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Conserved domains on  [gi|1060749730|ref|WP_069138581|]
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MULTISPECIES: iron ABC transporter permease [Stenotrophomonas]

Protein Classification

FecCD family ABC transporter permease( domain architecture ID 10001816)

FecCD family ABC transporter permease such as iron ABC transporter permease, which is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

CATH:  1.10.3470.10
Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
SCOP:  4002900
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 29-342 4.35e-108

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440374  Cd Length: 306  Bit Score: 318.17  E-value: 4.35e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  29 SFAVGPLRLPPLEVMQALAvklglldPQAVSSRDLAVVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGVS 108
Cdd:COG0609     1 SLSLGAVPISLSDVLRALL-------GPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVS 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 109 QGAALGAVAAIVLGAaGAAGWLVPVAAFVGGALAIGLTYALARPGKGSGNATLLLVGIAMAAFCSALIGFLTYIASESEL 188
Cdd:COG0609    74 SGAALGAVLAIVLGG-GLSALGLPLAAFLGALLAALLVYLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 189 QSLVFWQMGSLARANWADVVAVVPLFAIGVFALQRLATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAG 268
Cdd:COG0609   153 RSIVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAG 232

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1060749730 269 SISFVGLVVPHVARLLVGPGHRWLLPLSGLLGAVLIVVADTAARTLDPPAEIPLGLFSAALGAPFFLWLVLQQR 342
Cdd:COG0609   233 PIGFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 29-342 4.35e-108

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 318.17  E-value: 4.35e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  29 SFAVGPLRLPPLEVMQALAvklglldPQAVSSRDLAVVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGVS 108
Cdd:COG0609     1 SLSLGAVPISLSDVLRALL-------GPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVS 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 109 QGAALGAVAAIVLGAaGAAGWLVPVAAFVGGALAIGLTYALARPGKGSGNATLLLVGIAMAAFCSALIGFLTYIASESEL 188
Cdd:COG0609    74 SGAALGAVLAIVLGG-GLSALGLPLAAFLGALLAALLVYLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 189 QSLVFWQMGSLARANWADVVAVVPLFAIGVFALQRLATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAG 268
Cdd:COG0609   153 RSIVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAG 232

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1060749730 269 SISFVGLVVPHVARLLVGPGHRWLLPLSGLLGAVLIVVADTAARTLDPPAEIPLGLFSAALGAPFFLWLVLQQR 342
Cdd:COG0609   233 PIGFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 29-340 1.91e-84

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 257.84  E-value: 1.91e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  29 SFAVGPLRLPPLEVMQALAVKLglldpqavSSRDLAVVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGVS 108
Cdd:pfam01032   9 SLFIGAVKISPSDVFSALLGGD--------DSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 109 QGAALGAVAAIVLGAAgAAGWLVPVAAFVGGALAIGLTYALARPGKGSGNATLLLVGIAMAAFCSALIGFLTYIASESEL 188
Cdd:pfam01032  81 SGAALGAVLAILLGGS-LSLFALPLAAFIGALLAALLVYFLSRGRGGASPLRLILAGIAVSALLSALTSLLLLLLNPEAL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 189 QSLVFWQMGSLARANWADVVAVVPLFAIGVFALQRLATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAG 268
Cdd:pfam01032 160 QSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVG 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1060749730 269 SISFVGLVVPHVARLLVGPGHRWLLPLSGLLGAVLIVVADTAARTLDPPAEIPLGLFSAALGAPFFLWLVLQ 340
Cdd:pfam01032 240 PIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
btuC PRK09535
cobalamin ABC transporter permease BtuC;
56-337 3.22e-72

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 228.48  E-value: 3.22e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  56 QAVSSRDLAVVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGVSQGAALGAVAAIVLGAAGAAGwlVPVAA 135
Cdd:PRK09535   81 FAVPETAQTIVLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGAVAAIVLPLAVPFG--LQAAA 158

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 136 FVGGALAIGLTYALARPGKGSGNATLLLVGIAMAAFCSALIGFLTYIASESeLQSLVFWQMGSLARANWADVVAVVPLFA 215
Cdd:PRK09535  159 FAGALVAAFGVYAIATENGRTPVATLLLAGVAVQTFLGAVISYLLLHSGES-LRRAVYWLMGHLHGSTWSDVEVALPVVV 237

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 216 IGVFALQRLATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAGSISFVGLVVPHVARLLVGPGHRWLLPL 295
Cdd:PRK09535  238 VGFVVLLAYARDLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPT 317

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1060749730 296 SGLLGAVLIVVADTAARTldPPAEIPLGLFSAALGAPFFLWL 337
Cdd:PRK09535  318 SALAGASFLVATDTVARS--GPAEVPVGIVTAALGAPFFLYL 357
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 31-345 1.33e-58

