NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1054041424|ref|WP_066137215|]
View 

AAA family ATPase [Haematospirillum jordaniae]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ParA_partition super family cl49513
ParA family partition ATPase;
9-206 2.44e-48

ParA family partition ATPase;


The actual alignment was detected with superfamily member NF041546:

Pssm-ID: 469431 [Multi-domain]  Cd Length: 202  Bit Score: 157.33  E-value: 2.44e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   9 KGGSGKTTVATNLAIIRAAAGKDVLLVDADDQETSTDFTALRNESlekgAGYTSIKLTGATVRTEIQRLANKYDDIIIDT 88
Cdd:NF041546    8 KGGVGKTTLATHLAAALARRGYRVLLVDADPQGSALDWAAAREDE----RPFPVVGLARPTLHRELPSLARDYDFVVIDG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  89 GGRDTTSQRAALTVADTVLVPFVPRSFDVWTLERIGQLVEEMRAANPTLVAYTFLNRADPRGQDNDAAAEVLQETGALIF 168
Cdd:NF041546   84 PPRAEDLARSAIKAADLVLIPVQPSPYDLWASADTVDLIKEAREYTPGLKAAFVLNRAIARTALGREVAEALAEYGLPVL 163

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1054041424 169 iDTPLGGRKAYSNAAAHGLSVVELKPaDQKAVEEIMKL 206
Cdd:NF041546  164 -KTRIGQRVAFAESAAEGLTVFEAEP-DGKAAREIRAL 199
 
Name Accession Description Interval E-value
ParA_partition NF041546
ParA family partition ATPase;
9-206 2.44e-48

ParA family partition ATPase;


Pssm-ID: 469431 [Multi-domain]  Cd Length: 202  Bit Score: 157.33  E-value: 2.44e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   9 KGGSGKTTVATNLAIIRAAAGKDVLLVDADDQETSTDFTALRNESlekgAGYTSIKLTGATVRTEIQRLANKYDDIIIDT 88
Cdd:NF041546    8 KGGVGKTTLATHLAAALARRGYRVLLVDADPQGSALDWAAAREDE----RPFPVVGLARPTLHRELPSLARDYDFVVIDG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  89 GGRDTTSQRAALTVADTVLVPFVPRSFDVWTLERIGQLVEEMRAANPTLVAYTFLNRADPRGQDNDAAAEVLQETGALIF 168
Cdd:NF041546   84 PPRAEDLARSAIKAADLVLIPVQPSPYDLWASADTVDLIKEAREYTPGLKAAFVLNRAIARTALGREVAEALAEYGLPVL 163

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1054041424 169 iDTPLGGRKAYSNAAAHGLSVVELKPaDQKAVEEIMKL 206
Cdd:NF041546  164 -KTRIGQRVAFAESAAEGLTVFEAEP-DGKAAREIRAL 199
PHA02518 PHA02518
ParA-like protein; Provisional
 1-206 3.11e-45

ParA-like protein; Provisional


Pssm-ID: 222854 [Multi-domain]  Cd Length: 211  Bit Score: 150.00  E-value: 3.11e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   1 MIVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDADDQETSTDFTALRNEslekGAGYTSIKLTGATVRTEIQRLANK 80
Cdd:PHA02518    1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREE----GEPLIPVVRMGKSIRADLPKVASG 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  81 YDDIIIDTGGRDTTSQRAALTVADTVLVPFVPRSFDVWTLERIGQLVEEMRAANPTLVAYTFLNRADPRGQDNDAAAEVL 160
Cdd:PHA02518   77 YDYVVVDGAPQDSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKNTQLYREARKA 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1054041424 161 QETGALIFIDTPLGGRKAYSNAAAHGLSVVELkPADQKAVEEIMKL 206
Cdd:PHA02518  157 LAGYGLPILRNGTTQRVAYADAAEAGGSVLEL-PEDDKAAEEIIQL 201
ParAB_family cd02042
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ...
 1-161 5.43e-32

partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.


Pssm-ID: 349760 [Multi-domain]  Cd Length: 130  Bit Score: 113.02  E-value: 5.43e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   1 MIVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDADDQETSTDFTalrneslekgagytsikltgatvrteiqrlank 80
Cdd:cd02042     1 KVIAVANQKGGVGKTTLAVNLAAALALRGKRVLLIDLDPQGSLTSWL--------------------------------- 47

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  81 YDDIIIDTGGRDTTSQRAALTVADTVLVPFVPRSFDVWTLERIGQLVEEMRA--ANPTLVAYTFLNRADPRGQDNDAAAE 158
Cdd:cd02042    48 YDYILIDTPPSLGLLTRNALAAADLVLIPVQPSPFDLDGLAKLLDTLEELKKqlNPPLLILGILLTRVDPRTKLAREVLE 127


                  ...
gi 1054041424 159 VLQ 161
Cdd:cd02042   128 ELK 130
ParA COG1192
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ...
 1-208 2.69e-31

ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440805 [Multi-domain]  Cd Length: 253  Bit Score: 114.96  E-value: 2.69e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   1 MIVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDADDQETSTDFTALRNESLEKGAGY-------------------- 60
Cdd:COG1192     2 KVIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQGNLTSGLGLDPDDLDPTLYDlllddapledaivpteipgl 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  61 ----TSIKLTGATV------------RTEIQRLANKYDDIIIDTGGRDTTSQRAALTVADTVLVPFVPRSFDVWTLERIG 124
Cdd:COG1192    82 dlipANIDLAGAEIelvsrpgrelrlKRALAPLADDYDYILIDCPPSLGLLTLNALAAADSVLIPVQPEYLSLEGLAQLL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424 125 QLVEEMRAA-NPTL-VAYTFLNRADPRGQDNDAAAEVLQETGALIFIDTPLGGRKAYSNAAAHGLSVVELKPADqKAVEE 202
Cdd:COG1192   162 ETIEEVREDlNPKLeILGILLTMVDPRTRLSREVLEELREEFGDKVLDTVIPRSVALAEAPSAGKPVFEYDPKS-KGAKA 240


                  ....*.
gi 1054041424 203 IMKLHR 208
Cdd:COG1192   241 YRALAE 246
CbiA pfam01656
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ...
 2-189 1.15e-16

CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.


Pssm-ID: 426369 [Multi-domain]  Cd Length: 228  Bit Score: 75.85  E-value: 1.15e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   2 IVVVGGiKGGSGKTTVATNLAIIRAAAGKDVLLVDADDQETSTDFTALRNE----------------------------- 52
Cdd:pfam01656   1 IAIAGT-KGGVGKTTLAANLARALARRGLRVLLIDLDPQSNNSSVEGLEGDiapalqalaeglkgrvnldpillkeksde 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  53 ----------SLEKGAGYTSIKLTGATVRTEIQRLANKYDDIIIDT-GGRDTTSqRAALTVADTVLVPFVPRSFDVWTLE 121
Cdd:pfam01656  80 ggldlipgniDLEKFEKELLGPRKEERLREALEALKEDYDYVIIDGaPGLGELL-RNALIAADYVIIPLEPEVILVEDAK 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1054041424 122 RIGQLVEEMRAANPTL---VAYTFLNRADPRGQDN---DAAAEVLQETGALIFIdtPLggRKAYSNAAAHGLSV 189
Cdd:pfam01656 159 RLGGVIAALVGGYALLglkIIGVVLNKVDGDNHGKllkEALEELLRGLPVLGVI--PR--DEAVAEAPARGLPV 228
cellulose_yhjQ TIGR03371
cellulose synthase operon protein YhjQ; Members of this family are the YhjQ protein, found ...
 2-206 1.79e-08

cellulose synthase operon protein YhjQ; Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 274549 [Multi-domain]  Cd Length: 246  Bit Score: 53.12  E-value: 1.79e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   2 IVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDADDQ------------------ETSTDFTALRNESLEKGAG---- 59
Cdd:TIGR03371   3 VIAIVSVRGGVGKTTLTANLASALKLLGEPVLAIDLDPQnllrlhfgmdwsvrdgwaRALLNGADWAAAAYRSPDGvlfl 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  60 -YTSIKLTGA---------TVRTEIQRLANKYDDI-IIDTGGRDTTSQRAALTVADTVLVPFVPrsfDVWTLERIGQLVE 128
Cdd:TIGR03371  83 pYGDLSADEReayqahdagWLARLLQQLDLAARDWvLIDLPRGPSPITRQALAAADLVLVVVNA---DAACYATLHQLAL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424 129 EMRAANPTLVAYTFL-NRADPRGQDNDAAAEVLQETgalifidtpLGGR---------KAYSNAAAHGLSVVELKPADQk 198
Cdd:TIGR03371 160 ALFAGSGPRDGPRFLiNQFDPARQLSRDVRAVLRQT---------LGSRllpfvihrdEAVSEALARGTPVLNYAPHSQ- 229


                  ....*...
gi 1054041424 199 AVEEIMKL 206
Cdd:TIGR03371 230 AAHDIRTL 237
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 2-86 3.58e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 36.58  E-value: 3.58e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424    2 IVVVGGIkgGSGKTTVATNLAIIRAAAGKDVLLVDADDQETSTDFTALRNESLEKGAGYTSIKltgaTVRTEIQRLANKY 81
Cdd:smart00382   5 ILIVGPP--GSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGEL----RLRLALALARKLK 78


                   ....*
gi 1054041424   82 DDIII 86
Cdd:smart00382  79 PDVLI 83
 
Name Accession Description Interval E-value
ParA_partition NF041546
ParA family partition ATPase;
9-206 2.44e-48

ParA family partition ATPase;


Pssm-ID: 469431 [Multi-domain]  Cd Length: 202  Bit Score: 157.33  E-value: 2.44e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   9 KGGSGKTTVATNLAIIRAAAGKDVLLVDADDQETSTDFTALRNESlekgAGYTSIKLTGATVRTEIQRLANKYDDIIIDT 88
Cdd:NF041546    8 KGGVGKTTLATHLAAALARRGYRVLLVDADPQGSALDWAAAREDE----RPFPVVGLARPTLHRELPSLARDYDFVVIDG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  89 GGRDTTSQRAALTVADTVLVPFVPRSFDVWTLERIGQLVEEMRAANPTLVAYTFLNRADPRGQDNDAAAEVLQETGALIF 168
Cdd:NF041546   84 PPRAEDLARSAIKAADLVLIPVQPSPYDLWASADTVDLIKEAREYTPGLKAAFVLNRAIARTALGREVAEALAEYGLPVL 163

