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Conserved domains on  [gi|1046215745|ref|WP_065608134|]
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DNA recombination protein RmuC [Vibrio splendidus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK10361 super family cl42919
DNA recombination protein RmuC; Provisional
58-493 1.35e-177

DNA recombination protein RmuC; Provisional


The actual alignment was detected with superfamily member PRK10361:

Pssm-ID: 182409 [Multi-domain]  Cd Length: 475  Bit Score: 507.60  E-value: 1.35e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  58 LKSSLAEAQQELNELDDDRDkaafelkqAHGKVMAAMEKLRYFEAVKQERQQYADDINVLKEHKSELEAELREQEARHDQ 137
Cdd:PRK10361   21 LFASYQHAQQKAEQLAEREE--------MVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEA 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 138 ENLANSEKLQLLEQAESRLKQQFELLANQLFESKTAKVDQQNKQSLEGLLSPLKEQLEGFKKQVNDSFSQEAKERHTLVH 217
Cdd:PRK10361   93 AQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAH 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 218 ELKNLQRLNESMTREAVNLTQALKGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVNLQNDAGKRYQPDVIVHLPQDKQ 297
Cdd:PRK10361  173 EIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLREGYEYETQVSIENDARSRMQPDVIVRLPQGKD 252
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 298 VVVDSKMALVAFERYFNAETDQQRDAALRDHLASLRAHIKGLSQKDYHQLKGIQSLDYVLMFIPVEPAFQVAIQADPSLV 377
Cdd:PRK10361  253 VVIDAKMTLVAYERYFNAEDDYTRESALQEHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELI 332
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 378 KDAMEQNIILVSPTTLLVALRTIDNLWRNDRQNQNAQVIAERASKLYDKLRLFVDDMEGLGSSLDRANQSYQGAMNKLVT 457
Cdd:PRK10361  333 TEALKNNIMLVSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKLSS 412
                         410       420       430
                  ....*....|....*....|....*....|....*...
gi 1046215745 458 GRGNVIRQAESFKQLGVEVKKPISVGLAEMA--QNEAF 493
Cdd:PRK10361  413 GRGNVLAQAEAFRGLGVEIKREINPDLAEQAvsQDEEY 450
 
Name Accession Description Interval E-value
PRK10361 PRK10361
DNA recombination protein RmuC; Provisional
58-493 1.35e-177

DNA recombination protein RmuC; Provisional


Pssm-ID: 182409 [Multi-domain]  Cd Length: 475  Bit Score: 507.60  E-value: 1.35e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  58 LKSSLAEAQQELNELDDDRDkaafelkqAHGKVMAAMEKLRYFEAVKQERQQYADDINVLKEHKSELEAELREQEARHDQ 137
Cdd:PRK10361   21 LFASYQHAQQKAEQLAEREE--------MVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEA 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 138 ENLANSEKLQLLEQAESRLKQQFELLANQLFESKTAKVDQQNKQSLEGLLSPLKEQLEGFKKQVNDSFSQEAKERHTLVH 217
Cdd:PRK10361   93 AQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAH 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 218 ELKNLQRLNESMTREAVNLTQALKGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVNLQNDAGKRYQPDVIVHLPQDKQ 297
Cdd:PRK10361  173 EIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLREGYEYETQVSIENDARSRMQPDVIVRLPQGKD 252
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 298 VVVDSKMALVAFERYFNAETDQQRDAALRDHLASLRAHIKGLSQKDYHQLKGIQSLDYVLMFIPVEPAFQVAIQADPSLV 377
Cdd:PRK10361  253 VVIDAKMTLVAYERYFNAEDDYTRESALQEHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELI 332
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 378 KDAMEQNIILVSPTTLLVALRTIDNLWRNDRQNQNAQVIAERASKLYDKLRLFVDDMEGLGSSLDRANQSYQGAMNKLVT 457
Cdd:PRK10361  333 TEALKNNIMLVSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKLSS 412
                         410       420       430
                  ....*....|....*....|....*....|....*...
gi 1046215745 458 GRGNVIRQAESFKQLGVEVKKPISVGLAEMA--QNEAF 493
Cdd:PRK10361  413 GRGNVLAQAEAFRGLGVEIKREINPDLAEQAvsQDEEY 450
RmuC COG1322
DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and ...
152-486 2.17e-147

DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and repair];


