|
Name |
Accession |
Description |
Interval |
E-value |
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
3-262 |
7.67e-62 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 196.93 E-value: 7.67e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 3 FKGTQDYVATDDLQMAVNSAIALQKPLLIKGEPGTGKTMLAEQLASALGARLIQWHIKSTTKAQQGLYEYDAVSRlrdsq 82
Cdd:COG0714 8 AEIGKVYVGQEELIELVLIALLAGGHLLLEGVPGVGKTTLAKALARALGLPFIRIQFTPDLLPSDILGTYIYDQQ----- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 83 lgvdrvhDISNYIVKGKLWeafeaeeRVILLIDEIDKADIEFPNDLLLEIDKMEFYVYEtqQRIVAKQRPIVLITSN--- 159
Cdd:COG0714 83 -------TGEFEFRPGPLF-------ANVLLADEINRAPPKTQSALLEAMEERQVTIPG--GTYKLPEPFLVIATQNpie 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 160 --NEKELPDAFLRRC-FFHYIDFPDAETMEKIVDVHY--------PDIKKDLLRE-----------------ALDVFFDV 211
Cdd:COG0714 147 qeGTYPLPEAQLDRFlLKLYIGYPDAEEEREILRRHTgrhlaevePVLSPEELLAlqelvrqvhvseavldyIVDLVRAT 226
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1057048633 212 RKVPGLKKKPSTSELIDWLKLLIADdiseSLLRERDPS--KAIPPLYGALLKN 262
Cdd:COG0714 227 REHPDLRKGPSPRASIALLRAARAL----ALLDGRDYVtpDDVKAVAGPVLKH 275
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
28-172 |
3.20e-11 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 59.61 E-value: 3.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 28 PLLIKGEPGTGKTMLAEQLASALGAR---LIQWHiKSTTKAQ-QGLYEYDAV-SRLRDSQLGVdrvhdisnyivkgklwe 102
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAAALSNRpvfYVQLT-RDTTEEDlFGRRNIDPGgASWVDGPLVR----------------- 62
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1057048633 103 afEAEERVILLIDEIDKADIEFPNDLLLEIDKMEFYVYETQQRIVAKQRPIVLITSNNE-----KELPDAFLRRC 172
Cdd:pfam07728 63 --AAREGEIAVLDEINRANPDVLNSLLSLLDERRLLLPDGGELVKAAPDGFRLIATMNPldrglNELSPALRSRF 135
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
27-180 |
9.69e-11 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 58.70 E-value: 9.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 27 KPLLIKGEPGTGKTMLAEQLAsalgarliqwhiKSTTKAQQGLYEYDAVSRLRDsqlgvDRVHDISNYIVKGKLWEAFEA 106
Cdd:cd00009 20 KNLLLYGPPGTGKTTLARAIA------------NELFRPGAPFLYLNASDLLEG-----LVVAELFGHFLVRLLFELAEK 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1057048633 107 EERVILLIDEIDKADIEFPNDLLLEIDKMEFYVYETQQRIVakqrpiVLITSNNEKELPDAFLRRCFFHYIDFP 180
Cdd:cd00009 83 AKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRV------IGATNRPLLGDLDRALYDRLDIRIVIP 150
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
27-183 |
6.29e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 56.61 E-value: 6.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 27 KPLLIKGEPGTGKTMLAEQLASALGARLIQWHIKSTTKAQQGLYEYDAVSRLRDSQLGVDRVHDIsnyivkGKLWEAFEA 106
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRL------RLALALARK 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1057048633 107 EERVILLIDEIDKADIEFPNDLLLEIDkmefyVYETQQRIVAKQRPIVLITSNNEKELPDAFLRRCFFHYIDFPDAE 183
Cdd:smart00382 77 LKPDVLILDEITSLLDAEQEALLLLLE-----ELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
30-205 |
4.52e-04 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 41.17 E-value: 4.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 30 LIKGEPGTGKTMLAEQLA-SALGARLIQWHIKsttkaqqgLYEYDAVSRlrdSQLGVDRVHDISNYIVKgklwEAFEAEE 108
Cdd:PRK05564 30 IIVGEDGIGKSLLAKEIAlKILGKSQQREYVD--------IIEFKPINK---KSIGVDDIRNIIEEVNK----KPYEGDK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 109 RVILLIDEiDKADIEFPNDLLLEIDKMEFYVYetqqrivakqrpIVLITSNNEKELpDAFLRRCFFHYIDFPDAETMEKI 188
Cdd:PRK05564 95 KVIIIYNS-EKMTEQAQNAFLKTIEEPPKGVF------------IILLCENLEQIL-DTIKSRCQIYKLNRLSKEEIEKF 160
|
170
....*....|....*..
