|
Name |
Accession |
Description |
Interval |
E-value |
| DnrI |
COG3629 |
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain ... |
1-232 |
7.82e-55 |
|
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain [Transcription];
Pssm-ID: 442847 [Multi-domain] Cd Length: 244 Bit Score: 190.44 E-value: 7.82e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 1 MLRFTLLGPVQLIVDGEPLTGLAPRHRAVLAYLLLNSGRVISIERLIDAMWGYDQPDTARSQIHASITALRKVLRGAGAV 80
Cdd:COG3629 1 PLRFRLLGPLEVRVDGRPVPLGGPKQRALLAYLALRAGRPVSRDRLADLLWGDDPPASARANLRTYVSRLRRALGPAGGD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 81 qLLQTRAGGYVAQPEPGQVDTQEFTELVAAGE------------LREALDLWSGEAVEDVH-AQYVSGVRELWHDRRLSA 147
Cdd:COG3629 81 -LLVTRGGGYRLDVDPDEVDLHRFERLVARARaaagdpaaaaalLREALALWRGPPLAGLPfEPWLEAERARLEELRLAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 148 YERLVEAELAAGRHDDLLDELAAQVVADPLREKLTGHLVLALHRAGRQADALAAARSYRTALADEQGLDPGHAFTELERA 227
Cdd:COG3629 160 LEALAEALLALGRHAEALAELRRLVAAHPLRERLHRLLMRALYRAGRRAEALAAYRRLRRRLADELGVEPGPELRALHRR 239
|
....*
gi 1027875670 228 VLADD 232
Cdd:COG3629 240 ILRGD 244
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
107-949 |
5.05e-37 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 150.55 E-value: 5.05e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 107 LVAAGELREALDLWSGEAVEDVHAQYVSGVRELWHDRRLSAYERLVEAELAAGRHDDLLDELAAQVVADPLREKLTGHLV 186
Cdd:COG3903 1 AAAAAAAAAAAAAAALALLALAAAAAAAAAAAALAAALEALRAALALLLLLLAALALALAALALLLAAAALLLRLLLLLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 187 LALHRAGRQADALAAARSYRTALADEQGLDPGHAFTELERAVLADDPALRLAGTAQPAEPPQPAVARRSFLPYDIPDFSG 266
Cdd:COG3903 81 AARLLARLAAAAAAALARAAAAALALLLRLRLAARRLLLARALAAAALAAAAAAAAAAAAAPAPPPPAPPPPAPLAALAR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 267 RAAELERLVGE--RHGPVVTIDGMAGIGKTTLAVHVAHRLAARYPDGRLFIDLRAHTagrepvDAAAALEALLRQLGVPA 344
Cdd:COG3903 161 RAAALAAAARAllSAARLVTLTGPGGVGKTRLALEVAHRLADRFPDGVWFVDLAGVT------DPALVLAAVARALGVRD 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 345 DripvTLGERSALWRAELADRRVLAVLDNALD-----ADHVRPLLPGHSDTLVLVTSRRRLvALDGAQALSVDVLG---- 415
Cdd:COG3903 235 A----PGRDPAARLRAALADRRLLLVLDNCEHvvdaaAALVRPLLPAAPGLRVLATSREPL-GLPGERVLPLPPLAvppp 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 416 -----EQDAAGLFERIVGERARD------EPEAVGEVLRLCGHLPLAIRISAARLQHRPrwtVSYLAGRLRDHRRLLDG- 483
Cdd:COG3903 310 gaealASEAVALFVERAGAARPGfaldaaEAAAVAEICRRLDGLPLAIELAAARLRTLS---LAELAARLDDRLRLLTGg 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 484 ----------VSAAFALSYEQLDEAEQRMFRLFGLAPGRDIDPYGAAALAGIAEEEAEELLEGLLDAHMLLQLEPG---R 550
Cdd:COG3903 387 rrdapprhrtLRAALDWSYDLLSPAERRLLRRLSVFPGGFTLEAAEAVCGGDGPADVLDLLAALVDKSLLEVEGGGggpR 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 551 YTFHDLLREHARSMAEDDGTVPVLQ--LLTYYLHRSRAAVDRLFPdslshregipqpttpippiRDAEQAITWLDAERGN 628
Cdd:COG3903 467 YRLLETVREYAAERLAEAGERAAARrrHADYYLALAERAAAELRG-------------------PDQLAWLARLDAEHDN 527
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 629 IIATAVHGPEICVGMLALALRPYLDRQAHHDDALTLQTLALQRARKLGHAHRDFEVQALSDLAWTCWRLGEYERAEEHAH 708
Cdd:COG3903 528 LRAALRWALAHGDAELALRLAAALAPFWFLRGLLREGRRWLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAA 607
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 709 LALEACEEPYERARALLTLGNVALRRRQDKEAEQYLTQALDLTRIGADTWGEAHVLGILALVLDRAGRPRDARRHLDVAL 788
Cdd:COG3903 608 AAAAAAAAAAAAAAALLLLAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAAL 687
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 789 ALHRKVGNPAGEAVILNHLGVVLRHQGELAQARTRHEQAAALYRELGNTADEAAALNGLAEAAGDPARAVEEHADALALA 868
Cdd:COG3903 688 AAAAAALAAAAAAAALAAAAAAALAAAAAAAAAAAAAAALLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAA 767
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 869 LATRNRPEQARAHDGLARAHLGLGHSEHAGEHGRLALGLYEELGVPEAEEIRTFLMSDCRAAGVEGGLPPVERHAISRAV 948
Cdd:COG3903 768 AAAALAALLLALAAAAAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAALAAALAAAAAAAAAAAAA 847
|
.
gi 1027875670 949 G 949
Cdd:COG3903 848 A 848
|
|
| BTAD |
cd15831 |
Bacterial Transcriptional Activation (BTA) domain; The Bacterial Transcriptional Activation ... |
99-229 |
7.17e-26 |
|
Bacterial Transcriptional Activation (BTA) domain; The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.