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1054041424 169 iDTPLGGRKAYSNAAAHGLSVVELKPaDQKAVEEIMKL 206
Cdd:NF041546  164 -KTRIGQRVAFAESAAEGLTVFEAEP-DGKAAREIRAL 199
PHA02518 PHA02518
ParA-like protein; Provisional
 1-206 3.11e-45

ParA-like protein; Provisional


Pssm-ID: 222854 [Multi-domain]  Cd Length: 211  Bit Score: 150.00  E-value: 3.11e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   1 MIVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDADDQETSTDFTALRNEslekGAGYTSIKLTGATVRTEIQRLANK 80
Cdd:PHA02518    1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREE----GEPLIPVVRMGKSIRADLPKVASG 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  81 YDDIIIDTGGRDTTSQRAALTVADTVLVPFVPRSFDVWTLERIGQLVEEMRAANPTLVAYTFLNRADPRGQDNDAAAEVL 160
Cdd:PHA02518   77 YDYVVVDGAPQDSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKNTQLYREARKA 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1054041424 161 QETGALIFIDTPLGGRKAYSNAAAHGLSVVELkPADQKAVEEIMKL 206
Cdd:PHA02518  157 LAGYGLPILRNGTTQRVAYADAAEAGGSVLEL-PEDDKAAEEIIQL 201
ParAB_family cd02042
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ...
 1-161 5.43e-32

partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.


Pssm-ID: 349760 [Multi-domain]  Cd Length: 130  Bit Score: 113.02  E-value: 5.43e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   1 MIVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDADDQETSTDFTalrneslekgagytsikltgatvrteiqrlank 80
Cdd:cd02042     1 KVIAVANQKGGVGKTTLAVNLAAALALRGKRVLLIDLDPQGSLTSWL--------------------------------- 47

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  81 YDDIIIDTGGRDTTSQRAALTVADTVLVPFVPRSFDVWTLERIGQLVEEMRA--ANPTLVAYTFLNRADPRGQDNDAAAE 158
Cdd:cd02042    48 YDYILIDTPPSLGLLTRNALAAADLVLIPVQPSPFDLDGLAKLLDTLEELKKqlNPPLLILGILLTRVDPRTKLAREVLE 127


                  ...
gi 1054041424 159 VLQ 161
Cdd:cd02042   128 ELK 130
ParA COG1192
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ...
 1-208 2.69e-31

ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440805 [Multi-domain]  Cd Length: 253  Bit Score: 114.96  E-value: 2.69e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   1 MIVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDADDQETSTDFTALRNESLEKGAGY-------------------- 60
Cdd:COG1192     2 KVIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQGNLTSGLGLDPDDLDPTLYDlllddapledaivpteipgl 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  61 ----TSIKLTGATV------------RTEIQRLANKYDDIIIDTGGRDTTSQRAALTVADTVLVPFVPRSFDVWTLERIG 124
Cdd:COG1192    82 dlipANIDLAGAEIelvsrpgrelrlKRALAPLADDYDYILIDCPPSLGLLTLNALAAADSVLIPVQPEYLSLEGLAQLL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424 125 QLVEEMRAA-NPTL-VAYTFLNRADPRGQDNDAAAEVLQETGALIFIDTPLGGRKAYSNAAAHGLSVVELKPADqKAVEE 202
Cdd:COG1192   162 ETIEEVREDlNPKLeILGILLTMVDPRTRLSREVLEELREEFGDKVLDTVIPRSVALAEAPSAGKPVFEYDPKS-KGAKA 240


                  ....*.
gi 1054041424 203 IMKLHR 208
Cdd:COG1192   241 YRALAE 246
CbiA pfam01656
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ...
 2-189 1.15e-16

CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.


Pssm-ID: 426369 [Multi-domain]  Cd Length: 228  Bit Score: 75.85  E-value: 1.15e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   2 IVVVGGiKGGSGKTTVATNLAIIRAAAGKDVLLVDADDQETSTDFTALRNE----------------------------- 52
Cdd:pfam01656   1 IAIAGT-KGGVGKTTLAANLARALARRGLRVLLIDLDPQSNNSSVEGLEGDiapalqalaeglkgrvnldpillkeksde 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  53 ----------SLEKGAGYTSIKLTGATVRTEIQRLANKYDDIIIDT-GGRDTTSqRAALTVADTVLVPFVPRSFDVWTLE 121
Cdd:pfam01656  80 ggldlipgniDLEKFEKELLGPRKEERLREALEALKEDYDYVIIDGaPGLGELL-RNALIAADYVIIPLEPEVILVEDAK 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1054041424 122 RIGQLVEEMRAANPTL---VAYTFLNRADPRGQDN---DAAAEVLQETGALIFIdtPLggRKAYSNAAAHGLSV 189
Cdd:pfam01656 159 RLGGVIAALVGGYALLglkIIGVVLNKVDGDNHGKllkEALEELLRGLPVLGVI--PR--DEAVAEAPARGLPV 228
CpaE COG4963
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular ...
 1-206 4.49e-12

Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443989 [Multi-domain]  Cd Length: 358  Bit Score: 64.37  E-value: 4.49e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   1 MIVVVGGiKGGSGKTTVATNLAI-IRAAAGKDVLLVDAD----------DQETSTDFT-ALRN----------------- 51
Cdd:COG4963   104 VIAVVGA-KGGVGATTLAVNLAWaLARESGRRVLLVDLDlqfgdvalylDLEPRRGLAdALRNpdrldetlldraltrhs 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  52 ---------ESLEKGAGytsikLTGATVRTEIQRLANKYDDIIIDTGGRDTTSQRAALTVADTVLVPFVPrsfDVWTLER 122
Cdd:COG4963   183 sglsvlaapADLERAEE-----VSPEAVERLLDLLRRHFDYVVVDLPRGLNPWTLAALEAADEVVLVTEP---DLPSLRN 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424 123 IGQLVEEMRA-----ANPTLVaytfLNRADPRGQDNdaAAEVLQETGALIFIDTPLGGrKAYSNAAAHGLSVVELKPADq 197
Cdd:COG4963   255 AKRLLDLLRElglpdDKVRLV----LNRVPKRGEIS--AKDIEEALGLPVAAVLPNDP-KAVAEAANQGRPLAEVAPKS- 326


                  ....*....
gi 1054041424 198 KAVEEIMKL 206
Cdd:COG4963   327 PLAKAIRKL 335
AAA_31 pfam13614
AAA domain; This family includes a wide variety of AAA domains including some that have lost ...
 2-126 5.85e-11

AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.


Pssm-ID: 433350 [Multi-domain]  Cd Length: 177  Bit Score: 59.13  E-value: 5.85e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   2 IVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDADDQETST----------DFT---ALRNESLEKGAGY-------- 60
Cdd:pfam13614   3 VIAIANQKGGVGKTTTSVNLAAALAKKGKKVLLIDLDPQGNATsglgidknnvEKTiyeLLIGECNIEEAIIktvienld 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  61 ---TSIKLTGATVRTE------------IQRLANKYDDIIIDTG---GRDTTSqraALTVADTVLVPFVPrsfDVWTLER 122
Cdd:pfam13614  83 lipSNIDLAGAEIELIgienrenilkeaLEPVKDNYDYIIIDCPpslGLLTIN---ALTASDSVLIPVQC---EYYALEG 156


                  ....
gi 1054041424 123 IGQL 126
Cdd:pfam13614 157 LSQL 160
MipZ pfam09140
ATPase MipZ; MipZ is an ATPase that forms a complex with the chromosome partitioning protein ...
 2-117 1.01e-10

ATPase MipZ; MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.


Pssm-ID: 401181 [Multi-domain]  Cd Length: 262  Bit Score: 59.78  E-value: 1.01e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   2 IVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDAD-DQETSTDFTALRNESLEKgagyTSIKLTGATVR--------- 71
Cdd:pfam09140   2 VIVVGNEKGGSGKSTTAVHVAVALLYKGARVAAIDLDlRQRTFHRYFENRSATADR----TGLSLPTPEHLnlpdndvae 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1054041424  72 ------TEIQRL-------ANKYDDIIIDTGGRDTTSQRAALTVADTVLVP----FVprSFDV 117
Cdd:pfam09140  78 vpdgenIDDARLeeafadlEARCDFIVIDTPGSDSPLSRLAHSRADTLVTPlndsFV--DFDL 138
CpaE-like cd03111
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE ...
 2-203 4.88e-10

pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.


Pssm-ID: 349765 [Multi-domain]  Cd Length: 235  Bit Score: 57.67  E-value: 4.88e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   2 IVVVGGIKGGSGKTTVATNLAIIRAA-AGKDVLLVDADDQ--------ETSTDFT---ALRN-----ESLEKGAGY---T 61
Cdd:cd03111     2 VVAVVGAKGGVGASTLAVNLAQELAQrAKDKVLLIDLDLPfgdlglylNLRPDYDladVIQNldrldRTLLDSAVTrhsS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  62 SIKLTGATVRTE-------------IQRLANKYDDIIIDTGGRDTTSQRAALTVADTVLVPFVPrsfDVWTLERIGQLVE 128
Cdd:cd03111    82 GLSLLPAPQELEdlealgaeqvdklLQVLRAFYDHIIVDLGHFLDEVTLAVLEAADEILLVTQQ---DLPSLRNARRLLD 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424 129 EMRAANPT-----LVaytfLNRADPRGQ-DNDAAAEVL-QETGALIFIDtplggRKAYSNAAAHGLSVVELKPADQ--KA 199
Cdd:cd03111   159 SLRELEGSsdrlrLV----LNRYDKKSEiSPKDIEEALgLEVFATLPND-----YKAVSESANTGRPLVEVAPRSAlvRA 229


                  ....
gi 1054041424 200 VEEI 203
Cdd:cd03111   230 LQDL 233
cellulose_yhjQ TIGR03371
cellulose synthase operon protein YhjQ; Members of this family are the YhjQ protein, found ...
 2-206 1.79e-08

cellulose synthase operon protein YhjQ; Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 274549 [Multi-domain]  Cd Length: 246  Bit Score: 53.12  E-value: 1.79e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   2 IVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDADDQ------------------ETSTDFTALRNESLEKGAG---- 59
Cdd:TIGR03371   3 VIAIVSVRGGVGKTTLTANLASALKLLGEPVLAIDLDPQnllrlhfgmdwsvrdgwaRALLNGADWAAAAYRSPDGvlfl 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  60 -YTSIKLTGA---------TVRTEIQRLANKYDDI-IIDTGGRDTTSQRAALTVADTVLVPFVPrsfDVWTLERIGQLVE 128
Cdd:TIGR03371  83 pYGDLSADEReayqahdagWLARLLQQLDLAARDWvLIDLPRGPSPITRQALAAADLVLVVVNA---DAACYATLHQLAL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424 129 EMRAANPTLVAYTFL-NRADPRGQDNDAAAEVLQETgalifidtpLGGR---------KAYSNAAAHGLSVVELKPADQk 198
Cdd:TIGR03371 160 ALFAGSGPRDGPRFLiNQFDPARQLSRDVRAVLRQT---------LGSRllpfvihrdEAVSEALARGTPVLNYAPHSQ- 229