Pssm-ID: 440933  Cd Length: 342  Bit Score: 425.74  E-value: 2.17e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 152 AESRLKQQFELLANQLFESKTAKVDQQNKQSLEGLLSPLKEQLEGFKKQVNDSFSQEAKERHTLVHELKNLQRLNESMTR 231
Cdd:COG1322     3 LQERLTGEFENLANEILEEKLEKFQEQNEERLDQLLKPLRETLDEFEKKLEETEKRRAESFGSLSERLEQLDEAQQQLSQ 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 232 EAVNLTQALKgDNKQQGNWGEVVLARVLAESGLREGHEYQTQVNLQNDAGKRYQPDVIVHLPQDKQVVVDSKMALVAFER 311
Cdd:COG1322    83 EVGNLTRALK-NKKTRGNWGEVQLERILEDAGLPEGCEYEEQVSLSNEDGSRLRPDVIVRLPGGKWLVIDAKFPLEAYER 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 312 YFNAETDQQRDAALRDHLASLRAHIKGLSQKDYHQLKGIQSLDYVLMFIPVEPAFQVAIQADPSLVKDAMEQNIILVSPT 391
Cdd:COG1322   162 LVEAEDEEEREAALKAHARSVRKHIKDLSEKDYWDLIPPETPDFVLMFLPIEGAYAEALERDPGLIEEAFEKRVVLVSPT 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 392 TLLVALRTIDNLWRNDRQNQNAQVIAERASKLYDKLRLFVDDMEGLGSSLDRANQSYQGAMNKLVtgrGNVIRQAESFKQ 471
Cdd:COG1322   242 TLMALLRTVQMGWRQEAQEENASEIAELLGALYDEFGRFGERLEKLGKHLDQAQKDYNQAVGKLT---GNLLRRARKLEE 318
                         330
                  ....*....|....*
gi 1046215745 472 LGVEVKKPISVGLAE 486
Cdd:COG1322   319 LGAEEKKELPELLEE 333
RmuC pfam02646
RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The ...
181-474 5.46e-130

RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures


Pssm-ID: 460637  Cd Length: 286  Bit Score: 379.15  E-value: 5.46e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 181 QSLEGLLSPLKEQLEGFKKQVNDSFSQEAKERHTLVHELKNLQRLNESMTREAVNLTQALKgDNKQQGNWGEVVLARVLA 260
Cdd:pfam02646   1 ERLDQLLKPLREKLEKFLEKVEETEKERSERLASLKEQLGELQELNQQVGDEANNLTRALK-NPKTRGNWGEVQLERILE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 261 ESGLREGHEYQTQVNLQNDAGkRYQPDVIVHLPQDKQVVVDSKMALVAFERYFNAETDQQRDAALRDHLASLRAHIKGLS 340
Cdd:pfam02646  80 QSGLREGCDYETQVSLTDEEG-RLRPDVIVKLPGGKHLVIDSKVPLEAYERYVNAEDDAEREAALKAHARSVRKHIKDLS 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 341 QKDYHQLkgiQSLDYVLMFIPVEPAFQVAIQADPSLVKDAMEQNIILVSPTTLLVALRTIDNLWRNDRQNQNAQVIAERA 420
Cdd:pfam02646 159 SKDYWDL---PSPDFVLMFIPIEGAFAEALERDPGLIEEAFRKNVVLASPTTLLALLRTVAMGWRQEAQNKNAEEIAELA 235
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1046215745 421 SKLYDKLRLFVDDMEGLGSSLDRANQSYQGAMNKLvtgRGNVIRQAESFKQLGV 474
Cdd:pfam02646 236 GELYDRFGKFGEHLEKLGKKLDQAVKSYDKAVGKL---EGNLLRRARKLEELGV 286
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
29-248 2.35e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 53.52  E-value: 2.35e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745   29 IKQKFSFQQRLLERqLESDRLLHESQQSQLKSSLAEAQQELNELDDDRDKAAFELKQAHGKVmaameklryfEAVKQERQ 108
Cdd:TIGR02168  724 LSRQISALRKDLAR-LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI----------EELEAQIE 792
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  109 QYADDINVLKEHKSELEAELREQEARHDQenlaNSEKLQLLEQAESRLKQQFELLANQLfesktaKVDQQNKQSLEGLLS 188
Cdd:TIGR02168  793 QLKEELKALREALDELRAELTLLNEEAAN----LRERLESLERRIAATERRLEDLEEQI------EELSEDIESLAAEIE 862
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1046215745  189 PLKEQLEGFKKQVN---DSFSQEAKERHTLVHELKNLQRLNESMTREAVNLTQALKGDNKQQG 248
Cdd:TIGR02168  863 ELEELIEELESELEallNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA 925
 
Name Accession Description Interval E-value
PRK10361 PRK10361
DNA recombination protein RmuC; Provisional
58-493 1.35e-177