gi 1057048633 189 VDVHYPDIKKDLLREAL 205
Cdd:PRK05564 161 ISYKYNDIKEEEKKSAI 177
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
3-262 |
7.67e-62 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 196.93 E-value: 7.67e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 3 FKGTQDYVATDDLQMAVNSAIALQKPLLIKGEPGTGKTMLAEQLASALGARLIQWHIKSTTKAQQGLYEYDAVSRlrdsq 82
Cdd:COG0714 8 AEIGKVYVGQEELIELVLIALLAGGHLLLEGVPGVGKTTLAKALARALGLPFIRIQFTPDLLPSDILGTYIYDQQ----- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 83 lgvdrvhDISNYIVKGKLWeafeaeeRVILLIDEIDKADIEFPNDLLLEIDKMEFYVYEtqQRIVAKQRPIVLITSN--- 159
Cdd:COG0714 83 -------TGEFEFRPGPLF-------ANVLLADEINRAPPKTQSALLEAMEERQVTIPG--GTYKLPEPFLVIATQNpie 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 160 --NEKELPDAFLRRC-FFHYIDFPDAETMEKIVDVHY--------PDIKKDLLRE-----------------ALDVFFDV 211
Cdd:COG0714 147 qeGTYPLPEAQLDRFlLKLYIGYPDAEEEREILRRHTgrhlaevePVLSPEELLAlqelvrqvhvseavldyIVDLVRAT 226
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1057048633 212 RKVPGLKKKPSTSELIDWLKLLIADdiseSLLRERDPS--KAIPPLYGALLKN 262
Cdd:COG0714 227 REHPDLRKGPSPRASIALLRAARAL----ALLDGRDYVtpDDVKAVAGPVLKH 275
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
29-199 |
2.35e-11 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 63.39 E-value: 2.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 29 LLIKGEPGTGKTMLAEQLASALGARLIQwhiksttkaqqglyeydavsrlrdsqlgVDRVHDISNYIvkG----KLWEAF 104
Cdd:COG0464 194 LLLYGPPGTGKTLLARALAGELGLPLIE----------------------------VDLSDLVSKYV--GetekNLREVF 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 105 ---EAEERVILLIDEIDK--ADIEFPND---------LLLEIDKMEFYVyetqqrivakqrpIVLITSNNEKELPDAFLR 170
Cdd:COG0464 244 dkaRGLAPCVLFIDEADAlaGKRGEVGDgvgrrvvntLLTEMEELRSDV-------------VVIAATNRPDLLDPALLR 310
|
170 180 190
....*....|....*....|....*....|
gi 1057048633 171 RCFFH-YIDFPDAETMEKIVDVHYPDIKKD 199
Cdd:COG0464 311 RFDEIiFFPLPDAEERLEIFRIHLRKRPLD 340
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
28-172 |
3.20e-11 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 59.61 E-value: 3.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 28 PLLIKGEPGTGKTMLAEQLASALGAR---LIQWHiKSTTKAQ-QGLYEYDAV-SRLRDSQLGVdrvhdisnyivkgklwe 102
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAAALSNRpvfYVQLT-RDTTEEDlFGRRNIDPGgASWVDGPLVR----------------- 62
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1057048633 103 afEAEERVILLIDEIDKADIEFPNDLLLEIDKMEFYVYETQQRIVAKQRPIVLITSNNE-----KELPDAFLRRC 172
Cdd:pfam07728 63 --AAREGEIAVLDEINRANPDVLNSLLSLLDERRLLLPDGGELVKAAPDGFRLIATMNPldrglNELSPALRSRF 135