                  ....*...
gi 1054041424 199 AVEEIMKL 206
Cdd:TIGR03371 230 AAHDIRTL 237
Mrp COG0489
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ...
 2-38 2.25e-08

Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440255 [Multi-domain]  Cd Length: 289  Bit Score: 53.27  E-value: 2.25e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1054041424   2 IVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDAD 38
Cdd:COG0489    94 VIAVTSGKGGEGKSTVAANLALALAQSGKRVLLIDAD 130
SIMIBI cd01983
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ...
 1-39 5.22e-08

SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.


Pssm-ID: 349751 [Multi-domain]  Cd Length: 107  Bit Score: 49.35  E-value: 5.22e-08
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1054041424   1 MIVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDADD 39
Cdd:cd01983     1 RVIAVTGGKGGVGKTTLAAALAVALAAKGYKVLLIDLDD 39
Mrp_NBP35 cd02037
Mrp/NBP35 ATP-binding protein family; Mrp/NBP35 ATP-binding family protein are typically ...
 2-38 1.21e-07

Mrp/NBP35 ATP-binding protein family; Mrp/NBP35 ATP-binding family protein are typically iron-sulfur (FeS) cluster scaffolds that function to assemble nascent FeS clusters for transfer to FeS-requiring enzymes. Members include the eukaryotic nucleotide-binding protein 1 (NUBP1) which is a component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery and the archael [NiFe] hydrogenase maturation protein HypB which is required for nickel insertion into [NiFe] hydrogenase.


Pssm-ID: 349757 [Multi-domain]  Cd Length: 213  Bit Score: 50.58  E-value: 1.21e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1054041424   2 IVVVGGiKGGSGKTTVATNLAIIRAAAGKDVLLVDAD 38
Cdd:cd02037     3 IAVLSG-KGGVGKSTVAVNLALALAKKGYKVGLLDAD 38
CooC COG3640
CO dehydrogenase nickel-insertion accessory protein CooC1 [Posttranslational modification, ...
 1-38 1.78e-07

CO dehydrogenase nickel-insertion accessory protein CooC1 [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442857 [Multi-domain]  Cd Length: 249  Bit Score: 50.17  E-value: 1.78e-07
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1054041424   1 MIVVVGGiKGGSGKTTVATNLAIIRAAAGKDVLLVDAD 38
Cdd:COG3640     1 MKIAVAG-KGGVGKTTLSALLARYLAEKGKPVLAVDAD 37
MinD cd02036
septum site-determining protein MinD; Septum site-determining protein MinD is part of the ...
 2-149 1.79e-07

septum site-determining protein MinD; Septum site-determining protein MinD is part of the operon MinCDE that determines the site of the formation of a septum at mid-cell, an important part of bacterial cell division. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein.


Pssm-ID: 349756 [Multi-domain]  Cd Length: 236  Bit Score: 50.28  E-value: 1.79e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   2 IVVVGGiKGGSGKTTVATNLAIIRAAAGKDVLLVDAD----------DQETSTDFTALR--------NESLEKGAGYTSI 63
Cdd:cd02036     3 IVITSG-KGGVGKTTTTANLGVALAKLGKKVLLIDADiglrnldlilGLENRIVYTLVDvlegecrlEQALIKDKRWENL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  64 KLTGATVRTE------------IQRLANKYDDIIIDT-GGRDTTSqRAALTVADTVLVPFVPRSFDVWTLERIGQLVEEM 130
Cdd:cd02036    82 YLLPASQTRDkdaltpekleelVKELKDSFDFILIDSpAGIESGF-INAIAPADEAIIVTNPEISSVRDADRVIGLLESK 160

                         170
                  ....*....|....*....
gi 1054041424 131 RAANPTLVaytfLNRADPR 149
Cdd:cd02036   161 GIVNIGLI----VNRYRPE 175
FlhG COG0455
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell ...
 16-206 1.99e-07

MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440223 [Multi-domain]  Cd Length: 230  Bit Score: 49.89  E-value: 1.99e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  16 TVATNLAIIRAAAGKDVLLVDAD----------DQETSTDFTAL--RNESLE----KGAGYTSIkLTGAT---------- 69
Cdd:COG0455     1 TVAVNLAAALARLGKRVLLVDADlglanldvllGLEPKATLADVlaGEADLEdaivQGPGGLDV-LPGGSgpaelaeldp 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  70 ---VRTEIQRLANKYDDIIIDTG---GRDTTSqraALTVADTVLVPFVPrsfDVWTLERIGQLVEEMRAANPTLVAYTFL 143
Cdd:COG0455    80 eerLIRVLEELERFYDVVLVDTGagiSDSVLL---FLAAADEVVVVTTP---EPTSITDAYALLKLLRRRLGVRRAGVVV 153

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1054041424 144 NRADPRGQDNDAAAEVLQETGALIFIDTPLGGR----KAYSNAAAHGLSVVELKPaDQKAVEEIMKL 206
Cdd:COG0455   154 NRVRSEAEARDVFERLEQVAERFLGVRLRVLGVipedPAVREAVRRGRPLVLAAP-DSPAARAIREL 219
FlhG-like cd02038
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ...
 2-38 5.21e-07

MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.