DNA recombination protein RmuC; Provisional


Pssm-ID: 182409 [Multi-domain]  Cd Length: 475  Bit Score: 507.60  E-value: 1.35e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  58 LKSSLAEAQQELNELDDDRDkaafelkqAHGKVMAAMEKLRYFEAVKQERQQYADDINVLKEHKSELEAELREQEARHDQ 137
Cdd:PRK10361   21 LFASYQHAQQKAEQLAEREE--------MVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEA 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 138 ENLANSEKLQLLEQAESRLKQQFELLANQLFESKTAKVDQQNKQSLEGLLSPLKEQLEGFKKQVNDSFSQEAKERHTLVH 217
Cdd:PRK10361   93 AQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAH 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 218 ELKNLQRLNESMTREAVNLTQALKGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVNLQNDAGKRYQPDVIVHLPQDKQ 297
Cdd:PRK10361  173 EIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLREGYEYETQVSIENDARSRMQPDVIVRLPQGKD 252
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 298 VVVDSKMALVAFERYFNAETDQQRDAALRDHLASLRAHIKGLSQKDYHQLKGIQSLDYVLMFIPVEPAFQVAIQADPSLV 377
Cdd:PRK10361  253 VVIDAKMTLVAYERYFNAEDDYTRESALQEHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELI 332
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 378 KDAMEQNIILVSPTTLLVALRTIDNLWRNDRQNQNAQVIAERASKLYDKLRLFVDDMEGLGSSLDRANQSYQGAMNKLVT 457
Cdd:PRK10361  333 TEALKNNIMLVSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKLSS 412
                         410       420       430
                  ....*....|....*....|....*....|....*...
gi 1046215745 458 GRGNVIRQAESFKQLGVEVKKPISVGLAEMA--QNEAF 493
Cdd:PRK10361  413 GRGNVLAQAEAFRGLGVEIKREINPDLAEQAvsQDEEY 450
RmuC COG1322
DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and ...
152-486 2.17e-147

DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and repair];


Pssm-ID: 440933  Cd Length: 342  Bit Score: 425.74  E-value: 2.17e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 152 AESRLKQQFELLANQLFESKTAKVDQQNKQSLEGLLSPLKEQLEGFKKQVNDSFSQEAKERHTLVHELKNLQRLNESMTR 231
Cdd:COG1322     3 LQERLTGEFENLANEILEEKLEKFQEQNEERLDQLLKPLRETLDEFEKKLEETEKRRAESFGSLSERLEQLDEAQQQLSQ 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 232 EAVNLTQALKgDNKQQGNWGEVVLARVLAESGLREGHEYQTQVNLQNDAGKRYQPDVIVHLPQDKQVVVDSKMALVAFER 311
Cdd:COG1322    83 EVGNLTRALK-NKKTRGNWGEVQLERILEDAGLPEGCEYEEQVSLSNEDGSRLRPDVIVRLPGGKWLVIDAKFPLEAYER 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 312 YFNAETDQQRDAALRDHLASLRAHIKGLSQKDYHQLKGIQSLDYVLMFIPVEPAFQVAIQADPSLVKDAMEQNIILVSPT 391
Cdd:COG1322   162 LVEAEDEEEREAALKAHARSVRKHIKDLSEKDYWDLIPPETPDFVLMFLPIEGAYAEALERDPGLIEEAFEKRVVLVSPT 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 392 TLLVALRTIDNLWRNDRQNQNAQVIAERASKLYDKLRLFVDDMEGLGSSLDRANQSYQGAMNKLVtgrGNVIRQAESFKQ 471
Cdd:COG1322   242 TLMALLRTVQMGWRQEAQEENASEIAELLGALYDEFGRFGERLEKLGKHLDQAQKDYNQAVGKLT---GNLLRRARKLEE 318
                         330
                  ....*....|....*
gi 1046215745 472 LGVEVKKPISVGLAE 486
Cdd:COG1322   319 LGAEEKKELPELLEE 333
RmuC pfam02646
RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The ...
181-474 5.46e-130

RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures


Pssm-ID: 460637  Cd Length: 286  Bit Score: 379.15  E-value: 5.46e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 181 QSLEGLLSPLKEQLEGFKKQVNDSFSQEAKERHTLVHELKNLQRLNESMTREAVNLTQALKgDNKQQGNWGEVVLARVLA 260
Cdd:pfam02646   1 ERLDQLLKPLREKLEKFLEKVEETEKERSERLASLKEQLGELQELNQQVGDEANNLTRALK-NPKTRGNWGEVQLERILE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 261 ESGLREGHEYQTQVNLQNDAGkRYQPDVIVHLPQDKQVVVDSKMALVAFERYFNAETDQQRDAALRDHLASLRAHIKGLS 340
Cdd:pfam02646  80 QSGLREGCDYETQVSLTDEEG-RLRPDVIVKLPGGKHLVIDSKVPLEAYERYVNAEDDAEREAALKAHARSVRKHIKDLS 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 341 QKDYHQLkgiQSLDYVLMFIPVEPAFQVAIQADPSLVKDAMEQNIILVSPTTLLVALRTIDNLWRNDRQNQNAQVIAERA 420
Cdd:pfam02646 159 SKDYWDL---PSPDFVLMFIPIEGAFAEALERDPGLIEEAFRKNVVLASPTTLLALLRTVAMGWRQEAQNKNAEEIAELA 235
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1046215745 421 SKLYDKLRLFVDDMEGLGSSLDRANQSYQGAMNKLvtgRGNVIRQAESFKQLGV 474
Cdd:pfam02646 236 GELYDRFGKFGEHLEKLGKKLDQAVKSYDKAVGKL---EGNLLRRARKLEELGV 286
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
29-248 2.35e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 53.52  E-value: 2.35e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745   29 IKQKFSFQQRLLERqLESDRLLHESQQSQLKSSLAEAQQELNELDDDRDKAAFELKQAHGKVmaameklryfEAVKQERQ 108
Cdd:TIGR02168  724 LSRQISALRKDLAR-LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI----------EELEAQIE 792
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  109 QYADDINVLKEHKSELEAELREQEARHDQenlaNSEKLQLLEQAESRLKQQFELLANQLfesktaKVDQQNKQSLEGLLS 188
Cdd:TIGR02168  793 QLKEELKALREALDELRAELTLLNEEAAN----LRERLESLERRIAATERRLEDLEEQI------EELSEDIESLAAEIE 862
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1046215745  189 PLKEQLEGFKKQVN---DSFSQEAKERHTLVHELKNLQRLNESMTREAVNLTQALKGDNKQQG 248
Cdd:TIGR02168  863 ELEELIEELESELEallNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA 925
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
43-268 2.94e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 53.40  E-value: 2.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  43 QLESDRLLHESQQSQLKSSLAEAQQELNELDDDRDKAAFELKQAHGKVMAAMEKLRYFEA-VKQERQQYADDINVLKEHK 121
Cdd:COG1196   299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAeLAEAEEALLEAEAELAEAE 378
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 122 SELEAELREQEARHDQENLANSEKLQLLEQAESRLKQQFELLANQLFESKTAKVDQQNKQSLEGLLSPLKEQLEGFKKQV 201
Cdd:COG1196   379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1046215745 202 NDSFSQEAKERHTLVHELKNLQRLNESMTREAVNLTQALKGDNKQQGNWGEVVLARVLAESGLREGH 268
Cdd:COG1196   459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
3-203 7.76e-07

