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Conserved domains on  [gi|1040951134|ref|WP_065168388|]
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MULTISPECIES: YggT family protein [Photobacterium]

Protein Classification

YggT family protein( domain architecture ID 10492032)

YggT family protein similar to Escherichia coli membrane protein YggT

PubMed:  19966467

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 104-179 3.72e-18

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440525  Cd Length: 84  Bit Score: 74.77  E-value: 3.72e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1040951134 104 VKAAGGLLFWVLLIRAILSWVSQ-GRNPIEYVMHQLTEPLMAPIRRVLPAMGGLDLSILVIFLGLQFANYLMGDLIG 179
Cdd:COG0762     8 LSLLLNIYFWLIIIRAILSWVPPfGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLLGLLA 84
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 9-78 4.83e-12

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


:

Pssm-ID: 460533  Cd Length: 71  Bit Score: 58.65  E-value: 4.83e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1040951134   9 STVFDLYIMIVLLRVWLQW-SRADFYNPFSQFIVKATQPVVAPLRRVIPSIGSFDMATILFGYVLCVAKFI 78
Cdd:pfam02325   1 YTLLSLYILLLIIRALLSWvPPNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLRIL 71
 
Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 104-179 3.72e-18

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 74.77  E-value: 3.72e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1040951134 104 VKAAGGLLFWVLLIRAILSWVSQ-GRNPIEYVMHQLTEPLMAPIRRVLPAMGGLDLSILVIFLGLQFANYLMGDLIG 179
Cdd:COG0762     8 LSLLLNIYFWLIIIRAILSWVPPfGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLLGLLA 84
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 109-173 4.63e-12

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 58.65  E-value: 4.63e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1040951134 109 GLLFWVLLIRAILSWVSQG--RNPIEYVMHQLTEPLMAPIRRVLPAMGGLDLSILVIFLGLQFANYL 173
Cdd:pfam02325   5 SLYILLLIIRALLSWVPPNpfVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLRIL 71
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 9-78 4.83e-12

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 58.65  E-value: 4.83e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1040951134   9 STVFDLYIMIVLLRVWLQW-SRADFYNPFSQFIVKATQPVVAPLRRVIPSIGSFDMATILFGYVLCVAKFI 78
Cdd:pfam02325   1 YTLLSLYILLLIIRALLSWvPPNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLRIL 71
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 1-84 9.33e-11

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 55.51  E-value: 9.33e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1040951134   1 MNSMAFLISTVFDLYIMIVLLRVWLQWSRADFYNPFSQFIVKATQPVVAPLRRVIPSIGSFDMATILFGYVLCVAKFILL 80
Cdd:COG0762     1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPFGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLL 80


                  ....
gi 1040951134  81 QLAL 84
Cdd:COG0762    81 GLLA 84
 
Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 104-179 3.72e-18

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 74.77  E-value: 3.72e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1040951134 104 VKAAGGLLFWVLLIRAILSWVSQ-GRNPIEYVMHQLTEPLMAPIRRVLPAMGGLDLSILVIFLGLQFANYLMGDLIG 179
Cdd:COG0762     8 LSLLLNIYFWLIIIRAILSWVPPfGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLLGLLA 84
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 109-173 4.63e-12

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 58.65  E-value: 4.63e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1040951134 109 GLLFWVLLIRAILSWVSQG--RNPIEYVMHQLTEPLMAPIRRVLPAMGGLDLSILVIFLGLQFANYL 173
Cdd:pfam02325   5 SLYILLLIIRALLSWVPPNpfVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLRIL 71
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 9-78 4.83e-12

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 58.65  E-value: 4.83e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1040951134   9 STVFDLYIMIVLLRVWLQW-SRADFYNPFSQFIVKATQPVVAPLRRVIPSIGSFDMATILFGYVLCVAKFI 78
Cdd:pfam02325   1 YTLLSLYILLLIIRALLSWvPPNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLRIL 71
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 1-84 9.33e-11

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 55.51  E-value: 9.33e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1040951134   1 MNSMAFLISTVFDLYIMIVLLRVWLQWSRADFYNPFSQFIVKATQPVVAPLRRVIPSIGSFDMATILFGYVLCVAKFILL 80
Cdd:COG0762     1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPFGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLL 80


                  ....
gi 1040951134  81 QLAL 84
Cdd:COG0762    81 GLLA 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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