|
Name |
Accession |
Description |
Interval |
E-value |
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
12-278 |
4.85e-118 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 339.78 E-value: 4.85e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 12 WRLLLSNPVTAISAAVLLAVLIVAVAASWIAPYGINDIDVPSALQGPGTAHWFGTDELGRDVFSRVLVAIAASLRVAVVS 91
Cdd:COG1173 9 WRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARISLLVGLLA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 92 VMLAAVIGVLIGVLAGYRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLGPGITTTMLAIGIVYIPIFARVARASALGVR 171
Cdd:COG1173 89 VLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLVRAQVLSLR 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 172 VEPFVAVSRSMGTGDGYILIRHILPNIAGPLIVQLSLSLAFAILAEAALSFLGLGIQPPQPSLGRMIFDAQGFVTLAWWM 251
Cdd:COG1173 169 EREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEGRNYLLTAPWL 248
|
250 260
....*....|....*....|....*..
gi 1039669213 252 AVFPGAAIFVMVLAFNLFGDGLRDVLD 278
Cdd:COG1173 249 ALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| PRK09881 |
PRK09881 |
D,D-dipeptide ABC transporter permease; |
12-282 |
8.06e-80 |
|
D,D-dipeptide ABC transporter permease;
Pssm-ID: 182131 [Multi-domain] Cd Length: 296 Bit Score: 243.57 E-value: 8.06e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 12 WRLLLSnPVTAISAAVLLAVLIVAVAASWIAPYGINDIDVPSALQGPGTAHWFGTDELGRDVFSRVLVAIAASLRVAVVS 91
Cdd:PRK09881 25 WMLKGS-PLTVTGAVIIVLMLLMMIFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 92 VMLAAVIGVLIGVLAGYRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLGPGITTTMLAIGIVYIPIFARVARASALGVR 171
Cdd:PRK09881 104 VAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVR 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 172 VEPFVAVSRSMGTGDGYILIRHILPNIAGPLIVQLSLSLAFAILAEAALSFLGLGIQPPQPSLGRMIFDAQGFVTLAWWM 251
Cdd:PRK09881 184 QYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWY 263
|
250 260 270
....*....|....*....|....*....|.
gi 1039669213 252 AVFPGAAIFVMVLAFNLFGDGLRDVLDPKQR 282
Cdd:PRK09881 264 CAFPGAAILLTAVGFNLFGDGIRDLLDPKAG 294
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
22-278 |
8.89e-73 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 224.19 E-value: 8.89e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 22 AISAAVLLAVL-IVAVAASWIAPYGINDIDVPSALQGPGTAHWFGTDELGRDVFSRVLVAIAASLRVAVVSVMLAAVIGV 100
Cdd:TIGR02790 1 VVSALLIIAVLfLLAIFAPWIAPHDPLAQNLPMRLLGPSMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTIGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 101 LIGVLAGYRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLGPGITTTMLAIGIVYIPIFARVARASALGVRVEPFVAVSR 180
Cdd:TIGR02790 81 LIGGLAGYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQREFVLAAR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 181 SMGTGDGYILIRHILPNIAGPLIVQLSLSLAFAILAEAALSFLGLGIQPPQPSLGRMIFDAQGFVTLAWWMAVFPGAAIF 260
Cdd:TIGR02790 161 TSGASHWQIIRRHILPNILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIYPGLAIL 240
|
250
....*....|....*...
gi 1039669213 261 VMVLAFNLFGDGLRDVLD 278
Cdd:TIGR02790 241 ISVMAFNLLGDALRDHLG 258
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
99-282 |
1.79e-15 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 72.72 E-value: 1.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 99 GVLIGVLAG-YRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLGPGIT----TTMLAIGIVYIPIFARVARASALGVRVE 173
Cdd:pfam00528 1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILghgiLPAIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 174 PFVAVSRSMGTGDGYILIRHILPNIAGPLIVQLSLSLAFAILAEAALSFLGLGiqppqPSLGRMIFDAQGFVTLAWWMAV 253
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW-----PGLGLLLIEAILGYDYPEIQGP 155
|
170 180
....*....|....*....|....*....
gi 1039669213 254 FpgAAIFVMVLAFNLFGDGLRDVLDPKQR 282
Cdd:pfam00528 156 V--LAAALILLLLNLLVDILQRLLDPRVR 182
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
81-261 |
5.26e-15 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 71.54 E-value: 5.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 81 IAASLRVAVVSVMLAAVIGVLIGVLAGYRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLG--------PGITTTMLAIG 152
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGvllgwgilPGLGLPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 153 IVYIPIFARVARASALGVRVEPFVAVSRSMGTGDGYILIRHILPNIAGPLIVQLSLSLAFAILAEAALSFLGLGIQPPQP 232
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160
|
170 180
....*....|....*....|....*....