Pssm-ID: 349758 [Multi-domain]  Cd Length: 230  Bit Score: 48.72  E-value: 5.21e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1054041424   2 IVVVGGiKGGSGKTTVATNLAIIRAAAGKDVLLVDAD 38
Cdd:cd02038     3 IAVTSG-KGGVGKTNVSANLALALSKLGKRVLLLDAD 38
ParA pfam10609
NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid ...
 2-38 1.60e-06

NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.


Pssm-ID: 431392 [Multi-domain]  Cd Length: 246  Bit Score: 47.45  E-value: 1.60e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1054041424   2 IVVVGGiKGGSGKTTVATNLAIIRAAAGKDVLLVDAD 38
Cdd:pfam10609   6 IAVASG-KGGVGKSTVAVNLALALARLGYKVGLLDAD 41
BY-kinase cd05387
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ...
 11-38 6.95e-06

bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.


Pssm-ID: 349772 [Multi-domain]  Cd Length: 190  Bit Score: 45.25  E-value: 6.95e-06
                          10        20
                  ....*....|....*....|....*...
gi 1054041424  11 GSGKTTVATNLAIIRAAAGKDVLLVDAD 38
Cdd:cd05387    30 GEGKSTVAANLAVALAQSGKRVLLIDAD 57
minD_arch TIGR01969
cell division ATPase MinD, archaeal; This model represents the archaeal branch of the MinD ...
 1-38 1.39e-05

cell division ATPase MinD, archaeal; This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.


Pssm-ID: 131024 [Multi-domain]  Cd Length: 251  Bit Score: 44.72  E-value: 1.39e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1054041424   1 MIVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDAD 38
Cdd:TIGR01969   1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDAD 38
ArsA cd02035
Arsenical pump-driving ATPase ArsA; ArsA ATPase functions as an efflux pump located on the ...
 2-45 1.64e-05

Arsenical pump-driving ATPase ArsA; ArsA ATPase functions as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes, respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.


Pssm-ID: 349755 [Multi-domain]  Cd Length: 250  Bit Score: 44.42  E-value: 1.64e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1054041424   2 IVVVGGiKGGSGKTTVATNLAIIRAAAGKDVLLVdaddqetSTD 45
Cdd:cd02035     2 IIFFGG-KGGVGKTTIAAATAVRLAEQGKRVLLV-------STD 37
MinD COG2894
Septum site-determining ATPase MinD [Cell cycle control, cell division, chromosome ...
 2-38 2.75e-05

Septum site-determining ATPase MinD [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442139 [Multi-domain]  Cd Length: 258  Bit Score: 43.89  E-value: 2.75e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1054041424   2 IVVVGGiKGGSGKTTVATNLAIIRAAAGKDVLLVDAD 38
Cdd:COG2894     5 IVVTSG-KGGVGKTTTTANLGTALALLGKKVVLIDAD 40
eps_fam TIGR01007
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ...
 2-108 3.29e-05

capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273392 [Multi-domain]  Cd Length: 204  Bit Score: 43.19  E-value: 3.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   2 IVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDAD-----------DQETSTDFTAL--RNESLEKGAGYTSIK---- 64
Cdd:TIGR01007  19 VLLITSVKPGEGKSTTSANIAIAFAQAGYKTLLIDGDmrnsvmsgtfkSQNKITGLTNFlsGTTDLSDAICDTNIEnldv 98

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1054041424  65 LTGATV-------------RTEIQRLANKYDDIIIDTG--GRDTTSQRAALTVADTVLV 108
Cdd:TIGR01007  99 ITAGPVppnptellqssnfKTLIETLRKRFDYIIIDTPpiGTVTDAAIIARACDASILV 157
ArsA COG0003
Anion-transporting ATPase, ArsA/GET3 family [Inorganic ion transport and metabolism];
2-45 7.02e-05

Anion-transporting ATPase, ArsA/GET3 family [Inorganic ion transport and metabolism];


Pssm-ID: 439774  Cd Length: 299  Bit Score: 42.88  E-value: 7.02e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1054041424   2 IVVVGGiKGGSGKTTVATNLAIIRAAAGKDVLLVdaddqetSTD 45
Cdd:COG0003     5 IIFFTG-KGGVGKTTVAAATALALAERGKRTLLV-------STD 40
NifH-like cd02117
NifH family; This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) ...
 2-44 1.17e-04

NifH family; This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase, and the BchX subunit of the Chlorophyllide reductase. Members of this family use energy from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for substrate reduction


Pssm-ID: 349761  Cd Length: 266  Bit Score: 41.97  E-value: 1.17e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1054041424   2 IVVVGgiKGGSGKTTVATNLAIIRAAAGKDVLLVDADDQETST 44
Cdd:cd02117     3 IVVYG--KGGIGKSTTASNLSAALAEGGKKVLHVGCDPKHDST 43
minD_bact TIGR01968
septum site-determining protein MinD; This model describes the bacterial and chloroplast form ...
 2-51 1.21e-04

septum site-determining protein MinD; This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. [Cellular processes, Cell division]


Pssm-ID: 131023 [Multi-domain]  Cd Length: 261  Bit Score: 41.94  E-value: 1.21e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1054041424   2 IVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDADdqetstdfTALRN 51
Cdd:TIGR01968   3 VIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDAD--------IGLRN 44
SIMIBI_bact_arch cd03110
bacterial and archaeal subfamily of SIMIBI; Uncharacterized bacterial and archaeal subfamily ...
 2-38 1.25e-04

bacterial and archaeal subfamily of SIMIBI; Uncharacterized bacterial and archaeal subfamily of SIMIBI superfamily. Proteins in this superfamily contain an ATP-binding domain and use energy from hydrolysis of ATP to transfer electron or ion. The specific function of this family is unknown.