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 52.15  E-value: 7.76e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745    3 WIIEHQAplIAAISGalVSGGVVGWW--IKQKFSFQQRL--LERQLESDRLLHESQQSQLKSSLAEAQQELNELDDD--- 75
Cdd:pfam12128  226 WIRDIQA--IAGIMK--IRPEFTKLQqeFNTLESAELRLshLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQwke 301
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745   76 -RDKAAFELKQAHGKVMAAMEKLRYFEAvkQERQQYADDINVLKEHKSEL---EAELREQEARHD-QENLANS--EKLQL 148
Cdd:pfam12128  302 kRDELNGELSAADAAVAKDRSELEALED--QHGAFLDADIETAAADQEQLpswQSELENLEERLKaLTGKHQDvtAKYNR 379
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1046215745  149 LEQA-ESRLKQQFELLANQLFESKTAKVDQQNKQS--LEGLLSPLKEQLEGFKKQVND 203
Cdd:pfam12128  380 RRSKiKEQNNRDIAGIKDKLAKIREARDRQLAVAEddLQALESELREQLEAGKLEFNE 437
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
28-372 1.73e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.83  E-value: 1.73e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745   28 WIKQKFSFQQRLLERQLESDRLlhESQQSQLKSSLAEAQQELNELDDDRDKAAFELKQAHGKVMAAMEKLryfEAVKQER 107
Cdd:TIGR02168  230 LVLRLEELREELEELQEELKEA--EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI---SRLEQQK 304
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  108 QQYADDINVLKEHKSELEAELREQEARHDQENlansEKLQLLEQAESRLKQQFELLANQLFESKtakvdqQNKQSLEGLL 187
Cdd:TIGR02168  305 QILRERLANLERQLEELEAQLEELESKLDELA----EELAELEEKLEELKEELESLEAELEELE------AELEELESRL 374
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  188 SPLKEQLEGFKKQVNDSFSQEAKERHTLVHELKNLQRLNESMTREAVNLTQALKGDNKQQgnwgevvlarvLAESGLREG 267
Cdd:TIGR02168  375 EELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE-----------LKELQAELE 443
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  268 HEYQTQVNLQNDagkryQPDVIVHLPQDKQVVVDSKMALVAFERYFNaeTDQQRDAALRDHLASLRAHIKGLSQKDYHQL 347
Cdd:TIGR02168  444 ELEEELEELQEE-----LERLEEALEELREELEEAEQALDAAERELA--QLQARLDSLERLQENLEGFSEGVKALLKNQS 516
                          330       340
                   ....*....|....*....|....*
gi 1046215745  348 KGIQSLDYVLMFIPVEPAFQVAIQA 372
Cdd:TIGR02168  517 GLSGILGVLSELISVDEGYEAAIEA 541
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
38-224 2.68e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 50.45  E-value: 2.68e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745   38 RLLERQLESDRLLHESQQ--SQLKSSLAEAQQELNELDDDRDKAAFELKQAHGKVMAAMEKLryfEAVKQERQQYADDIN 115
Cdd:TIGR02169  692 SLQSELRRIENRLDELSQelSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI---ENVKSELKELEARIE 768
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  116 VLKEHKSELEAELREQEARHDQENLANSEK---------------LQLLEQAESRLKQQFELLA-------NQLFESKTA 173
Cdd:TIGR02169  769 ELEEDLHKLEEALNDLEARLSHSRIPEIQAelskleeevsriearLREIEQKLNRLTLEKEYLEkeiqelqEQRIDLKEQ 848
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1046215745  174 KVDQQNKQ-SLEGLLSPLKEQLEGFKKQVND---SFSQEAKERHTLVHELKNLQR 224
Cdd:TIGR02169  849 IKSIEKEIeNLNGKKEELEEELEELEAALRDlesRLGDLKKERDELEAQLRELER 903
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
36-241 3.22e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 49.94  E-value: 3.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  36 QQRLLERQLESDRLLHESQQSQLksSLAEAQQELNELDDDRDKAAFELKQAHgkvmaameklryFEAVKQERQQYADDIN 115
Cdd:COG1196   240 ELEELEAELEELEAELEELEAEL--AELEAELEELRLELEELELELEEAQAE------------EYELLAELARLEQDIA 305
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 116 VLKEHKSELEAELREQEARHDQENlansEKLQLLEQAESRLKQQFELLANQLFESKTAKVDQQNKQS-LEGLLSPLKEQL 194
Cdd:COG1196   306 RLEERRRELEERLEELEEELAELE----EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLeAEAELAEAEEEL 381
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1046215745 195 EGFKKQVNDSFSQEAKERHTLVHELKNLQRLNESMTREAVNLTQALK 241
Cdd:COG1196   382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
42-238 2.01e-05

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 47.32  E-value: 2.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  42 RQLESDRLLHESQQSQLKSSLAEAQQELNELDDDRDKAAFELKqahgkvmaamEKLRYFEAVKQERQQYADDINVLKEHK 121
Cdd:TIGR04523 324 EEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELE----------EKQNEIEKLKKENQSYKQEIKNLESQI 393
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 122 SELEAELREQE--ARHDQENLANSEK-LQLLEQAESRLKQQFELLANQLFESKTAKVDQQNK-QSLEGLLSPLKEQLEGF 197
Cdd:TIGR04523 394 NDLESKIQNQEklNQQKDEQIKKLQQeKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIiKNLDNTRESLETQLKVL 473
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1046215745 198 KKQVND---SFSQEAKERHTLVHELKNLQRLNESMTREAVNLTQ 238
Cdd:TIGR04523 474 SRSINKikqNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTK 517
Golgin_A5 pfam09787
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ...
72-246 2.99e-05

Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.