gi 1039669213 233 SLGRMIFDAQGFVTLAWWMAVFPGAAIFV 261
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
12-278 |
4.85e-118 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 339.78 E-value: 4.85e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 12 WRLLLSNPVTAISAAVLLAVLIVAVAASWIAPYGINDIDVPSALQGPGTAHWFGTDELGRDVFSRVLVAIAASLRVAVVS 91
Cdd:COG1173 9 WRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARISLLVGLLA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 92 VMLAAVIGVLIGVLAGYRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLGPGITTTMLAIGIVYIPIFARVARASALGVR 171
Cdd:COG1173 89 VLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLVRAQVLSLR 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 172 VEPFVAVSRSMGTGDGYILIRHILPNIAGPLIVQLSLSLAFAILAEAALSFLGLGIQPPQPSLGRMIFDAQGFVTLAWWM 251
Cdd:COG1173 169 EREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEGRNYLLTAPWL 248
|
250 260
....*....|....*....|....*..
gi 1039669213 252 AVFPGAAIFVMVLAFNLFGDGLRDVLD 278
Cdd:COG1173 249 ALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| PRK09881 |
PRK09881 |
D,D-dipeptide ABC transporter permease; |
12-282 |
8.06e-80 |
|
D,D-dipeptide ABC transporter permease;
Pssm-ID: 182131 [Multi-domain] Cd Length: 296 Bit Score: 243.57 E-value: 8.06e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 12 WRLLLSnPVTAISAAVLLAVLIVAVAASWIAPYGINDIDVPSALQGPGTAHWFGTDELGRDVFSRVLVAIAASLRVAVVS 91
Cdd:PRK09881 25 WMLKGS-PLTVTGAVIIVLMLLMMIFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 92 VMLAAVIGVLIGVLAGYRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLGPGITTTMLAIGIVYIPIFARVARASALGVR 171
Cdd:PRK09881 104 VAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVR 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 172 VEPFVAVSRSMGTGDGYILIRHILPNIAGPLIVQLSLSLAFAILAEAALSFLGLGIQPPQPSLGRMIFDAQGFVTLAWWM 251
Cdd:PRK09881 184 QYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWY 263
|
250 260 270
....*....|....*....|....*....|.
gi 1039669213 252 AVFPGAAIFVMVLAFNLFGDGLRDVLDPKQR 282
Cdd:PRK09881 264 CAFPGAAILLTAVGFNLFGDGIRDLLDPKAG 294
|
|
| PRK15082 |
PRK15082 |
glutathione ABC transporter permease GsiD; Provisional |
12-280 |
3.20e-78 |
|
glutathione ABC transporter permease GsiD; Provisional
Pssm-ID: 185040 [Multi-domain] Cd Length: 301 Bit Score: 239.63 E-value: 3.20e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 12 WRLLLSNPVTAISAAVLLAVLIVAVAASWIAPYGI-NDIDVPSALQGPGTAHWFGTDELGRDVFSRVLVAIAASLRVAVV 90
Cdd:PRK15082 29 WRRFRRQHVALVAGLFVLLLIVVAIFAPWIAPYDAeNYFDYDALNAGPSLQHWFGVDSLGRDIFSRILVGARISLAAGFF 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 91 SVMLAAVIGVLIGVLAGYRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLGPGITTTMLAIGIVYIPIFARVARASALGV 170
Cdd:PRK15082 109 SVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILGSGMANVIIAVAIFSIPAFARLVRGNTLVL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 171 RVEPFVAVSRSMGTGDGYILIRHILPNIAGPLIVQLSLSLAFAILAEAALSFLGLGIQPPQPSLGRMIFDAQGFVTLAWW 250
Cdd:PRK15082 189 KQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPH 268
|
250 260 270
....*....|....*....|....*....|
gi 1039669213 251 MAVFPGAAIFVMVLAFNLFGDGLRDVLDPK 280
Cdd:PRK15082 269 VALFPSLAIFLTVLAFNLLGDGLRDALDPK 298
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
22-278 |
8.89e-73 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 224.19 E-value: 8.89e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 22 AISAAVLLAVL-IVAVAASWIAPYGINDIDVPSALQGPGTAHWFGTDELGRDVFSRVLVAIAASLRVAVVSVMLAAVIGV 100
Cdd:TIGR02790 1 VVSALLIIAVLfLLAIFAPWIAPHDPLAQNLPMRLLGPSMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTIGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 101 LIGVLAGYRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLGPGITTTMLAIGIVYIPIFARVARASALGVRVEPFVAVSR 180
Cdd:TIGR02790 81 LIGGLAGYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQREFVLAAR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 181 SMGTGDGYILIRHILPNIAGPLIVQLSLSLAFAILAEAALSFLGLGIQPPQPSLGRMIFDAQGFVTLAWWMAVFPGAAIF 260
Cdd:TIGR02790 161 TSGASHWQIIRRHILPNILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIYPGLAIL 240
|
250
....*....|....*...
