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Conserved domains on  [gi|1056596371|ref|WP_068027494|]
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c-type cytochrome [Rhodoplanes sp. Z2-YC6860]

Protein Classification

c-type cytochrome( domain architecture ID 10006741)

c-type cytochrome is an electron carrier protein that contains one or more heme groups; similar to Helicobacter pylori cytochrome c-553 that binds 1 heme and functions as the natural electron acceptor for a formate dehydrogenase

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
14-103 1.57e-21

Cytochrome c553 [Energy production and conversion];


:

Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 84.40  E-value: 1.57e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056596371  14 LIGALHAPLHAETLAERAAPCLACHGENGQS-ETPEVPSLGGQPAPYLLIQLYLFREKQRTQEIMNDQTKGFTDDDLRNF 92
Cdd:COG2863     5 LLAAPAAAGDAARGKAYAAACAACHGADGEGnPGGGAPRLAGQHAEYLVAQLKAFRSGARKNGVMPAIAKGLSDEDIKAL 84
                          90
                  ....*....|.
gi 1056596371  93 SDFVAKLPPPQ 103
Cdd:COG2863    85 AAYIASLKAPP 95
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
126-193 8.83e-15

Cytochrome c553 [Energy production and conversion];


:

Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 66.68  E-value: 8.83e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056596371 126 CNACHNLDLSG--KENVPRIAAQREDYLVKTMREYKNNTRHGyeATMAEVLNPVTDEQIVDLAYYIARFK 193
Cdd:COG2863    25 CAACHGADGEGnpGGGAPRLAGQHAEYLVAQLKAFRSGARKN--GVMPAIAKGLSDEDIKALAAYIASLK 92
 
Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
14-103 1.57e-21

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 84.40  E-value: 1.57e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056596371  14 LIGALHAPLHAETLAERAAPCLACHGENGQS-ETPEVPSLGGQPAPYLLIQLYLFREKQRTQEIMNDQTKGFTDDDLRNF 92
Cdd:COG2863     5 LLAAPAAAGDAARGKAYAAACAACHGADGEGnPGGGAPRLAGQHAEYLVAQLKAFRSGARKNGVMPAIAKGLSDEDIKAL 84
                          90
                  ....*....|.
gi 1056596371  93 SDFVAKLPPPQ 103
Cdd:COG2863    85 AAYIASLKAPP 95
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
126-193 8.83e-15

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 66.68  E-value: 8.83e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056596371 126 CNACHNLDLSG--KENVPRIAAQREDYLVKTMREYKNNTRHGyeATMAEVLNPVTDEQIVDLAYYIARFK 193
Cdd:COG2863    25 CAACHGADGEGnpGGGAPRLAGQHAEYLVAQLKAFRSGARKN--GVMPAIAKGLSDEDIKALAAYIASLK 92
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
34-99 2.45e-04

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 38.67  E-value: 2.45e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1056596371  34 CLACHGENGQSETPEVPSLGGQPAPYLLIQLYLFRE-KQRTQEIMNDQ-----------TKGFTDDDLRNFSDFVAKL 99
Cdd:pfam00034  11 CAACHGVNGEGAGAGGPDLAGLAARYPGDALGAIREnKHAIGGGGVDRaggppgtgmpaFDGLTDEEIADLVAYLLSL 88
 
Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
14-103 1.57e-21

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 84.40  E-value: 1.57e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056596371  14 LIGALHAPLHAETLAERAAPCLACHGENGQS-ETPEVPSLGGQPAPYLLIQLYLFREKQRTQEIMNDQTKGFTDDDLRNF 92
Cdd:COG2863     5 LLAAPAAAGDAARGKAYAAACAACHGADGEGnPGGGAPRLAGQHAEYLVAQLKAFRSGARKNGVMPAIAKGLSDEDIKAL 84
                          90
                  ....*....|.
gi 1056596371  93 SDFVAKLPPPQ 103
Cdd:COG2863    85 AAYIASLKAPP 95
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
126-193 8.83e-15

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 66.68  E-value: 8.83e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056596371 126 CNACHNLDLSG--KENVPRIAAQREDYLVKTMREYKNNTRHGyeATMAEVLNPVTDEQIVDLAYYIARFK 193
Cdd:COG2863    25 CAACHGADGEGnpGGGAPRLAGQHAEYLVAQLKAFRSGARKN--GVMPAIAKGLSDEDIKALAAYIASLK 92
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
34-99 2.45e-04

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 38.67  E-value: 2.45e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1056596371  34 CLACHGENGQSETPEVPSLGGQPAPYLLIQLYLFRE-KQRTQEIMNDQ-----------TKGFTDDDLRNFSDFVAKL 99
Cdd:pfam00034  11 CAACHGVNGEGAGAGGPDLAGLAARYPGDALGAIREnKHAIGGGGVDRaggppgtgmpaFDGLTDEEIADLVAYLLSL 88
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
113-190 4.80e-03

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 36.47  E-value: 4.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056596371 113 RIERAKVLITQHrCNACHNLDLSGKENVP------RIAAQREDYLVKTMreyknntRHGYEAT-MAEVLNPVTDEQIVDL 185
Cdd:COG2010    88 ALARGKALYEQN-CAACHGADGKGGLGAApnltddALYGGDPEALVETI-------LNGRPGGaMPAFGGQLSDEEIAAL 159

                  ....*
gi 1056596371 186 AYYIA 190
Cdd:COG2010   160 AAYLR 164
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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