Pssm-ID: 276938 [Multi-domain] Cd Length: 146 Bit Score: 104.22 E-value: 7.17e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 99 VDTQEFTELVAAG--------------ELREALDLWSGEAVEDVHAQ-YVSGVRELWHDRRLSAYERLVEAELAAGRHDD 163
Cdd:cd15831 1 VDLQRFERLVAEGrralaagdpeeaarLLRAALALWRGPALADVRAGpVLEAEAARLEELRLRALEARIEADLALGRHRE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1027875670 164 LLDELAAQVVADPLREKLTGHLVLALHRAGRQADALAAARSYRTALADEQGLDPGHAFTELERAVL 229
Cdd:cd15831 81 LVAELRALVAEHPLRERLHRQLMLALYRSGRQAEALRVYRRLRRRLAEELGVEPGPELRRLHQAIL 146
|
|
| BTAD |
pfam03704 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
99-229 |
1.38e-24 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 397662 [Multi-domain] Cd Length: 146 Bit Score: 100.43 E-value: 1.38e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 99 VDTQEFTELVAAG--------------ELREALDLWSGEAVEDVHAQ-YVSGVRELWHDRRLSAYERLVEAELAAGRHDD 163
Cdd:pfam03704 1 VDLARFERLVRAGraalaagdpaeaarLLRAALALWRGPALADLPAGpWLEAERARLEELRLEALEARAEADLRLGRHEE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1027875670 164 LLDELAAQVVADPLREKLTGHLVLALHRAGRQADALAAARSYRTALADEQGLDPGHAFTELERAVL 229
Cdd:pfam03704 81 ALPELEALVAAHPLRERLHRLLMLALYRSGRQAEALAVYRRLRRVLAEELGVEPGPELRRLHQEIL 146
|
|
| BTAD |
smart01043 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
109-229 |
1.31e-19 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 86.20 E-value: 1.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 109 AAGELREALDLWSGEAVEDVHAQ-YVSGVRELWHDRRLSAYERLVEAELAAGRHDDLLDELAAQVVADPLREKLTGHLVL 187
Cdd:smart01043 24 ALALLEAALALYRGPLLADVPDEdWAEAERERLRELRLEALEALAEALLALGRHEEALALLERLLALDPLRERLHRLLMR 103
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1027875670 188 ALHRAGRQADALAAARSYRTALADEQGLDPGHAFTELERAVL 229
Cdd:smart01043 104 ALYRAGRRAEALRAYRRLRRLLADELGVEPGPELRALYEAIL 145
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
262-860 |
9.11e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 82.27 E-value: 9.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 262 PDFSGRAAELERL-----VGERHGPVVTIDGMAGIGKTTLAVHVAHRLAARYpdgrlfiDLRAHTAGREPVDAAAALEAL 336
Cdd:NF040586 6 PNFTGREELLERLrdqlrSGGAAVVPQALHGLGGVGKTQLALEYAHRFRADY-------DLVWWIPADQPELVRASLAEL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 337 LRQLGVPADRIPVTLGERSALW--RAELADRRVLAVLDNALDADHVRPLLPGHSDTLVLVTSRRRLVALDGAQALSVDVL 414
Cdd:NF040586 79 ARRLGLPLGPDDVDEAARAVLDalRRGEPYRRWLLVFDNADDPEDLRDLLPTGGPGHVLITSRNRAWSEVAAATLEVDVF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 415 -GEQDAAGLFERIVGERARDEPEAVGEVLrlcGHLPLAIRISAARLQHRPRWTVSYLAgRLRDHRRLLDG---------- 483
Cdd:NF040586 159 sREESVALLRRRVPGLTSEEDADRLAEAL---GDLPLALEQAAAWLAETGMPVDEYLR-LLDEQATAALLlelkppgypt 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 484 -VSAAFALSYEQLDE---AEQRMFRLFG-LAP--------------GRDIDPYGAAALAGIAEEEAEELLEGLLDAHMLL 544
Cdd:NF040586 235 sVAATWRLSLDRLRErspAAARLLELCAfFGPepipldllrssdemARLLLPYDLRLRELLLDGILLSRALRELGRYALA 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 545 QLEPGRYTF------HDLLR------EHARSMAE---------------DDGTVPVLQLLTYYLHRSRAA------VDRL 591
Cdd:NF040586 315 RVDSGRRTLqvhrlvQAVLRdrlseeERARARHEvhrilaaaapgdepdDPRNWPRYAELWPHLEPSGALesddpeVRRL 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 592 FPDSLSHREgipqpttpipPIRDAEQAITWldAERGNIIATAVHGPE-----ICVGMLALALRpyldRQAHHDDALTL-- 664
Cdd:NF040586 395 LLDQVRYLY----------LRGDYESARDL--AERALERWRERLGPDdrqtlRLRFHLANALR----SLGRYEEARELde 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 665 QTLALQRARKLGHAHRDFEVQALSDLAWTCWRLGEYERAEEHAHLALEACEEPY--ERARALLTLGNVALRRR---QDKE 739
Cdd:NF040586 459 DTLERQRRVLGLGEDHPHTLMTAGGLGADLRALGRFREALELDEETLERHRRVFgeDHPRTLRAANNLAVSLRllgDYRE 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 740 AEQYLTQALDLTRigaDTWGEAHV-----LGILALVLDRAGRPRDARRHLDVALALHRKVGNPAGEAVILN---HLGVVL 811
Cdd:NF040586 539 ALELDREVLRRRR---RVLGPDHPrtllsANNLARDLRELGRYAEALDLLEEALERYREVLGGPDHPDTLRaakSLAVAL 615
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 1027875670 812 RHQGELAQARTRHEQAAALYREL--GNTADEAAALNGLA---EAAGDPARAVEE 860
Cdd:NF040586 616 RRAGRLEEALELAEDTYERYRRRfgPDHPDTLAAALSLAndlRALGDADEAREL 669
|
|
| NB-ARC |
pfam00931 |
NB-ARC domain; |
271-493 |
2.37e-07 |
|
NB-ARC domain;
Pssm-ID: 395745 [Multi-domain] Cd Length: 245 Bit Score: 52.77 E-value: 2.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 271 LERLVGERHGPVVTIDGMAGIGKTTLAVHVAHRLA---ARYpDGRLFIdlrahTAGREPVDAAAALEALLRQLGVPADRI 347
Cdd:pfam00931 9 IGKLSEKDEPGIVGIHGMGGVGKTTLAAQIFNDFDeveGHF-DSVAWV-----VVSKTFTISTLQQTILQNLGLSEDDWD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 348 PVTLGERSALWRAELADRRVLAVLDNALDA---DHVRPLLPGHSDTL-VLVTSRRRLVAlDGAQALS----VDVLGEQDA 419
Cdd:pfam00931 83 NKEEGELARKIRRALLTKRFLLVLDDVWDEedwDKIGIPLPDRENGCrVLLTTRSEEVA-GRVGGPSdpheVELLEPDEA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 420 AGLFERIVGERARDEPEAVGEVLR----LCGHLPLAIRISAARLQHR---PRWTVSY--LAGRLRDHRRLLDGVSAAFAL 490
Cdd:pfam00931 162 WELFENKVFPKTLGECELLEDVAKeiveKCRGLPLALKVLGGLLSCKktvEEWKHVYdvLQSELKSNSYSLNSVRSILQL 241
|
...