Pssm-ID: 462900 [Multi-domain]  Cd Length: 305  Bit Score: 45.90  E-value: 2.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  72 LDDDRDKAAFELKQAHGKVMAAMEKLRyfeavkQERQQYADDINVLKEHKSELEAELREQEARHDQENLANSEKLQLLE- 150
Cdd:pfam09787  27 IASLKEGSGVEGLDSSTALTLELEELR------QERDLLREEIQKLRGQIQQLRTELQELEAQQQEEAESSREQLQELEe 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 151 ------------QAE-SRLKQQFELLANQLFESKTAKVDQQnkQSLEGLLSPLKEQLEgfKKQVNDSFSQEAKER-HTLV 216
Cdd:pfam09787 101 qlatersarreaEAElERLQEELRYLEEELRRSKATLQSRI--KDREAEIEKLRNQLT--SKSQSSSSQSELENRlHQLT 176
                         170       180       190
                  ....*....|....*....|....*....|
gi 1046215745 217 HELKNLQRLNESMTREAVNLTQALKGDNKQ 246
Cdd:pfam09787 177 ETLIQKQTMLEALSTEKNSLVLQLERMEQQ 206
PRK12704 PRK12704
phosphodiesterase; Provisional
11-159 4.08e-05

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 45.92  E-value: 4.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  11 LIAAISGALVsGGVVGWWIKQKFSfQQRLLERQLESDRLLHESQ---QSQLKSSLAEAQQEL----NELDDDRDKAAFEL 83
Cdd:PRK12704    7 ILIALVALVV-GAVIGYFVRKKIA-EAKIKEAEEEAKRILEEAKkeaEAIKKEALLEAKEEIhklrNEFEKELRERRNEL 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  84 KQAHGKVMAAME----KLRYFEAVKQERQQYADDINVLKEHKSELEAELREQEARHDQ--ENLAN--SE--KLQLLEQAE 153
Cdd:PRK12704   85 QKLEKRLLQKEEnldrKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQelERISGltAEeaKEILLEKVE 164