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 191.99  E-value: 1.33e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  31 AVGPLRLPPLEVMQALAVKLGL---LDPQAVSSRDLAVVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGV 107
Cdd:TIGR03869  11 TIGPADISVGEVWRSVAAHLGRgegFPGVALSRLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 108 SQGAALGAVAAIVLGAAgaagWLVPVAAFVGGALAIGLTYALARPGKGSGNATLLLVGIAMAAFCSALIGFLTYI-ASES 186
Cdd:TIGR03869  91 SSGASLGAVAVLVLGVA----VLLPVAAFAGALLALAATLGLARTLGTLTPTRTILAGLAVSQLCAAVTSFVIFWsATGD 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 187 ELQSLVFWQMGSLARANWADVVAVVPLFAIGVFALQRLATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAF 266
Cdd:TIGR03869 167 SYREILSWLMGSLAGATWGSVAIAGGALLVVGLVLLASGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVSV 246

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1060749730 267 AGSISFVGLVVPHVARLLVGPGHRWLLPLSGLLGAVLIVVADTAARTLDPPAEIPLGLFSAALGAPFFLWLVLQQRRKA 345
Cdd:TIGR03869 247 SGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAVLLYRSRSGA 325
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 75-338 7.64e-50

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 167.35  E-value: 7.64e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  75 LLGAMVGASLAMAGASLQGLFGNPLADPGIVGVSQGAALGAVAAIVLGAAGAAGWLVPVAAfvGGALAIGLTYALARPGK 154
Cdd:cd06550     2 LAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAF--AGALAIALLVLLLASRG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 155 GSGNATLLLVGIAMAAFCSALIGFLTYIASESeLQSLVFWQMGSLARANWADVVAVVPLFAIGVFALQRLATPLDMLALG 234
Cdd:cd06550    80 GLSPSKLILIGIVLSAFFSAGVILISLLSDDS-LQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFD 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 235 ERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAGSISFVGLVVPHVARLLVGPGHRWLLPLSGLLGAVLIVVADTAARTL 314
Cdd:cd06550   159 EDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTL 238

                         250       260
                  ....*....|....*....|....
gi 1060749730 315 dPPAEIPLGLFSAALGAPFFLWLV 338
Cdd:cd06550   239 -LPSELPVGPVTALLGAPYFLYLL 261
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 29-342 4.35e-108

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 318.17  E-value: 4.35e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  29 SFAVGPLRLPPLEVMQALAvklglldPQAVSSRDLAVVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGVS 108
Cdd:COG0609     1 SLSLGAVPISLSDVLRALL-------GPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVS 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 109 QGAALGAVAAIVLGAaGAAGWLVPVAAFVGGALAIGLTYALARPGKGSGNATLLLVGIAMAAFCSALIGFLTYIASESEL 188
Cdd:COG0609    74 SGAALGAVLAIVLGG-GLSALGLPLAAFLGALLAALLVYLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 189 QSLVFWQMGSLARANWADVVAVVPLFAIGVFALQRLATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAG 268
Cdd:COG0609   153 RSIVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAG 232

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1060749730 269 SISFVGLVVPHVARLLVGPGHRWLLPLSGLLGAVLIVVADTAARTLDPPAEIPLGLFSAALGAPFFLWLVLQQR 342
Cdd:COG0609   233 PIGFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 29-340 1.91e-84

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 257.84  E-value: 1.91e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  29 SFAVGPLRLPPLEVMQALAVKLglldpqavSSRDLAVVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGVS 108
Cdd:pfam01032   9 SLFIGAVKISPSDVFSALLGGD--------DSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 109 QGAALGAVAAIVLGAAgAAGWLVPVAAFVGGALAIGLTYALARPGKGSGNATLLLVGIAMAAFCSALIGFLTYIASESEL 188
Cdd:pfam01032  81 SGAALGAVLAILLGGS-LSLFALPLAAFIGALLAALLVYFLSRGRGGASPLRLILAGIAVSALLSALTSLLLLLLNPEAL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 189 QSLVFWQMGSLARANWADVVAVVPLFAIGVFALQRLATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAG 268
Cdd:pfam01032 160 QSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVG 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1060749730 269 SISFVGLVVPHVARLLVGPGHRWLLPLSGLLGAVLIVVADTAARTLDPPAEIPLGLFSAALGAPFFLWLVLQ 340
Cdd:pfam01032 240 PIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 65-343 1.40e-72

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 228.20  E-value: 1.40e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  65 VVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGVSQGAALGAVAAIVLGAAGAAGWLVPVAAFVGGALAIG 144
Cdd:COG4139    50 FVWQLRLPRTLAAVLVGASLAVSGAVMQALFENPLAEPGLLGISNGAGVGLVLVVLLGGGLLPPWLLSLAAIAGALLVTL 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 145 LTYALARpgKGSGNATLLLVGIAMAAFCSALIGFLTYIASESELQSLVFWQMGSLARANWADVVAVVPLFAIgVFALQRL 224
Cdd:COG4139   130 LLLAFAR--RRLSNARLLLIGVALGIICSAIMTWAVYFSSSLDLRQLMYWMMGSFGGVDWRQLWLLLALLPV-LLWLCLQ 206

