi 1027775114 321 ATIIAELTYTLFDPLSR 337
Cdd:COG4168   298 VNILSDILGALLNPLKR 314
 
Name Accession Description Interval E-value
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
1-337 2.22e-134

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 385.34  E-value: 2.22e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114   1 MILdYILRRFALLMFMMLTLSIFTFSLSFLFPGDALTNLSGITnstfsqtsaledkfhftdnyvvQYFAFLDRILHGDWG 80
Cdd:COG4168     1 MLI-YLLRRLNLLLITLLILSLISFSLLYRDPLNPLSDASLFS----------------------GYLFYLQNLLQGDFG 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114  81 VSFASGESVFQHIKDLFPATLELSVYALFVSVAVGVPAGILASAYYKRWPDKFINSGTLIGYSMPVFWLALLLIMVFSLQ 160
Cdd:COG4168    58 ISSINGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSLLGFSIPVFWLALLLILFFSLN 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 161 LGWFPMSGRMGLLYEIEPVTGFILIDIIVDDFPYHGMAFLDALHHLTLPTIVLAMYPTTVLVRFTRDSMLKVLDQSYIKT 240
Cdd:COG4168   138 LGWLPVSGRYNLLYEIPPVTGFALIDAWLSDSPYRLKAIQSALQHLILPTLVLAVAPTTEVIRLTRQSTEEVMNQNYIKA 217

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 241 ARAKGLNRAQLIIHHALRNALLPVIKQIGLQFSTLITLAMITEVIFSWPGIGRWLIDSIYQRDYPAIQGGLLAVSMFVIL 320
Cdd:COG4168   218 AATRGLSRFTIIRRHVLRNALPPIIPQLGLQFSTMLTLAMITEVVFSWPGIGRWLINAIRQQDYAAISAGVIVIGTFVII 297

                         330
                  ....*....|....*..
gi 1027775114 321 ATIIAELTYTLFDPLSR 337
Cdd:COG4168   298 VNILSDILGALLNPLKR 314
PRK15110 PRK15110
peptide ABC transporter permease SapB;
1-335 5.03e-97

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 290.44  E-value: 5.03e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114   1 MILdYILRRFALLMFMMLTLSIFTFSLSFLFPGDALtnlsgitnstfsQTSALEDKFHFtdnyvvqyfaFLDRILHGDWG 80
Cdd:PRK15110    1 MII-FTLRRLLLLIVTLFLLTLVGFSLSYFTPHAPL------------QGASLWDAWVF----------WFNGLLHWDFG 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114  81 VSFASGESVFQHIKDLFPATLELSVYALFVSVAVGVPAGILASAYYKRWPDKFINSGTLIGYSMPVFWLALLLIMVFSLQ 160
Cdd:PRK15110   58 VSSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLALLLTLFFSLT 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 161 LGWFPMSGRMGLLYEIEPVTGFILIDIIVDDFPYHGMAFLDALHHLTLPTIVLAMYPTTVLVRFTRDSMLKVLDQSYIKT 240
Cdd:PRK15110  138 LGWLPVSGRFDLLYEVKPVTGFALIDAWLSDSPWRDEMIMSAIRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKA 217

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 241 ARAKGLNRAQLIIHHALRNALLPVIKQIGLQFSTLITLAMITEVIFSWPGIGRWLIDSIYQRDYPAIQGGLLAVSMFVIL 320
Cdd:PRK15110  218 AATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVII 297

                         330
                  ....*....|....*
gi 1027775114 321 ATIIAELTYTLFDPL 335
Cdd:PRK15110  298 VNVLSDILGAMANPL 312
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 2-337 3.97e-64

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 205.76  E-value: 3.97e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114   2 ILDYILRRFALLMFMMLTLSIFTFSLSFLFPGD-ALTNLSgiTNSTFSQTSALEDKFH---FTDNYVVQYFAFLDRILHG 77
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDpAEDYLR--LSHIPPTDEAIADMRHslgLDQPLYVQYFHWLWNALHL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114  78 DWGVSFASGESVFQHIKDLFPATLELSVYALFVSVAVGVPAGILASAYYKRWPDKFINSGTLIGYSMPVFWLALLLIMVF 157
Cdd:TIGR02789  79 DFGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 158 SLQLGWFPMSGRMGllyeiepvtgfilidiivddfpyhgmafldaLHHLTLPTIVLAMYPTTVLVRFTRDSMLKVLDQSY 237
Cdd:TIGR02789 159 SVYLNLLPTNGAGT-------------------------------WQHLVLPAVTLALMSVSIYARLLRASMLDNMQERY 207

