|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
60-328 |
1.33e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 1.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 60 AKMAVSDALQDLIARLAERLHSEADTVVAQAQARFQAQLQERtQALEQARHEAGSLMTQLQRCETALQAEREAGDAARSE 139
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELE-LELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 140 VARRTTELAQLEERISGLTVRVAEHDAHAKSLEHKHEHAREALEHYRASVKDQREQEQRRHAHQVQELQVALRQANEALT 219
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 220 AKNhDLMQLNRENGQWLERHTRLEQELTQTRQRADAQQRERDALRLAAAEYQAQQSRwthDVHALESVRAELAAARTDLV 299
Cdd:COG1196 398 LAA-QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE---LEEEEEALLELLAELLEEAA 473
|
250 260
....*....|....*....|....*....
gi 1057199821 300 EERQRREHAEADTLRATVRLSTLEQLLAQ 328
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
100-332 |
1.14e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 1.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 100 ERTQALEQARHEAGSLMTQLQRCETALQAEREAGDAARSEVARRTTELAQLEERISGLTVRVAEHDAHAKSLEHKHEHAR 179
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 180 EALEHYRASVKDQREQEQRRHAhQVQELQVALRQANEALTAKNHDLMQLNRENGQWLERHTRLEQELTQTRQRADAQQRE 259
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEE-KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1057199821 260 RDALRLAAAEYQAQQSRWTHDVHALES--VRAELAAARTDLVEERQRREHAEADTLRATVRLSTLEQLLAQLRPA 332
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKklEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA 476
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
100-343 |
5.71e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 5.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 100 ERTQALEQARHEAGSLMTQLQRCETALQAEREAGDAARSEVARRTTELAQLEERISGLTVRVAEHDAHAKSLEHKHEHAR 179
Cdd:TIGR02168 695 ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 180 EALehyrASVKDQREQEQRrhahQVQELQVALRQANEALTAKNHDLMQLNRENGQWLERHTRLEQELTQTRQRADAQQRE 259
Cdd:TIGR02168 775 EEL----AEAEAEIEELEA----QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 260 RDALRLAAAEYQAQQSRWTHDVHALESVRAELAAARTDLVEERQRREHaEADTLRATVR-----LSTLEQLLAQLRpaHS 334
Cdd:TIGR02168 847 IEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS-ELEELSEELReleskRSELRRELEELR--EK 923
|
....*....
gi 1057199821 335 VGELENAIA 343
Cdd:TIGR02168 924 LAQLELRLE 932
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
118-330 |
2.11e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 2.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 118 QLQRCETALQAEREAGDAARSEVARRTTELAQLEERISGLTVRVAEHDAHAKSLEHKHEHAREALEHYRASVKDQREQEQ 197
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 198 RRHAhQVQELQVALRQANEALTAKNHDLMQLNRENGQWLERHTRLEQELTQTRQRADAQQRERDALRLAAAEYQAQQSRW 277
Cdd:COG1196 320 ELEE-ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1057199821 278 THDVHALESVRAELAAARTDLVEERQRREHAEADTLRATVRLSTLEQLLAQLR 330
Cdd:COG1196 399 AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
143-330 |
1.65e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 1.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 143 RTTELAQLEERISGLTVRVAEHDAHAKSLEHKHEHAREALEHyrasvKDQREQEQRRHAHQVQELQVALRQANEALTakn 222
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ-----LRKELEELSRQISALRKDLARLEAEVEQLE--- 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 223 HDLMQLNRENGQWLERHTRLEQELTQTRQRADAQQRERDALRlaaAEYQAQQSRWTHDVHALESVRAELAAARTDLVEER 302
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE---AQIEQLKEELKALREALDELRAELTLLNEEAANLR 823
|
170 180
....*....|....*....|....*...
gi 1057199821 303 QRREHAEADTLRATVRLSTLEQLLAQLR 330
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELS 851
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
137-330 |
2.15e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 2.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 137 RSEVARRTTELAQLEERISGLTVRVAEHDAHAKSLEHKHEHAREALEHYRASVKDQR------EQEQRRHAHQVQELQVA 210
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRkdlarlEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 211 LRQANEALTAKNHDLMQLNRENGQWLERHTRLEQELTQTRQRADAQQRERDALRlaaAEYQAQQSRWTHDVHALESVRAE 290
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELR---AELTLLNEEAANLRERLESLERR 832
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1057199821 291 LAAARTDLVEERQRREHAEADTLRATVRLSTLEQLLAQLR 330
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872
|
|
| KfrA_N |
pfam11740 |
Plasmid replication region DNA-binding N-term; The broad host-range plasmid RK2 is able to ... |
7-119 |
4.12e-07 |
|
Plasmid replication region DNA-binding N-term; The broad host-range plasmid RK2 is able to replicate in and be inherited in a stable manner in diverse Gram-negative bacterial species. It encodes a number of co-ordinately regulated operons including a central control korF1 operon that represses the kfrA operon. The KfrA polypeptide is a site-specific DNA-binding protein whose operator overlaps the kfrA promoter. The N-terminus, containing an helix-turn-helix motif, is essential for function. Downstream from this family is an extended coiled-coil domain containing a heptad repeat segment which is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning.
Pssm-ID: 432038 [Multi-domain] Cd Length: 117 Bit Score: 48.06 E-value: 4.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 7 YKSDVQRARDRLRATGTHPSVDAVRVALGnTGSKTTIHRYLRELEEEEGQGVGAKM-----AVSDALQDLIARLAERLHS 81
Cdd:pfam11740 1 TKEQVFAAADALLAEGERPTVDAVRERLG-TGSPTTIHRHLKEWRAERAAASAVPAaalpeALQDAAQELLARLWQAALE 79
|
90 100 110
....*....|....*....|....*....|....*...
gi 1057199821 82 EADTVVAQAQARFQAQLQERTQALEQARHEAGSLMTQL 119
Cdd:pfam11740 80 EAEERLAAARAELQAERAALEAERAEAEQRAEALEAEL 117
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
63-314 |
1.33e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 63 AVSDALQDLIARLAERLHSEADTVVAQAQARFQAQLQERTQALEQARHEAGSLMTQLQRCETALQAE--------REAGD 134
Cdd:PTZ00121 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEdakrveiaRKAED 1162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 135 AARSEVARRTTELAQLEERISGLTVRVAEHDAHAKSLEhKHEHAREALEHYRAsvKDQREQEQRRHAHQVQELQVALRQA 214
Cdd:PTZ00121 1163 ARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDAR-KAEAARKAEEERKA--EEARKAEDAKKAEAVKKAEEAKKDA 1239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 215 NEALTAKNhdlmQLNRENGQWLERHTRLEQELTQTRQRADaQQRERDALRLAAAEYQAQQSRWTHDVHALESVRAELAAA 294
Cdd:PTZ00121 1240 EEAKKAEE----ERNNEEIRKFEEARMAHFARRQAAIKAE-EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314
|
250 260
....*....|....*....|.
gi 1057199821 295 R-TDLVEERQRREHAEADTLR 314
Cdd:PTZ00121 1315 KkADEAKKKAEEAKKKADAAK 1335
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
103-333 |
2.65e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 2.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 103 QALEQARHEAGSLMTQLQRCETALQAEREAGDAARSEVarrTTELAQLEERISGLTVRVAEHDAHAKSLEHKHEHAREAL 182
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA---EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 183 EHYRASVKDQREQEQrRHAHQVQELQVALRQANEALTAKNHDLMQLNRENGQWLERHTRLEQELTQTRQRADAQQRERDA 262
Cdd:TIGR02168 813 TLLNEEAANLRERLE-SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1057199821 263 LRLAAAEYQAQQSRWTHDVHALesvRAELAAARTDLVEERQRREHAEADTLRATVRLSTLEQLLAQLRPAH 333
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSEL---RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEAL 959
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
133-330 |
2.69e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 2.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 133 GDAARSEVARRTTELAQLEERISGLTVRVAEHDAHAKSLEHKHEHAREALEHyrasvkDQREQEQRRHAHQVQELQVALR 212
Cdd:COG4913 605 GFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEY------SWDEIDVASAEREIAELEAELE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 213 QaneaLTAKNHDLMQLNRENGQWLERHTRLEQELTQTRQRADAQQRERDALRLAAAEYQAQQSRWTHDVHALESVRAE-- 290
Cdd:COG4913 679 R----LDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEer 754
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1057199821 291 LAAARTDLVEERQRREhAEADTLRATVRLSTLEQLLAQLR 330
Cdd:COG4913 755 FAAALGDAVERELREN-LEERIDALRARLNRAEEELERAM 793
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
63-346 |
2.70e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 2.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 63 AVSDALQDLIARLAERLHSEADTV-VAQAQARFQAQLQERTQALEQARHEagsLMTQLQRCETALQAEREAGDAARSEVA 141
Cdd:COG1196 278 ELELELEEAQAEEYELLAELARLEqDIARLEERRRELEERLEELEEELAE---LEEELEELEEELEELEEELEEAEEELE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 142 RRTTELAQLEERISGLTVRVAEHDAHAKSLEHKHEHAREALEHYRASVKDQREQEQR------RHAHQVQELQVALRQAN 215
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAllerleRLEEELEELEEALAELE 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 216 EALTAKNHDLMQLNRENGQWLERHTRLEQELTQTRQRADAQQRERDALRLAAAEYQAQQSRwthDVHALESVRAELAAAR 295
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL---LLEAEADYEGFLEGVK 511
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1057199821 296 TDLVEERQRREHAEADTLRAT-VRLSTLEQLLAQLRPAHSVGELENAIAAGA 346
Cdd:COG1196 512 AALLLAGLRGLAGAVAVLIGVeAAYEAALEAALAAALQNIVVEDDEVAAAAI 563
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
123-330 |
1.36e-04 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 43.52 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 123 ETALQAEREAGDAARSEVARRTTELAQLEERISGLTVRVAEHDAHAKSLEHKHEHAREALEHYRASVKDQrEQEQRRHAH 202
Cdd:pfam19220 54 EALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRIELRDKTAQAEAL-ERQLAAETE 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 203 QVQELQVALRQANEALTAKNHDLMQLNRENGQWLERHTRLEQELTQTRQRADAQQRERDALRLAAAEYQAQQSRWTHDVH 282
Cdd:pfam19220 133 QNRALEEENKALREEAQAAEKALQRAEGELATARERLALLEQENRRLQALSEEQAAELAELTRRLAELETQLDATRARLR 212
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1057199821 283 ALESVRAELAAARTDLV---EERQRREHAEADTLR-----ATVRLSTLEQLLAQLR 330
Cdd:pfam19220 213 ALEGQLAAEQAERERAEaqlEEAVEAHRAERASLRmkleaLTARAAATEQLLAEAR 268
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
103-313 |
2.26e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 43.28 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 103 QALEQAR-----HEAGSLM----TQLQRCETALQAEREAGDAARSEVARRTTELAQleerisGLTVRVAEHDAHAKSLEH 173
Cdd:NF012221 1572 QRLEQEKqqqlaAISGSQSqlesTDQNALETNGQAQRDAILEESRAVTKELTTLAQ------GLDALDSQATYAGESGDQ 1645
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 174 KHEH--------AREALEHYRASVKDQREQEQRRHAHQVQELQVALRQAnealtaknhdlmqlnrENGQWLERHTRLEQE 245
Cdd:NF012221 1646 WRNPfagglldrVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDAVAKS----------------EAGVAQGEQNQANAE 1709
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 246 LTQTRQRADAQQRERDALRL----------AAAEYQAQQSRWTHDVHALES----VRAELAAARTDlVEERQRREHAEAD 311
Cdd:NF012221 1710 QDIDDAKADAEKRKDDALAKqneaqqaesdANAAANDAQSRGEQDASAAENkanqAQADAKGAKQD-ESDKPNRQGAAGS 1788
|
..
gi 1057199821 312 TL 313
Cdd:NF012221 1789 GL 1790
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
73-309 |
2.83e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 2.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 73 ARLAERLHSEADtvvAQAQARFQAQLQERTQALEQARHEAGSLMTQLQRCETALQAEREAGDAARSEVARRTTELAQLEE 152
Cdd:PTZ00121 1456 AKKAEEAKKKAE---EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE 1532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 153 RISGLTVRVAEHDAHAKSLEhKHEHAREALEHYRASVKdQREQEQRRHAHQVQELqvaLRQANEaltAKNHDLMQLNREN 232
Cdd:PTZ00121 1533 AKKADEAKKAEEKKKADELK-KAEELKKAEEKKKAEEA-KKAEEDKNMALRKAEE---AKKAEE---ARIEEVMKLYEEE 1604
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 233 GQWLERHTRLEQELTQTRQRADAQQRERDALRlAAAEYQAQQSRWTHDVHALE---SVRAELAAARTDlvEERQRREHAE 309
Cdd:PTZ00121 1605 KKMKAEEAKKAEEAKIKAEELKKAEEEKKKVE-QLKKKEAEEKKKAEELKKAEeenKIKAAEEAKKAE--EDKKKAEEAK 1681
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
118-311 |
1.46e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 118 QLQRCETALQAEREAGDAARSEVAR------RTTELAQLEER-----------ISGLTVRVAEHDAHAKSLEHKHEHARE 180
Cdd:pfam17380 317 KLEEAEKARQAEMDRQAAIYAEQERmamereRELERIRQEERkrelerirqeeIAMEISRMRELERLQMERQQKNERVRQ 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 181 ALEHYRaSVKDQREQEQRRHAHQVQELQVALRQANEAltaKNHDLMQLNRENGQWLERHTRLEQELTQTRQRADAQQRER 260
Cdd:pfam17380 397 ELEAAR-KVKILEEERQRKIQQQKVEMEQIRAEQEEA---RQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEER 472
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1057199821 261 DALRLAAAEYQAQQSRWTHDVHALesVRAELAAARTDLVEERQRREHAEAD 311
Cdd:pfam17380 473 KRKKLELEKEKRDRKRAEEQRRKI--LEKELEERKQAMIEEERKRKLLEKE 521
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
60-245 |
1.75e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 60 AKMAVSDALQDLIARLAERLHSEADTvvaQAQARFQAQLQERTQALEQARHEAGSLMTQLQRCETALQAEREAGDAARSE 139
Cdd:COG4913 638 AELDALQERREALQRLAEYSWDEIDV---ASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGE 714
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 140 VARRTTELAQLEERISGLTVRVAEHDAHAKSLEH-------KHEHAREALEHYRASVKDQREQEQRRHAHQVQELQVALR 212
Cdd:COG4913 715 IGRLEKELEQAEEELDELQDRLEAAEDLARLELRalleerfAAALGDAVERELRENLEERIDALRARLNRAEEELERAMR 794
|
170 180 190
....*....|....*....|....*....|...
gi 1057199821 213 QANEALTAKNHDLMQLNRENGQWLERHTRLEQE 245
Cdd:COG4913 795 AFNREWPAETADLDADLESLPEYLALLDRLEED 827
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
119-330 |
1.97e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.32 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 119 LQRCETALQAEREAGDAARSEVARRTTELAQLEERISGLTVRVAEHDAHAKSLEH----------------KHEHAREAL 182
Cdd:COG3096 422 LEKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKayelvckiageversqAWQTARELL 501
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 183 EHY--------RASVKDQREQEQRRHAHQVQELQVALRQANEALTAKNHDLMQLNRENGQWLERHTRLEQELTQTRQRAD 254
Cdd:COG3096 502 RRYrsqqalaqRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRS 581
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1057199821 255 AQQRERDALRLAAAEYQAQQSRWTHDVHALESVRAELAAARTDLVEERQRREHaeadTLRATVRLSTLEQLLAQLR 330
Cdd:COG3096 582 ELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQ----LLEREREATVERDELAARK 653
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
63-300 |
3.41e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.53 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 63 AVSDALQDLIARLAERLHSEADTVVAQAQARFQAQLQERTQALEQARHEAGSLMTQLQRCETALQAEREAGDAARSEVAR 142
Cdd:COG1196 586 AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGG 665
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 143 RTTELAQLEERISGLTVRVAEHDAHAKSLEHKHEHAREALEHYRASVKDQREQEQRRHAHQVQELQVALRQANEALTAKN 222
Cdd:COG1196 666 SRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEE 745
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 223 HDLMQLNRENGQWLERHTRLEQELTQTRqradaqqRERDAL----RLAAAEYQAQQSRWTHdvhaLESVRAELAAARTDL 298
Cdd:COG1196 746 ELLEEEALEELPEPPDLEELERELERLE-------REIEALgpvnLLAIEEYEELEERYDF----LSEQREDLEEARETL 814
|
..
gi 1057199821 299 VE 300
Cdd:COG1196 815 EE 816
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
146-311 |
3.57e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 38.37 E-value: 3.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 146 ELAQLEERISGLTVRVAEHDAHAKSLEHKHEHAREALEHYRASVKDQREqEQRRHAHQVQELQVALRQANEALTA--KNH 223
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEK-EIKRLELEIEEVEARIKKYEEQLGNvrNNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 224 DLMQLNRENGQWLERHTRLEQELTQTRQRADAQQRERDALRLAAAEYQAQQSrwthdvHALESVRAELAAARTDLVEERQ 303
Cdd:COG1579 90 EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELE------EKKAELDEELAELEAELEELEA 163
|
....*...
gi 1057199821 304 RREHAEAD 311
Cdd:COG1579 164 EREELAAK 171
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
203-344 |
4.50e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 38.84 E-value: 4.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 203 QVQELQVALRQANEALTA--KNHDLMQLNRENGQWLERHTRLEQELTQTRQRADAQQRERDALRLAAAEYQAQQSRWTHD 280
Cdd:COG3206 183 QLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQS 262
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1057199821 281 VhALESVRAELAAARTDLVEERQR--REHAEADTLRAtvRLSTLEQLLAQlRPAHSVGELENAIAA 344
Cdd:COG3206 263 P-VIQQLRAQLAELEAELAELSARytPNHPDVIALRA--QIAALRAQLQQ-EAQRILASLEAELEA 324
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
100-264 |
4.84e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 38.88 E-value: 4.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 100 ERTQALEQARHEAGSLMTQLQRCETALQAEREAGDAARSEVARRTTELAQLEERISGLTVRVAEHDAHAKSLEHKHEHAR 179
Cdd:TIGR02168 341 ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 180 EalehyrasvkDQREQEQRRHAHQVQELQVALRQANEALTAKNHDLMQLNRENGQWLERHTRLEQELTQTRQRADAQQRE 259
Cdd:TIGR02168 421 Q----------EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490
|
....*
gi 1057199821 260 RDALR 264
Cdd:TIGR02168 491 LDSLE 495
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
100-311 |
5.08e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 38.97 E-value: 5.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 100 ERTQALEQARHEAGSLMTQLQRCETALQAER----------------EAGDAARSEVARRTTELAQLEERISGLTVRVAE 163
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEarieevmklyeeekkmKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 164 HDAHAKSlehKHEHAREALEHY--RASVKDQREQEQRRHAHQVQELQVALRQANEALTAKNHDLMQLNRENGQWLERHTR 241
Cdd:PTZ00121 1641 KEAEEKK---KAEELKKAEEENkiKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK 1717
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 242 LEQ----------ELTQTRQRADAQQRERDALRLAAAEYQAQQSRWTHDVHALESVRAELAAARTDLVEERQRREHAEAD 311
Cdd:PTZ00121 1718 AEElkkaeeenkiKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD 1797
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
100-327 |
6.14e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 38.48 E-value: 6.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 100 ERTQALEQARHEagsLMTQLQRCETALQAEREAGDAARSEVAR---RTTELAQLEERISGLTV--------------RVA 162
Cdd:PRK02224 206 ERLNGLESELAE---LDEEIERYEEQREQARETRDEADEVLEEheeRREELETLEAEIEDLREtiaeterereelaeEVR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 163 EHDAHAKSLEHKHEHAR----------EALEHYRASVKDQREQEQRRhahqVQELQVALRQANEALTAKNHDLMQLNREN 232
Cdd:PRK02224 283 DLRERLEELEEERDDLLaeaglddadaEAVEARREELEDRDEELRDR----LEECRVAAQAHNEEAESLREDADDLEERA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 233 GQWLERHTRLEQELTQTRQRADAQQRERDALRLAAAEYQAQQSRWTHDVHALESVRAELAAARTDLveeRQRREHAEADT 312
Cdd:PRK02224 359 EELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDEL---REREAELEATL 435
|
250
....*....|....*
gi 1057199821 313 LRATVRLSTLEQLLA 327
Cdd:PRK02224 436 RTARERVEEAEALLE 450
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
100-330 |
6.18e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 38.74 E-value: 6.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 100 ERTQALEQARHEAGSLMTQLQRCETALQAEREAgdaarsevarrtteLAQLEErisgltvrVAEHDAHAKSLEHKHEHAR 179
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAELDALQERREA--------------LQRLAE--------YSWDEIDVASAEREIAELE 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 180 EALEHYRASVKDQREQEQrrhahQVQELQVALRQANEALTAKNHDLMQLNRENGQWLERHTRLEQELTQTRQRADAQQRE 259
Cdd:COG4913 675 AELERLDASSDDLAALEE-----QLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA 749
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1057199821 260 RDALRLAAA---EYQAQQSRWTHDvhALESVRAELAAARTDLVEERQR-REHAEADTLRATVRLSTLEQLLAQLR 330
Cdd:COG4913 750 LLEERFAAAlgdAVERELRENLEE--RIDALRARLNRAEEELERAMRAfNREWPAETADLDADLESLPEYLALLD 822
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
123-328 |
8.00e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 38.40 E-value: 8.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 123 ETALQAEREAGDAarSEVARRTTELAQLEERISGLTVRVAEHDaHAKSLEHKHEHAREALEhyRASVKDQREQEQRRHAH 202
Cdd:PRK04863 456 EELLSLEQKLSVA--QAAHSQFEQAYQLVRKIAGEVSRSEAWD-VARELLRRLREQRHLAE--QLQQLRMRLSELEQRLR 530
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 203 QVQELQVALRQANEALTAKNHDLMQLNRENGQWLERHTRLEQELTQTRQRADAQQRERDALRLAAAEYQAQQSRWthdvH 282
Cdd:PRK04863 531 QQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAW----L 606
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1057199821 283 ALESVRAELAAARTDLVEERQRREHAEADTLRATVRLSTLEQLLAQ 328
Cdd:PRK04863 607 AAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAA 652
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
73-339 |
9.81e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 38.10 E-value: 9.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 73 ARLAERLHSEADTVVAQAQARFQAQLQERTQAlEQARHEAGSLMTQLQRCETALQAEREAGDAARSEVARRTTELAQLEE 152
Cdd:PRK02224 508 EDRIERLEERREDLEELIAERRETIEEKRERA-EELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKE 586
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 153 RISGLTvRVAEHDAHAKSLEHKHEHAREALEHyRASVKDQREQEQRRHAHQVQELQVALRQANEAlTAKnhdlmqlnren 232
Cdd:PRK02224 587 RIESLE-RIRTLLAAIADAEDEIERLREKREA-LAELNDERRERLAEKRERKRELEAEFDEARIE-EAR----------- 652
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1057199821 233 gqwlERHTRLEQELTQTRQRADAQQRERDALrlaaaeyQAQQSRWTHDVHALESVRAElaaaRTDLVEERQRRE--HAEA 310
Cdd:PRK02224 653 ----EDKERAEEYLEQVEEKLDELREERDDL-------QAEIGAVENELEELEELRER----REALENRVEALEalYDEA 717
|
250 260
....*....|....*....|....*....
gi 1057199821 311 DTLRATVRlstleQLLAQLRpAHSVGELE 339
Cdd:PRK02224 718 EELESMYG-----DLRAELR-QRNVETLE 740
|
|
| |
