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MULTISPECIES: type IV secretion system protein TraC [Enterobacteriaceae]
Protein Classification
type IV secretion system protein TraC ( domain architecture ID 11486812 )
type IV secretion system protein TraC is one of the proteins encoded by the transfer (tra) region of the F pilus assembly Type-IV secretion system for plasmid transfer; is required for the assembly of mature F-pilin subunits into extended F pili
List of domain hits
Name
Accession
Description
Interval
E-value
PRK13721
PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
32-879
0e+00
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain]
Cd Length: 844
Bit Score: 1601.69
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 32 T LG S M N FPQFSR I LPY K DYD SAT GLF I N NK T V GFM F EA R PL P GA DK SIV AT L E H L LR S KLPRG V P VSF HL V SSKLVG ND I 111
Cdd:PRK13721 1 V LG E M S FPQFSR L LPY R DYD QES GLF M N DT T M GFM L EA I PL N GA NE SIV EA L D H M LR T KLPRG I P LCI HL M SSKLVG DR I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 112 D YGLREF R WSG K QA RK FNAITRAYY L RAA E TQFPLP DNLD LPLTLR N YRV Y IS C C V P R KK N S TTQ I V E L EN QI K VL RASL 191
Cdd:PRK13721 81 E YGLREF S WSG E QA ER FNAITRAYY M RAA L TQFPLP EGMN LPLTLR H YRV F IS Y C S P S KK K S RAD I L E M EN LV K II RASL 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 192 G GA Y I P T RIL DA AGMVELM RE L IN PD P HEM Y RVPYK LDPY Q DLNYQCV D DSFD MQ V T A GH L KI G r L GRD G KECVT R VT N Y 271
Cdd:PRK13721 161 Q GA S I T T QTV DA QAFISIV RE M IN HR P DSL Y PKRRQ LDPY S DLNYQCV E DSFD LK V R A DY L TL G - L REN G RNSTA R IL N F 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 272 HL ECD PEIAFLW TA ADNY A NLLNPELSISCPF VI TLTL M VEDQVKTQ N EANLK F MD V EKKSKTSYAK Y FP N V I KE MQ EWG 351
Cdd:PRK13721 240 HL AKN PEIAFLW QM ADNY S NLLNPELSISCPF IL TLTL E VEDQVKTQ S EANLK Y MD L EKKSKTSYAK W FP S V E KE AK EWG 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 352 DI RQRL AT NQ T SLVSYF F NIT TYTA DN A E AS L AT EQ QV LNS Y RK G GF Q LI PA R YH H L RNFL AMM PF KC GEGLFK E L QA AG 431
Cdd:PRK13721 320 EL RQRL GS NQ S SLVSYF L NIT AFCP DN N E TA L EV EQ DI LNS F RK N GF E LI SP R FN H M RNFL TCL PF MA GEGLFK D L KE AG 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 432 VV K RAE T F Q VANL L P I VAD S PL A PAGLLAPTYRNQLAFID L F YE GMNNTN F NMAVCGTSGAGKTGLIQPLIRSVLDSGGF 511
Cdd:PRK13721 400 VV Q RAE S F N VANL M P L VAD N PL T PAGLLAPTYRNQLAFID I F FR GMNNTN Y NMAVCGTSGAGKTGLIQPLIRSVLDSGGF 479
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 512 A W VFDMGDGYKSLCENMGGVYLDG DS L K FNPFANI ldd ANF D L SAERIRDQ M SVMASPNGNLDEVHEGLLLQAVRA A WL S 591
Cdd:PRK13721 480 A V VFDMGDGYKSLCENMGGVYLDG ET L R FNPFANI --- TDI D Q SAERIRDQ L SVMASPNGNLDEVHEGLLLQAVRA S WL A 556
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 592 K R N K ARIDDVV A FL QSEK DSE E YADSP GV RSRLD D MI I LLDQYT V NG L YGEYFNSDEPSL H DDARMVVLELGGLE S R Q SL 671
Cdd:PRK13721 557 K K N R ARIDDVV D FL KNAR DSE Q YADSP TI RSRLD E MI V LLDQYT A NG T YGEYFNSDEPSL R DDARMVVLELGGLE D R P SL 636
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 672 LVAVMFSLIIYIENRMY QS PR S LKKLNVIDEGWRLLDFKN E KVG T FIEKGYRTARRHTGAYITITQNIVDFDS PT ASSAA 751
Cdd:PRK13721 637 LVAVMFSLIIYIENRMY RT PR N LKKLNVIDEGWRLLDFKN H KVG E FIEKGYRTARRHTGAYITITQNIVDFDS DK ASSAA 716
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 752 RAAWGNSSYK A ILKQSAKEFAKYNQLYPDQFS K LE K DMI N GFG S AK E QWFSSF M LQVE ANC SWHRLFVDPLSRAMYSS K G 831
Cdd:PRK13721 717 RAAWGNSSYK I ILKQSAKEFAKYNQLYPDQFS P LE R DMI G GFG A AK D QWFSSF L LQVE NHS SWHRLFVDPLSRAMYSS D G 796
810 820 830 840
....*....|....*....|....*....|....*....|....*...