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 238 IKTARAKGLNRAQLIIHHALRNALLPVIKQIGLQFSTLITLAMITEVIFSWPGIGRWLIDSIYQRDYPAIQGGLLAVSMF 317
Cdd:TIGR02789 208 VTYARVRGIKERWVIRRHILRNAILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLL 287

                         330       340
                  ....*....|....*....|
gi 1027775114 318 VILATIIAELTYTLFDPLSR 337
Cdd:TIGR02789 288 FVFCNLIVDLFQALLDPRIR 307
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 115-334 1.14e-24

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 98.53  E-value: 1.14e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 115 GVPAGILASAYYKRWPDKFINSGTLIGYSMPVFWLALLLIMVFslqlgwfpmsgrmgllyeiepvtgfilidiivddfpy 194
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA------------------------------------- 43

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 195 hgmaFLDALHHLTLPTIVLAMYPTTVLVRFTRDSMLKVLDQSYIKTARAKGLNRAQLIIHHALRNALLPVIKQIGLQFST 274
Cdd:pfam00528  44 ----ILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGG 119

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 275 LITLAMITEVIFSWPGIGRWLIDSIYQRDYPAIQGGLLAVSMFVILATIIAELTYTLFDP 334
Cdd:pfam00528 120 ALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDP 179
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 97-320 8.68e-18

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 80.02  E-value: 8.68e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114  97 FPATLELSVYALFVSVAVGVPAGILAsAYYKRWPDKFINSGTLIGYSMPVFWLALLLIMVFSLQLGWfpmsgrmgllyei 176
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIIL-ARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------------- 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 177 epvtgfilidiivddfpyhgmaflDALHHLTLPTIVLAMYPTTVLVRFTRDSMLKVLDQSYIKTARAKGLNRAQLIIHHA 256
Cdd:cd06261    67 ------------------------GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRII 122

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1027775114 257 LRNALLPVIKQIGLQFSTLITLAMITEVIFS----WPGIGRWLIDSIYQRDYPAIQGGLLAVSMFVIL 320
Cdd:cd06261   123 LPLALPPILTGLVLAFARALGEFALVSFLGGgeapGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
 
Name Accession Description Interval E-value
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
1-337 2.22e-134

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 385.34  E-value: 2.22e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114   1 MILdYILRRFALLMFMMLTLSIFTFSLSFLFPGDALTNLSGITnstfsqtsaledkfhftdnyvvQYFAFLDRILHGDWG 80
Cdd:COG4168     1 MLI-YLLRRLNLLLITLLILSLISFSLLYRDPLNPLSDASLFS----------------------GYLFYLQNLLQGDFG 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114  81 VSFASGESVFQHIKDLFPATLELSVYALFVSVAVGVPAGILASAYYKRWPDKFINSGTLIGYSMPVFWLALLLIMVFSLQ 160
Cdd:COG4168    58 ISSINGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSLLGFSIPVFWLALLLILFFSLN 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 161 LGWFPMSGRMGLLYEIEPVTGFILIDIIVDDFPYHGMAFLDALHHLTLPTIVLAMYPTTVLVRFTRDSMLKVLDQSYIKT 240
Cdd:COG4168   138 LGWLPVSGRYNLLYEIPPVTGFALIDAWLSDSPYRLKAIQSALQHLILPTLVLAVAPTTEVIRLTRQSTEEVMNQNYIKA 217

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 241 ARAKGLNRAQLIIHHALRNALLPVIKQIGLQFSTLITLAMITEVIFSWPGIGRWLIDSIYQRDYPAIQGGLLAVSMFVIL 320
Cdd:COG4168   218 AATRGLSRFTIIRRHVLRNALPPIIPQLGLQFSTMLTLAMITEVVFSWPGIGRWLINAIRQQDYAAISAGVIVIGTFVII 297

                         330
                  ....*....|....*..
gi 1027775114 321 ATIIAELTYTLFDPLSR 337
Cdd:COG4168   298 VNILSDILGALLNPLKR 314
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 5-334 7.50e-108