                  ....*.
gi 1046215745 154 SRLKQQ 159
Cdd:PRK12704  165 EEARHE 170
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
62-246 1.05e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.29  E-value: 1.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745   62 LAEAQQELNELDDDRDKAAFELKQAHGKvMAAMEKLRyfEAVKQERQQYADDINVLkehksELEAELREQEARHDQENLA 141
Cdd:COG4913    612 LAALEAELAELEEELAEAEERLEALEAE-LDALQERR--EALQRLAEYSWDEIDVA-----SAEREIAELEAELERLDAS 683
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  142 NSEkLQLLEQAESRLKQQFELLANQLFESKTAKVDQQNK-QSLEGLLSPLKEQLEGFKKQVNDSFSQEAKERHTLVHELK 220
Cdd:COG4913    684 SDD-LAALEEQLEELEAELEELEEELDELKGEIGRLEKElEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA 762
                          170       180
                   ....*....|....*....|....*.
gi 1046215745  221 NLQRLNESMTREAVNLTQALKGDNKQ 246
Cdd:COG4913    763 VERELRENLEERIDALRARLNRAEEE 788
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
36-137 1.54e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 44.67  E-value: 1.54e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745   36 QQRLLERQLESDRLLHESQQ-----SQLKSSLAEAQQELNELDDDRDKAAFELKQAHGKVMAAMEKLryfEAVKQERQQY 110
Cdd:TIGR02169  398 KREINELKRELDRLQEELQRlseelADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL---SKYEQELYDL 474
                           90       100
                   ....*....|....*....|....*..
gi 1046215745  111 ADDINVLKEHKSELEAELREQEARHDQ 137
Cdd:TIGR02169  475 KEEYDRVEKELSKLQRELAEAEAQARA 501
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
52-242 2.60e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.21  E-value: 2.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  52 ESQQSQLKSSLAEAQQELNELDDDRDKAAFELKQAHGKVMAAMEKLRyfeAVKQERQQYADDINVLKEHKSELEAELREQ 131
Cdd:COG4942    26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR---ALEQELAALEAELAELEKEIAELRAELEAQ 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 132 EAR---------------------HDQENLANSEKLQLLEQAESRLKQQFELLANQLFESKTAKVDQQNKQSlegLLSPL 190
Cdd:COG4942   103 KEElaellralyrlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA---ELEAL 179
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1046215745 191 KEQLEGFKKQVNDSFSQEAKERHTLVHELKNLQRLNESMTREAVNLTQALKG 242
Cdd:COG4942   180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
35-244 3.84e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 43.08  E-value: 3.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  35 FQQRLLERQLESDRLLHESQQSQLKSSLAEAQQELNELDDDRDkaafELKQAHGKVMAAMEKLRYFEAVKQERQQYAddi 114
Cdd:COG3206   201 FRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLA----ALRAQLGSGPDALPELLQSPVIQQLRAQLA--- 273
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 115 nvlkehksELEAELREQEARHdqenLANSEKLQLLEQAESRLKQQFELLANQLFESKtakvdQQNKQSLEGLLSPLKEQL 194
Cdd:COG3206   274 --------ELEAELAELSARY----TPNHPDVIALRAQIAALRAQLQQEAQRILASL-----EAELEALQAREASLQAQL 336
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1046215745 195 EGFKKQVNdSFSQEAKERHTLVHELKNLQRLNESMT--REAVNLTQALKGDN 244
Cdd:COG3206   337 AQLEARLA-ELPELEAELRRLEREVEVARELYESLLqrLEEARLAEALTVGN 387
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
57-240 3.88e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 43.37  E-value: 3.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745   57 QLKSSLAEAQQELNELDDDRDKA-AFELKQAHGKVMAAMEKLRyfeavkQERQQYADDINVLKEHKSELEAELREQEARH 135
Cdd:COG4913    259 ELAERYAAARERLAELEYLRAALrLWFAQRRLELLEAELEELR------AELARLEAELERLEARLDALREELDELEAQI 332
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  136 DQENLANSEKLQ-LLEQAESRLKQ------QFELLANQLFES--KTAKVDQQNKQSLEGLLSPLKEQLEGFKKQVNDSFS 206
Cdd:COG4913    333 RGNGGDRLEQLErEIERLERELEErerrraRLEALLAALGLPlpASAEEFAALRAEAAALLEALEEELEALEEALAEAEA 412
                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1046215745  207 QEA---KERHTLVHELKNLQRLNESMTREAVNLTQAL 240
Cdd:COG4913    413 ALRdlrRELRELEAEIASLERRKSNIPARLLALRDAL 449
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
27-167 5.38e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 42.98  E-value: 5.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745   27 WWIKQKFSFQQRLLERQLESDRLLHESQQSQLKSSLAEAQQELNELDDDRDKAAFELKQAHGKVMAAMEKLRyfEAVKQE 106
Cdd:COG4913    283 LWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLEREL--EERERR 360
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1046215745  107 RQQYADDINVLKEHKSELEAELREQEARHDQENLANSEKLQLLEQAESRLKQQFELLANQL 167
Cdd:COG4913    361 RARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRREL 421
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
29-212 7.38e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.06  E-value: 7.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  29 IKQKFSFQQRLLeRQLESDRLLHESQQSQLKSSLAEAQQELNELDDD---RDKAAFELKQAHGKVM--------AAMEKL 97
Cdd:COG4942    60 LERRIAALARRI-RALEQELAALEAELAELEKEIAELRAELEAQKEElaeLLRALYRLGRQPPLALllspedflDAVRRL 138
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  98 RYFEAVKQERQQYADDINVLKEHKSELEAELREQEARHDQENLANSEKLQLLEQAESRLKQQFELLANQLFESKTAKVD- 176
Cdd:COG4942   139 QYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAEl 218
                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1046215745 177 QQNKQSLEGLLSPLKEQLEGFKKQVNDSFSQEAKER 212
Cdd:COG4942   219 QQEAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
54-239 9.95e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 42.03  E-value: 9.95e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745   54 QQSQLKSSLAEAQQELNELDDDRDKAAFELKQAHGKVM-----------AAMEKLRYFEAVKQERQQYAD-------DIN 115
Cdd:pfam15921  591 EKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSdlelekvklvnAGSERLRAVKDIKQERDQLLNevktsrnELN 670
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  116 VLKEHKSELEAELREQEarHDQENLANSEKLQL------LEQAESRLKQ---------QFELLANQLFESKTAKVD--QQ 178
Cdd:pfam15921  671 SLSEDYEVLKRNFRNKS--EEMETTTNKLKMQLksaqseLEQTRNTLKSmegsdghamKVAMGMQKQITAKRGQIDalQS 748
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1046215745  179 NKQSLEGLLSPLKEQlEGFKKQVNDSFSQE----AKERHTLVHELKNL----QRLNESMTREAVNLTQA 239
Cdd:pfam15921  749 KIQFLEEAMTNANKE-KHFLKEEKNKLSQElstvATEKNKMAGELEVLrsqeRRLKEKVANMEVALDKA 816
PTZ00121 PTZ00121
MAEBL; Provisional
57-212 1.16e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.67  E-value: 1.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745   57 QLKSSLAEAQQELNELD--DDRDKAAFELKQAHGKVMA-----AMEKLRYFEAVKQERQQYADDINVLKEHKSELEAELR 129
Cdd:PTZ00121  1487 EAKKKAEEAKKKADEAKkaAEAKKKADEAKKAEEAKKAdeakkAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKA 1566
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  130 EQEARHDQENLANSEKLQLLEQAEsrlKQQFELLANQLFESKTAKVDQQNKQSLEGLLSPLKEQLEGFKKQVNDSFSQEA 209
Cdd:PTZ00121  1567 EEAKKAEEDKNMALRKAEEAKKAE---EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643

                   ...
gi 1046215745  210 KER 212
Cdd:PTZ00121  1644 EEK 1646
DUF4472 pfam14739
Domain of unknown function (DUF4472); This family is specific to the Chordates. Some members ...
31-142 2.80e-03

Domain of unknown function (DUF4472); This family is specific to the Chordates. Some members also carry Kinesin-motor domains at their N-terminus, Kinesin, pfam00225.