gi 1048234965 832 PDFE YMKAR R Q EG VD IH D AV YG LA CHN F KE EMA E LE SRIPVNDMEDKQ 879
Cdd:PRK13721 797 PDFE FVQQK R K EG LS IH E AV WQ LA WKK F GP EMA S LE AWLEEHEKYRSV 844
Name
Accession
Description
Interval
E-value
PRK13721
PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
32-879
0e+00
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain]
Cd Length: 844
Bit Score: 1601.69
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 32 T LG S M N FPQFSR I LPY K DYD SAT GLF I N NK T V GFM F EA R PL P GA DK SIV AT L E H L LR S KLPRG V P VSF HL V SSKLVG ND I 111
Cdd:PRK13721 1 V LG E M S FPQFSR L LPY R DYD QES GLF M N DT T M GFM L EA I PL N GA NE SIV EA L D H M LR T KLPRG I P LCI HL M SSKLVG DR I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 112 D YGLREF R WSG K QA RK FNAITRAYY L RAA E TQFPLP DNLD LPLTLR N YRV Y IS C C V P R KK N S TTQ I V E L EN QI K VL RASL 191
Cdd:PRK13721 81 E YGLREF S WSG E QA ER FNAITRAYY M RAA L TQFPLP EGMN LPLTLR H YRV F IS Y C S P S KK K S RAD I L E M EN LV K II RASL 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 192 G GA Y I P T RIL DA AGMVELM RE L IN PD P HEM Y RVPYK LDPY Q DLNYQCV D DSFD MQ V T A GH L KI G r L GRD G KECVT R VT N Y 271
Cdd:PRK13721 161 Q GA S I T T QTV DA QAFISIV RE M IN HR P DSL Y PKRRQ LDPY S DLNYQCV E DSFD LK V R A DY L TL G - L REN G RNSTA R IL N F 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 272 HL ECD PEIAFLW TA ADNY A NLLNPELSISCPF VI TLTL M VEDQVKTQ N EANLK F MD V EKKSKTSYAK Y FP N V I KE MQ EWG 351
Cdd:PRK13721 240 HL AKN PEIAFLW QM ADNY S NLLNPELSISCPF IL TLTL E VEDQVKTQ S EANLK Y MD L EKKSKTSYAK W FP S V E KE AK EWG 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 352 DI RQRL AT NQ T SLVSYF F NIT TYTA DN A E AS L AT EQ QV LNS Y RK G GF Q LI PA R YH H L RNFL AMM PF KC GEGLFK E L QA AG 431
Cdd:PRK13721 320 EL RQRL GS NQ S SLVSYF L NIT AFCP DN N E TA L EV EQ DI LNS F RK N GF E LI SP R FN H M RNFL TCL PF MA GEGLFK D L KE AG 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 432 VV K RAE T F Q VANL L P I VAD S PL A PAGLLAPTYRNQLAFID L F YE GMNNTN F NMAVCGTSGAGKTGLIQPLIRSVLDSGGF 511
Cdd:PRK13721 400 VV Q RAE S F N VANL M P L VAD N PL T PAGLLAPTYRNQLAFID I F FR GMNNTN Y NMAVCGTSGAGKTGLIQPLIRSVLDSGGF 479
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 512 A W VFDMGDGYKSLCENMGGVYLDG DS L K FNPFANI ldd ANF D L SAERIRDQ M SVMASPNGNLDEVHEGLLLQAVRA A WL S 591
Cdd:PRK13721 480 A V VFDMGDGYKSLCENMGGVYLDG ET L R FNPFANI --- TDI D Q SAERIRDQ L SVMASPNGNLDEVHEGLLLQAVRA S WL A 556
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 592 K R N K ARIDDVV A FL QSEK DSE E YADSP GV RSRLD D MI I LLDQYT V NG L YGEYFNSDEPSL H DDARMVVLELGGLE S R Q SL 671
Cdd:PRK13721 557 K K N R ARIDDVV D FL KNAR DSE Q YADSP TI RSRLD E MI V LLDQYT A NG T YGEYFNSDEPSL R DDARMVVLELGGLE D R P SL 636
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 672 LVAVMFSLIIYIENRMY QS PR S LKKLNVIDEGWRLLDFKN E KVG T FIEKGYRTARRHTGAYITITQNIVDFDS PT ASSAA 751
Cdd:PRK13721 637 LVAVMFSLIIYIENRMY RT PR N LKKLNVIDEGWRLLDFKN H KVG E FIEKGYRTARRHTGAYITITQNIVDFDS DK ASSAA 716
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 752 RAAWGNSSYK A ILKQSAKEFAKYNQLYPDQFS K LE K DMI N GFG S AK E QWFSSF M LQVE ANC SWHRLFVDPLSRAMYSS K G 831
Cdd:PRK13721 717 RAAWGNSSYK I ILKQSAKEFAKYNQLYPDQFS P LE R DMI G GFG A AK D QWFSSF L LQVE NHS SWHRLFVDPLSRAMYSS D G 796
810 820 830 840
....*....|....*....|....*....|....*....|....*...
gi 1048234965 832 PDFE YMKAR R Q EG VD IH D AV YG LA CHN F KE EMA E LE SRIPVNDMEDKQ 879
Cdd:PRK13721 797 PDFE FVQQK R K EG LS IH E AV WQ LA WKK F GP EMA S LE AWLEEHEKYRSV 844
TraC-F-type
TIGR02746 type-IV secretion system protein TraC; The protein family described here is common among the F, ...