gi 1027875670 491 SYE 493
Cdd:pfam00931 242 SYE 244
|
|
| arsen_driv_ArsA |
TIGR04291 |
arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family ... |
233-307 |
1.09e-03 |
|
arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite).
Pssm-ID: 275109 [Multi-domain] Cd Length: 566 Bit Score: 42.77 E-value: 1.09e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1027875670 233 PALRLAGTAQPAEPPQPAVArrsFLPYDIPDFSGRAAELERlvgERHGPVVTIdGMAGIGKTTLAVHVAHRLAAR 307
Cdd:TIGR04291 281 EALRQLLNDDQPQLSLDITT---PQVPDLPSLSRLIDEIAK---SEKGLIMTM-GKGGVGKTTVAAAIAVRLANK 348
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DnrI |
COG3629 |
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain ... |
1-232 |
7.82e-55 |
|
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain [Transcription];
Pssm-ID: 442847 [Multi-domain] Cd Length: 244 Bit Score: 190.44 E-value: 7.82e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 1 MLRFTLLGPVQLIVDGEPLTGLAPRHRAVLAYLLLNSGRVISIERLIDAMWGYDQPDTARSQIHASITALRKVLRGAGAV 80
Cdd:COG3629 1 PLRFRLLGPLEVRVDGRPVPLGGPKQRALLAYLALRAGRPVSRDRLADLLWGDDPPASARANLRTYVSRLRRALGPAGGD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 81 qLLQTRAGGYVAQPEPGQVDTQEFTELVAAGE------------LREALDLWSGEAVEDVH-AQYVSGVRELWHDRRLSA 147
Cdd:COG3629 81 -LLVTRGGGYRLDVDPDEVDLHRFERLVARARaaagdpaaaaalLREALALWRGPPLAGLPfEPWLEAERARLEELRLAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 148 YERLVEAELAAGRHDDLLDELAAQVVADPLREKLTGHLVLALHRAGRQADALAAARSYRTALADEQGLDPGHAFTELERA 227
Cdd:COG3629 160 LEALAEALLALGRHAEALAELRRLVAAHPLRERLHRLLMRALYRAGRRAEALAAYRRLRRRLADELGVEPGPELRALHRR 239
|
....*
gi 1027875670 228 VLADD 232
Cdd:COG3629 240 ILRGD 244
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
107-949 |
5.05e-37 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 150.55 E-value: 5.05e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 107 LVAAGELREALDLWSGEAVEDVHAQYVSGVRELWHDRRLSAYERLVEAELAAGRHDDLLDELAAQVVADPLREKLTGHLV 186
Cdd:COG3903 1 AAAAAAAAAAAAAAALALLALAAAAAAAAAAAALAAALEALRAALALLLLLLAALALALAALALLLAAAALLLRLLLLLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 187 LALHRAGRQADALAAARSYRTALADEQGLDPGHAFTELERAVLADDPALRLAGTAQPAEPPQPAVARRSFLPYDIPDFSG 266
Cdd:COG3903 81 AARLLARLAAAAAAALARAAAAALALLLRLRLAARRLLLARALAAAALAAAAAAAAAAAAAPAPPPPAPPPPAPLAALAR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 267 RAAELERLVGE--RHGPVVTIDGMAGIGKTTLAVHVAHRLAARYPDGRLFIDLRAHTagrepvDAAAALEALLRQLGVPA 344
Cdd:COG3903 161 RAAALAAAARAllSAARLVTLTGPGGVGKTRLALEVAHRLADRFPDGVWFVDLAGVT------DPALVLAAVARALGVRD 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 345 DripvTLGERSALWRAELADRRVLAVLDNALD-----ADHVRPLLPGHSDTLVLVTSRRRLvALDGAQALSVDVLG---- 415
Cdd:COG3903 235 A----PGRDPAARLRAALADRRLLLVLDNCEHvvdaaAALVRPLLPAAPGLRVLATSREPL-GLPGERVLPLPPLAvppp 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 416 -----EQDAAGLFERIVGERARD------EPEAVGEVLRLCGHLPLAIRISAARLQHRPrwtVSYLAGRLRDHRRLLDG- 483
Cdd:COG3903 310 gaealASEAVALFVERAGAARPGfaldaaEAAAVAEICRRLDGLPLAIELAAARLRTLS---LAELAARLDDRLRLLTGg 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 484 ----------VSAAFALSYEQLDEAEQRMFRLFGLAPGRDIDPYGAAALAGIAEEEAEELLEGLLDAHMLLQLEPG---R 550
Cdd:COG3903 387 rrdapprhrtLRAALDWSYDLLSPAERRLLRRLSVFPGGFTLEAAEAVCGGDGPADVLDLLAALVDKSLLEVEGGGggpR 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 551 YTFHDLLREHARSMAEDDGTVPVLQ--LLTYYLHRSRAAVDRLFPdslshregipqpttpippiRDAEQAITWLDAERGN 628
Cdd:COG3903 467 YRLLETVREYAAERLAEAGERAAARrrHADYYLALAERAAAELRG-------------------PDQLAWLARLDAEHDN 527
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 629 IIATAVHGPEICVGMLALALRPYLDRQAHHDDALTLQTLALQRARKLGHAHRDFEVQALSDLAWTCWRLGEYERAEEHAH 708
Cdd:COG3903 528 LRAALRWALAHGDAELALRLAAALAPFWFLRGLLREGRRWLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAA 607
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 709 LALEACEEPYERARALLTLGNVALRRRQDKEAEQYLTQALDLTRIGADTWGEAHVLGILALVLDRAGRPRDARRHLDVAL 788
Cdd:COG3903 608 AAAAAAAAAAAAAAALLLLAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAAL 687
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 789 ALHRKVGNPAGEAVILNHLGVVLRHQGELAQARTRHEQAAALYRELGNTADEAAALNGLAEAAGDPARAVEEHADALALA 868
Cdd:COG3903 688 AAAAAALAAAAAAAALAAAAAAALAAAAAAAAAAAAAAALLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAA 767
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 869 LATRNRPEQARAHDGLARAHLGLGHSEHAGEHGRLALGLYEELGVPEAEEIRTFLMSDCRAAGVEGGLPPVERHAISRAV 948
Cdd:COG3903 768 AAAALAALLLALAAAAAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAALAAALAAAAAAAAAAAAA 847
|
.