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 317.39  E-value: 7.50e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114   5 YILRRFALLMFMMLTLSIFTFSLSFLFPGDALTNLSGiTNSTFSQTSALEDKFHFTDNYVVQYFAFLDRILHGDWGVSFA 84
Cdd:COG0601     4 YILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLG-PRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSFV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114  85 SGESVFQHIKDLFPATLELSVYALFVSVAVGVPAGILASAYYKRWPDKFINSGTLIGYSMPVFWLALLLIMVFSLQLGWF 164
Cdd:COG0601    83 YGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLGWL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 165 PMSGRMGLLyeiepvtgfilidiivddfpyhgMAFLDALHHLTLPTIVLAMYPTTVLVRFTRDSMLKVLDQSYIKTARAK 244
Cdd:COG0601   163 PVSGRVSPW-----------------------EDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAK 219

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 245 GLNRAQLIIHHALRNALLPVIKQIGLQFSTLITLAMITEVIFSWPGIGRWLIDSIYQRDYPAIQGGLLAVSMFVILATII 324
Cdd:COG0601   220 GLSERRVLLRHALRNALIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLL 299

                         330
                  ....*....|
gi 1027775114 325 AELTYTLFDP 334
Cdd:COG0601   300 VDLLYALLDP 309
PRK15110 PRK15110
peptide ABC transporter permease SapB;
1-335 5.03e-97

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 290.44  E-value: 5.03e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114   1 MILdYILRRFALLMFMMLTLSIFTFSLSFLFPGDALtnlsgitnstfsQTSALEDKFHFtdnyvvqyfaFLDRILHGDWG 80
Cdd:PRK15110    1 MII-FTLRRLLLLIVTLFLLTLVGFSLSYFTPHAPL------------QGASLWDAWVF----------WFNGLLHWDFG 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114  81 VSFASGESVFQHIKDLFPATLELSVYALFVSVAVGVPAGILASAYYKRWPDKFINSGTLIGYSMPVFWLALLLIMVFSLQ 160
Cdd:PRK15110   58 VSSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLALLLTLFFSLT 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 161 LGWFPMSGRMGLLYEIEPVTGFILIDIIVDDFPYHGMAFLDALHHLTLPTIVLAMYPTTVLVRFTRDSMLKVLDQSYIKT 240
Cdd:PRK15110  138 LGWLPVSGRFDLLYEVKPVTGFALIDAWLSDSPWRDEMIMSAIRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKA 217

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 241 ARAKGLNRAQLIIHHALRNALLPVIKQIGLQFSTLITLAMITEVIFSWPGIGRWLIDSIYQRDYPAIQGGLLAVSMFVIL 320
Cdd:PRK15110  218 AATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVII 297

                         330
                  ....*....|....*
gi 1027775114 321 ATIIAELTYTLFDPL 335
Cdd:PRK15110  298 VNVLSDILGAMANPL 312
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
2-339 8.76e-85

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 259.74  E-value: 8.76e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114   2 ILDYILRRFALLMFMMLTLSIFTFSLSFLFPGDALTNLSGITNSTFSQTSALEDKFHFTDNYVVQYFAFLDRILHGDWGV 81
Cdd:PRK10914    1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114  82 SFASGESVFQHIKDLFPATLELSVYALFVSVAVGVPAGILASAYYKRWPDKFINSGTLIGYSMPVFWLALLLIMVFSLQL 161
Cdd:PRK10914   81 SLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 162 GWFPMSGRMG---LLYEIEPVTGFILIDIIVDDFPYHgmaFLDALHHLTLPTIVLAMYPTTVLVRFTRDSMLKVLDQSYI 238
Cdd:PRK10914  161 NLTPVSGRVSdmvFLDDSNPLTGFMLIDTAIWGEDGN---FIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYI 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 239 KTARAKGLNRAQLIIHHALRNALLPVIKQIGLQFSTLITLAMITEVIFSWPGIGRWLIDSIYQRDYPAIQGGLLAVSMFV 318
Cdd:PRK10914  238 RTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMI 317