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
27-180 |
9.69e-11 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 58.70 E-value: 9.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 27 KPLLIKGEPGTGKTMLAEQLAsalgarliqwhiKSTTKAQQGLYEYDAVSRLRDsqlgvDRVHDISNYIVKGKLWEAFEA 106
Cdd:cd00009 20 KNLLLYGPPGTGKTTLARAIA------------NELFRPGAPFLYLNASDLLEG-----LVVAELFGHFLVRLLFELAEK 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1057048633 107 EERVILLIDEIDKADIEFPNDLLLEIDKMEFYVYETQQRIVakqrpiVLITSNNEKELPDAFLRRCFFHYIDFP 180
Cdd:cd00009 83 AKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRV------IGATNRPLLGDLDRALYDRLDIRIVIP 150
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
27-183 |
6.29e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 56.61 E-value: 6.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 27 KPLLIKGEPGTGKTMLAEQLASALGARLIQWHIKSTTKAQQGLYEYDAVSRLRDSQLGVDRVHDIsnyivkGKLWEAFEA 106
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRL------RLALALARK 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1057048633 107 EERVILLIDEIDKADIEFPNDLLLEIDkmefyVYETQQRIVAKQRPIVLITSNNEKELPDAFLRRCFFHYIDFPDAE 183
Cdd:smart00382 77 LKPDVLILDEITSLLDAEQEALLLLLE-----ELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
29-180 |
1.11e-09 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 55.29 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 29 LLIKGEPGTGKTMLAEQLASALGARLIQWhiksttkaqqglyeydAVSRLRDSQLGV--DRVHDisnyivkgkLWEAFEA 106
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEI----------------SGSELVSKYVGEseKRLRE---------LFEAAKK 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 107 EERVILLIDEIDK-------ADIEFPND----LLLEIDKMEfyvyetqqrivAKQRPIVLITSNNEKELPDAFLRRCFFH 175
Cdd:pfam00004 56 LAPCVIFIDEIDAlagsrgsGGDSESRRvvnqLLTELDGFT-----------SSNSKVIVIAATNRPDKLDPALLGRFDR 124
|
....*
gi 1057048633 176 YIDFP 180
Cdd:pfam00004 125 IIEFP 129
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
23-171 |
9.36e-09 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 53.44 E-value: 9.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 23 IALQKPLLIKGEPGTGKTMLAEQLASALGARLIqwHIKSTTKAQQGLYEydavsrlrdsqlGVDRVHDIsnyivkgklwe 102
Cdd:cd19481 23 LGLPKGILLYGPPGTGKTLLAKALAGELGLPLI--VVKLSSLLSKYVGE------------SEKNLRKI----------- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 103 aFEAEER---VILLIDEIDKADIEFP------------NDLLLEIDkmefyvyetqqRIVAKQRPIVLITSNNEKELPDA 167
Cdd:cd19481 78 -FERARRlapCILFIDEIDAIGRKRDssgesgelrrvlNQLLTELD-----------GVNSRSKVLVIAATNRPDLLDPA 145
|
....