gi 1039669213 261 VMVLAFNLFGDGLRDVLD 278
Cdd:TIGR02790 241 ISVMAFNLLGDALRDHLG 258
|
|
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
12-280 |
4.41e-67 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 211.18 E-value: 4.41e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 12 WRLLLSNPVTAISAAVLLAVLIVAVAASWIAPYGIND------IDVPSALQGPGTAHWFGTDELGRDVFSRVLVAIAASL 85
Cdd:PRK10913 23 WHYFKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEqfrdalLAPPVWQEGGSWAHILGTDDVGRDVLSRLMYGARLSL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 86 RVAVVSVMLAAVIGVLIGVLAGYRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLGPGITTTMLAIGIVYIPIFARVARA 165
Cdd:PRK10913 103 LVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIVNAALALTFVALPHYVRLTRA 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 166 SALGVRVEPFVAVSRSMGTGDGYILIRHILPNIAGPLIVQLSLSLAFAILAEAALSFLGLGIQPPQPSLGRMIFDAQGFV 245
Cdd:PRK10913 183 AVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFA 262
|
250 260 270
....*....|....*....|....*....|....*
gi 1039669213 246 TLAWWMAVFPGAAIFVMVLAFNLFGDGLRDVLDPK 280
Cdd:PRK10913 263 QSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPK 297
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
17-283 |
1.59e-66 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 208.75 E-value: 1.59e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 17 SNPVTAISAAVLLAVLIVAVAASWIAPYGINDIDVPSALQGPGTAHWFGTDELGRDVFSRVLVAIAASLRVAVVSVMLAA 96
Cdd:PRK10417 2 SRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAGTRVSLGSVMACLLLVL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 97 VIGVLIGVLAGYRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLGPGITTTMLAIGIVYIPIFARVARASALGVRVEPFV 176
Cdd:PRK10417 82 ALGLVIGGSAGLLGGRVDQATMRVADMFMTFPTSILAFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 177 AVSRSMGTGDGYILIRHILPNIAGPLIVQLSLSLAFAILAEAALSFLGLGIQPPQPSLGRMIFDAQGFVTLAWWMAVFPG 256
Cdd:PRK10417 162 LAARLSGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIWTQPLLMFWPG 241
|
250 260
....*....|....*....|....*..
gi 1039669213 257 AAIFVMVLAFNLFGDGLRDVLDPKQRT 283
Cdd:PRK10417 242 LALFISVMAFNLLGDALRDHLDPHLVT 268
|
|
| SapC |
COG4171 |
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms]; |
12-278 |
9.48e-61 |
|
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
Pssm-ID: 443331 [Multi-domain] Cd Length: 296 Bit Score: 194.65 E-value: 9.48e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 12 WRLLLSNPVTAISAAVLLAVLIVAVAASWIAPYGINDIDV------PSALQGPGTAHWFGTDELGRDVFSRVLVAIAASL 85
Cdd:COG4171 20 WQSFRKNPLAMIGLYGFLFLILLALFGPLLAPYSPDQQFIgalllpPSWDDNGDVSFFLGTDDLGRDILSRLLYGARYTF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 86 RVAVVSVMLAAVIGVLIGVLAGYRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLGPGITTTMLAIGIVYIPIFARVARA 165
Cdd:COG4171 100 GSALLVVLAAAIIGGIIGILAGMSRGLKSSILNHLLDTLLSIPSLLLAIIIVALLGPGLENAMLAITLALLPQFIHAIYQ 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 166 SalgVRVE---PFVAVSRSMGTGDGYILIRHILPNIAGPLIVQLSLSLAFAILAEAALSFLGLGIQPPQPSLGRMIFDAQ 242
Cdd:COG4171 180 A---VHQElkkEYVLAARLDGASNWQLLRYSILPNILEVLVTELTRALSIAILDISALGFLGLGAQLPSPEWGAMLGDSL 256
|
250 260 270
....*....|....*....|....*....|....*.