45-857
0e+00
type-IV secretion system protein TraC; The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Pssm-ID: 274279 [Multi-domain]
Cd Length: 797
Bit Score: 870.11
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 45 LPY KD YD SAT G L F I N NKTV GF MF E AR PL P GAD K S I V AT L EH LLR SK LP R G VPVSFH L VS S KLV G NDI D YGLRE F RWS G KQ 124
Cdd:TIGR02746 2 LPY RA YD EES G I F M N RHSM GF GL E LT PL S GAD E S L V ES L SS LLR TD LP E G TDIQVL L WG S PQI G PFL D RNEEQ F SQN G GI 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 125 AR K FNAITRA YYL R AA ETQ F plpd NLDLPL TLR NY R VYI S CCV P R K KNSTTQ I V EL ENQIKVLRAS L GG A YIPT R IL DA A 204
Cdd:TIGR02746 82 LE K LARNRVK YYL N AA QKG F ---- FKNSGV TLR DF R LFL S VSI P F K SPNEDV I Q EL RSLRERIEST L RS A GFGC R RV DA E 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 205 GMVE L M RE LI NPDP HEMYRV P YKL DP Y Q D L NY Q C VD DSF D MQ V TA G H L KI g RLGRDGK E CV TR VTNYHLECD PE IAF LW T 284
Cdd:TIGR02746 158 DLLS L V RE ML NPDP DSIHPW P ISY DP N Q L L RD Q I VD PDT D LE V HE G G L EV - DHEDNQG E VK TR IRVFSIKRF PE EFT LW Q 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 285 AADNYAN LLNP E L S I S CPF VITL T LM VEDQVK TQNE A NL K FM D VE K KS K T S Y AK YF P NVI K EMQ E WGDI R QRL A TNQT SL 364
Cdd:TIGR02746 237 TGNLIGD LLNP S L Q I T CPF LLSF T VR VEDQVK KKAK A TA K AK D LN K QA K S S M AK WV P SLE K KLK E IKYL R EAI A SGGD SL 316
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 365 VS YFF N ITTY T ad N AEASLATEQQVLN S Y RK G GF Q L IPARYHH L RN FLA MM PF KCG EGLF KE L QA AG V V KRAETFQVA NL 444
Cdd:TIGR02746 317 VS MYY N VLLF T -- N PDNLRRDVEAAKS S F RK N GF D L AEDKRIQ L QA FLA AL PF NPT EGLF ED L KK AG R V RTLSSANAV NL 394
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 445 LP IV AD SPLAP - A GLL A PT Y R N QL AFI D L F YEGM nn TN F N M AV C G T SGAGK TGLI Q P LI RSV L DS GG FA WV F D M G DG YK S 523
Cdd:TIGR02746 395 LP LI AD WKGTK g S GLL L PT R R G QL SAF D P F DSDS -- TN Y N I AV V G G SGAGK SFFM Q E LI VDN L SR GG KV WV I D V G RS YK K 472
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 524 LCE NM GG V Y LDGD --- SLKF NPF ANILDD a NF D LSAER I RDQMSV MASP N G N L DEVHEGL L LQ A VR AAW LSKR N K A R I D D 600
Cdd:TIGR02746 473 LCE ML GG T Y IEFS pes NICL NPF TGNNVT - EI D DEIDQ I TALIAL MASP E G G L SDEQRST L EE A IL AAW KEYG N E A T I T D 551
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 601 V VAF LQ SEK D S E EY adspgvr S R LD D MIIL L DQ YT VN G L YG E YFN S d EPS L HDDA R M VVLEL GG LE S R QS L LVA V M FSL I 680
Cdd:TIGR02746 552 V QDA LQ QLE D D E ND ------- P R IK D LGKM L NP YT SH G V YG R YFN G - PNN L DFSN R F VVLEL EE LE D R PD L QAV V L FSL M 623
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 681 IY I ENR MY QS PR SLK K LNV IDE G W R LLD FK N EKVGT FIE K GYR T AR RHT GA Y ITITQ N I V DF D S pta S SA ARAA WG NS SY 760
Cdd:TIGR02746 624 VR I TGE MY LT PR KRR K ICI IDE A W S LLD GA N PQAAD FIE T GYR R AR KYG GA F ITITQ G I E DF Y S --- S PE ARAA YA NS DW 700
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 761 K A IL K QSA KEF AK YNQLY P DQ FS KL EK DM I NGFGS AK EQ w FS SFMLQVEANC S W HRLFVDP L SR AMY S SK GP D FE YMKAR 840
Cdd:TIGR02746 701 K I IL R QSA ESI AK LKAEN P FT FS PF EK RL I KSLRT AK GA - FS ELLIRSGEGS S V HRLFVDP F SR VLF S TD GP E FE EVEEL 779
810
....*....|....*..
gi 1048234965 841 R QE G VDIHD A VYG LA CH 857
Cdd:TIGR02746 780 R EQ G LSLEE A IEQ LA QK 796
VirB4
COG3451 Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ...
289-844
3.33e-107
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain]
Cd Length: 546
Bit Score: 341.16
E-value: 3.33e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 289 YAN LL N P E L SIS C P F VI T LTLMVE D QVKTQNEANL K FMDV E K K S K TSY A KYFPNVIKEMQEWGDIRQR L ATNQTS L VSYF 368
Cdd:COG3451 23 SPG LL D P L L QLP C E F IV T QSFTPL D KDEALKKLKR K RRRL E S K R K SEQ A LVDDDAESQAEDAEEALDE L QSGGER L GEVH 102
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 369 FNI T TY t AD NA E ASLATEQQ V LNSYRKG GF Q L IPARYHHLRN FL AMM P FKCGEG L FK elqaagvv KRAE T FQV A N L L P IV 448
Cdd:COG3451 103 LTL T VF - AD DL E ELEEAVRE V ESALQSA GF T L VRETLNQEEA FL SSL P GNFDYR L RR -------- RLLT T SNL A A L F P FH 173
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 449 ADSPLA P A G L - L AP T YRNQLA F I D LFYE gmn NT N F N MAVC G T SG A GK TG L IQP L IRSV L DS G GFAWV FD M G DG Y KS L CEN 527
Cdd:COG3451 174 SFELGD P W G I y L LN T RSGTPV F F D FHDG --- LD N G N TLIL G P SG S GK SF L LKL L LLQL L RY G ARIVI FD P G GS Y EI L VRA 250
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 528 M GG V Y L D --- G DSLKF NPF ANILDDAN fdls AERIRDQMSVMASPN G - N L DEVHEGLLLQ AVRA AWLSKRNKA R -- ID D V 601
Cdd:COG3451 251 L GG T Y I D lsp G SPTGL NPF DLEDTEEK ---- RDFLLELLELLLGRE G e P L TPEERAAIDR AVRA LYRRADPEE R tt LS D L 326
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 602 VAF L QSEKDSEEY A DS pgvrsrlddmiil L DQ YT VN G L YG EY F NSDEPSLHD DAR M VV LE L GG L ESRQS L LVA V MFS L II 681
Cdd:COG3451 327 YEL L KEQPEAKDL A AR ------------- L EP YT KG G S YG WL F DGPTNLDLS DAR F VV FD L TE L LDNPE L RPP V LLY L LH 393
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 682 Y I E NR MYQSPRSLKK L N VIDE G W R LLD fk N EKVGT F I E KGYR T A R RHT GA Y I TI TQ NIV DF D S pta S SA A R A AWG NS SY K 761
Cdd:COG3451 394 R I W NR LRKNNDGRPT L I VIDE A W L LLD -- N PAFAE F L E EWLK T L R KYN GA V I FA TQ SVE DF L S --- S PI A E A IIE NS AT K 468
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 762 AI L K Q SAKEFAK Y NQ L Y pd QF S KL E KDM I NGF G SA K EQ wfss F MLQVEANCSWH RL FVD P LSR A MY S S K GPDFEYMKAR R 841
Cdd:COG3451 469 IL L P Q PKADIED Y AE L L -- GL S ER E LEL I RSA G RG K RD ---- F LIKQGNGSVVF RL DLS P EEL A LL S T K PEEVAILDEL R 542
...
gi 1048234965 842 Q E G 844
Cdd:COG3451 543 A E H 545
TraC_F_IV
pfam11130 TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a ...
39-278
6.47e-67
TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a cytoplasmic, peripheral membrane protein and is one of the proteins encoded by the F transfer region of the conjugative plasmid that is required for the assembly of F pilin into the mature F pilus structure. F pili are filamentous appendages that help establish the physical contact between donor and recipient cells involved in the conjugation process.
Pssm-ID: 431669 [Multi-domain]
Cd Length: 232
Bit Score: 222.93
E-value: 6.47e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 39 P Q FS RI LPY KD YD SA TGLF I N NK - T VGF M FE AR PL P GAD K S IVA TLE H LL RSK LP R G V PV S F H L VS S KLV G NDI D Y g LR E 117
Cdd:pfam11130 1 P S FS DL LPY VA YD PE TGLF L N ED g S VGF V FE LS PL G GAD E S VRD TLE S LL SDD LP D G T PV Q F L L FA S PDI G PYL D R - LR D 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 118 F R w S G K Q ARKFN AI T -- R AYY L RAAE T QFP lpd NL D LPLT LR NY R VYI S CC VP R K KNST T Q I VE L ENQIKV L R ASL GG A Y 195
Cdd:pfam11130 80 Y R - L G E Q GGHLR AI A rp R GLF L DSGV T GSL --- SA D WRGQ LR RF R LVL S RK VP G K ADLP T P I EA L NELRDR L E ASL RS A G 155
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 196 IPT R I LD AAGMVELM R ELI NPDP HEMYRV P YKL DP YQ D LNY Q CV D DSFDMQ V T AG H L KIGRLGR dgkecv TR V TNYH L EC 275
Cdd:pfam11130 156 LAA R R LD PDDLIAWL R RWL NPDP SASWDP P ADY DP DK D IAE Q IL D SDPRLD V E AG R L YFDGEPH ------ RA V RVLS L RR 229
...
gi 1048234965 276 D PE 278
Cdd:pfam11130 230 F PE 232
Name
Accession
Description
Interval
E-value
PRK13721
PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
32-879
0e+00
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain]
Cd Length: 844
Bit Score: 1601.69
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 32 T LG S M N FPQFSR I LPY K DYD SAT GLF I N NK T V GFM F EA R PL P GA DK SIV AT L E H L LR S KLPRG V P VSF HL V SSKLVG ND I 111
Cdd:PRK13721 1 V LG E M S FPQFSR L LPY R DYD QES GLF M N DT T M GFM L EA I PL N GA NE SIV EA L D H M LR T KLPRG I P LCI HL M SSKLVG DR I 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 112 D YGLREF R WSG K QA RK FNAITRAYY L RAA E TQFPLP DNLD LPLTLR N YRV Y IS C C V P R KK N S TTQ I V E L EN QI K VL RASL 191
Cdd:PRK13721 81 E YGLREF S WSG E QA ER FNAITRAYY M RAA L TQFPLP EGMN LPLTLR H YRV F IS Y C S P S KK K S RAD I L E M EN LV K II RASL 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 192 G GA Y I P T RIL DA AGMVELM RE L IN PD P HEM Y RVPYK LDPY Q DLNYQCV D DSFD MQ V T A GH L KI G r L GRD G KECVT R VT N Y 271
Cdd:PRK13721 161 Q GA S I T T QTV DA QAFISIV RE M IN HR P DSL Y PKRRQ LDPY S DLNYQCV E DSFD LK V R A DY L TL G - L REN G RNSTA R IL N F 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 272 HL ECD PEIAFLW TA ADNY A NLLNPELSISCPF VI TLTL M VEDQVKTQ N EANLK F MD V EKKSKTSYAK Y FP N V I KE MQ EWG 351
Cdd:PRK13721 240 HL AKN PEIAFLW QM ADNY S NLLNPELSISCPF IL TLTL E VEDQVKTQ S EANLK Y MD L EKKSKTSYAK W FP S V E KE AK EWG 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 352 DI RQRL AT NQ T SLVSYF F NIT TYTA DN A E AS L AT EQ QV LNS Y RK G GF Q LI PA R YH H L RNFL AMM PF KC GEGLFK E L QA AG 431
Cdd:PRK13721 320 EL RQRL GS NQ S SLVSYF L NIT AFCP DN N E TA L EV EQ DI LNS F RK N GF E LI SP R FN H M RNFL TCL PF MA GEGLFK D L KE AG 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 432 VV K RAE T F Q VANL L P I VAD S PL A PAGLLAPTYRNQLAFID L F YE GMNNTN F NMAVCGTSGAGKTGLIQPLIRSVLDSGGF 511
Cdd:PRK13721 400 VV Q RAE S F N VANL M P L VAD N PL T PAGLLAPTYRNQLAFID I F FR GMNNTN Y NMAVCGTSGAGKTGLIQPLIRSVLDSGGF 479
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 512 A W VFDMGDGYKSLCENMGGVYLDG DS L K FNPFANI ldd ANF D L SAERIRDQ M SVMASPNGNLDEVHEGLLLQAVRA A WL S 591
Cdd:PRK13721 480 A V VFDMGDGYKSLCENMGGVYLDG ET L R FNPFANI --- TDI D Q SAERIRDQ L SVMASPNGNLDEVHEGLLLQAVRA S WL A 556
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 592 K R N K ARIDDVV A FL QSEK DSE E YADSP GV RSRLD D MI I LLDQYT V NG L YGEYFNSDEPSL H DDARMVVLELGGLE S R Q SL 671
Cdd:PRK13721 557 K K N R ARIDDVV D FL KNAR DSE Q YADSP TI RSRLD E MI V LLDQYT A NG T YGEYFNSDEPSL R DDARMVVLELGGLE D R P SL 636
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 672 LVAVMFSLIIYIENRMY QS PR S LKKLNVIDEGWRLLDFKN E KVG T FIEKGYRTARRHTGAYITITQNIVDFDS PT ASSAA 751
Cdd:PRK13721 637 LVAVMFSLIIYIENRMY RT PR N LKKLNVIDEGWRLLDFKN H KVG E FIEKGYRTARRHTGAYITITQNIVDFDS DK ASSAA 716
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 752 RAAWGNSSYK A ILKQSAKEFAKYNQLYPDQFS K LE K DMI N GFG S AK E QWFSSF M LQVE ANC SWHRLFVDPLSRAMYSS K G 831
Cdd:PRK13721 717 RAAWGNSSYK I ILKQSAKEFAKYNQLYPDQFS P LE R DMI G GFG A AK D QWFSSF L LQVE NHS SWHRLFVDPLSRAMYSS D G 796
810 820 830 840
....*....|....*....|....*....|....*....|....*...
gi 1048234965 832 PDFE YMKAR R Q EG VD IH D AV YG LA CHN F KE EMA E LE SRIPVNDMEDKQ 879
Cdd:PRK13721 797 PDFE FVQQK R K EG LS IH E AV WQ LA WKK F GP EMA S LE AWLEEHEKYRSV 844
TraC-F-type
TIGR02746 type-IV secretion system protein TraC; The protein family described here is common among the F, ...