gi 1027875670 949 G 949
Cdd:COG3903 848 A 848
|
|
| BTAD |
cd15831 |
Bacterial Transcriptional Activation (BTA) domain; The Bacterial Transcriptional Activation ... |
99-229 |
7.17e-26 |
|
Bacterial Transcriptional Activation (BTA) domain; The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.
Pssm-ID: 276938 [Multi-domain] Cd Length: 146 Bit Score: 104.22 E-value: 7.17e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 99 VDTQEFTELVAAG--------------ELREALDLWSGEAVEDVHAQ-YVSGVRELWHDRRLSAYERLVEAELAAGRHDD 163
Cdd:cd15831 1 VDLQRFERLVAEGrralaagdpeeaarLLRAALALWRGPALADVRAGpVLEAEAARLEELRLRALEARIEADLALGRHRE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1027875670 164 LLDELAAQVVADPLREKLTGHLVLALHRAGRQADALAAARSYRTALADEQGLDPGHAFTELERAVL 229
Cdd:cd15831 81 LVAELRALVAEHPLRERLHRQLMLALYRSGRQAEALRVYRRLRRRLAEELGVEPGPELRRLHQAIL 146
|
|
| BTAD |
pfam03704 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
99-229 |
1.38e-24 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 397662 [Multi-domain] Cd Length: 146 Bit Score: 100.43 E-value: 1.38e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 99 VDTQEFTELVAAG--------------ELREALDLWSGEAVEDVHAQ-YVSGVRELWHDRRLSAYERLVEAELAAGRHDD 163
Cdd:pfam03704 1 VDLARFERLVRAGraalaagdpaeaarLLRAALALWRGPALADLPAGpWLEAERARLEELRLEALEARAEADLRLGRHEE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1027875670 164 LLDELAAQVVADPLREKLTGHLVLALHRAGRQADALAAARSYRTALADEQGLDPGHAFTELERAVL 229
Cdd:pfam03704 81 ALPELEALVAAHPLRERLHRLLMLALYRSGRQAEALAVYRRLRRVLAEELGVEPGPELRRLHQEIL 146
|
|
| BTAD |
smart01043 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
109-229 |
1.31e-19 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 86.20 E-value: 1.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 109 AAGELREALDLWSGEAVEDVHAQ-YVSGVRELWHDRRLSAYERLVEAELAAGRHDDLLDELAAQVVADPLREKLTGHLVL 187
Cdd:smart01043 24 ALALLEAALALYRGPLLADVPDEdWAEAERERLRELRLEALEALAEALLALGRHEEALALLERLLALDPLRERLHRLLMR 103
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1027875670 188 ALHRAGRQADALAAARSYRTALADEQGLDPGHAFTELERAVL 229
Cdd:smart01043 104 ALYRAGRRAEALRAYRRLRRLLADELGVEPGPELRALYEAIL 145
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
262-860 |
9.11e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 82.27 E-value: 9.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 262 PDFSGRAAELERL-----VGERHGPVVTIDGMAGIGKTTLAVHVAHRLAARYpdgrlfiDLRAHTAGREPVDAAAALEAL 336
Cdd:NF040586 6 PNFTGREELLERLrdqlrSGGAAVVPQALHGLGGVGKTQLALEYAHRFRADY-------DLVWWIPADQPELVRASLAEL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 337 LRQLGVPADRIPVTLGERSALW--RAELADRRVLAVLDNALDADHVRPLLPGHSDTLVLVTSRRRLVALDGAQALSVDVL 414
Cdd:NF040586 79 ARRLGLPLGPDDVDEAARAVLDalRRGEPYRRWLLVFDNADDPEDLRDLLPTGGPGHVLITSRNRAWSEVAAATLEVDVF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 415 -GEQDAAGLFERIVGERARDEPEAVGEVLrlcGHLPLAIRISAARLQHRPRWTVSYLAgRLRDHRRLLDG---------- 483
Cdd:NF040586 159 sREESVALLRRRVPGLTSEEDADRLAEAL---GDLPLALEQAAAWLAETGMPVDEYLR-LLDEQATAALLlelkppgypt 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 484 -VSAAFALSYEQLDE---AEQRMFRLFG-LAP--------------GRDIDPYGAAALAGIAEEEAEELLEGLLDAHMLL 544
Cdd:NF040586 235 sVAATWRLSLDRLRErspAAARLLELCAfFGPepipldllrssdemARLLLPYDLRLRELLLDGILLSRALRELGRYALA 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 545 QLEPGRYTF------HDLLR------EHARSMAE---------------DDGTVPVLQLLTYYLHRSRAA------VDRL 591
Cdd:NF040586 315 RVDSGRRTLqvhrlvQAVLRdrlseeERARARHEvhrilaaaapgdepdDPRNWPRYAELWPHLEPSGALesddpeVRRL 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 592 FPDSLSHREgipqpttpipPIRDAEQAITWldAERGNIIATAVHGPE-----ICVGMLALALRpyldRQAHHDDALTL-- 664
Cdd:NF040586 395 LLDQVRYLY----------LRGDYESARDL--AERALERWRERLGPDdrqtlRLRFHLANALR----SLGRYEEARELde 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 665 QTLALQRARKLGHAHRDFEVQALSDLAWTCWRLGEYERAEEHAHLALEACEEPY--ERARALLTLGNVALRRR---QDKE 739
Cdd:NF040586 459 DTLERQRRVLGLGEDHPHTLMTAGGLGADLRALGRFREALELDEETLERHRRVFgeDHPRTLRAANNLAVSLRllgDYRE 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 740 AEQYLTQALDLTRigaDTWGEAHV-----LGILALVLDRAGRPRDARRHLDVALALHRKVGNPAGEAVILN---HLGVVL 811
Cdd:NF040586 539 ALELDREVLRRRR---RVLGPDHPrtllsANNLARDLRELGRYAEALDLLEEALERYREVLGGPDHPDTLRaakSLAVAL 615
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 1027875670 812 RHQGELAQARTRHEQAAALYREL--GNTADEAAALNGLA---EAAGDPARAVEE 860
Cdd:NF040586 616 RRAGRLEEALELAEDTYERYRRRfgPDHPDTLAAALSLAndlRALGDADEAREL 669
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
637-830 |