Pssm-ID: 349764 [Multi-domain]  Cd Length: 246  Bit Score: 41.99  E-value: 1.25e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1054041424   2 IVVVGGiKGGSGKTTVATNLAIIRaaagKDVLLVDAD 38
Cdd:cd03110     2 IAVLSG-KGGTGKTTITANLAVLL----YNVILVDCD 33
CooC1 cd02034
accessory protein CooC1; The accessory protein CooC1, a nickel-binding ATPase, participates in ...
 1-39 1.42e-04

accessory protein CooC1; The accessory protein CooC1, a nickel-binding ATPase, participates in the incorporation of nickel into the complex active site ([Ni-4Fe-4S]) cluster of Ni,Fe-dependent carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.


Pssm-ID: 349754 [Multi-domain]  Cd Length: 249  Bit Score: 41.53  E-value: 1.42e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1054041424   1 MIVVVGGiKGGSGKTTVATNLAIIRAAAGKDVLLVDADD 39
Cdd:cd02034     1 MKIAVAG-KGGVGKTTIAALLIRYLAKKGGKVLAVDADP 38
PRK11670 PRK11670
iron-sulfur cluster carrier protein ApbC;
2-38 7.02e-04

iron-sulfur cluster carrier protein ApbC;


Pssm-ID: 183270 [Multi-domain]  Cd Length: 369  Bit Score: 40.03  E-value: 7.02e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1054041424   2 IVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDAD 38
Cdd:PRK11670  109 IIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDAD 145
PRK09841 PRK09841
tyrosine-protein kinase;
2-41 7.46e-04

tyrosine-protein kinase;


Pssm-ID: 182106 [Multi-domain]  Cd Length: 726  Bit Score: 40.28  E-value: 7.46e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1054041424   2 IVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDADDQE 41
Cdd:PRK09841  533 ILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRR 572
SRP54 pfam00448
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ...
 11-91 1.43e-03

SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.


Pssm-ID: 459814 [Multi-domain]  Cd Length: 193  Bit Score: 38.29  E-value: 1.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  11 GSGKTTVATNLAIIRAAAGKDVLLVDADdqetstDFTALRNESLEKGAGYTSIKLTG--------ATVRTEIQRL-ANKY 81
Cdd:pfam00448  10 GSGKTTTIAKLAAYLKKKGKKVLLVAAD------TFRAAAIEQLKQLAEKLGVPVFGsktgadpaAVAFDAVEKAkAENY 83

                          90
                  ....*....|
gi 1054041424  82 DDIIIDTGGR 91
Cdd:pfam00448  84 DVVLVDTAGR 93
Fer4_NifH pfam00142
4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family;
1-47 1.50e-03

4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family;


Pssm-ID: 395090  Cd Length: 271  Bit Score: 38.58  E-value: 1.50e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1054041424   1 MIVVVGGiKGGSGKTTVATNLAIIRAAAGKDVLLVDADDQETSTDFT 47
Cdd:pfam00142   1 RQIAIYG-KGGIGKSTTSQNLSAALAEMGKKVLVVGCDPKADSTRLL 46
VirC1 pfam07015
VirC1 protein; This family consists of several bacterial VirC1 proteins. In Agrobacterium ...
 9-225 1.76e-03

VirC1 protein; This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.


Pssm-ID: 148565 [Multi-domain]  Cd Length: 231  Bit Score: 38.32  E-value: 1.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   9 KGGSGKTTVATNLAIIRAAAGKDVLLVDADDQETstdFTALRNESLEKGAG------YTSIKLTGATVRTEIQRLANkYD 82
Cdd:pfam07015  10 KGGAGKTTALMGLCSALASDGKRVALFEADENRP---LTKWRENALRKGTWdpaceiFNADELPLLEQAYEHAEGSG-FD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  83 DIIIDTGGRDTTSQRAALTVADTVLVPFVPRSFDV-WTLERIGQLVEEMRAANPTLVAYTFLNRAdPRGQDNDAAAEVLQ 161
Cdd:pfam07015  86 YALADTHGGSSELNNTIIASSDLLLIPTMLTPLDIdEALATYRYVIELLLTENLAIPTAILRQRV-PVGRLTSSQRFCSD 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1054041424 162 ETGALIFIDTPLGGRKAYSNAAAHGLSVVELKPADQKAVEEIMKLH--RFVFDIKIASKTNQEAME 225
Cdd:pfam07015 165 MLEQLPVFDCPMHERDAFAAMKERGMLHITLENLSQIPSMRLALRNlrTAMEDLDRLGKFVSKALE 230
eps_transp_fam TIGR01005
exopolysaccharide transport protein family; The model describes the exopolysaccharide ...
 2-38 1.76e-03

exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273391 [Multi-domain]  Cd Length: 764  Bit Score: 38.93  E-value: 1.76e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1054041424   2 IVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDAD 38
Cdd:TIGR01005 555 LIAIAGALPDEGKSFIAANFAALIAAGGKRTLLIDAD 591
minD CHL00175
septum-site determining protein; Validated
 2-38 1.84e-03

septum-site determining protein; Validated


Pssm-ID: 214385 [Multi-domain]  Cd Length: 281  Bit Score: 38.60  E-value: 1.84e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1054041424   2 IVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDAD 38
Cdd:CHL00175   17 IIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD 53
arsen_driv_ArsA TIGR04291
arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family ...
 9-104 2.40e-03

arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite).