45-857
0e+00
type-IV secretion system protein TraC; The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Pssm-ID: 274279 [Multi-domain]
Cd Length: 797
Bit Score: 870.11
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 45 LPY KD YD SAT G L F I N NKTV GF MF E AR PL P GAD K S I V AT L EH LLR SK LP R G VPVSFH L VS S KLV G NDI D YGLRE F RWS G KQ 124
Cdd:TIGR02746 2 LPY RA YD EES G I F M N RHSM GF GL E LT PL S GAD E S L V ES L SS LLR TD LP E G TDIQVL L WG S PQI G PFL D RNEEQ F SQN G GI 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 125 AR K FNAITRA YYL R AA ETQ F plpd NLDLPL TLR NY R VYI S CCV P R K KNSTTQ I V EL ENQIKVLRAS L GG A YIPT R IL DA A 204
Cdd:TIGR02746 82 LE K LARNRVK YYL N AA QKG F ---- FKNSGV TLR DF R LFL S VSI P F K SPNEDV I Q EL RSLRERIEST L RS A GFGC R RV DA E 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 205 GMVE L M RE LI NPDP HEMYRV P YKL DP Y Q D L NY Q C VD DSF D MQ V TA G H L KI g RLGRDGK E CV TR VTNYHLECD PE IAF LW T 284
Cdd:TIGR02746 158 DLLS L V RE ML NPDP DSIHPW P ISY DP N Q L L RD Q I VD PDT D LE V HE G G L EV - DHEDNQG E VK TR IRVFSIKRF PE EFT LW Q 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 285 AADNYAN LLNP E L S I S CPF VITL T LM VEDQVK TQNE A NL K FM D VE K KS K T S Y AK YF P NVI K EMQ E WGDI R QRL A TNQT SL 364
Cdd:TIGR02746 237 TGNLIGD LLNP S L Q I T CPF LLSF T VR VEDQVK KKAK A TA K AK D LN K QA K S S M AK WV P SLE K KLK E IKYL R EAI A SGGD SL 316
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 365 VS YFF N ITTY T ad N AEASLATEQQVLN S Y RK G GF Q L IPARYHH L RN FLA MM PF KCG EGLF KE L QA AG V V KRAETFQVA NL 444
Cdd:TIGR02746 317 VS MYY N VLLF T -- N PDNLRRDVEAAKS S F RK N GF D L AEDKRIQ L QA FLA AL PF NPT EGLF ED L KK AG R V RTLSSANAV NL 394
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 445 LP IV AD SPLAP - A GLL A PT Y R N QL AFI D L F YEGM nn TN F N M AV C G T SGAGK TGLI Q P LI RSV L DS GG FA WV F D M G DG YK S 523
Cdd:TIGR02746 395 LP LI AD WKGTK g S GLL L PT R R G QL SAF D P F DSDS -- TN Y N I AV V G G SGAGK SFFM Q E LI VDN L SR GG KV WV I D V G RS YK K 472
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 524 LCE NM GG V Y LDGD --- SLKF NPF ANILDD a NF D LSAER I RDQMSV MASP N G N L DEVHEGL L LQ A VR AAW LSKR N K A R I D D 600
Cdd:TIGR02746 473 LCE ML GG T Y IEFS pes NICL NPF TGNNVT - EI D DEIDQ I TALIAL MASP E G G L SDEQRST L EE A IL AAW KEYG N E A T I T D 551
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 601 V VAF LQ SEK D S E EY adspgvr S R LD D MIIL L DQ YT VN G L YG E YFN S d EPS L HDDA R M VVLEL GG LE S R QS L LVA V M FSL I 680
Cdd:TIGR02746 552 V QDA LQ QLE D D E ND ------- P R IK D LGKM L NP YT SH G V YG R YFN G - PNN L DFSN R F VVLEL EE LE D R PD L QAV V L FSL M 623
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 681 IY I ENR MY QS PR SLK K LNV IDE G W R LLD FK N EKVGT FIE K GYR T AR RHT GA Y ITITQ N I V DF D S pta S SA ARAA WG NS SY 760
Cdd:TIGR02746 624 VR I TGE MY LT PR KRR K ICI IDE A W S LLD GA N PQAAD FIE T GYR R AR KYG GA F ITITQ G I E DF Y S --- S PE ARAA YA NS DW 700
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 761 K A IL K QSA KEF AK YNQLY P DQ FS KL EK DM I NGFGS AK EQ w FS SFMLQVEANC S W HRLFVDP L SR AMY S SK GP D FE YMKAR 840
Cdd:TIGR02746 701 K I IL R QSA ESI AK LKAEN P FT FS PF EK RL I KSLRT AK GA - FS ELLIRSGEGS S V HRLFVDP F SR VLF S TD GP E FE EVEEL 779
810
....*....|....*..
gi 1048234965 841 R QE G VDIHD A VYG LA CH 857
Cdd:TIGR02746 780 R EQ G LSLEE A IEQ LA QK 796
VirB4
COG3451 Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ...
289-844
3.33e-107
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain]
Cd Length: 546
Bit Score: 341.16
E-value: 3.33e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 289 YAN LL N P E L SIS C P F VI T LTLMVE D QVKTQNEANL K FMDV E K K S K TSY A KYFPNVIKEMQEWGDIRQR L ATNQTS L VSYF 368
Cdd:COG3451 23 SPG LL D P L L QLP C E F IV T QSFTPL D KDEALKKLKR K RRRL E S K R K SEQ A LVDDDAESQAEDAEEALDE L QSGGER L GEVH 102
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 369 FNI T TY t AD NA E ASLATEQQ V LNSYRKG GF Q L IPARYHHLRN FL AMM P FKCGEG L FK elqaagvv KRAE T FQV A N L L P IV 448
Cdd:COG3451 103 LTL T VF - AD DL E ELEEAVRE V ESALQSA GF T L VRETLNQEEA FL SSL P GNFDYR L RR -------- RLLT T SNL A A L F P FH 173
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 449 ADSPLA P A G L - L AP T YRNQLA F I D LFYE gmn NT N F N MAVC G T SG A GK TG L IQP L IRSV L DS G GFAWV FD M G DG Y KS L CEN 527
Cdd:COG3451 174 SFELGD P W G I y L LN T RSGTPV F F D FHDG --- LD N G N TLIL G P SG S GK SF L LKL L LLQL L RY G ARIVI FD P G GS Y EI L VRA 250
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 528 M GG V Y L D --- G DSLKF NPF ANILDDAN fdls AERIRDQMSVMASPN G - N L DEVHEGLLLQ AVRA AWLSKRNKA R -- ID D V 601
Cdd:COG3451 251 L GG T Y I D lsp G SPTGL NPF DLEDTEEK ---- RDFLLELLELLLGRE G e P L TPEERAAIDR AVRA LYRRADPEE R tt LS D L 326
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 602 VAF L QSEKDSEEY A DS pgvrsrlddmiil L DQ YT VN G L YG EY F NSDEPSLHD DAR M VV LE L GG L ESRQS L LVA V MFS L II 681
Cdd:COG3451 327 YEL L KEQPEAKDL A AR ------------- L EP YT KG G S YG WL F DGPTNLDLS DAR F VV FD L TE L LDNPE L RPP V LLY L LH 393
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 682 Y I E NR MYQSPRSLKK L N VIDE G W R LLD fk N EKVGT F I E KGYR T A R RHT GA Y I TI TQ NIV DF D S pta S SA A R A AWG NS SY K 761
Cdd:COG3451 394 R I W NR LRKNNDGRPT L I VIDE A W L LLD -- N PAFAE F L E EWLK T L R KYN GA V I FA TQ SVE DF L S --- S PI A E A IIE NS AT K 468
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 762 AI L K Q SAKEFAK Y NQ L Y pd QF S KL E KDM I NGF G SA K EQ wfss F MLQVEANCSWH RL FVD P LSR A MY S S K GPDFEYMKAR R 841
Cdd:COG3451 469 IL L P Q PKADIED Y AE L L -- GL S ER E LEL I RSA G RG K RD ---- F LIKQGNGSVVF RL DLS P EEL A LL S T K PEEVAILDEL R 542
...