                         330       340
                  ....*....|....*....|.
gi 1027775114 319 ILATIIAELTYTLFDPLSRNQ 339
Cdd:PRK10914  318 ILVNLLVDLLYGVVNPRIRHK 338
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 2-337 3.97e-64

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 205.76  E-value: 3.97e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114   2 ILDYILRRFALLMFMMLTLSIFTFSLSFLFPGD-ALTNLSgiTNSTFSQTSALEDKFH---FTDNYVVQYFAFLDRILHG 77
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDpAEDYLR--LSHIPPTDEAIADMRHslgLDQPLYVQYFHWLWNALHL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114  78 DWGVSFASGESVFQHIKDLFPATLELSVYALFVSVAVGVPAGILASAYYKRWPDKFINSGTLIGYSMPVFWLALLLIMVF 157
Cdd:TIGR02789  79 DFGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 158 SLQLGWFPMSGRMGllyeiepvtgfilidiivddfpyhgmafldaLHHLTLPTIVLAMYPTTVLVRFTRDSMLKVLDQSY 237
Cdd:TIGR02789 159 SVYLNLLPTNGAGT-------------------------------WQHLVLPAVTLALMSVSIYARLLRASMLDNMQERY 207

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 238 IKTARAKGLNRAQLIIHHALRNALLPVIKQIGLQFSTLITLAMITEVIFSWPGIGRWLIDSIYQRDYPAIQGGLLAVSMF 317
Cdd:TIGR02789 208 VTYARVRGIKERWVIRRHILRNAILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLL 287

                         330       340
                  ....*....|....*....|
gi 1027775114 318 VILATIIAELTYTLFDPLSR 337
Cdd:TIGR02789 288 FVFCNLIVDLFQALLDPRIR 307
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 2-337 3.91e-61

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 198.00  E-value: 3.91e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114   2 ILDYILRRFALLMFMMLTLSIFTFSLSFLFPGD---ALTNLSGITNSTFSQTSALEdKFHFTDNYVVQYFAFLDRILHGD 78
Cdd:PRK10352    1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDpalDYLRLSNLPPTPEMLASTRT-MLGLDQPLYVQYGTWLWKALHLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114  79 WGVSFASGESVFQHIKDLFPATLELSVYALFVSVAVGVPAGILASAYYKRWPDKFINSGTLIGYSMPVFWLALLLIMVFS 158
Cdd:PRK10352   80 FGISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 159 LQLGWFPMSGRMGllyeiepvtgfilidiivddfpyhgmafldaLHHLTLPTIVLAMYPTTVLVRFTRDSMLKVLDQSYI 238
Cdd:PRK10352  160 VYLQWLPAMGYGG-------------------------------WQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHV 208

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 239 KTARAKGLNRAQLIIHHALRNALLPVIKQIGLQFSTLITLAMITEVIFSWPGIGRWLIDSIYQRDYPAIQGGLLAVSMFV 318
Cdd:PRK10352  209 TWARLRGLSERQVERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVF 288

                         330
                  ....*....|....*....
gi 1027775114 319 ILATIIAELTYTLFDPLSR 337
Cdd:PRK10352  289 VVCNLIVDLLNAALDPRIR 307
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 2-337 1.84e-56

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 185.69  E-value: 1.84e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114   2 ILDYILRRFALLMFMMLTLSIFTFSLSFLFPGDALTNLSGitNSTFSQTSALEDKFHFTDNYVVQYFA-FLDRILHGDWG 80
Cdd:PRK15081    1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLAAG--PEADAQVVALVRQQLGLDQPLPHQFWhYISNALQGDFG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114  81 VSFASGESVFQHIKDLFPATLELSVYALFVSVAVGVPAGILASAYYKRWPDKFINSGTLIGYSMPVFWLALLLIMVFSLQ 160
Cdd:PRK15081   79 TSMVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVE 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 161 LGWFPMSGRmgllyeiepvtgfilidiivddfpyhgmaflDALHHLTLPTIVLAMYPTTVLVRFTRDSMLKVLDQSYIKT 240
Cdd:PRK15081  159 LGWLPTVGA-------------------------------DSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRT 207

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 241 ARAKGLNRAQLIIHHALRNALLPVIKQIGLQFSTLITLAMITEVIFSWPGIGRWLIDSIYQRDYPAIQGGLLAVSMFVIL 320
Cdd:PRK15081  208 ARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFIL 287