Pssm-ID: 464291 [Multi-domain]  Cd Length: 107  Bit Score: 37.28  E-value: 2.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  31 QKFSFQQRLLERQLESDRLL--HESQQSQLKSSLAEAQQELNELDDDRDKAAFELKQAHgkvmaamEKLRYFEAvkqERQ 108
Cdd:pfam14739   4 EKLQISKALVDLQIENNKLReqYEAEKFELKNKLLNLENRVLELELRLEKAAEEIQDLR-------ERLRELED---DRR 73
                          90       100       110
                  ....*....|....*....|....*....|....
gi 1046215745 109 QYADDINVLKEHKSELEAELREQEARhdQENLAN 142
Cdd:pfam14739  74 ELAEEFVALKKNYQALSKELEAEVAK--NQELSL 105
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
31-340 3.19e-03

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 40.49  E-value: 3.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745   31 QKFSFQQRLLERQLESDRLLHESQQSQLKSSLAEAQQELNELDDDRDkaafelkqahgkvmaAMEKLRYFEAVKQE--RQ 108
Cdd:pfam15921   81 EEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERD---------------AMADIRRRESQSQEdlRN 145
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  109 QYADDINVLKEHKSELEAELREQEARHDQEN---LANSEKLQLL-------EQAESRLKQQFELLANQLFESKTAKVDQQ 178
Cdd:pfam15921  146 QLQNTVHELEAAKCLKEDMLEDSNTQIEQLRkmmLSHEGVLQEIrsilvdfEEASGKKIYEHDSMSTMHFRSLGSAISKI 225
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  179 NKQ------SLEGLLSPLKEQLEGFKKQVNDSFS------QEAKERHTLVHELK--NLQRLNESMTREAVNLTQALKGDN 244
Cdd:pfam15921  226 LREldteisYLKGRIFPVEDQLEALKSESQNKIElllqqhQDRIEQLISEHEVEitGLTEKASSARSQANSIQSQLEIIQ 305
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  245 KQQGNWGEVVLARvlaesgLREGHEYQTQVNLQNDAGKRYQPDVIVHLpqDKQVVV-DSKMALVAFERYFNAETDQQRDA 323
Cdd:pfam15921  306 EQARNQNSMYMRQ------LSDLESTVSQLRSELREAKRMYEDKIEEL--EKQLVLaNSELTEARTERDQFSQESGNLDD 377
                          330
                   ....*....|....*..
gi 1046215745  324 ALRDHLASLRAHIKGLS 340
Cdd:pfam15921  378 QLQKLLADLHKREKELS 394
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
78-233 4.64e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.92  E-value: 4.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  78 KAAFELKQAHGKVMAAMEKLRYFEAVKQERQQYADDINVLKEHKSELEAELREQEARHDQENLANSEKLQLLEQAESRLK 157
Cdd:COG1196   219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1046215745 158 QqfeLLANQLFESKTAKVDQQNKQSLEGLLSPLKEQLEGFKKQVNDSFSQEAKERHTLVHELKNLQRLNESMTREA 233
Cdd:COG1196   299 R---LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
33-218 7.04e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 38.95  E-value: 7.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745  33 FSFQQRL-LERQLESDRLLHESQQSQL----KSSLAEAQQELNELDddrdKAAFELKQAHGKVMAAMEKLRYFEAVKQER 107
Cdd:pfam17380 336 YAEQERMaMERERELERIRQEERKRELerirQEEIAMEISRMRELE----RLQMERQQKNERVRQELEAARKVKILEEER 411
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046215745 108 QQYADDINVLKEHKSELEAELREQEARHDQENLANS------EKLQLLEQAEsRLKQQFE-----LLANQLFESKTAKVD 176
Cdd:pfam17380 412 QRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREmervrlEEQERQQQVE-RLRQQEEerkrkKLELEKEKRDRKRAE 490
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1046215745 177 QQNKQSLEGLLSPLKEQL--EGFKKQVndsFSQEAKERHTLVHE 218
Cdd:pfam17380 491 EQRRKILEKELEERKQAMieEERKRKL---LEKEMEERQKAIYE 531
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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