gi 1048234965 842 Q E G 844
Cdd:COG3451 543 A E H 545
TraC_F_IV
pfam11130 TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a ...
39-278
6.47e-67
TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a cytoplasmic, peripheral membrane protein and is one of the proteins encoded by the F transfer region of the conjugative plasmid that is required for the assembly of F pilin into the mature F pilus structure. F pili are filamentous appendages that help establish the physical contact between donor and recipient cells involved in the conjugation process.
Pssm-ID: 431669 [Multi-domain]
Cd Length: 232
Bit Score: 222.93
E-value: 6.47e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 39 P Q FS RI LPY KD YD SA TGLF I N NK - T VGF M FE AR PL P GAD K S IVA TLE H LL RSK LP R G V PV S F H L VS S KLV G NDI D Y g LR E 117
Cdd:pfam11130 1 P S FS DL LPY VA YD PE TGLF L N ED g S VGF V FE LS PL G GAD E S VRD TLE S LL SDD LP D G T PV Q F L L FA S PDI G PYL D R - LR D 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 118 F R w S G K Q ARKFN AI T -- R AYY L RAAE T QFP lpd NL D LPLT LR NY R VYI S CC VP R K KNST T Q I VE L ENQIKV L R ASL GG A Y 195
Cdd:pfam11130 80 Y R - L G E Q GGHLR AI A rp R GLF L DSGV T GSL --- SA D WRGQ LR RF R LVL S RK VP G K ADLP T P I EA L NELRDR L E ASL RS A G 155
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 196 IPT R I LD AAGMVELM R ELI NPDP HEMYRV P YKL DP YQ D LNY Q CV D DSFDMQ V T AG H L KIGRLGR dgkecv TR V TNYH L EC 275
Cdd:pfam11130 156 LAA R R LD PDDLIAWL R RWL NPDP SASWDP P ADY DP DK D IAE Q IL D SDPRLD V E AG R L YFDGEPH ------ RA V RVLS L RR 229
...
gi 1048234965 276 D PE 278
Cdd:pfam11130 230 F PE 232
DUF5934
pfam19357 Family of unknown function (DUF5934); This presumed domain found in type IV secretion system ...
291-447
4.79e-14
Family of unknown function (DUF5934); This presumed domain found in type IV secretion system proteins is functionally uncharacterized. This domain family is found in proteobacteria, and is approximately 170 amino acids in length. The family is found in association with pfam11130. There are two conserved sequence motifs: GWDL and QGEY.
Pssm-ID: 437189 [Multi-domain]
Cd Length: 172
Bit Score: 70.89
E-value: 4.79e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 291 NLL N PE L SIS CP FVIT L T L MVE DQ VKTQNE A NL KFM DVEKKSKTSY A KYF P NVIKEMQ EW GDIRQR L ATNQ t S LV SY F FN 370
Cdd:pfam19357 3 DMF N DK L RLP CP VATS L C L VYP DQ EAASSK A GY KFM RTTSLADSKS A RFL P QLKEQSA EW QHVQDE L RQGR - K LV RA F YS 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 371 I T TY ---- TA D naeasl A T E QQVLNS Y RKG G FQ LI PA RY HHLRNF LA M MP FKCGE GL FKE L QAAGVVKRAE T FQV AN LL P 446
Cdd:pfam19357 82 V T AF spkg KG D ------ A H E RTLKSV Y KAA G WD LI DE RY LQIMGL LA A MP LTLAD GL ASD L ERMKRFRTML T TTA AN IA P 155
.
gi 1048234965 447 I 447
Cdd:pfam19357 156 L 156
P-loop_TraG
pfam19044 TraG P-loop domain; This entry represents the P-loop domain found in the TraG conjugation ...
469-741
1.28e-12
TraG P-loop domain; This entry represents the P-loop domain found in the TraG conjugation protein.