                         330
                  ....*....|....*..
gi 1027775114 321 ATIIAELTYTLFDPLSR 337
Cdd:PRK15081  288 INLVVDVLYAAINPAIR 304
oppB PRK09471
oligopeptide ABC transporter permease OppB;
2-337 8.76e-44

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 152.91  E-value: 8.76e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114   2 ILDYILRRFALLMFMMLTLSIFTFSLSFLFPGDALTNLSGITNSTFSQtsaLEDKFHFTDNYVVQYFAFLDRILHGDWGV 81
Cdd:PRK09471    1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMAN---IEAKYHLNDPIMTQYFSYLKQLAHGDFGP 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114  82 SFASGE-SVFQHIKDLFPATLELSVYALFVSVAVGVPAGILASAYYKRWPDKFINSGTLIGYSMPVFWLALLLIMVFSLQ 160
Cdd:PRK09471   78 SFKYKDySVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAIT 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 161 LGWFPMSGRMGllyeiepvtgfilidiivddfpyhgmaflDALHHLTLPTIVLAMYPTTVLVRFTRDSMLKVLDQSYIKT 240
Cdd:PRK09471  158 LHWLPGGGWNG-----------------------------GALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRT 208

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 241 ARAKGLNRAQLIIHHALRNALLPVIKQIGLQFSTLITLAMITEVIFSWPGIGRWLIDSIYQRDYPAIQGGLLAVSMFVIL 320
Cdd:PRK09471  209 ARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTIL 288

                         330
                  ....*....|....*..
gi 1027775114 321 ATIIAELTYTLFDPLSR 337
Cdd:PRK09471  289 FNAIVDVLYAVIDPKIR 305
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 66-334 6.40e-33

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 125.24  E-value: 6.40e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114  66 QYFAFLDRILHGDWGVSFASGESVFQHIKDLFPATLELSVYALFVSVAVGVPAGILASAY----YKRWPDKFInsgtLIG 141
Cdd:PRK15133  102 RYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVRngsrFDVWSSAFI----IIG 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 142 YSMPVFWLALLLIMVFS--LQLGWFPMSGrmgllyeiepvtgfiLIDIIVDDFPYHGmAFLDALHHLTLPTIVLAMYPTT 219
Cdd:PRK15133  178 YAIPAFLFAILLIVFFAggSYFDLFPLRG---------------LVSANFDSLPWYQ-KITDYLWHITLPVLATVIGGFA 241

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 220 VLVRFTRDSMLKVLDQSYIKTARAKGLNRAQLIIHHALRNALLPVIKQIGLQF-STLITLAMITEVIFSWPGIGRWLIDS 298
Cdd:PRK15133  242 ALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFiSMFFTGSLLIEVMFSLNGLGLLGYEA 321

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1027775114 299 IYQRDYPAIQGGLLAVSMFVILATIIAELTYTLFDP 334
Cdd:PRK15133  322 TVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDP 357
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 5-334 3.42e-31

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 120.68  E-value: 3.42e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114   5 YILRRFALLMFMMLTLSIFTFSLSFLFPG---------------DALTNLSGITNSTFSQTSA----------------- 52
Cdd:COG4174     4 YILRRLLLMIPTLLGIMLINFVIVQFAPGgpveqviaqlqgtggGATGRISGGGGDAGGGAAAgggskyrgargldpefi 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114  53 --LEDKFHFTDNYVVQYFAFLDRILHGDWGVSFASGESVFQHIKDLFPATLELSVYALFVSVAVGVPAGILASAYYKRWP 130
Cdd:COG4174    84 aeLEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIRKAVRDGSRF 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 131 DKFINSGTLIGYSMPVFWLALLLIMVFS----LQlgWFPMSGrmgllyeiepvtgfiLIDIIVDDFPYHGMAfLDALHHL 206
Cdd:COG4174   164 DVWTSTVIIVGYAIPGFLFAILLIVLFAggsyFD--WFPLRG---------------LTSDNWDQLSWWGKI-LDYLWHL 225

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 207 TLPTIVLAMYPTTVLVRFTRDSMLKVLDQSYIKTARAKGLNRAQLIIHHALRNALLPVIKQIGLQF-STLITLAMITEVI 285
Cdd:COG4174   226 TLPVTAMVIGGFATLTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIAGFPAAFiGAFFTGSLLIETI 305