gi 1057048633 168 FLRR 171
Cdd:cd19481 146 LLRP 149
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
29-189 |
1.49e-06 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 48.34 E-value: 1.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 29 LLIKGEPGTGKTMLAEQLASALGARLIqwhiksTTKAQQGLYEY--DAVSRLRdsqlgvdrvhdisnyivkgKLWEaFEA 106
Cdd:COG1223 38 ILFYGPPGTGKTMLAEALAGELKLPLL------TVRLDSLIGSYlgETARNLR-------------------KLFD-FAR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 107 EERVILLIDEID--KADIEFPND----------LLLEIDKMefyvyetqqrivakQRPIVLITSNNEKELPDAFLRRCFF 174
Cdd:COG1223 92 RAPCVIFFDEFDaiAKDRGDQNDvgevkrvvnaLLQELDGL--------------PSGSVVIAATNHPELLDSALWRRFD 157
|
170
....*....|....*..
gi 1057048633 175 HYIDF--PDAETMEKIV 189
Cdd:COG1223 158 EVIEFplPDKEERKEIL 174
|
|
| RecA-like_ATAD1 |
cd19520 |
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ... |
26-171 |
9.68e-06 |
|
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase) is an ATPase that plays a critical role in regulating the surface expression of alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors, thereby regulating synaptic plasticity, learning and memory. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410928 [Multi-domain] Cd Length: 166 Bit Score: 44.72 E-value: 9.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 26 QKPLLIKGEPGTGKTMLAEQLASALGARLIQWHIKSTTKAQQGlyeydavsrlrDSQLGVDRVHDISNYIvkgklweafe 105
Cdd:cd19520 35 PKGVLLYGPPGCGKTMLAKATAKEAGARFINLQVSSLTDKWYG-----------ESQKLVAAVFSLASKL---------- 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1057048633 106 aeERVILLIDEID-------KADIEFPNDLlleidKMEFYVYETQQRIVAKQRPIVLITSNNEKELPDAFLRR 171
Cdd:cd19520 94 --QPSIIFIDEIDsflrqrsSTDHEATAMM-----KAEFMSLWDGLSTDGNCRVIVMGATNRPQDLDEAILRR 159
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
33-192 |
1.25e-05 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 45.77 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 33 GEPGTGKTMLAEQLASALGARLIqwhiksttkaqqglyeydavsRLRDSQLgvdrvhdISNYIVKG-----KLWEAFEAE 107
Cdd:COG1222 119 GPPGTGKTLLAKAVAGELGAPFI---------------------RVRGSEL-------VSKYIGEGarnvrEVFELAREK 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 108 ERVILLIDEID------KADIEFP------NDLLLEIDKMEfyvyetqqrivAKQRPIVLITSNNEKELPDAFLRRCFFH 175
Cdd:COG1222 171 APSIIFIDEIDaiaarrTDDGTSGevqrtvNQLLAELDGFE-----------SRGDVLIIAATNRPDLLDPALLRPGRFD 239
|
170 180
....*....|....*....|
gi 1057048633 176 ---YIDFPDAETMEKIVDVH 192
Cdd:COG1222 240 rviEVPLPDEEAREEILKIH 259
|
|
| AAA_2 |
pfam07724 |
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ... |
30-129 |
4.76e-05 |
|
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400187 [Multi-domain] Cd Length: 168 Bit Score: 42.95 E-value: 4.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 30 LIKGEPGTGKTMLAEQLASALGARLIQWHIKSTTKAQqglyEYDAVSRLRDSQLGVDRVHDisnyivKGKLWEAFEAEER 109
Cdd:pfam07724 7 LFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYM----EEHSVSRLIGAPPGYVGYEE------GGQLTEAVRRKPY 76
|
90 100
....*....|....*....|
gi 1057048633 110 VILLIDEIDKADIEFPNDLL 129
Cdd:pfam07724 77 SIVLIDEIEKAHPGVQNDLL 96
|
|
| RecA-like_ClpB_Hsp104-like |
cd19499 |
