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Conserved domains on  [gi|1054630727|ref|WP_066398427|]
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ribonuclease YeeF family protein [Fictibacillus phosphorivorans]

Protein Classification

ribonuclease YeeF family protein( domain architecture ID 11475128)

ribonuclease YeeF family protein similar to Bacillus subtilis ribonucleases YobL, YxiD, YxiD, YqcG, and YeeF, which are toxic components of type II toxin-antitoxin (TA) systems, and to Staphylococcus aureus ESAT-6 secretion machinery protein EssD

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YeeF COG5444
Predicted ribonuclease, toxin component of the YeeF-YezG toxin-antitoxin module [Defense ...
 1-356 3.63e-65

Predicted ribonuclease, toxin component of the YeeF-YezG toxin-antitoxin module [Defense mechanisms];


:

Pssm-ID: 444195 [Multi-domain]  Cd Length: 366  Bit Score: 214.25  E-value: 3.63e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054630727   1 MKVLDVSSLDAYLDQLEKSNHEKKESLNEIQRAINALVHLESSFTGKGADAIKSYFSSCHLPLITRLQEYFSSFDEKINT 80
Cdd:COG5444     1 MKVLDVSSLHTAIDQTIKQLKQLREQFVALKKAVEGIAELDDAFKGKGADAIKAFYQECHLPFLDFWLTFIDSYIAFLKK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054630727  81 CKQAVSAFEPADMGKVRQDFLEGDILPPLLKNQNEIEQITSDANQVISSISSIVSIQQLDDTFVNQQIQDSRKFVKKVVR 160
Cdd:COG5444    81 IKSALESLEPSENGFISESFLEHELENGLKKAKEITSELTDEINQILASVSDIVSLPKLSDSDFQEQIDKAKKKRDDTVE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054630727 161 DLEEMDAEQATSISELKSELTFLNQYVVEVEGKIKSGQITVKDFSPNQVTTSYLH---HLMVTGIKGKASSLdSTYASFT 237
Cdd:COG5444   161 KLYELDQNQTTELAQLENDLQTMKTYISKLEEATTGGKISPTNFNAKAYHNFAEYselHKKAGEIKKQTEDT-MMYLALK 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054630727 238 QSS----VYNMIQNKNQVYDfLGLAYYPSTSASKGIEKDTDYLSGNTSKT------GDFTFSAGAGKMeNKWGGWDDFTS 307
Cdd:COG5444   240 KQQeearEINKLAEEDEILI-NRPWYYKAWSTVITFTGEVTGYYDVKRAAtgmaaaGAAPEVGWAGRM-VKLATKGAAKG 317

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1054630727 308 GKSQLGGSSTLTGIHSSIKHDTEILDSSFSQDIGKLEGEASIGGTSLLP 356
Cdd:COG5444   318 SKVLKAGKYGGYGLDSANKFKTVKTALAKAGLALAGGVPYNIKNSKGLK 366
 
Name Accession Description Interval E-value
YeeF COG5444
Predicted ribonuclease, toxin component of the YeeF-YezG toxin-antitoxin module [Defense ...
 1-356 3.63e-65

Predicted ribonuclease, toxin component of the YeeF-YezG toxin-antitoxin module [Defense mechanisms];


Pssm-ID: 444195 [Multi-domain]  Cd Length: 366  Bit Score: 214.25  E-value: 3.63e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054630727   1 MKVLDVSSLDAYLDQLEKSNHEKKESLNEIQRAINALVHLESSFTGKGADAIKSYFSSCHLPLITRLQEYFSSFDEKINT 80
Cdd:COG5444     1 MKVLDVSSLHTAIDQTIKQLKQLREQFVALKKAVEGIAELDDAFKGKGADAIKAFYQECHLPFLDFWLTFIDSYIAFLKK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054630727  81 CKQAVSAFEPADMGKVRQDFLEGDILPPLLKNQNEIEQITSDANQVISSISSIVSIQQLDDTFVNQQIQDSRKFVKKVVR 160
Cdd:COG5444    81 IKSALESLEPSENGFISESFLEHELENGLKKAKEITSELTDEINQILASVSDIVSLPKLSDSDFQEQIDKAKKKRDDTVE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054630727 161 DLEEMDAEQATSISELKSELTFLNQYVVEVEGKIKSGQITVKDFSPNQVTTSYLH---HLMVTGIKGKASSLdSTYASFT 237
Cdd:COG5444   161 KLYELDQNQTTELAQLENDLQTMKTYISKLEEATTGGKISPTNFNAKAYHNFAEYselHKKAGEIKKQTEDT-MMYLALK 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054630727 238 QSS----VYNMIQNKNQVYDfLGLAYYPSTSASKGIEKDTDYLSGNTSKT------GDFTFSAGAGKMeNKWGGWDDFTS 307
Cdd:COG5444   240 KQQeearEINKLAEEDEILI-NRPWYYKAWSTVITFTGEVTGYYDVKRAAtgmaaaGAAPEVGWAGRM-VKLATKGAAKG 317

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1054630727 308 GKSQLGGSSTLTGIHSSIKHDTEILDSSFSQDIGKLEGEASIGGTSLLP 356
Cdd:COG5444   318 SKVLKAGKYGGYGLDSANKFKTVKTALAKAGLALAGGVPYNIKNSKGLK 366
LXG pfam04740
LXG domain of WXG superfamily; This domain is present is the N-terminal region of a group of ...
 2-202 7.68e-44

LXG domain of WXG superfamily; This domain is present is the N-terminal region of a group of polymorphic toxin proteins in bacteria. It is predicted to use Type VII secretion pathway to mediate export of bacterial toxins.


Pssm-ID: 428100 [Multi-domain]  Cd Length: 202  Bit Score: 153.17  E-value: 7.68e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054630727   2 KVLDVSSLDAYLDQLEKSNHEKKESLNEIQRAINALVHLESSFTGKGADAIKSYFSSCHLPLITRLQEYFSSFDEKINTC 81
Cdd:pfam04740   1 KVLDVSELIEGIDQTISELKELRDQLEKVKKAIEGLANLEDSLKGKGGEAIKNFYSELHLPFLDFLQDFIDEYIEFLEQI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054630727  82 KQAVSAFEPADMGKVRQDFLEGDILPPLLKNQNEIEQITSDANQVISSISSIVSIQQLDDTFVNQQIQDSRKFVKKVVRD 161
Cdd:pfam04740  81 KAALESFEPSSNAFIDESFLEHELENGLKKAKEKTEELTDEINSILASVSDIVSLPKLSDSEVQDSLQKAKKKVKDTIEK 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1054630727 162 LEEMDAEQATSISELKSELTFLNQYVVEVEGKIKSGQITVK 202
Cdd:pfam04740 161 LYDFDQEQTSELSELEADLQALKTYVSELEEMTSNGKIAIT 201
 
Name Accession Description Interval E-value
YeeF COG5444
Predicted ribonuclease, toxin component of the YeeF-YezG toxin-antitoxin module [Defense ...
 1-356 3.63e-65

Predicted ribonuclease, toxin component of the YeeF-YezG toxin-antitoxin module [Defense mechanisms];


Pssm-ID: 444195 [Multi-domain]  Cd Length: 366  Bit Score: 214.25  E-value: 3.63e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054630727   1 MKVLDVSSLDAYLDQLEKSNHEKKESLNEIQRAINALVHLESSFTGKGADAIKSYFSSCHLPLITRLQEYFSSFDEKINT 80
Cdd:COG5444     1 MKVLDVSSLHTAIDQTIKQLKQLREQFVALKKAVEGIAELDDAFKGKGADAIKAFYQECHLPFLDFWLTFIDSYIAFLKK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054630727  81 CKQAVSAFEPADMGKVRQDFLEGDILPPLLKNQNEIEQITSDANQVISSISSIVSIQQLDDTFVNQQIQDSRKFVKKVVR 160
Cdd:COG5444    81 IKSALESLEPSENGFISESFLEHELENGLKKAKEITSELTDEINQILASVSDIVSLPKLSDSDFQEQIDKAKKKRDDTVE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054630727 161 DLEEMDAEQATSISELKSELTFLNQYVVEVEGKIKSGQITVKDFSPNQVTTSYLH---HLMVTGIKGKASSLdSTYASFT 237
Cdd:COG5444   161 KLYELDQNQTTELAQLENDLQTMKTYISKLEEATTGGKISPTNFNAKAYHNFAEYselHKKAGEIKKQTEDT-MMYLALK 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054630727 238 QSS----VYNMIQNKNQVYDfLGLAYYPSTSASKGIEKDTDYLSGNTSKT------GDFTFSAGAGKMeNKWGGWDDFTS 307
Cdd:COG5444   240 KQQeearEINKLAEEDEILI-NRPWYYKAWSTVITFTGEVTGYYDVKRAAtgmaaaGAAPEVGWAGRM-VKLATKGAAKG 317

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1054630727 308 GKSQLGGSSTLTGIHSSIKHDTEILDSSFSQDIGKLEGEASIGGTSLLP 356
Cdd:COG5444   318 SKVLKAGKYGGYGLDSANKFKTVKTALAKAGLALAGGVPYNIKNSKGLK 366
LXG pfam04740
LXG domain of WXG superfamily; This domain is present is the N-terminal region of a group of ...
 2-202 7.68e-44

LXG domain of WXG superfamily; This domain is present is the N-terminal region of a group of polymorphic toxin proteins in bacteria. It is predicted to use Type VII secretion pathway to mediate export of bacterial toxins.


Pssm-ID: 428100 [Multi-domain]  Cd Length: 202  Bit Score: 153.17  E-value: 7.68e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054630727   2 KVLDVSSLDAYLDQLEKSNHEKKESLNEIQRAINALVHLESSFTGKGADAIKSYFSSCHLPLITRLQEYFSSFDEKINTC 81
Cdd:pfam04740   1 KVLDVSELIEGIDQTISELKELRDQLEKVKKAIEGLANLEDSLKGKGGEAIKNFYSELHLPFLDFLQDFIDEYIEFLEQI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1054630727  82 KQAVSAFEPADMGKVRQDFLEGDILPPLLKNQNEIEQITSDANQVISSISSIVSIQQLDDTFVNQQIQDSRKFVKKVVRD 161
Cdd:pfam04740  81 KAALESFEPSSNAFIDESFLEHELENGLKKAKEKTEELTDEINSILASVSDIVSLPKLSDSEVQDSLQKAKKKVKDTIEK 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1054630727 162 LEEMDAEQATSISELKSELTFLNQYVVEVEGKIKSGQITVK 202
Cdd:pfam04740 161 LYDFDQEQTSELSELEADLQALKTYVSELEEMTSNGKIAIT 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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