6.61e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 72.72 E-value: 6.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 637 PEICVGMLALALRPYLDRQAHHDDALTLQTLALQRARKLGHAHRdFEVQALSDLAWTCWRLGEYERAEEHAHLALEACEE 716
Cdd:COG3914 32 LEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALL-LLAALLELAALLLQALGRYEEALALYRRALALNPD 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 717 pyeRARALLTLGNVALRRRQDKEAEQYLTQALDLtrigADTWGEAHVLgiLALVLDRAGRPRDARRHLDVALALHrkvgn 796
Cdd:COG3914 111 ---NAEALFNLGNLLLALGRLEEALAALRRALAL----NPDFAEAYLN--LGEALRRLGRLEEAIAALRRALELD----- 176
|
170 180 190
....*....|....*....|....*....|....
gi 1027875670 797 pAGEAVILNHLGVVLRHQGELAQARTRHEQAAAL 830
Cdd:COG3914 177 -PDNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
|
|
| Trans_reg_C |
smart00862 |
Transcriptional regulatory protein, C terminal; This domain is almost always found associated ... |
16-91 |
2.62e-11 |
|
Transcriptional regulatory protein, C terminal; This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Pssm-ID: 214866 [Multi-domain] Cd Length: 76 Bit Score: 60.26 E-value: 2.62e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1027875670 16 GEPLTgLAPRHRAVLAYLLLNSGRVISIERLIDAMWGYDQPDTARSqIHASITALRKVLRGAGAVQLLQTRAG-GYV 91
Cdd:smart00862 1 GEPIK-LTPKEFRLLELLLRNPGRVVSREELLEAVWGDDEDVDDNT-LDVHISRLRKKLEDDGDPRLIETVRGvGYR 75
|
|
| trans_reg_C |
cd00383 |
DNA-binding effector domain of two-component system response regulators; Bacteria and some ... |
11-91 |
1.15e-10 |
|
DNA-binding effector domain of two-component system response regulators; Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.
Pssm-ID: 294013 [Multi-domain] Cd Length: 89 Bit Score: 58.64 E-value: 1.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 11 QLIVDGEPLTgLAPRHRAVLAYLLLNSGRVISIERLIDAMWGYDQPDTARSqIHASITALRKVLRGAGAVQLLQTRAG-G 89
Cdd:cd00383 9 EVTVDGEEVE-LTPKEFELLELLARNPGRVVSREELLEAVWGYDYEVDDRT-VDVHISRLRKKLEDDPEPRLIKTVRGvG 86
|
..
gi 1027875670 90 YV 91
Cdd:cd00383 87 YR 88
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
683-918 |
9.31e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.02 E-value: 9.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 683 EVQALSDLAWTCWRLGEYERAEEHAHLALEACEEPyerARALLTLGNVALRRRQDKEAEQYLTQALDLTRIGADTWGEah 762
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD---AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 763 vlgiLALVLDRAGRPRDARRHLDVALALHRKVgnpageAVILNHLGVVLRHQGELAQARTRHEQAAALyrelgnTADEAA 842
Cdd:COG0457 82 ----LGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALEL------DPDDAD 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1027875670 843 ALNGLAEA---AGDPARAVEEHADALALALatRNRPEQARAHDGLARAHLGLGHSEHAGEHGRLALGLYEELGVPEAEE 918
Cdd:COG0457 146 ALYNLGIAlekLGRYEEALELLEKLEAAAL--AALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAEL 222
|
|
| Trans_reg_C |
pfam00486 |
Transcriptional regulatory protein, C terminal; |
16-91 |
1.15e-09 |
|
Transcriptional regulatory protein, C terminal;
Pssm-ID: 425712 [Multi-domain] Cd Length: 77 Bit Score: 55.60 E-value: 1.15e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1027875670 16 GEPLTgLAPRHRAVLAYLLLNSGRVISIERLIDAMWGYDQPDTARSqIHASITALRKVLRGAG-AVQLLQTRAG-GYV 91
Cdd:pfam00486 1 GEEVE-LTPKEFKLLELLAENPGRVVSREQLLEEVWGEDYDVDDNT-VDVHISRLRKKLEDDPrDPRLIKTVRGvGYR 76
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
685-905 |
1.76e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 61.55 E-value: 1.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 685 QALSDLAWTCWRLGEYERAEEHAHLALEACEEPYERARALLTLGNVALRRRQDKEAEQYLTQALDLTRIGADTWGEAHVL 764
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 765 GILALVLDRAGRPRDARRHLDVALALhrkvgNPAgEAVILNHLGVVLRHQGELAQARTRHEQAAALYrelgntADEAAAL 844
Cdd:COG3914 82 ELAALLLQALGRYEEALALYRRALAL-----NPD-NAEALFNLGNLLLALGRLEEALAALRRALALN------PDFAEAY 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1027875670 845 NGLAEAA---GDPARAVEehadalALALATRNRPEQARAHDGLARAHLGLGHSEHAGEHGRLAL 905
Cdd:COG3914 150 LNLGEALrrlGRLEEAIA------ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRAL 207
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
719-911 |
5.53e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 55.01 E-value: 5.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 719 ERARALLTLGNVALRRRQDKEAEQYLTQALDLTRigadtwGEAHVLGILALVLDRAGRPRDARRHLDVALALHRKVgnpa 798
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 799 geAVILNHLGVVLRHQGELAQARTRHEQAAALyrelgnTADEAAALNGLAEA---AGDPARAVEEHADALalalatRNRP 875
Cdd:COG0457 76 --AEALNNLGLALQALGRYEEALEDYDKALEL------DPDDAEALYNLGLAlleLGRYDEAIEAYERAL------ELDP 141
|
170 180 190
....*....|....*....|....*....|....*.