gi 1039669213 243 GFVTLAWWMAVFPGAAIFVMVLAFNLFGDGLRDVLD 278
Cdd:COG4171 257 ELIYLAPWTVILPGLAIMFSVLIVNLVGDGLRRALN 292
|
|
| PRK15406 |
PRK15406 |
oligopeptide ABC transporter permease OppC; Provisional |
5-282 |
7.24e-48 |
|
oligopeptide ABC transporter permease OppC; Provisional
Pssm-ID: 185304 [Multi-domain] Cd Length: 302 Bit Score: 161.93 E-value: 7.24e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 5 QDSRvaswRLLLSNPVTAISAAVLLAVLIVAVAASWIAPYGINDID--VPSALQGPGTAHWFGTDELGRDVFSRVLVAIA 82
Cdd:PRK15406 27 QDAR----RRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDwgMMSSAPDMESGHYFGTDSSGRDLLVRVAIGGR 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 83 ASLRVAVVSVMLAAVIGVLIGVLAGYRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLGPGITTTMLAIGIVYIPIFARV 162
Cdd:PRK15406 103 ISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARI 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 163 ARASALGVRVEPFVAVSRSMGTGDGYILIRHILPNIAGPLIVQLSLSLAFAILAEAALSFLGLGIQPPQPSLGRMIFDAQ 242
Cdd:PRK15406 183 VRGQTLSLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGA 262
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1039669213 243 GFVTLAWWMAVFPGAAIFVMVLAFNLFGDGLRDVLDPKQR 282
Cdd:PRK15406 263 NSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKDR 302
|
|
| PRK15111 |
PRK15111 |
peptide ABC transporter permease SapC; |
11-274 |
1.17e-41 |
|
peptide ABC transporter permease SapC;
Pssm-ID: 185066 [Multi-domain] Cd Length: 296 Bit Score: 145.61 E-value: 1.17e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 11 SWRLLLSNPVTAISAAVLLAVLIVAVAASWIAPYGINDIDVPSALQGPGTAHW------FGTDELGRDVFSRVLVAIAAS 84
Cdd:PRK15111 19 AWRKFYSDALAMVGLYGCAGLALLCLFGGWLAPYGIDQQFLGYQLLPPSWSRYgevsffLGTDDLGRDVLSRLLSGAAPT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 85 LRVAVVSVMLAAVIGVLIGVLAGYRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLGPGITTTMLAIGIVYIPIFARVAR 164
Cdd:PRK15111 99 VGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLSHAMFAVWLALLPRMVRSIY 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 165 ASALGVRVEPFVAVSRSMGTGDGYILIRHILPNIAGPLIVQLSLSLAFAILAEAALSFLGLGIQPPQPSLGRMIFDAQGF 244
Cdd:PRK15111 179 SAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDSLEL 258
|
250 260 270
....*....|....*....|....*....|
gi 1039669213 245 VTLAWWMAVFPGAAIFVMVLAFNLFGDGLR 274
Cdd:PRK15111 259 IYVAPWTVMLPGAAIMLSVLLVNLLGDGIR 288
|
|
| YejE |
COG4239 |
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ... |
43-284 |
1.25e-39 |
|
ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443381 [Multi-domain] Cd Length: 342 Bit Score: 141.44 E-value: 1.25e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 43 PYGINDID------VPSAlqgPGTAHWFGTDELGRDVFSRVLVAIAASLRVAVVSVMLAAVIGVLIGVLAGYRGGWIDTV 116
Cdd:COG4239 99 PYSYDTINydlpspAPSP---PSAENWLGTDDQGRDVLARLIYGFRISVLFGLALTVISSVIGVAAGAVQGYFGGRVDLL 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 117 FMRVVDVMFAFPVLLLALAIVAVLGPGITT---TMLA---IGIVYipifarVARASALGVRVEPFVAVSRSMGTGDGYIL 190
Cdd:COG4239 176 FQRFIEIWSSMPELYLLIILSSIFQPSFWLllgILLLfgwMGLVG------VVRAEFLRARNLEYVRAARALGVSDRRIM 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 191 IRHILPNIAGPLIVQLSLSLAFAILAEAALSFLGLGIQPPQPSLGRMIfdAQGFVTL-AWWMAVFPGAAIFVMVLAFNLF 269
Cdd:COG4239 250 FRHILPNAMVATLTFLPFILSGAITTLTSLDFLGFGLPPGSPSLGELL--AQGKNNLqAPWLGLSAFVVLALMLSLLVFI 327
|
250
....*....|....*
gi 1039669213 270 GDGLRDVLDPKQRTS 284