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ... |
29-171 |
8.93e-05 |
|
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410907 [Multi-domain] Cd Length: 178 Bit Score: 42.16 E-value: 8.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 29 LLIKGEPGTGKTMLAEQLASAL---GARLIQwhiksttkAQQGLY-EYDAVSRLRDSQLGvdrvhdISNYIVKGKLWEAF 104
Cdd:cd19499 44 FLFLGPTGVGKTELAKALAELLfgdEDNLIR--------IDMSEYmEKHSVSRLIGAPPG------YVGYTEGGQLTEAV 109
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1057048633 105 EAEERVILLIDEIDKADIEFPNDLLLEIDKMEFyvYETQQRIVAKQRPIVLITSNNekeLPDAFLRR 171
Cdd:cd19499 110 RRKPYSVVLLDEIEKAHPDVQNLLLQVLDDGRL--TDSHGRTVDFKNTIIIMTSNH---FRPEFLNR 171
|
|
| Fap7 |
COG1936 |
Broad-specificity NMP kinase [Nucleotide transport and metabolism]; |
29-113 |
9.64e-05 |
|
Broad-specificity NMP kinase [Nucleotide transport and metabolism];
Pssm-ID: 441539 [Multi-domain] Cd Length: 173 Bit Score: 42.11 E-value: 9.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 29 LLIKGEPGTGKTMLAEQLASALGARLIqwHIKSTTKaQQGLY-EYDAvsrLRDSQLgVD------RVHDIS--NYIVKGK 99
Cdd:COG1936 3 IAITGTPGTGKTTVAKLLAERLGLEVI--HLNDLVK-EEGLYtEVDE---ERDSLV-VDedalaeELEELKegDVIIEGH 75
|
90
....*....|....
gi 1057048633 100 LWEAFEAeERVILL 113
Cdd:COG1936 76 LAHLVDV-DRVIVL 88
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
30-205 |
4.52e-04 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 41.17 E-value: 4.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 30 LIKGEPGTGKTMLAEQLA-SALGARLIQWHIKsttkaqqgLYEYDAVSRlrdSQLGVDRVHDISNYIVKgklwEAFEAEE 108
Cdd:PRK05564 30 IIVGEDGIGKSLLAKEIAlKILGKSQQREYVD--------IIEFKPINK---KSIGVDDIRNIIEEVNK----KPYEGDK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 109 RVILLIDEiDKADIEFPNDLLLEIDKMEFYVYetqqrivakqrpIVLITSNNEKELpDAFLRRCFFHYIDFPDAETMEKI 188
Cdd:PRK05564 95 KVIIIYNS-EKMTEQAQNAFLKTIEEPPKGVF------------IILLCENLEQIL-DTIKSRCQIYKLNRLSKEEIEKF 160
|
170
....*....|....*..
gi 1057048633 189 VDVHYPDIKKDLLREAL 205
Cdd:PRK05564 161 ISYKYNDIKEEEKKSAI 177
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
27-171 |
4.91e-04 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 39.97 E-value: 4.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 27 KPLLIKGEPGTGKTMLAEQLASALGARLIQwhIKSttKAQQGLYEYDAVSRLRdsqlgvdrvhdisnyivkgKLWEAFEA 106
Cdd:cd19503 35 RGVLLHGPPGTGKTLLARAVANEAGANFLS--ISG--PSIVSKYLGESEKNLR-------------------EIFEEARS 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1057048633 107 EERVILLIDEIDKAdiefpndllleIDKMEFYVYETQQRIVA----------KQRPIVLITSNNEKELPDAFLRR 171
Cdd:cd19503 92 HAPSIIFIDEIDAL-----------APKREEDQREVERRVVAqlltlmdgmsSRGKVVVIAATNRPDAIDPALRR 155
|
|
| PRK11331 |
PRK11331 |
5-methylcytosine-specific restriction enzyme subunit McrB; Provisional |
23-122 |
1.59e-03 |
|
5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Pssm-ID: 183088 [Multi-domain] Cd Length: 459 Bit Score: 39.68 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 23 IALQKPLLIKGEPGTGKTMLAEQLASALGARLIQWHIKSTTKAQQGLYEyDAVSRLRDSQLGVDRVHDI-SNYIVKGKLw 101
Cdd:PRK11331 191 LTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE-DFIQGYRPNGVGFRRKDGIfYNFCQQAKE- 268
|
90 100
....*....|....*....|.