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1027775114 286 FSWPGIGRWLIDSIYQRDYPAIQGGLLAVSMFVILATIIAELTYTLFDP 334
Cdd:COG4174   306 FSLDGLGLLGFEAVVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDP 354
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 115-334 1.14e-24

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 98.53  E-value: 1.14e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 115 GVPAGILASAYYKRWPDKFINSGTLIGYSMPVFWLALLLIMVFslqlgwfpmsgrmgllyeiepvtgfilidiivddfpy 194
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA------------------------------------- 43

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 195 hgmaFLDALHHLTLPTIVLAMYPTTVLVRFTRDSMLKVLDQSYIKTARAKGLNRAQLIIHHALRNALLPVIKQIGLQFST 274
Cdd:pfam00528  44 ----ILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGG 119

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 275 LITLAMITEVIFSWPGIGRWLIDSIYQRDYPAIQGGLLAVSMFVILATIIAELTYTLFDP 334
Cdd:pfam00528 120 ALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDP 179
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 97-320 8.68e-18

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 80.02  E-value: 8.68e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114  97 FPATLELSVYALFVSVAVGVPAGILAsAYYKRWPDKFINSGTLIGYSMPVFWLALLLIMVFSLQLGWfpmsgrmgllyei 176
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIIL-ARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------------- 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 177 epvtgfilidiivddfpyhgmaflDALHHLTLPTIVLAMYPTTVLVRFTRDSMLKVLDQSYIKTARAKGLNRAQLIIHHA 256
Cdd:cd06261    67 ------------------------GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRII 122

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1027775114 257 LRNALLPVIKQIGLQFSTLITLAMITEVIFS----WPGIGRWLIDSIYQRDYPAIQGGLLAVSMFVIL 320
Cdd:cd06261   123 LPLALPPILTGLVLAFARALGEFALVSFLGGgeapGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 100-292 4.23e-07

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 50.50  E-value: 4.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 100 TLELSVYALFVSVAVGVPAGILAsAYYKRWPDKFINSGTLIGYSMPVFWLALLLIMVFSlqlgwfpmsgrmgllyeiepv 179
Cdd:COG1173    81 SLLVGLLAVLIALVIGVLLGLLA-GYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLG--------------------- 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114 180 TGFILIdiivddfpyhgmafldalhhltlpTIVLAMYPTTVLVRFTRDSMLKVLDQSYIKTARAKGLNRAQLIIHHALRN 259
Cdd:COG1173   139 PGLLNV------------------------ILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPN 194

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1027775114 260 ALLPVIKQIGLQFSTlitlAMITEVIFSWPGIG 292
Cdd:COG1173   195 VLPPLIVQATLGIAS----AILAEAGLSFLGLG 223
BPD_transp_1_N pfam19300
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ...
 3-104 2.18e-05

Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.


Pssm-ID: 437132 [Multi-domain]  Cd Length: 114  Bit Score: 42.98  E-value: 2.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027775114   3 LDYILRRFALLMFMMLTLSIFTFSLSFLFPGD-ALtnLSGITNSTfsqTSALEDKFH---FTDNYVVQYFAFLDRILHG- 77
Cdd:pfam19300   2 LRFLVRRTLGAVVILLIISAVTFFLFYAIPRDpAR--LACGKNCT---PETLALIRHnlgLDKPIPVQYWHFLSGIFAGr 76

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1027775114  78 --------DW---GVSFASGESVFQHIKDLFPATLELS 104
Cdd:pfam19300  77 dfgavghcPApclGYSFANNEPVWDTIMDRFPTTLSLA 114
PRK09881 PRK09881
D,D-dipeptide ABC transporter permease;
209-279 1.14e-04

D,D-dipeptide ABC transporter permease;


Pssm-ID: 182131 [Multi-domain]  Cd Length: 296  Bit Score: 43.27  E-value: 1.14e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1027775114 209 PTIVLAMYPTTVL-----VRFTRDSMLKVLDQSYIKTARAKGLNRAQLIIHHALRNALLPVIKQIGLQFSTLITLA 279
Cdd:PRK09881  154 PSLFNAMLAIAIVripfyVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMA 229
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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