Cdd:COG4239 328 GEAVRDAFDPRKTFR 342
|
|
| PRK15021 |
PRK15021 |
microcin C ABC transporter permease; Provisional |
58-281 |
1.73e-26 |
|
microcin C ABC transporter permease; Provisional
Pssm-ID: 184982 [Multi-domain] Cd Length: 341 Bit Score: 106.22 E-value: 1.73e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 58 PGTAHWFGTDELGRDVFSRVLVAIAASLRVAVVSVMLAAVIGVLIGVLAGYRGGWIDTVFMRVVDVMFAFPVLLLALAIV 137
Cdd:PRK15021 117 PSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILLS 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 138 AVLGPGItTTMLAIGIVYIPI-FARVARASALGVRVEPFVAVSRSMGTGDGYILIRHILPNIAGPLIVQLSLSLAFAILA 216
Cdd:PRK15021 197 SVVQPNF-WWLLAITVLFGWMsLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITT 275
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039669213 217 EAALSFLGLGIQPPQPSLGRMIFDAQGFVTLAWW-MAVFPGAAIFVMVLAFnlFGDGLRDVLDPKQ 281
Cdd:PRK15021 276 LTSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLgITAFLSVAILLSLLIF--IGEAVRDAFDPNK 339
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
70-284 |
2.60e-19 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 85.89 E-value: 2.60e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 70 GRDVFSRVLVAIAASLRVAVVSVMLAAVIGVLIGVLAG-YRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLG------- 141
Cdd:COG0601 84 GRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAAlRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAvklgwlp 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 142 -PGITTTM--------------LAIGIVYIPIFARVARASALGVRVEPFVAVSRSMGTGDGYILIRHILPNIAGPLIVQL 206
Cdd:COG0601 164 vSGRVSPWedfldalrhlilpaLTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVL 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 207 SLSLAF----AILAEAALSFlglgiqppqPSLGRMIFDA---------QGFVTLawwmavfpgaaIFVMVLAFNLFGDGL 273
Cdd:COG0601 244 GLQLGGllggAVVVETVFSW---------PGLGRLLVDAilnrdypvvQGIVLL-----------IAVLVVLVNLLVDLL 303
|
250
....*....|.
gi 1039669213 274 RDVLDPKQRTS 284
Cdd:COG0601 304 YALLDPRIRLG 314
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
99-282 |
1.79e-15 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 72.72 E-value: 1.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 99 GVLIGVLAG-YRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLGPGIT----TTMLAIGIVYIPIFARVARASALGVRVE 173
Cdd:pfam00528 1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILghgiLPAIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 174 PFVAVSRSMGTGDGYILIRHILPNIAGPLIVQLSLSLAFAILAEAALSFLGLGiqppqPSLGRMIFDAQGFVTLAWWMAV 253
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW-----PGLGLLLIEAILGYDYPEIQGP 155
|
170 180
....*....|....*....|....*....
gi 1039669213 254 FpgAAIFVMVLAFNLFGDGLRDVLDPKQR 282
Cdd:pfam00528 156 V--LAAALILLLLNLLVDILQRLLDPRVR 182
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
81-261 |
5.26e-15 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 71.54 E-value: 5.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 81 IAASLRVAVVSVMLAAVIGVLIGVLAGYRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLG--------PGITTTMLAIG 152
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGvllgwgilPGLGLPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 153 IVYIPIFARVARASALGVRVEPFVAVSRSMGTGDGYILIRHILPNIAGPLIVQLSLSLAFAILAEAALSFLGLGIQPPQP 232
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160
|
170 180
....*....|....*....|....*....