gi 1057048633 102 eafEAEERVILLIDEIDKADI 122
Cdd:PRK11331 269 ---QPEKKYVFIIDEINRANL 286
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
33-117 |
1.83e-03 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 39.30 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 33 GEPGTGKTMLAEQLASALGARliqwhiksttkaqqgLYEYDAVSrlrdsqlgvDRVHDISNYIVKGKlwEAFEAEERVIL 112
Cdd:PRK13342 43 GPPGTGKTTLARIIAGATDAP---------------FEALSAVT---------SGVKDLREVIEEAR--QRRSAGRRTIL 96
|
....*
gi 1057048633 113 LIDEI 117
Cdd:PRK13342 97 FIDEI 101
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
6-116 |
2.73e-03 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 38.62 E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 6 TQDYVATDDLQMAVNS---AIALQKPL-LIKGEPGTGKTMLAEQLASALGARLIQWHIKSTTKAQQGLYEY--DAVSRLR 79
Cdd:COG3267 19 PRFLFLSPSHREALARleyALAQGGGFvVLTGEVGTGKTTLLRRLLERLPDDVKVAYIPNPQLSPAELLRAiaDELGLEP 98
|
90 100 110
....*....|....*....|....*....|....*..
gi 1057048633 80 DSQLGVDRVHDISNYIVkgklwEAFEAEERVILLIDE 116
Cdd:COG3267 99 KGASKADLLRQLQEFLL-----ELAAAGRRVVLIIDE 130
|
|
| COG0645 |
COG0645 |
Predicted kinase, contains AAA domain [General function prediction only]; |
29-55 |
7.87e-03 |
|
Predicted kinase, contains AAA domain [General function prediction only];
Pssm-ID: 440410 [Multi-domain] Cd Length: 164 Bit Score: 36.43 E-value: 7.87e-03
10 20
....*....|....*....|....*..
gi 1057048633 29 LLIKGEPGTGKTMLAEQLASALGARLI 55
Cdd:COG0645 2 ILVCGLPGSGKSTLARALAERLGAVRL 28
|
|
| RecA-like_PEX1_r2 |
cd19526 |
second of two ATPase domains of Peroxisomal biogenesis factor 1 (PEX1); PEX1(also known as ... |
20-55 |
9.51e-03 |
|
second of two ATPase domains of Peroxisomal biogenesis factor 1 (PEX1); PEX1(also known as Peroxin-1)/PEX6 is a protein unfoldase; PEX1 and PEX6 form a heterohexameric Type-2 AAA-ATPase complex and are essential for peroxisome biogenesis as they are required for the import of folded proteins into the peroxisomal matrix. PEX-1 is required for stability of PEX5. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410934 [Multi-domain] Cd Length: 158 Bit Score: 35.87 E-value: 9.51e-03
10 20 30
....*....|....*....|....*....|....*.
gi 1057048633 20 NSAIALQKPLLIKGEPGTGKTMLAEQLASALGARLI 55
Cdd:cd19526 21 SSPLRLRSGILLYGPPGCGKTLLASAIASECGLNFI 56
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
26-130 |
9.60e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 35.40 E-value: 9.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057048633 26 QKPLLIKGEPGTGKTMLAEQLASALGARliqwhiKSTTKAQQGLYEYDAVSRLRD--SQLGVDRVHDISNYIVKGKLWEA 103
Cdd:pfam13401 5 AGILVLTGESGTGKTTLLRRLLEQLPEV------RDSVVFVDLPSGTSPKDLLRAllRALGLPLSGRLSKEELLAALQQL 78
|
90 100
....*....|....*....|....*...
gi 1057048633 104 FEAEER-VILLIDEIDKADIEFPNDLLL 130
Cdd:pfam13401 79 LLALAVaVVLIIDEAQHLSLEALEELRD 106
|
|
| |