Pssm-ID: 436917 [Multi-domain]
Cd Length: 413
Bit Score: 70.63
E-value: 1.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 469 FI D LFY E G M NN --- TN F N MAVC G T SG A GK TGLIQPLI RS VLDS G GFAWVF D M G DG YK S LCE NM GG V Y L --- DGDSLK FNP 542
Cdd:pfam19044 14 HV D ISD E P M KK gii TN R N KFIL G P SG S GK SFFTNHMV RS YYEQ G AHVVLV D V G HS YK G LCE LV GG Y Y F tys EENPIR FNP 93
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 543 F A n I L D DANF D ls A E RI rdqmsvmaspngnld E VHEG LLL qavr A A W LSKRNKARIDDV VA ---------- F L QSEK D -- 610
Cdd:pfam19044 94 F Y - I G D GDVL D -- T E KK --------------- E SIKT LLL ---- A L W KKDDESFTRSEY VA lsnaltlyye H L EKDP D if 151
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 611 ---------- SE EY A --- DSPG V RSR --- L D DMIIL L DQ Y TVN G LYGEYF N SD E -- PS L HD da R MV V L EL GGLESRQS L L 672
Cdd:pfam19044 152 pcfntfyefl RD EY L kvl EEDK V KEK dfd I D NFLYV L RP Y YKG G EFDYLL N AT E nl DL L NE -- R FI V F EL DNIKDHPI L F 229
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1048234965 673 VA V mf SL II --- Y I e NR M yqsp R S LK --- K LNV I D E G W RLL df KN E KVGTF I EKGYR T A R RHT G AY I TI TQ NIV D 741
Cdd:pfam19044 230 PV V -- TI II mev F I - SK M ---- R K LK gir K MIL I E E A W KAI -- AK E GMAEY I KYLFK T V R KFF G EA I VV TQ EVD D 295
VirD4
COG3505 Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ...
483-774
3.65e-10
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain]
Cd Length: 402
Bit Score: 63.08
E-value: 3.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 483 NMA V C G TS G A GKT - GL IQ P LIRS v L DS G GFAW V F D M - GD GYK --- SLCENM G G -- VYL D ---- GD S LKF NP FAN I L D D A N 551
Cdd:COG3505 1 HVL V I G PT G S GKT v GL VI P NLTQ - L AR G ESVV V T D P k GD LAE lta GFRRRA G Y dv YVF D pfdp ER S HRW NP LDE I R D P A D 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 552 FDLS AE RIRDQMSVMASPNGNLD E VHEG LL LQAVR A AWLS - K R N kar ID DV VAF L QSEKDS ----- E EYAD S -- P G V RSR 623
Cdd:COG3505 80 AQEL AE ALIPALGGGGGGDPFWR E AARA LL AALIL A LAEE g R R T --- LA DV YRL L SEPEEE lrell E ALPE S ph P P V ADT 156
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 624 L DDMI --------- I L ------ L DQYT v NGLYGEYFNSDEPS L H D --- DARMVV L E L GGLE - S RQSL L VAVMF S LI I yie 684
Cdd:COG3505 157 L AAFL naaektrss V L stlasa L ELLS - DPEVAALTSGSDFD L R D lir EKGTLY L V L PPDD l S TLAP L LRLLL S QL I --- 232
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 685 NRMYQSPRSLKK L N ----- VI DE gwrlld F K N ek V G TF -- I E KGYR T A R RHTGAYIT I T Q NIVDFDSPTASSA A RAAW GN 757
Cdd:COG3505 233 RALLRRAERSGR L P rpvll LL DE ------ F A N -- L G RL ps L E TLLA T G R GYGIRLVL I L Q SLAQLEAIYGEEG A ETIL GN 304
330
....*....|....*..
gi 1048234965 758 SSY K AI L KQSAK E F A K Y 774
Cdd:COG3505 305 CGT K IF L GVNDP E T A E Y 321
PRK13873
PRK13873 conjugal transfer ATPase TrbE; Provisional
484-708
2.55e-06
conjugal transfer ATPase TrbE; Provisional
Pssm-ID: 237536 [Multi-domain]
Cd Length: 811
Bit Score: 51.45
E-value: 2.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 484 MA V C G TS GAGK T --- G L IQPLI R SVLDSGG FA wv FD M G DGYKSLCEN MGG VYL D ----- GD S LKFN P F A N I L D D A NFDLS 555
Cdd:PRK13873 444 TL V V G PT GAGK S vll A L MALQF R RYPGAQV FA -- FD F G GSIRAATLA MGG DWH D lggga DG S VALQ P L A R I D D E A ERAWA 521
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 556 AE R I RDQMS vmaspngnldev H EG LLLQ - A V RAA - W LSKRNK A ------ R - IDDVVAF LQS E kdseeyadsp GVRSR L D d 626
Cdd:PRK13873 522 AE W I AGILA ------------ R EG VAVT p E V KEH i W SALTSL A sapvee R t LTGLSVL LQS N ---------- ALKQA L A - 578
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1048234965 627 miilld Q Y TVN G LY G EYFNS D EPS L h DD A RMVVL E LG GL ESRQSLLV AV MFS L IIY IE N R MYQS P rslk K L NVI DE G W RL 706
Cdd:PRK13873 579 ------ P Y CLG G PH G RLLDA D AER L - GS A DVQAF E ME GL MGTKAAAP AV LSY L FHR IE D R FDGR P ---- T L LIL DE A W LF 647
..
gi 1048234965 707 LD 708
Cdd:PRK13873 648 LD 649
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