gi 1027875670 876 EQARAHDGLARAHLGLGHSEHAGEHGRLALGLYEEL 911
Cdd:COG0457 142 DDADALYNLGIALEKLGRYEEALELLEKLEAAALAA 177
|
|
| CadC1 |
COG3710 |
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription]; |
11-90 |
9.71e-08 |
|
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];
Pssm-ID: 442924 [Multi-domain] Cd Length: 106 Bit Score: 51.06 E-value: 9.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 11 QLIVDGEPLTgLAPRHRAVLAYLLLNSGRVISIERLIDAMWGydQPDTARSQIHASITALRKVLRGAGAVQ-LLQTRAG- 88
Cdd:COG3710 16 ELLRDGEPVR-LSPRAFDLLLLLLEHPGRVVSRDELLAAVWP--GRVVSDNSLTQAISRLRKALGDDGLEPrLIRTVPRr 92
|
..
gi 1027875670 89 GY 90
Cdd:COG3710 93 GY 94
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
685-860 |
1.27e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.96 E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 685 QALSDLAWTCWRLGEYERAEEhahLALEACEEPYERARALLTLGNVALRRRQDKEAEQYLTQALDLTRigadtwGEAHVL 764
Cdd:COG2956 77 EALLELAQDYLKAGLLDRAEE---LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP------ENAHAY 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 765 GILALVLDRAGRPRDARRHLDVALALHRKvgnpAGEAVILnhlgvvlrhQGELAQARTRHEQAAALYRELGNTA-DEAAA 843
Cdd:COG2956 148 CELAELYLEQGDYDEAIEALEKALKLDPD----CARALLL---------LAELYLEQGDYEEAIAALERALEQDpDYLPA 214
|
170 180
....*....|....*....|
gi 1027875670 844 LNGLAEAA---GDPARAVEE 860
Cdd:COG2956 215 LPRLAELYeklGDPEEALEL 234
|
|
| NB-ARC |
pfam00931 |
NB-ARC domain; |
271-493 |
2.37e-07 |
|
NB-ARC domain;
Pssm-ID: 395745 [Multi-domain] Cd Length: 245 Bit Score: 52.77 E-value: 2.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 271 LERLVGERHGPVVTIDGMAGIGKTTLAVHVAHRLA---ARYpDGRLFIdlrahTAGREPVDAAAALEALLRQLGVPADRI 347
Cdd:pfam00931 9 IGKLSEKDEPGIVGIHGMGGVGKTTLAAQIFNDFDeveGHF-DSVAWV-----VVSKTFTISTLQQTILQNLGLSEDDWD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 348 PVTLGERSALWRAELADRRVLAVLDNALDA---DHVRPLLPGHSDTL-VLVTSRRRLVAlDGAQALS----VDVLGEQDA 419
Cdd:pfam00931 83 NKEEGELARKIRRALLTKRFLLVLDDVWDEedwDKIGIPLPDRENGCrVLLTTRSEEVA-GRVGGPSdpheVELLEPDEA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 420 AGLFERIVGERARDEPEAVGEVLR----LCGHLPLAIRISAARLQHR---PRWTVSY--LAGRLRDHRRLLDGVSAAFAL 490
Cdd:pfam00931 162 WELFENKVFPKTLGECELLEDVAKeiveKCRGLPLALKVLGGLLSCKktvEEWKHVYdvLQSELKSNSYSLNSVRSILQL 241
|
...
