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Conserved domains on  [gi|1056993095|ref|WP_068404729|]
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MULTISPECIES: hypothetical protein [Psychrobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ParD_like super family cl13358
ParD-like antitoxin of type II bacterial toxin-antitoxin system; ParD-like antitoxin is a ...
 5-61 2.08e-15

ParD-like antitoxin of type II bacterial toxin-antitoxin system; ParD-like antitoxin is a family of archaeal and bacterial proteins of a type II bacterial toxin-antitoxin system. Many of the cognate toxins for these molecules fall into family ParE-like_toxin, pfam15781. Gene-pairs are expressed from the same operon, the toxin of the pair being expressed first, eg, for UniProtKB:Q3AQ93 and UniProtKB:Q3AQ94.


The actual alignment was detected with superfamily member pfam11903:

Pssm-ID: 432177  Cd Length: 73  Bit Score: 63.56  E-value: 2.08e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1056993095  5 SIRLNKALVDKAYAISKAQHRTPPKQIEHWATIGQIMEDNPDLSYEFVRQLLIAQAE 61
Cdd:pfam11903  3 IVKISDDLHDQARRASAALSRSINAQAEHWARVGRAAEMNPDLSYRFICELLLSAAE 59
 
Name Accession Description Interval E-value
ParD_like pfam11903
ParD-like antitoxin of type II bacterial toxin-antitoxin system; ParD-like antitoxin is a ...
 5-61 2.08e-15

ParD-like antitoxin of type II bacterial toxin-antitoxin system; ParD-like antitoxin is a family of archaeal and bacterial proteins of a type II bacterial toxin-antitoxin system. Many of the cognate toxins for these molecules fall into family ParE-like_toxin, pfam15781. Gene-pairs are expressed from the same operon, the toxin of the pair being expressed first, eg, for UniProtKB:Q3AQ93 and UniProtKB:Q3AQ94.


Pssm-ID: 432177  Cd Length: 73  Bit Score: 63.56  E-value: 2.08e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1056993095  5 SIRLNKALVDKAYAISKAQHRTPPKQIEHWATIGQIMEDNPDLSYEFVRQLLIAQAE 61
Cdd:pfam11903  3 IVKISDDLHDQARRASAALSRSINAQAEHWARVGRAAEMNPDLSYRFICELLLSAAE 59
 
Name Accession Description Interval E-value
ParD_like pfam11903
ParD-like antitoxin of type II bacterial toxin-antitoxin system; ParD-like antitoxin is a ...
 5-61 2.08e-15

ParD-like antitoxin of type II bacterial toxin-antitoxin system; ParD-like antitoxin is a family of archaeal and bacterial proteins of a type II bacterial toxin-antitoxin system. Many of the cognate toxins for these molecules fall into family ParE-like_toxin, pfam15781. Gene-pairs are expressed from the same operon, the toxin of the pair being expressed first, eg, for UniProtKB:Q3AQ93 and UniProtKB:Q3AQ94.


Pssm-ID: 432177  Cd Length: 73  Bit Score: 63.56  E-value: 2.08e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1056993095  5 SIRLNKALVDKAYAISKAQHRTPPKQIEHWATIGQIMEDNPDLSYEFVRQLLIAQAE 61
Cdd:pfam11903  3 IVKISDDLHDQARRASAALSRSINAQAEHWARVGRAAEMNPDLSYRFICELLLSAAE 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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