gi 1039669213 233 SLGRMIFDAQGFVTLAWWMAVFPGAAIFV 261
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
|
|
| PhnE |
TIGR01097 |
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ... |
19-161 |
1.69e-06 |
|
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]
Pssm-ID: 273441 [Multi-domain] Cd Length: 250 Bit Score: 48.31 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 19 PVTAISAAVLLAVLIVAVAASWIapyginDIDVPSALQGPGTAHWFGTDELGRD--VFSRVLVAIAASLRVAVVSVMLAA 96
Cdd:TIGR01097 2 RRLIRIWLLALLVALYVWAFALL------GFDLARLLAGPGQMADLLGRMFPPDwsYLPRILKALLETLAMAILGTVLAA 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039669213 97 VIGVLIGVLAG---YRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLGPGITTTMLAIGIVYIPIFAR 161
Cdd:TIGR01097 76 VLAVPLALLAArniTPSPWLYGLARLLLNFLRAIPELVWALIFVAAVGLGPFAGVLALAFHTVGFLGK 143
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
78-226 |
3.56e-06 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 47.06 E-value: 3.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 78 LVAIAASLRVAVVSVMLAAVIGVLIGVLAGyRGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLGPGITTTMLAIGIVYIP 157
Cdd:COG0600 60 WEHLLASLLRVLLGFALAALLGVPLGLLLG-LSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFF 138
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039669213 158 IFARVARASALGVRVEpFVAVSRSMGTGDG----YILIRHILPNIAGPLIVQLSLSLAFAILAEAALSFLGLG 226
Cdd:COG0600 139 PILLNTAAGVRSVDPE-LLELARSLGASRWqilrKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSGLG 210
|
|
| PhnE |
COG3639 |
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ... |
26-162 |
1.61e-05 |
|
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 442856 [Multi-domain] Cd Length: 244 Bit Score: 45.07 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 26 AVLLAVLIVAVAASWIApyginDIDVPSALQGPGTAHWFGTDELGRD--VFSRVLVAIAASLRVAVVSVMLAAVIGVLIG 103
Cdd:COG3639 1 LLLLALLALLVWSLWGL-----EFDLGRLIDGLPNLADFLSRFFPPDwsYLPDLLSALLETLAIALLGTLLGAVLALPLA 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039669213 104 VLAGY---RGGWIDTVFMRVVDVMFAFPVLLLALAIVAVLGPGITTTMLAIGIVYIPIFARV 162
Cdd:COG3639 76 FLAARnlaPNPWVRLLARRLLNVLRAIPELVWALIFVAAVGLGPFAGVLALAIHTIGFLGKL 137
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
25-214 |
2.76e-05 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 45.15 E-value: 2.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 25 AAVLLAVLIVAVAASWIAPYGINdidVPSALQGPGTAHWFGTDELGRDVFSRVLVAIAASLRVAVVSVMLAAVIGVLIGV 104
Cdd:COG1178 287 RWLALALCLLLVLLGLLLPLLAL---LLWSLTKALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAY 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 105 LAGYRGGWIDTVFMRVVDVMFAFPVLLLALAIV----AVLGPGITTTMLAIGIVYI----PIFARVARASALGVRVEpFV 176
Cdd:COG1178 364 LVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLllfnRPLPLLLYGTLAILVLAYVvrflPFALRSLEAALAQIDPS-LE 442
|
170 180 190
....*....|....*....|....*....|....*...
gi 1039669213 177 AVSRSMGTGDGYILIRHILPNIAGPLIVQLSLSLAFAI 214
Cdd:COG1178 443 EAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSM 480
|
|
| oppB |
PRK09471 |
oligopeptide ABC transporter permease OppB; |
77-195 |
4.69e-05 |
|
oligopeptide ABC transporter permease OppB;
Pssm-ID: 181886 [Multi-domain] Cd Length: 306 Bit Score: 44.29 E-value: 4.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039669213 77 VLVAIAASLRVAVVSVMLAAVIGVLIGVLAGYR-GGWIDTVFMR-----VVDVMFAF-PVLLLALAIVAVLGPG------ 143
Cdd:PRK09471 90 VASSFPVSAKLGAAAFFLAVILGVSAGVIAALKqNTKWDYTVMGfamtgVVIPSFVVaPLLVLIFAITLHWLPGggwngg 169
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039669213 144 ----ITTTMLAIGIVYIPIFARVARASALGVRVEPFVAVSRSMGTGDGYILIRHIL 195
Cdd:PRK09471 170 alkfMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHAL 225
|
|
| OppC_N |
pfam12911 |
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ... |
12-58 |
1.16e-04 |
|
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.
Pssm-ID: 463747 [Multi-domain] Cd Length: 53 Bit Score: 38.93 E-value: 1.16e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1039669213 12 WRLLLSNPVTAISAAVLLAVLIVAVAASWIAPYGINDIDVPSALQGP 58
Cdd:pfam12911 7 WRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYDPDQQDLSADLLPP 53
|
|
| |