Pssm-ID: 275109 [Multi-domain]  Cd Length: 566  Bit Score: 38.53  E-value: 2.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424   9 KGGSGKTTVATNLAIIRAAAGKDVLLvdaddqeTSTDFTALRNESLEKGAGYTSIKLTGATVRTEiqrlanKYDDIIIDT 88
Cdd:TIGR04291 329 KGGVGKTTVAAAIAVRLANKGLDVHL-------TTSDPAAHLSVTLTGSLNNLQVSRIDPKQETE------RYRQEVLAT 395

                          90
                  ....*....|....*.
gi 1054041424  89 GGRDTTSQRAALTVAD 104
Cdd:TIGR04291 396 KGKELDEDGKAYLEED 411
Kti12 COG4088
tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) ...
 1-39 3.52e-03

tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) [Translation, ribosomal structure and biogenesis, Defense mechanisms];


Pssm-ID: 443264 [Multi-domain]  Cd Length: 179  Bit Score: 37.01  E-value: 3.52e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1054041424   1 MIVVVGGIKGgSGKTTVATNLAIIRAAAGKDVLLVDADD 39
Cdd:COG4088     5 MLLILTGPPG-SGKTTFAKALAQRLYAEGIAVALLHSDD 42
ArsA_ATPase pfam02374
Anion-transporting ATPase; This Pfam family represents a conserved domain, which is sometimes ...
 2-38 3.56e-03

Anion-transporting ATPase; This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.


Pssm-ID: 396792  Cd Length: 302  Bit Score: 37.71  E-value: 3.56e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1054041424   2 IVVVGGiKGGSGKTTVATNLAIIRAAAGKDVLLVDAD 38
Cdd:pfam02374   3 WIFFGG-KGGVGKTTVSAATAVQLSELGKKVLLISTD 38
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 2-86 3.58e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 36.58  E-value: 3.58e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424    2 IVVVGGIkgGSGKTTVATNLAIIRAAAGKDVLLVDADDQETSTDFTALRNESLEKGAGYTSIKltgaTVRTEIQRLANKY 81
Cdd:smart00382   5 ILIVGPP--GSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGEL----RLRLALALARKLK 78


                   ....*
gi 1054041424   82 DDIII 86
Cdd:smart00382  79 PDVLI 83
PRK13869 PRK13869
plasmid-partitioning protein RepA; Provisional
 2-42 3.90e-03

plasmid-partitioning protein RepA; Provisional


Pssm-ID: 139929 [Multi-domain]  Cd Length: 405  Bit Score: 37.73  E-value: 3.90e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1054041424   2 IVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDADDQET 42
Cdd:PRK13869  123 VIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQAS 163
partition_RepA TIGR03453
plasmid partitioning protein RepA; Members of this family are the RepA (or ParA) protein ...
 2-40 5.44e-03

plasmid partitioning protein RepA; Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. [Mobile and extrachromosomal element functions, Plasmid functions]


Pssm-ID: 274585 [Multi-domain]  Cd Length: 387  Bit Score: 37.27  E-value: 5.44e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1054041424   2 IVVVGGIKGGSGKTTVATNLAIIRAAAGKDVLLVDADDQ 40
Cdd:TIGR03453 106 VIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQ 144
arsen_driv_ArsA TIGR04291
arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family ...
 9-38 6.03e-03

arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite).


Pssm-ID: 275109 [Multi-domain]  Cd Length: 566  Bit Score: 37.37  E-value: 6.03e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1054041424   9 KGGSGKTTVATNLAIIRAAAGKDVLLVDAD 38
Cdd:TIGR04291  11 KGGVGKTSIACATAINLADQGKRVLLVSTD 40
TadZ-like cd17869
pilus assembly protein TadZ; Pilus assembly protein TadZ is involved in the production of a ...
 10-87 6.34e-03

pilus assembly protein TadZ; Pilus assembly protein TadZ is involved in the production of a variant of type IV pili. It is part of the SIMIBI superfamily which contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.


Pssm-ID: 349778 [Multi-domain]  Cd Length: 219  Bit Score: 36.75  E-value: 6.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054041424  10 GGSGKTTVATNLAIIRAAAGKDVLLVDADD---------QETSTD-------------FTALRNESL----EKGAGYTS- 62
Cdd:cd17869    13 GGSGKSTVAAACAYTLAEKGKKTLYLNMERlqstdvffgASGRYLmsdhlytlksrkaNLADKLESCvkqhESGVYYFSp 92

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1054041424  63 -------IKLTGATVRTEIQRL--ANKYDDIIID 87
Cdd:cd17869    93 fksaldiLEIKKDDILHMITKLveAHAYDYIIMD 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH