|
Name |
Accession |
Description |
Interval |
E-value |
| PRK05748 |
PRK05748 |
replicative DNA helicase; Provisional |
1-454 |
0e+00 |
|
replicative DNA helicase; Provisional
Pssm-ID: 180232 [Multi-domain] Cd Length: 448 Bit Score: 765.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 1 MSEVWQDRIPPQNIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLL 80
Cdd:PRK05748 1 MSEVAALRVPPQSIEAEQAVLGAIFLDPDALITVSEYLSPDDFYRHAHRLIFRAMLKLSDRGEPIDVVTVTEILDDQGDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 81 EDAGGLSYLSELALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFEQGEEVQSILDDAERSILEVSEKRNRSGFL 160
Cdd:PRK05748 81 EEVGGLSYLAELANSVPTAANIEYYAKIVAEKAMLRRLIRTATEIANDAYEPEDDADEILDEAEKKIFEVSERRNKSGFK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 161 SIAEVLNSTIENIDQLAQNNEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSL 240
Cdd:PRK05748 161 NIKDVLVKAYDRIEMLHNQTGDITGIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 241 EMGAESLVNRMLCAEGSIEASHLRTGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQEKGNLGLILI 320
Cdd:PRK05748 241 EMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 321 DYLQLIEGSGR--ENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRD 398
Cdd:PRK05748 321 DYLQLIQGSGRsgENRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYRD 400
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1055941211 399 DYYDRESgedgettepQNDNVIEVIIEKNRSGARGTVELLFIKEYNKFSSLSPREE 454
Cdd:PRK05748 401 DYYDEET---------ENKNTIEIIIAKQRNGPVGTVELAFQKEYNKFVNLARREE 447
|
|
| DnaB |
TIGR00665 |
replicative DNA helicase; This model describes the helicase DnaB, a homohexameric protein ... |
10-450 |
0e+00 |
|
replicative DNA helicase; This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273206 [Multi-domain] Cd Length: 432 Bit Score: 704.18 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 10 PPQNIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLEDAGGLSYL 89
Cdd:TIGR00665 1 PPHNIEAEQAVLGAILLDNEAIDDVAEILKPEDFYRPAHRLIFQAILDLYEKGEPIDLVTVAEELEKDGELEEVGGLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 90 SELALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFEQGEEVQSILDDAERSILEVSEKRNRSGFLSIAEVLNST 169
Cdd:TIGR00665 81 AELASNVPSAANIEYYAEIVKEKAILRRLIQAGTEIVELAYDPTGDVEELLDEAEQKIFEIAESRTSKGFKSIKEILKEA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 170 IENIDQLAQNNEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSLEMGAESLVN 249
Cdd:TIGR00665 161 VEEIEELYERKGGITGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLVM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 250 RMLCAEGSIEASHLRTGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQEKGnLGLILIDYLQLIEGS 329
Cdd:TIGR00665 241 RMLSSESRVDSQKLRTGRLSDEDWEKLTEAAGELSEAPLYIDDTPGLTITELRAKARRLKREHG-LGLIVIDYLQLMSGS 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 330 GR-ENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRESGED 408
Cdd:TIGR00665 320 GRsENRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEYYNPDSEDK 399
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1055941211 409 GETtepqndnviEVIIEKNRSGARGTVELLFIKEYNKFSSLS 450
Cdd:TIGR00665 400 GIA---------EIIIAKQRNGPTGTVKLAFLGEYTRFENLA 432
|
|
| DnaB |
COG0305 |
Replicative DNA helicase [Replication, recombination and repair]; |
13-450 |
0e+00 |
|
Replicative DNA helicase [Replication, recombination and repair];
Pssm-ID: 440074 [Multi-domain] Cd Length: 429 Bit Score: 677.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 13 NIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLEDAGGLSYLSEL 92
Cdd:COG0305 1 NIEAEQAVLGALLLDNDALDEVADILKPEDFYRPAHRLIFEAILDLYERGEPIDLVTVAEELEKRGELEEVGGAAYLAEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 93 ALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFEQGEEVQSILDDAERSILEVSEKRNRSGFLSIAEVLNSTIEN 172
Cdd:COG0305 81 AENVPSAANIEYYARIVKEKALLRRLIEAGTEIVELAYDEDEDVDELLDEAEQKIFEIAEKRSSKGFVSISDILKEALER 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 173 IDQLAQNNEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSLEMGAESLVNRML 252
Cdd:COG0305 161 IEELYKNGGGITGVPTGFTDLDKLTGGLQPGDLIILAARPSMGKTAFALNIARNAAIKEGKPVAIFSLEMSAEQLVMRLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 253 CAEGSIEASHLRTGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQEKGnLGLILIDYLQLIEGSGR- 331
Cdd:COG0305 241 SSEARIDSSKLRTGKLSDEDWERLSSAAGELSEAPIYIDDTPGLTIAEIRAKARRLKREHG-LGLIVIDYLQLMSGSGRs 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 332 ENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRESgedget 411
Cdd:COG0305 320 ENRQQEISEISRSLKALAKELNVPVIALSQLSRAVEQRTDKRPQLSDLRESGSIEQDADVVMFLYRDEYYNPDS------ 393
|
410 420 430
....*....|....*....|....*....|....*....
gi 1055941211 412 tepQNDNVIEVIIEKNRSGARGTVELLFIKEYNKFSSLS 450
Cdd:COG0305 394 ---EDKGIAEIIIAKQRNGPTGTVKLAFDGEYTRFENLA 429
|
|
| DnaB_C |
pfam03796 |
DnaB-like helicase C terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at ... |
185-448 |
1.77e-161 |
|
DnaB-like helicase C terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Pssm-ID: 427509 [Multi-domain] Cd Length: 254 Bit Score: 455.72 E-value: 1.77e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 185 GLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSLEMGAESLVNRMLCAEGSIEASHLR 264
Cdd:pfam03796 1 GLPTGFTDLDRLTGGLQPGDLIIIAARPSMGKTAFALNIARNAAVKHKKPVAIFSLEMSAEQLVMRLLASEAGVDSQKLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 265 TGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQEKGnLGLILIDYLQLIEGSGR-ENRQQEVSDISR 343
Cdd:pfam03796 81 TGQLTDEDWEKLAKAAGRLSEAPLYIDDTPGLSIAEIRAKARRLKREHG-LGLIVIDYLQLMSGGSRgENRQQEISEISR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 344 QLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRESGEDgettepqndnVIEVI 423
Cdd:pfam03796 160 SLKALAKELNVPVIALSQLSRAVEQRTDKRPQLSDLRESGAIEQDADVVMFLYRDEYYNPKEPEG----------KAEII 229
|
250 260
....*....|....*....|....*
gi 1055941211 424 IEKNRSGARGTVELLFIKEYNKFSS 448
Cdd:pfam03796 230 IAKQRNGPTGTVKLAFLGEYTRFEN 254
|
|
| DnaB_C |
cd00984 |
C-terminal domain of DnaB helicase; DnaB helicase C-terminal domain. The hexameric helicase ... |
185-447 |
3.95e-144 |
|
C-terminal domain of DnaB helicase; DnaB helicase C-terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Pssm-ID: 410864 [Multi-domain] Cd Length: 256 Bit Score: 411.91 E-value: 3.95e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 185 GLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSLEMGAESLVNRMLCAEGSIEASHLR 264
Cdd:cd00984 1 GLPTGFTDLDKLTGGLQPGDLIIIAARPSMGKTAFALNIAENIALDEGLPVLFFSLEMSAEQLAERLLSSESGVSLSKLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 265 TGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQEKGNLGLILIDYLQLIEGSGR-ENRQQEVSDISR 343
Cdd:cd00984 81 TGRLDDEDWERLTAAMGELSELPLYIDDTPGLTVDEIRAKARRLKREHGGLGLIVIDYLQLIRGSKRaENRQQEVAEISR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 344 QLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRESGEDGETtepqndnviEVI 423
Cdd:cd00984 161 SLKALAKELNVPVIALSQLNRGVESRTDKRPMLSDLRESGSIEQDADVVIFLYRDEYYDKDSEDKGIA---------EII 231
|
250 260
....*....|....*....|....
gi 1055941211 424 IEKNRSGARGTVELLFIKEYNKFS 447
Cdd:cd00984 232 IAKNRNGPTGTVYLAFNPEYTRFT 255
|
|
| dnaB_SPI-7_type |
NF040583 |
SPI-7-type island replicative DNA helicase; Members of this family are DnaB-PI, a ... |
10-449 |
1.36e-143 |
|
SPI-7-type island replicative DNA helicase; Members of this family are DnaB-PI, a pathogenicity island (PI) variant of the replicative DNA helicase DnaB. Members are found with other conjugative element replication proteins such as ParA, ParB in genetic islands whose core proteins (but not cargo proteins) are shared with the Salmonella typhi SPI-7 island.
Pssm-ID: 468557 [Multi-domain] Cd Length: 434 Bit Score: 417.49 E-value: 1.36e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 10 PPQNIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLEDAGGLSYL 89
Cdd:NF040583 1 GPYSVEAEQSVLGGLMLDNDRWDDVALLLAADDFYSRAHRIIFRAMARLVSAGQPIDLITLSESLEQQGQLEQVGGFAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 90 SELALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFEQGEEVQSILDDAERSILEVSEKRNRSGFLSIAEVLNST 169
Cdd:NF040583 81 AELSKNTPSAANIVAYAEIVAEYSRARQLLALGHDLSADASAPRADIADLLEQAEQRLFDIAEQAEPQQEVTLIEGLETL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 170 IENIDQLAQNNEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQN-VGTKTDRAVAIFSLEMGAESLV 248
Cdd:NF040583 161 VSELELRCQSGNGITGTPTGFAELDEMTCGLQPGDLILLAARPSMGKTALALAFCLGaLRGKPDKVVQIYSLEMPTEQLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 249 NRMLCAEGSIEASHLRTGQLSEEEWSNLIVAMGSLSRAN--IYIDDTPGIKISEIRAKCRKLAQEKGNLGLILIDYLQLI 326
Cdd:NF040583 241 MRLVSMLGRVPLQRLRSGLLDDEDWARISQAMALLTDWKdrLIIDDTSYLTPALLRARARRNARKYGKPSLIMVDYLQLM 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 327 EGSGRENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRESG 406
Cdd:NF040583 321 RCPGQENRTQEIAEISRSLKALAKEMGCPVLALSQLNRQLESRADKRPNNGDLRDSGALEQDADLIMFIYRDEVYNPNTP 400
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1055941211 407 EDGettepqndnVIEVIIEKNRSGARGTVELLFIKEYNKFSSL 449
Cdd:NF040583 401 DKG---------IAEIIIGKQRQGPTGTVKVQFDGRYTRFSDL 434
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK05748 |
PRK05748 |
replicative DNA helicase; Provisional |
1-454 |
0e+00 |
|
replicative DNA helicase; Provisional
Pssm-ID: 180232 [Multi-domain] Cd Length: 448 Bit Score: 765.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 1 MSEVWQDRIPPQNIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLL 80
Cdd:PRK05748 1 MSEVAALRVPPQSIEAEQAVLGAIFLDPDALITVSEYLSPDDFYRHAHRLIFRAMLKLSDRGEPIDVVTVTEILDDQGDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 81 EDAGGLSYLSELALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFEQGEEVQSILDDAERSILEVSEKRNRSGFL 160
Cdd:PRK05748 81 EEVGGLSYLAELANSVPTAANIEYYAKIVAEKAMLRRLIRTATEIANDAYEPEDDADEILDEAEKKIFEVSERRNKSGFK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 161 SIAEVLNSTIENIDQLAQNNEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSL 240
Cdd:PRK05748 161 NIKDVLVKAYDRIEMLHNQTGDITGIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 241 EMGAESLVNRMLCAEGSIEASHLRTGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQEKGNLGLILI 320
Cdd:PRK05748 241 EMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 321 DYLQLIEGSGR--ENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRD 398
Cdd:PRK05748 321 DYLQLIQGSGRsgENRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYRD 400
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1055941211 399 DYYDRESgedgettepQNDNVIEVIIEKNRSGARGTVELLFIKEYNKFSSLSPREE 454
Cdd:PRK05748 401 DYYDEET---------ENKNTIEIIIAKQRNGPVGTVELAFQKEYNKFVNLARREE 447
|
|
| DnaB |
TIGR00665 |
replicative DNA helicase; This model describes the helicase DnaB, a homohexameric protein ... |
10-450 |
0e+00 |
|
replicative DNA helicase; This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273206 [Multi-domain] Cd Length: 432 Bit Score: 704.18 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 10 PPQNIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLEDAGGLSYL 89
Cdd:TIGR00665 1 PPHNIEAEQAVLGAILLDNEAIDDVAEILKPEDFYRPAHRLIFQAILDLYEKGEPIDLVTVAEELEKDGELEEVGGLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 90 SELALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFEQGEEVQSILDDAERSILEVSEKRNRSGFLSIAEVLNST 169
Cdd:TIGR00665 81 AELASNVPSAANIEYYAEIVKEKAILRRLIQAGTEIVELAYDPTGDVEELLDEAEQKIFEIAESRTSKGFKSIKEILKEA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 170 IENIDQLAQNNEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSLEMGAESLVN 249
Cdd:TIGR00665 161 VEEIEELYERKGGITGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLVM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 250 RMLCAEGSIEASHLRTGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQEKGnLGLILIDYLQLIEGS 329
Cdd:TIGR00665 241 RMLSSESRVDSQKLRTGRLSDEDWEKLTEAAGELSEAPLYIDDTPGLTITELRAKARRLKREHG-LGLIVIDYLQLMSGS 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 330 GR-ENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRESGED 408
Cdd:TIGR00665 320 GRsENRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEYYNPDSEDK 399
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1055941211 409 GETtepqndnviEVIIEKNRSGARGTVELLFIKEYNKFSSLS 450
Cdd:TIGR00665 400 GIA---------EIIIAKQRNGPTGTVKLAFLGEYTRFENLA 432
|
|
| DnaB |
COG0305 |
Replicative DNA helicase [Replication, recombination and repair]; |
13-450 |
0e+00 |
|
Replicative DNA helicase [Replication, recombination and repair];
Pssm-ID: 440074 [Multi-domain] Cd Length: 429 Bit Score: 677.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 13 NIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLEDAGGLSYLSEL 92
Cdd:COG0305 1 NIEAEQAVLGALLLDNDALDEVADILKPEDFYRPAHRLIFEAILDLYERGEPIDLVTVAEELEKRGELEEVGGAAYLAEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 93 ALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFEQGEEVQSILDDAERSILEVSEKRNRSGFLSIAEVLNSTIEN 172
Cdd:COG0305 81 AENVPSAANIEYYARIVKEKALLRRLIEAGTEIVELAYDEDEDVDELLDEAEQKIFEIAEKRSSKGFVSISDILKEALER 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 173 IDQLAQNNEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSLEMGAESLVNRML 252
Cdd:COG0305 161 IEELYKNGGGITGVPTGFTDLDKLTGGLQPGDLIILAARPSMGKTAFALNIARNAAIKEGKPVAIFSLEMSAEQLVMRLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 253 CAEGSIEASHLRTGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQEKGnLGLILIDYLQLIEGSGR- 331
Cdd:COG0305 241 SSEARIDSSKLRTGKLSDEDWERLSSAAGELSEAPIYIDDTPGLTIAEIRAKARRLKREHG-LGLIVIDYLQLMSGSGRs 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 332 ENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRESgedget 411
Cdd:COG0305 320 ENRQQEISEISRSLKALAKELNVPVIALSQLSRAVEQRTDKRPQLSDLRESGSIEQDADVVMFLYRDEYYNPDS------ 393
|
410 420 430
....*....|....*....|....*....|....*....
gi 1055941211 412 tepQNDNVIEVIIEKNRSGARGTVELLFIKEYNKFSSLS 450
Cdd:COG0305 394 ---EDKGIAEIIIAKQRNGPTGTVKLAFDGEYTRFENLA 429
|
|
| PRK05595 |
PRK05595 |
replicative DNA helicase; Provisional |
8-451 |
1.73e-166 |
|
replicative DNA helicase; Provisional
Pssm-ID: 235525 [Multi-domain] Cd Length: 444 Bit Score: 476.24 E-value: 1.73e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 8 RIPPQNIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLEDAGGLS 87
Cdd:PRK05595 6 RSLPQSIEAEQSVLGAMIIDKTSIAEAAEVLKSEDFYRDSHKVIFSAIIELYQKDIAVDMLTLTENLKSTDKLEAAGGVT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 88 YLSELALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFEQGEEVQSILDDAERSILEVSEKRNRSGFLSIAEVLN 167
Cdd:PRK05595 86 YITELSNSIVSTANIQSYIKIVKDKSTLRRLIKSSTEIIENSYNNQDDVEKVIDSAEKKIFDISEKRTTSDFEPLSNVLE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 168 STIENIDQLAQNNEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSLEMGAESL 247
Cdd:PRK05595 166 RGFEQIENLFNNKGETTGVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 248 VNRMLCAEGSIEASHLRTGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQEKGnLGLILIDYLQLIE 327
Cdd:PRK05595 246 AYKLLCSEANVDMLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIEHG-IDMILIDYLQLMS 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 328 GS-GRENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRESg 406
Cdd:PRK05595 325 GGkGSESRQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADVVMFLYRDEYYNKET- 403
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1055941211 407 edgettepQNDNVIEVIIEKNRSGARGTVELLFIKEYNKFSSLSP 451
Cdd:PRK05595 404 --------EDKNVAECIIAKQRNGPTGTVKLAWLGQYSKFGNLDV 440
|
|
| PRK07773 |
PRK07773 |
replicative DNA helicase; Validated |
7-391 |
3.66e-162 |
|
replicative DNA helicase; Validated
Pssm-ID: 236093 [Multi-domain] Cd Length: 886 Bit Score: 480.02 E-value: 3.66e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 7 DRIPPQNIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLEDAGGL 86
Cdd:PRK07773 21 GRQPPQDLAAEQSVLGGMLLSKEAIARVLERLRPGAFYRPAHQNIYDAILDLYGRGEPADLVTVAAELDRRGLLERIGGA 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 87 SYLSELALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFEQGEEVQSILDDAERSILEVSEKRNRSGFLSIAEVL 166
Cdd:PRK07773 101 PYLHTLISTVPTAANADYYARIVAEKALLRRLIEAGTRIVQYGYAEGADVAEVVDRAQAEIYDVTDRRLSEDFVALEDLL 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 167 NSTIENIDQLAQNNEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSLEMGAES 246
Cdd:PRK07773 181 QPTFDEIDAIASSGGLARGVPTGFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQ 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 247 LVNRMLCAEGSIEASHLRTGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQEKgNLGLILIDYLQLI 326
Cdd:PRK07773 261 LVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQEA-NLGLIVVDYLQLM 339
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1055941211 327 EGSGR-ENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADI 391
Cdd:PRK07773 340 TSGKKyENRQQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQRTDKRPMLSDLRESGCLTGDTLI 405
|
|
| DnaB_C |
pfam03796 |
DnaB-like helicase C terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at ... |
185-448 |
1.77e-161 |
|
DnaB-like helicase C terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Pssm-ID: 427509 [Multi-domain] Cd Length: 254 Bit Score: 455.72 E-value: 1.77e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 185 GLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSLEMGAESLVNRMLCAEGSIEASHLR 264
Cdd:pfam03796 1 GLPTGFTDLDRLTGGLQPGDLIIIAARPSMGKTAFALNIARNAAVKHKKPVAIFSLEMSAEQLVMRLLASEAGVDSQKLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 265 TGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQEKGnLGLILIDYLQLIEGSGR-ENRQQEVSDISR 343
Cdd:pfam03796 81 TGQLTDEDWEKLAKAAGRLSEAPLYIDDTPGLSIAEIRAKARRLKREHG-LGLIVIDYLQLMSGGSRgENRQQEISEISR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 344 QLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRESGEDgettepqndnVIEVI 423
Cdd:pfam03796 160 SLKALAKELNVPVIALSQLSRAVEQRTDKRPQLSDLRESGAIEQDADVVMFLYRDEYYNPKEPEG----------KAEII 229
|
250 260
....*....|....*....|....*
gi 1055941211 424 IEKNRSGARGTVELLFIKEYNKFSS 448
Cdd:pfam03796 230 IAKQRNGPTGTVKLAFLGEYTRFEN 254
|
|
| PRK08760 |
PRK08760 |
replicative DNA helicase; Provisional |
2-450 |
4.89e-148 |
|
replicative DNA helicase; Provisional
Pssm-ID: 181547 [Multi-domain] Cd Length: 476 Bit Score: 430.49 E-value: 4.89e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 2 SEVWQDRIPPQNIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLE 81
Cdd:PRK08760 25 PRLDQLRVPPHSVEAEQAVLGGLMLAPDALDRVNDQLTENDFYRRDHRLIYRAIRELSEKDRPFDAVTLGEWFESQGKLE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 82 DAGGLSYLSELALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFE-QGEEVQSILDDAERSILEVSEK--RNRSG 158
Cdd:PRK08760 105 QVGDGAYLIELASTTPSAANIAAYAEIVRDKAVLRQLIEVGTTIVNDGFQpEGRESIELLASAEKAVFKIAEAgaRGRTD 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 159 FLSIAEVLNSTIENIDQLAQNNEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIF 238
Cdd:PRK08760 185 FVAMPGALKDAFEELRNRFENGGNITGLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVF 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 239 SLEMGAESLVNRMLCAEGSIEASHLRTGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQEKgNLGLI 318
Cdd:PRK08760 265 SMEMSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREH-DLGLI 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 319 LIDYLQLIEGSG-RENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYR 397
Cdd:PRK08760 344 VIDYLQLMSVPGnSENRATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIYR 423
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1055941211 398 DDYYDRESGEDgettepqnDNVIEVIIEKNRSGARGTVELLFIKEYNKFSSLS 450
Cdd:PRK08760 424 DDYYNKENSPD--------KGLAEIIIGKHRGGPTGSCKLKFFGEYTRFDNLA 468
|
|
| PRK07004 |
PRK07004 |
replicative DNA helicase; Provisional |
8-455 |
5.90e-146 |
|
replicative DNA helicase; Provisional
Pssm-ID: 235907 [Multi-domain] Cd Length: 460 Bit Score: 424.32 E-value: 5.90e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 8 RIPPQNIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLEDAGGLS 87
Cdd:PRK07004 13 KVPPHSIEAEQSVLGGLLLDNAAWDRIADFLSQSDFYRYDHRIIFEHIGRLIAATRPADVITVYEALTTSGKAEEVGGLA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 88 YLSELALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFE-QGEEVQSILDDAERSILEVSEK--RNRSGFLSIAE 164
Cdd:PRK07004 93 YLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSVADEISADAFNpQGKEVRQLLDEAESKVFSIAEEgaRGTQGFLEIGP 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 165 VLNSTIENIDQL--AQNNEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSLEM 242
Cdd:PRK07004 173 LLTQVVERIDTLyhTANPSDVTGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEM 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 243 GAESLVNRMLCAEGSIEASHLRTGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQEKGNLGLILIDY 322
Cdd:PRK07004 253 PGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDY 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 323 LQLIEG-SGRENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYY 401
Cdd:PRK07004 333 LQLMSGsSQGENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVY 412
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1055941211 402 DRESGEDGETtepqndnviEVIIEKNRSGARGTVELLFIKEYNKFSSLSPREEF 455
Cdd:PRK07004 413 NPDSPDKGTA---------EIIIGKQRNGPIGPVRLTFLGQYTKFDNFAGAQNF 457
|
|
| DnaB_C |
cd00984 |
C-terminal domain of DnaB helicase; DnaB helicase C-terminal domain. The hexameric helicase ... |
185-447 |
3.95e-144 |
|
C-terminal domain of DnaB helicase; DnaB helicase C-terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Pssm-ID: 410864 [Multi-domain] Cd Length: 256 Bit Score: 411.91 E-value: 3.95e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 185 GLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSLEMGAESLVNRMLCAEGSIEASHLR 264
Cdd:cd00984 1 GLPTGFTDLDKLTGGLQPGDLIIIAARPSMGKTAFALNIAENIALDEGLPVLFFSLEMSAEQLAERLLSSESGVSLSKLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 265 TGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQEKGNLGLILIDYLQLIEGSGR-ENRQQEVSDISR 343
Cdd:cd00984 81 TGRLDDEDWERLTAAMGELSELPLYIDDTPGLTVDEIRAKARRLKREHGGLGLIVIDYLQLIRGSKRaENRQQEVAEISR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 344 QLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRESGEDGETtepqndnviEVI 423
Cdd:cd00984 161 SLKALAKELNVPVIALSQLNRGVESRTDKRPMLSDLRESGSIEQDADVVIFLYRDEYYDKDSEDKGIA---------EII 231
|
250 260
....*....|....*....|....
gi 1055941211 424 IEKNRSGARGTVELLFIKEYNKFS 447
Cdd:cd00984 232 IAKNRNGPTGTVYLAFNPEYTRFT 255
|
|
| dnaB_SPI-7_type |
NF040583 |
SPI-7-type island replicative DNA helicase; Members of this family are DnaB-PI, a ... |
10-449 |
1.36e-143 |
|
SPI-7-type island replicative DNA helicase; Members of this family are DnaB-PI, a pathogenicity island (PI) variant of the replicative DNA helicase DnaB. Members are found with other conjugative element replication proteins such as ParA, ParB in genetic islands whose core proteins (but not cargo proteins) are shared with the Salmonella typhi SPI-7 island.
Pssm-ID: 468557 [Multi-domain] Cd Length: 434 Bit Score: 417.49 E-value: 1.36e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 10 PPQNIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLEDAGGLSYL 89
Cdd:NF040583 1 GPYSVEAEQSVLGGLMLDNDRWDDVALLLAADDFYSRAHRIIFRAMARLVSAGQPIDLITLSESLEQQGQLEQVGGFAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 90 SELALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFEQGEEVQSILDDAERSILEVSEKRNRSGFLSIAEVLNST 169
Cdd:NF040583 81 AELSKNTPSAANIVAYAEIVAEYSRARQLLALGHDLSADASAPRADIADLLEQAEQRLFDIAEQAEPQQEVTLIEGLETL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 170 IENIDQLAQNNEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQN-VGTKTDRAVAIFSLEMGAESLV 248
Cdd:NF040583 161 VSELELRCQSGNGITGTPTGFAELDEMTCGLQPGDLILLAARPSMGKTALALAFCLGaLRGKPDKVVQIYSLEMPTEQLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 249 NRMLCAEGSIEASHLRTGQLSEEEWSNLIVAMGSLSRAN--IYIDDTPGIKISEIRAKCRKLAQEKGNLGLILIDYLQLI 326
Cdd:NF040583 241 MRLVSMLGRVPLQRLRSGLLDDEDWARISQAMALLTDWKdrLIIDDTSYLTPALLRARARRNARKYGKPSLIMVDYLQLM 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 327 EGSGRENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRESG 406
Cdd:NF040583 321 RCPGQENRTQEIAEISRSLKALAKEMGCPVLALSQLNRQLESRADKRPNNGDLRDSGALEQDADLIMFIYRDEVYNPNTP 400
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1055941211 407 EDGettepqndnVIEVIIEKNRSGARGTVELLFIKEYNKFSSL 449
Cdd:NF040583 401 DKG---------IAEIIIGKQRQGPTGTVKVQFDGRYTRFSDL 434
|
|
| PRK09165 |
PRK09165 |
replicative DNA helicase; Provisional |
8-452 |
2.45e-143 |
|
replicative DNA helicase; Provisional
Pssm-ID: 181676 [Multi-domain] Cd Length: 497 Bit Score: 418.90 E-value: 2.45e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 8 RIPPQNIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLEDAGGLS 87
Cdd:PRK09165 19 RELPHNIEAEQALLGAILINNRALDRVSDFLKPEHFFEPLHQRIYEAIAKIIRKGKLATPVTLKTFLENDEALGELGGVQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 88 YLSELALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFEQGEEV--QSILDDAERSILEVSEK-RNRSGFLSIAE 164
Cdd:PRK09165 99 YLAKLATEAVTIINARDYGRIIYDLALRRELINIGEDVVNNAYDAPVDVapQEQIEDAEQKLYELAETgRYEGGFQSFGT 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 165 VLNSTIENIDQLAQNNEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNV--------------GTK 230
Cdd:PRK09165 179 AITEAVDMANAAFKRDGHLSGISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAakayrreaqpdgskKAV 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 231 TDRAVAIFSLEMGAESLVNRMLCAEGSIEASHLRTGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQ 310
Cdd:PRK09165 259 NGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 311 EKGnLGLILIDYLQLIEGSGR---ENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQ 387
Cdd:PRK09165 339 QHG-LDLLVVDYLQLIRGSSKrssDNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGSIEQ 417
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1055941211 388 DADIVAFLYRDDYY--DRESGE-DGETTEPQND-----NVIEVIIEKNRSGARGTVELLFIKEYNKFSSLSPR 452
Cdd:PRK09165 418 DADVVMFVYREEYYlkRKEPREgTPKHEEWQEKmekvhNKAEVIIAKQRHGPTGTVKLAFESEFTRFGDLADR 490
|
|
| phage_DnaB |
TIGR03600 |
phage replicative helicase, DnaB family, HK022 subfamily; Members of this family are phage (or ... |
13-439 |
5.01e-143 |
|
phage replicative helicase, DnaB family, HK022 subfamily; Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 274672 [Multi-domain] Cd Length: 420 Bit Score: 415.65 E-value: 5.01e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 13 NIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLEDAGGLSYLSEL 92
Cdd:TIGR03600 1 SIEAEQAVLGGLLLDNDFIERVMAILKPEHFYSQDHRIIFEAMLDMFAENRPVDPLTLADKLEAEGEAEKVGGLAYLAEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 93 ALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFE-QGEEVQSILDDAERSILEVSEKRNRS-GFLSIAEVLNSTI 170
Cdd:TIGR03600 81 SNNTPSAANISSYARIVREKAKERKLIAACQRIITLACSpDGGTAEQKVEEAQAALLALTMSDGQEdGFVTFGEVLEDVV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 171 ENIDQLAQNNEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSLEMGAESLVNR 250
Cdd:TIGR03600 161 RDLDKRFNPKGELTGLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGER 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 251 MLCAEGSIEASHLRTGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQEKGNLGLILIDYLQLIEGSG 330
Cdd:TIGR03600 241 LLASKSGINTGNIRTGRFNDSEFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPAR 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 331 RENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRESGEDGE 410
Cdd:TIGR03600 321 GRDRNEELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGYYDAREPPAGI 400
|
410 420
....*....|....*....|....*....
gi 1055941211 411 TtepqndnviEVIIEKNRSGARGTVELLF 439
Cdd:TIGR03600 401 A---------ELILAKNRHGPTGTVELLF 420
|
|
| PRK05636 |
PRK05636 |
replicative DNA helicase; Provisional |
8-450 |
1.22e-142 |
|
replicative DNA helicase; Provisional
Pssm-ID: 180177 [Multi-domain] Cd Length: 505 Bit Score: 417.70 E-value: 1.22e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 8 RIPPQNIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLEDAGGLS 87
Cdd:PRK05636 68 RQPPYDNEAEQGVLGAMLLSPDTVIDIVEVLTPEDFYRPAHQLIFQAIIDLFSDNKEIDPVIVAGRLDRTNDLERVGGAP 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 88 YLSELALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFE--QGEEVQSILDDAERSILEVSEKRNRSGFLSIAEV 165
Cdd:PRK05636 148 YLHTLIQSVPTAANARYYAEIVSEKAVLRRLVDAGTRVVQLGYEgdEGAEIDSVIDRAQQEVFAVSQKNQSEDYAVLADI 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 166 LNSTIENIDQLAQNNEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSLEMGAE 245
Cdd:PRK05636 228 LDPTMDELEMLSSQGGIATGIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKS 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 246 SLVNRMLCAEGSIEASHLRTGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQeKGNLGLILIDYLQL 325
Cdd:PRK05636 308 EIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQL 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 326 IEGSGR-ENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRE 404
Cdd:PRK05636 387 MSSGKRvESRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLLYRPDSQDKD 466
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1055941211 405 SGEDGETtepqndnviEVIIEKNRSGARGTVELLFIKEYNKFSSLS 450
Cdd:PRK05636 467 DERAGEA---------DIILAKHRGGPIDTVQVAHQLHYSRFVDMA 503
|
|
| PRK08006 |
PRK08006 |
replicative DNA helicase DnaB; |
8-446 |
1.77e-137 |
|
replicative DNA helicase DnaB;
Pssm-ID: 181193 [Multi-domain] Cd Length: 471 Bit Score: 403.23 E-value: 1.77e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 8 RIPPQNIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLEDAGGLS 87
Cdd:PRK08006 25 KVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGGFA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 88 YLSELALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFE-QGEEVQSILDDAERSILEVSEKR--NRSGFLSIAE 164
Cdd:PRK08006 105 YLAELSKNTPSAANISAYADIVRERAVVREMISVANEIADAGYDpQGRTSEDLLDLAESRVFQIAESRanKDEGPKNIAD 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 165 VLNSTIENIDQLAQN-NEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSLEMG 243
Cdd:PRK08006 185 ILDATVARIEQLFQQpHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMP 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 244 AESLVNRMLCAEGSIEASHLRTGQLSEEEWSNLIVAMGSL-SRANIYIDDTPGIKISEIRAKCRKLAQEKGNLGLILIDY 322
Cdd:PRK08006 265 GEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGILlEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDY 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 323 LQLIE-GSGRENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYY 401
Cdd:PRK08006 345 LQLMRvPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVY 424
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1055941211 402 DRESGEDGettepqndnVIEVIIEKNRSGARGTVELLFIKEYNKF 446
Cdd:PRK08006 425 HENSDLKG---------IAEIIIGKQRNGPIGTVRLTFNGQWSRF 460
|
|
| PRK06904 |
PRK06904 |
replicative DNA helicase; Validated |
6-455 |
1.18e-136 |
|
replicative DNA helicase; Validated
Pssm-ID: 136106 [Multi-domain] Cd Length: 472 Bit Score: 401.29 E-value: 1.18e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 6 QDRIPPQNIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLEDAGG 85
Cdd:PRK06904 19 QVLIPPHSIEAEQAVLGGIMLDNRHWDSVAERVIADDFYTFEHRIIFQEMELLFRQNTPIDLLTLDQALKTKGKSDEVGG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 86 LSYLSELALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFE-QGEEVQSILDDAERSILEVSEKRNRS--GFLSI 162
Cdd:PRK06904 99 FAYLAELSNNTPSAANILAYADIVREKAILRELISVGNNIAKNAYSpKGQDIKDILDEAERDVFSIAEKRTTAneGPQNV 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 163 AEVLNSTIENIDQLA--QNNEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSL 240
Cdd:PRK06904 179 INLLENTIDKIENLAatPTNNGVTGVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 241 EMGAESLVNRMLCAEGSIEASHLRTGQ-LSEEEWSNLIVAMGSLS-RANIYIDDTPGIKISEIRAKCRKLAQEKGNLGLI 318
Cdd:PRK06904 259 EMPAEQIMMRMLASLSRVDQTKIRTGQnLDQQDWAKISSTVGMFKqKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLI 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 319 LIDYLQLIEGSG-RENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYR 397
Cdd:PRK06904 339 MVDYLQLMRAPGfEDNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLIMFIYR 418
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1055941211 398 DDYYDresgedgETTEpQNDNVIEVIIEKNRSGARGTVELLFIKEYNKFSSLSPREEF 455
Cdd:PRK06904 419 DEVYN-------ETTE-DNKGVAEIIIGKQRNGPIGRVRLAFQGQYSRFDNLANIPQY 468
|
|
| PRK08506 |
PRK08506 |
replicative DNA helicase; Provisional |
12-446 |
1.42e-136 |
|
replicative DNA helicase; Provisional
Pssm-ID: 236278 [Multi-domain] Cd Length: 472 Bit Score: 400.93 E-value: 1.42e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 12 QNIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLEDagglSYLSE 91
Cdd:PRK08506 5 YDLDIERAVLSSILFSPDKFEEIASVLEPKDFYLPAHQDIFEAMLKLHNEDEPIDEEFIRKKLPKDKKIDE----EILLE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 92 LaLAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFEQGEEVQSILDDAERSILEVSEKRNRSGFLSIAEVLNSTIE 171
Cdd:PRK08506 81 I-LATNPIDNIEAYVEEIKEKSIKRELLSLANTIPEQAVEEDQKSSDILDEVERELYSITNGSNSEDFKDSKEVIESTME 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 172 NI-DQLAQNNEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVgTKTDRAVAIFSLEMGAESLVNR 250
Cdd:PRK08506 160 HIkKQKRLGNKDIIGLDTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKA-LNQDKGVAFFSLEMPAEQLMLR 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 251 MLCAEGSIEASHLRTGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQEKGNLGLILIDYLQLIEGSG 330
Cdd:PRK08506 239 MLSAKTSIPLQNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSG 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 331 REN-RQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYY------DR 403
Cdd:PRK08506 319 NFKdRHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDDVYkereekEK 398
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 1055941211 404 ES-----GEDGETTEPQNDNV--IEVIIEKNRSGARGTVELLFIKEYNKF 446
Cdd:PRK08506 399 EKkakkeGKEERRIHFQNKSIeeAEIIIGKNRNGPTGTVKLRFQKEFTRF 448
|
|
| PRK08840 |
PRK08840 |
replicative DNA helicase; Provisional |
8-446 |
8.59e-136 |
|
replicative DNA helicase; Provisional
Pssm-ID: 181562 [Multi-domain] Cd Length: 464 Bit Score: 398.59 E-value: 8.59e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 8 RIPPQNIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLEDAGGLS 87
Cdd:PRK08840 18 KVPPHSLEAEQSVIGGLLLDNERWDTVAEKVVASDFYSRPHRLIFEGVKSILEAGKPLDLITLSEHLERREQLEDVGGFA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 88 YLSELALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFE-QGEEVQSILDDAERSILEVSEKR--NRSGFLSIAE 164
Cdd:PRK08840 98 YLADLAKNTPSAANINAYADIVAERALVRNLIGVANEIADAGYDpQGRTSEDLLDMAESKVFAIAEARtsENEGPQNVDS 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 165 VLNSTIENIDQLAQNNEE-ITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSLEMG 243
Cdd:PRK08840 178 ILEKTLERIELLYKTPQDgVTGVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 244 AESLVNRMLCAEGSIEASHLRTGQLSEEEWSNLIVAMGSL-SRANIYIDDTPGIKISEIRAKCRKLAQEKGNLGLILIDY 322
Cdd:PRK08840 258 AEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGILmEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDY 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 323 LQLIEGSG-RENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYY 401
Cdd:PRK08840 338 LQLMRVPAlSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVY 417
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1055941211 402 DRESGEDGettepqndnVIEVIIEKNRSGARGTVELLFIKEYNKF 446
Cdd:PRK08840 418 NPDSPLKG---------TAEIIIGKQRNGPIGSVRLTFQGQYSRF 453
|
|
| PRK06321 |
PRK06321 |
replicative DNA helicase; Provisional |
9-453 |
2.84e-118 |
|
replicative DNA helicase; Provisional
Pssm-ID: 180528 [Multi-domain] Cd Length: 472 Bit Score: 354.15 E-value: 2.84e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 9 IPPQNIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLEDAGGLSY 88
Cdd:PRK06321 15 SPPNSKESEMIVLGCMLTSVNYLNLAANQLQEDDFYFLEHKIIFRVLQDAFKSDKPIDVHLAGEELKRRNQLNVIGGPSY 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 89 LSELALAVPTAANVAYYAKIVEEKSLLRNLIQTATGIVTKGFEQGEEVQSILDDAERSILEVSEKRNRSGFLSIAEVLNS 168
Cdd:PRK06321 95 LITLAEFAGTSAYIEEYAEIIRSKSILRKMIQTAKEIEKKALEEPKDVATALDEAQNLLFKISQTTNLAQYVLVADKLKG 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 169 TI---------------ENIDQLAQNNEE--ITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNVGTKT 231
Cdd:PRK06321 175 LTsskdkpfllqlqerqEAFQQSAQGDSSpmISGIPTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQN 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 232 DRAVAIFSLEMGAESLVNRMLCAEGSIEASHLRTGQLSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLaQE 311
Cdd:PRK06321 255 RLPVGIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRM-KE 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 312 KGNLGLILIDYLQLIEGSGR----ENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQ 387
Cdd:PRK06321 334 SYDIQFLIIDYLQLLSGSGNlrnsESRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIEQ 413
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1055941211 388 DADIVAFLYRDDYYDresgedgettepQNDN--VIEVIIEKNRSGARGTVELLFIKEYNKFSSLSPRE 453
Cdd:PRK06321 414 DSDLVMFLLRREYYD------------PNDKpgTAELIVAKNRHGSIGSVPLVFEKEFARFRNYAACE 469
|
|
| PRK06749 |
PRK06749 |
replicative DNA helicase; Provisional |
12-446 |
1.52e-105 |
|
replicative DNA helicase; Provisional
Pssm-ID: 168658 [Multi-domain] Cd Length: 428 Bit Score: 319.97 E-value: 1.52e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 12 QNIEAEQAVLGSVFLDAETIIDAMeyIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQgNLLEDAGGLSYLSE 91
Cdd:PRK06749 4 QNVEAEKTVLGSLLLDGELIKECR--LTEQYFSMPVHKSIFQLMRKMEDEGQPIDLVTFTSRVDP-NFLKGIGGMEYFIG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 92 LALAVPTAANVAYYAKIVEEKSLLRNliqtATGIVTKGFE--QGEEVQSILDDAERSILEVSEKRNRSGFlsiaEVLNST 169
Cdd:PRK06749 81 LMDGVPTTSNFSYYEGLVRGAWKMYQ----AGVLGHKMGErlIAEKSEKIIGETITALCELEEKDCVCEF----DLKDAL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 170 IENIDQLAQNNEEITGLPTGYQGLDKMTAGFQAEELIIIAARPAVGKTAFALNIAQNvGTKTDRAVAIFSLEMGAESLVN 249
Cdd:PRK06749 153 VDLYEELHQDAKEITGIETGYTSLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLH-AAKSGAAVGLFSLEMSSKQLLK 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 250 RMLCAEGSIEASHLRTGQ--LSEEEWSNLIVAMGSLSRANIYIDDTPGIKISEIRAKCRKLAQEKGNLG-LILIDYLQLI 326
Cdd:PRK06749 232 RMASCVGEVSGGRLKNPKhrFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKiLIIVDYLQLI 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 327 EG--SGRENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRE 404
Cdd:PRK06749 312 TGdpKHKGNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYREDYYDKE 391
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1055941211 405 SgedgettepQNDNVIEVIIEKNRSGARGTVELLFIKEYNKF 446
Cdd:PRK06749 392 T---------MQKEMTEIHVAKHRNGPVGSFKLRFLKEFGRF 424
|
|
| DnaB |
pfam00772 |
DnaB-like helicase N terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at ... |
9-111 |
8.80e-40 |
|
DnaB-like helicase N terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity.
Pssm-ID: 395624 [Multi-domain] Cd Length: 103 Bit Score: 138.52 E-value: 8.80e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 9 IPPQNIEAEQAVLGSVFLDAETIIDAMEYIEPKDFYRRGHQIIFETMIELNDRNEAIDVVTVKDRLEQGNLLEDAGGLSY 88
Cdd:pfam00772 1 VPPHNIEAEQAVLGALLLDPEAIDEVADILKPEDFYDPAHRLIFEAILDLYDKGEPIDPVTVAEELEKKGKLEDVGGIAY 80
|
90 100
....*....|....*....|...
gi 1055941211 89 LSELALAVPTAANVAYYAKIVEE 111
Cdd:pfam00772 81 LAELAANVPSAANIEYYARIVKE 103
|
|
| RecA-like_Gp4D_helicase |
cd19483 |
RecA-like domain of Escherichia coli bacteriophage T7 Gp4D helicase; This family includes the ... |
206-442 |
9.30e-14 |
|
RecA-like domain of Escherichia coli bacteriophage T7 Gp4D helicase; This family includes the RecA-like domain of the Gp4D fragment of the Gene4 helicase-primase (Gp4) from bacteriophage T7. Gp4D (residues 241-566) is the minimal fragment of the Gp4 that forms hexameric rings, it contains the helicase domain and the linker connecting the helicase and primase domains. Helicases are ring-shaped oligomeric enzymes that unwind DNA at the replication fork; they couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. This family belongs to the RecA-like NTPase superfamily which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410891 [Multi-domain] Cd Length: 231 Bit Score: 70.29 E-value: 9.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 206 IIIAARPAVGKTAFALNIAQNVGTKTDRAVAIFSLEMGAESLVNRMLCAE-GSIEASHLRTGQLSEEEWSNLIVAMGSLS 284
Cdd:cd19483 1 VTIGAGSGIGKSTIVRELAYHLITEHGEKVGIISLEESVEETAKGLAGKHlGKPEPLELPRDDITEEEEDDAFDNELGSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 285 RANIYiDDTPGIKISEIRAKCRKLAQeKGNLGLILIDYLQ-LIEG--SGRENRQQEVsdISRQLKKLAKELKVPVIALSQ 361
Cdd:cd19483 81 RFFLY-DHFGSLDWDNLKEKIRYMVK-VLGCKVIVLDHLTiLVSGldSSDERKELDE--IMTELAALVKELGVTIILVSH 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 362 LSR---GVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDdyydresgEDGEttEPQNDNVIEVIIEKNR-SGARGTVEL 437
Cdd:cd19483 157 LRRpggGKGHEEGGEVSESDLRGSSAIAQLSDYVIGLERN--------KQAD--DPVERNTTRVRVLKNRfTGETGIAGT 226
|
....*
gi 1055941211 438 LFIKE 442
Cdd:cd19483 227 LYYDE 231
|
|
| PRK07773 |
PRK07773 |
replicative DNA helicase; Validated |
375-450 |
3.95e-13 |
|
replicative DNA helicase; Validated
Pssm-ID: 236093 [Multi-domain] Cd Length: 886 Bit Score: 71.71 E-value: 3.95e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1055941211 375 VLSDIRESGSIEQDADIVAFLYRDDYYDRESGEDGETtepqndnviEVIIEKNRSGARGTVELLFIKEYNKFSSLS 450
Cdd:PRK07773 818 VANGIIVHNSIEQDADVVILLYRPDYYDRDDPRGGEA---------EFIVAKHRNGPTGTVTLAFQLHLSRFANLA 884
|
|
| PRK05973 |
PRK05973 |
replicative DNA helicase; Provisional |
204-380 |
1.42e-08 |
|
replicative DNA helicase; Provisional
Pssm-ID: 168322 [Multi-domain] Cd Length: 237 Bit Score: 55.43 E-value: 1.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 204 ELIIIAARPAVGKTAFALNIAQnVGTKTDRAVAIFSLEMGAESLVNRmLCAEGSIEASHlrtGQLSEEEWSNLIVAMgsl 283
Cdd:PRK05973 65 DLVLLGARPGHGKTLLGLELAV-EAMKSGRTGVFFTLEYTEQDVRDR-LRALGADRAQF---ADLFEFDTSDAICAD--- 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 284 sraniYIddtpgikiseirakCRKLAQ-EKGnlGLILIDYLQLIEgsgrENRQQ-EVSDISRQLKKLAKELKVPVIALSQ 361
Cdd:PRK05973 137 -----YI--------------IARLASaPRG--TLVVIDYLQLLD----QRREKpDLSVQVRALKSFARERGLIIVFISQ 191
|
170
....*....|....*....
gi 1055941211 362 LSRGVEQRQDKRPVLSDIR 380
Cdd:PRK05973 192 IDRSFDPSAKPLPDIRDVR 210
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
204-399 |
7.14e-08 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 53.75 E-value: 7.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 204 ELIIIAARPAVGKTAFALNIAQNV-------GTKTDRA-VAIFSLEMGAESLVNRM--LCAEGSIEASHLrtgqlseEEW 273
Cdd:COG3598 14 GVTLLAGPPGTGKSFLALQLAAAVaaggpwlGRRVPPGkVLYLAAEDDRGELRRRLkaLGADLGLPFADL-------DGR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 274 SNLIVAMGSLsraniyiDDTPGIkiseirakcRKLAQ--EKGNLGLILIDYLQLIEGsGRENRQQEVSDISRQLKKLAKE 351
Cdd:COG3598 87 LRLLSLAGDL-------DDTDDL---------EALERaiEEEGPDLVVIDPLARVFG-GDENDAEEMRAFLNPLDRLAER 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1055941211 352 LKVPVIALSQLSRGveqrQDKRPVLSDIRESGSIEQDADIVAFLYRDD 399
Cdd:COG3598 150 TGAAVLLVHHTGKG----GAGKDSGDRARGSSALRGAARSVLVLSREK 193
|
|
| AAA_25 |
pfam13481 |
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
202-365 |
3.14e-06 |
|
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins.
Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 47.76 E-value: 3.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 202 AEELIIIAARPAVGKTAFALNIAQNVGTKTD----------RAVAIFSLEMGAESLVNRMLCAEgsieashlrtGQLSEE 271
Cdd:pfam13481 32 AGGLGLLAGAPGTGKTTLALDLAAAVATGKPwlggprvpeqGKVLYVSAEGPADELRRRLRAAG----------ADLDLP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 272 EWSNLIVAMGSLsraNIYIDDTPGIKISEIRAKCRKLAQEKGNLGLILIDYLQLIEGSGrENRQQEVSDISRQLKKLAKE 351
Cdd:pfam13481 102 ARLLFLSLVESL---PLFFLDRGGPLLDADVDALEAALEEVEDPDLVVIDPLARALGGD-ENSNSDVGRLVKALDRLARR 177
|
170
....*....|....
gi 1055941211 352 LKVPVIALSQLSRG 365
Cdd:pfam13481 178 TGATVLLVHHVGKD 191
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
186-407 |
9.92e-06 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 46.45 E-value: 9.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 186 LPTGYQGLDKMTA-GFQAEELIIIAARPAVGKTAFALNIAQNvGTKTDRAVAIFSLEMGAESLVNRMLCAEGSIEAsHLR 264
Cdd:COG0467 2 VPTGIPGLDELLGgGLPRGSSTLLSGPPGTGKTTLALQFLAE-GLRRGEKGLYVSFEESPEQLLRRAESLGLDLEE-YIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 265 TGQLSeeewsnlIVAMGSLSRANIyiddtpgikISEIRAKCRKLAQEKGNlGLILIDYLQLIEGSGREnrQQEVSDISRQ 344
Cdd:COG0467 80 SGLLR-------IIDLSPEELGLD---------LEELLARLREAVEEFGA-KRVVIDSLSGLLLALPD--PERLREFLHR 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1055941211 345 LKKLAKELKVPVIALSQLsrgveqrqdkrPVLSDIRESGSIEQDADIVAFLyrddYYDRESGE 407
Cdd:COG0467 141 LLRYLKKRGVTTLLTSET-----------GGLEDEATEGGLSYLADGVILL----RYVELGGE 188
|
|
| 41 |
PHA02542 |
41 helicase; Provisional |
193-430 |
3.72e-05 |
|
41 helicase; Provisional
Pssm-ID: 222864 [Multi-domain] Cd Length: 473 Bit Score: 45.82 E-value: 3.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 193 LDKMT-AGFQAEELIIIAARPAVGKTAFALNIAQNVgTKTDRAVAIFSLEMGAEslvnrmLCAEgSIEASHLRTG----- 266
Cdd:PHA02542 179 LNKITkGGAERKTLNVLLAGVNVGKSLGLCSLAADY-LQQGYNVLYISMEMAEE------VIAK-RIDANLLDVSlddid 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 267 QLSEEEWSNLIVAMGSLSRANIYIDDTP--GIKISEIRAKCRKLAQEKG-NLGLILIDYLQlIEGSGR-----ENRQQEV 338
Cdd:PHA02542 251 DLSKAEYKAKMEKLRSKTQGKLIIKQYPtgGAHAGHFRALLNELKLKKNfKPDVIIVDYLG-ICASSRlrvssENSYTYV 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 339 SDISRQLKKLAKELKVPVIALSQLSRGVEQRQDkrPVLSDIRESGSIEQDADIVAFLYrddyydresgedgETTEPQNDN 418
Cdd:PHA02542 330 KAIAEELRGLAVEHDVVVWTAAQTTRSGWDSSD--VDMSDTAESAGLPATADFMLAVI-------------ETEELAQMG 394
|
250
....*....|..
gi 1055941211 419 VIEVIIEKNRSG 430
Cdd:PHA02542 395 QQLVKQLKSRYG 406
|
|
| RepA_RSF1010_like |
cd01125 |
Hexameric Replicative Helicase RepA of plasmid RSF1010 and related proteins; This family ... |
207-357 |
4.18e-04 |
|
Hexameric Replicative Helicase RepA of plasmid RSF1010 and related proteins; This family includes the homo-hexameric replicative helicase RepA encoded by plasmid RSF1010. RSF1010 is found in most Gram-negative bacteria and some Gram-positive bacteria . The RepA protein of Plasmid RSF1010 is a 5'-3' DNA helicase which can utilize ATP, dATP, GTP and dGTP (and CTP and dCTP to a lesser extent).
Pssm-ID: 410870 Cd Length: 238 Bit Score: 41.60 E-value: 4.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 207 IIAARPAVGKTAFALNIAQNVGTKTDRA---------VAIFSLEMGAESLVNRMLcaegSIEASHLRtgqlseeewsNLI 277
Cdd:cd01125 5 MLVGPPGSGKSFLALDLAVAVATGRDWLgerrvkqgrVVYLAAEDPRDGLRRRLK----AIGAHLGD----------EDA 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 278 VAMGSLSRANIYIDDTPGIKISEiraKCRKLAQEKGNLGLILIDYLQLIEGSGRENRQQEVSDISRQLKKLAKELKVPVI 357
Cdd:cd01125 71 ALAENLVIENLRGKPVSIDAEAP---ELERIIEELEGVRLIIIDTLARVLHGGDENDAADMGAFVAGLDRIARETGAAVL 147
|
|
| RecA-like_superfamily |
cd01120 |
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 ... |
292-386 |
6.97e-04 |
|
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410865 [Multi-domain] Cd Length: 119 Bit Score: 39.41 E-value: 6.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1055941211 292 DTPGIKISEIRAKCRKLAQ--EKGNLGLILIDYLQLIEGSGRENRQQEVSDISRQLKKLAKELKVPVIALSQLSRGVEqr 369
Cdd:cd01120 26 DEPVIFISFLDTILEAIEDliEEKKLDIIIIDSLSSLARASQGDRSSELLEDLAKLLRAARNTGITVIATIHSDKFDI-- 103
|
90
....*....|....*..
gi 1055941211 370 qDKRPVLSDIRESGSIE 386
Cdd:cd01120 104 -DRGGSSNDERLLKSLR 119
|
|
| |