gi 1027875670 491 SYE 493
Cdd:pfam00931 242 SYE 244
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
761-833 |
5.17e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.07 E-value: 5.17e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1027875670 761 AHVLGILALVLDRAGRPRDARRHLDVALALHRKVGNP--AGEAVILNHLGVVLRHQGELAQARTRHEQAAALYRE 833
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPdhPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
684-831 |
7.29e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 46.72 E-value: 7.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 684 VQALSDLAWTCWRLGEYERAEEHAHLALEAceEPyERARALLTLGNVALRRRQDKEAEQYLTQALDLTRigadtwGEAHV 763
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALEL--DP-DNPEAFALLGEILLQLGDLDEAIVLLHEALELDP------DEPEA 74
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1027875670 764 LGILALVLDRAGRPRDARRHLDVALALHrkvgnpAGEAVILNHLGVVLRHQGELAQARTRHEQAAALY 831
Cdd:COG4783 75 RLNLGLALLKAGDYDEALALLEKALKLD------PEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| OmpR |
COG0745 |
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain ... |
11-75 |
1.96e-05 |
|
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain [Signal transduction mechanisms, Transcription];
Pssm-ID: 440508 [Multi-domain] Cd Length: 204 Bit Score: 46.49 E-value: 1.96e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1027875670 11 QLIVDGEPLTgLAPRHRAVLAYLLLNSGRVISIERLIDAMWGYDQPDTARSQIHasITALRKVLR 75
Cdd:COG0745 137 EVTRDGEPVE-LTPKEFRLLELLMRNPGRVVSREQLLEEVWGYDYGDDRTVDVH--ISRLRKKLE 198
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
719-793 |
7.08e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.99 E-value: 7.08e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1027875670 719 ERARALLTLGNVALRRRQDKEAEQYLTQALDLTRI--GADTWGEAHVLGILALVLDRAGRPRDARRHLDVALALHRK 793
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
698-911 |
2.52e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.95 E-value: 2.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 698 GEYERAEEhahLALEACEEPYERARALLTLGNVALRRRQDKEAEQYLTQALDLTRigadtwGEAHVLGILALVLDRAGRP 777
Cdd:COG2956 22 GQPDKAID---LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDP------DRAEALLELAQDYLKAGLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 778 RDARRHLDVALALHRKVGNpageavilnhlgvVLRHQGELAQARTRHEQAAALYRELGNTADEAA-ALNGLAEAA---GD 853
Cdd:COG2956 93 DRAEELLEKLLELDPDDAE-------------ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAhAYCELAELYleqGD 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1027875670 854 PARAVEEHadalalalatrnrpEQARAHD-GLARAHLGLGHSEHAGEHGRLALGLYEEL 911
Cdd:COG2956 160 YDEAIEAL--------------EKALKLDpDCARALLLLAELYLEQGDYEEAIAALERA 204
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
801-861 |
5.77e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 39.29 E-value: 5.77e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1027875670 801 AVILNHLGVVLRHQGELAQARTRHEQAAALYREL--GNTADEAAALNGLAEA---AGDPARAVEEH 861
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLyleLGRYEEALELL 68
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
658-716 |
7.23e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 39.29 E-value: 7.23e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1027875670 658 HDDALTLQTLALQRARKLGHAHRDFEVQALSDLAWTCWRLGEYERAEEHAHLALEACEE 716
Cdd:pfam13424 19 YDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
767-910 |
8.61e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.56 E-value: 8.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 767 LALVLDRAGRPRDARRHLDVALALHRKvgnpagEAVILNHLGVVLRHQGELAQARTRHEQAAALYrelgntADEAAALNG 846
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIVLLHEALELD------PDEPEARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1027875670 847 LAEA---AGDPARAVEEHADALalalatRNRPEQARAHDGLARAHLGLGHSEHAGEHGRLALGLYEE 910
Cdd:COG4783 78 LGLAllkAGDYDEALALLEKAL------KLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| PksD |
COG3321 |
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ... |
324-917 |
9.47e-04 |
|
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442550 [Multi-domain] Cd Length: 1386 Bit Score: 43.32 E-value: 9.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 324 REPVDAAAALEALLRQlgvpADRIPVTLGERSALWRAeladrrVLAVLDNALDADHVRPLLPGHSDTLVLVTS------- 396
Cdd:COG3321 774 RQPVRFADAVEALLAD----GVRVFLEVGPGPVLTGL------VRQCLAAAGDAVVLPSLRRGEDELAQLLTAlaqlwva 843
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 397 -------------RRRLVAL--------DGAQALSVDVLGEQDAAGLFERIVGERARDEPEAVGEVLRLCGHLPLAIRIS 455
Cdd:COG3321 844 gvpvdwsalypgrGRRRVPLptypfqreDAAAALLAAALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAA 923
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 456 AARLQHRPRWTVSYLAGRLRDHRRLLDGVSAAFALSYEQLDEAEQRMFRLFGLAPGRDIDPYGAAALAGIAEEEAEELLE 535
Cdd:COG3321 924 AALAALLALVALAAAAAALLALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALA 1003
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 536 GLLDAHMLLQLEPGRYTFHDLLREHARSMAEDDGTVPVLQLLTYYLHRSRAAVDRLFPDSLSHREGIPQPTTPIPPIRDA 615
Cdd:COG3321 1004 LLAAAALLLAAAAAAAALLALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAA 1083
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 616 EQAITWLDAERGNIIATAVHGPEICVGMLALALRPYLDRQAHHDDALTLQTLALQRARKLGHAHRDFEVQALSDLAWTCW 695
Cdd:COG3321 1084 LALAAALAAAALALALAALAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAAL 1163
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 696 RLGEYERAEEHAHLALEACEEPYERARALLTLGNVALRRRQDKEAEQYLTQALDLTRIGADTWGEAHVLGILALVLDRAG 775
Cdd:COG3321 1164 AAALLAAAALLLALALALAAALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAA 1243
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 776 RPRDARRHLDVALALHRKVGNPAGEAVILNHLGVVLRHQGELAQARTRHEQAAALYRELGNTADEAAALNGLAEAAGDPA 855
Cdd:COG3321 1244 AVAALAAAAAALLAALAALALLAAAAGLAALAAAAAAAAAALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALAA 1323
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1027875670 856 RAVEEHADALALALATRNRPEQARAHDGLARAHLGLGHSEHAGEHGRLALGLYEELGVPEAE 917
Cdd:COG3321 1324 ALLAAALAALAAAVAAALALAAAAAAAAAAAAAAAAAAALAAAAGAAAAAAALALAALAAAV 1385
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
719-861 |
1.06e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.18 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 719 ERARALLTLGNVALRRRQDKEAEQYLTQALDLTRigadtwGEAHVLGILALVLDRAGRPRDARRHLDVALALHRKvgnpa 798
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDP------DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD----- 70
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1027875670 799 gEAVILNHLGVVLRHQGELAQARTRHEQAAALYRELGNTADEAAAlngLAEAAGDPARAVEEH 861
Cdd:COG4783 71 -EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLAR---AYRALGRPDEAIAAL 129
|
|
| arsen_driv_ArsA |
TIGR04291 |
arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family ... |
233-307 |
1.09e-03 |
|
arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite).
Pssm-ID: 275109 [Multi-domain] Cd Length: 566 Bit Score: 42.77 E-value: 1.09e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1027875670 233 PALRLAGTAQPAEPPQPAVArrsFLPYDIPDFSGRAAELERlvgERHGPVVTIdGMAGIGKTTLAVHVAHRLAAR 307
Cdd:TIGR04291 281 EALRQLLNDDQPQLSLDITT---PQVPDLPSLSRLIDEIAK---SEKGLIMTM-GKGGVGKTTVAAAIAVRLANK 348
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
686-752 |
1.16e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.52 E-value: 1.16e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1027875670 686 ALSDLAWTCWRLGEYERAEEHAHLALEACEEPYE-----RARALLTLGNVALRRRQDKEAEQYLTQALDLTR 752
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGpdhplTATTLLNLGRLYLELGRYEEALELLERALALAE 76
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
642-923 |
1.99e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.99 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 642 GMLALALRPYLDRQAHHDDALTLQtlaLQRARkLGHAHRDF-EVQALSDLAWT-------CWRL-GEYERAEEHAHLALE 712
Cdd:TIGR02917 139 GQLELAQKSYEQALAIDPRSLYAK---LGLAQ-LALAENRFdEARALIDEVLTadpgnvdALLLkGDLLLSLGNIELALA 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 713 AceepYERARAL--------LTLGNVALRRRQDKEAEQYLTQALDLTRigadtwGEAHVLGILALVLDRAGRPRDARRHL 784
Cdd:TIGR02917 215 A----YRKAIALrpnniavlLALATILIEAGEFEEAEKHADALLKKAP------NSPLAHYLKALVDFQKKNYEDARETL 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 785 DVALalhrKVGNPAGEAVILnhLGVVLRHQGELAQARTRHEQ----------------------------AAALYRELGN 836
Cdd:TIGR02917 285 QDAL----KSAPEYLPALLL--AGASEYQLGNLEQAYQYLNQilkyapnshqarrllasiqlrlgrvdeaIATLSPALGL 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 837 TADEAAALNGLAEA---AGDPARAVEEhadalaLALATRNRPEQARAHDGLARAHLGLGHSEHAGEHGRLALGLYEELGV 913
Cdd:TIGR02917 359 DPDDPAALSLLGEAylaLGDFEKAAEY------LAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR 432
|
330
....*....|
gi 1027875670 914 PEAEEIRTFL 923
Cdd:TIGR02917 433 ADLLLILSYL 442
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
727-931 |
2.46e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.61 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 727 LGNVALRRRQDKEAEQYLTQALDLTrigadtwGEAHVLGILALVLDRAGRPRDARRHLDVALALHrkvgnpageaviLNH 806
Cdd:TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRA-------PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH------------PND 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 807 LgVVLRHQGELAQARTRHEQAAALYRELGNTA-DEAAALNGLA--EAAGDPARAVEehadalALALATRNRPEQARAHDG 883
Cdd:TIGR02917 770 A-VLRTALAELYLAQKDYDKAIKHYQTVVKKApDNAVVLNNLAwlYLELKDPRALE------YAERALKLAPNIPAILDT 842
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1027875670 884 LARAHLGLGHSEHAGEHGRLALGLyeelgVPEAEEIRTFLMSDCRAAG 931
Cdd:TIGR02917 843 LGWLLVEKGEADRALPLLRKAVNI-----APEAAAIRYHLALALLATG 885
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
644-791 |
5.84e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.40 E-value: 5.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 644 LALALRPYLDRQAHHDDALTLQTLALQRARKLGHAHRDFEVQALSDLAWTCWRLGEYERAEEHAHLALEACEEpyeRARA 723
Cdd:COG5010 14 LLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN---NPEL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1027875670 724 LLTLGNVALRRRQDKEAEQYLTQALDLTRigadtwGEAHVLGILALVLDRAGRPRDARRHLDVALALH 791
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKALALSP------DNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
721-830 |
6.18e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.06 E-value: 6.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 721 ARALLTLGNVALRRRQDKEAEQYLTQALDLTRigadtwGEAHVLGILALVLDRAGRPRDARRHLDVALALHrkvgnpAGE 800
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDP------DNADALLDLAEALLAAGDTEEAEELLERALALD------PDN 84
|
90 100 110
....*....|....*....|....*....|
gi 1027875670 801 AVILNHLGVVLRHQGELAQARTRHEQAAAL 830
Cdd:COG4235 85 PEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
668-830 |
6.36e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.40 E-value: 6.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 668 ALQRARKLGHAHRDFEVQALSDLAWTCWRLGEYERAEEHAHLALEACEEPYERARALLTLGNVALRRRQDKEAEQYLTQA 747
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 748 LDLTRigadtwGEAHVLGILALVLDRAGRPRDARRHLDVALALHRkvgnpaGEAVILNHLGVVLRHQGELAQARTRHEQA 827
Cdd:COG5010 81 LQLDP------NNPELYYNLALLYSRSGDKDEAKEYYEKALALSP------DNPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
...
gi 1027875670 828 AAL 830
Cdd:COG5010 149 LGT 151
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
668-834 |
7.13e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 39.33 E-value: 7.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 668 ALQRARKLGHAHRDfEVQALSDLAWTCWRLGEYERAEEHAHLALEACEEpyeRARALLTLGNVALRRRQDKEAEQYLTQA 747
Cdd:COG2956 129 AIEVLERLLKLGPE-NAHAYCELAELYLEQGDYDEAIEALEKALKLDPD---CARALLLLAELYLEQGDYEEAIAALERA 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 748 LDLTRigadtwGEAHVLGILALVLDRAGRPRDARRHLDVALALHRKVgnpageavilnhlgVVLRHQGELAQARTRHEQA 827
Cdd:COG2956 205 LEQDP------DYLPALPRLAELYEKLGDPEEALELLRKALELDPSD--------------DLLLALADLLERKEGLEAA 264
|
....*..
gi 1027875670 828 AALYREL 834
Cdd:COG2956 265 LALLERQ 271
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
684-791 |
7.92e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 37.68 E-value: 7.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1027875670 684 VQALSDLAWTCWRLGEYERAEEHAHLALEAceEPyERARALLTLGNVALRRRQDKEAEQYLTQALDLTRigadtwGEAHV 763
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRL--DP-DNADALLDLAEALLAAGDTEEAEELLERALALDP------DNPEA 87
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90 100
....*....|....*....|....*...
gi 1027875670 764 LGILALVLDRAGRPRDARRHLDVALALH 791
Cdd:COG4235 88 LYLLGLAAFQQGDYAEAIAAWQKLLALL 115
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