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 225 ATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAGSISFVGLVVPHVARLLVGPGHRWLLPLSGLLGAVLI 304
Cdd:COG4139   207 GKPLNLLLLGENQARQLGLSVHRWRNLLVLATGLLVGVSVALAGPIGFVGLVVPHLLRLLGTTDHRFLLPACALAGAALL 286

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1060749730 305 VVADTAARTLDPPAEIPLGLFSAALGAPFFLWLVLQQRR 343
Cdd:COG4139   287 LLADIIARLALSSAELPIGVVTATLGAPVFIWLLLRRRK 325
btuC PRK09535
cobalamin ABC transporter permease BtuC;
56-337 3.22e-72

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 228.48  E-value: 3.22e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  56 QAVSSRDLAVVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGVSQGAALGAVAAIVLGAAGAAGwlVPVAA 135
Cdd:PRK09535   81 FAVPETAQTIVLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGAVAAIVLPLAVPFG--LQAAA 158

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 136 FVGGALAIGLTYALARPGKGSGNATLLLVGIAMAAFCSALIGFLTYIASESeLQSLVFWQMGSLARANWADVVAVVPLFA 215
Cdd:PRK09535  159 FAGALVAAFGVYAIATENGRTPVATLLLAGVAVQTFLGAVISYLLLHSGES-LRRAVYWLMGHLHGSTWSDVEVALPVVV 237

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 216 IGVFALQRLATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAGSISFVGLVVPHVARLLVGPGHRWLLPL 295
Cdd:PRK09535  238 VGFVVLLAYARDLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPT 317

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1060749730 296 SGLLGAVLIVVADTAARTldPPAEIPLGLFSAALGAPFFLWL 337
Cdd:PRK09535  318 SALAGASFLVATDTVARS--GPAEVPVGIVTAALGAPFFLYL 357
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 65-343 3.80e-72

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 227.15  E-value: 3.80e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  65 VVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGVSQGAALGAVAAIVLGAAGAAGWLVPVAAFVGGALAIG 144
Cdd:PRK03784   53 FVWQLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGLLPPWALSLCAIAGALLITL 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 145 LTYALARPGKGSgNATLLLVGIAMAAFCSALIGFLTYIASESELQSLVFWQMGSLARANWADVVAVVPLFAIgVFALQRL 224
Cdd:PRK03784  133 ILLRFARRHRLS-TSRLLLAGVALGIICSALMTWAVYFSTSLDLRQLMYWMMGGFGGVDWRQSWLMLALLPV-LIWLCCQ 210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 225 ATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAGSISFVGLVVPHVARLLVGPGHRWLLPLSGLLGAVLI 304
Cdd:PRK03784  211 GRPLNMLALGEISARQLGLPLWFWRNLLVLATGWLVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASLL 290

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1060749730 305 VVADTAARTLDPPAEIPLGLFSAALGAPFFLWLVLQQRR 343
Cdd:PRK03784  291 LLADIVARLALASAELPIGVVTATLGAPVFIWLLLRSHR 329
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
 29-344 1.68e-63

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443810  Cd Length: 344  Bit Score: 205.35  E-value: 1.68e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  29 SFAVGPLRLPPLEVMQALavkLGLLDPQAVssrdlAVVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGVS 108
Cdd:COG4779    40 ALTLGDYPLSPGDVLRAL---LGEGDPGAS-----FVVLELRLPRALAALLVGAALGLSGAIFQSLTRNPLASPDIIGIT 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 109 QGAALGAVAAIVLGaaGAAGWLVPVAAFVGGALAIGLTYALARPGKGSGnATLLLVGIAMAAFCSALIGFLTYIASESEL 188
Cdd:COG4779   112 AGASAGAVAAIVVL--GGSGLAVALGALAGGLATALLVYLLAWRGGVSG-YRLILVGIGVSAMLTAVNSYLLTRADLEDA 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 189 QSLVFWQMGSLARANWADVVAVVPLFAIGVFALQRLATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAG 268
Cdd:COG4779   189 QSAAVWLTGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLLELGDDTAAALGVRVERTRLLLLLVAVALAAVATAAAG 268

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1060749730 269 SISFVGLVVPHVARLLVGPGhRWLLPLSGLLGAVLIVVADTAARTLDPPAEIPLGLFSAALGAPFFLWLVLQQRRK 344
Cdd:COG4779   269 PIAFVALAAPQIARRLTRSP-GPPLLPSALVGALLLLAADLVAQHLLAPVQLPVGVVTGALGGPYLLWLLIRENRR 343
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 31-345 1.33e-58

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 191.99  E-value: 1.33e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  31 AVGPLRLPPLEVMQALAVKLGL---LDPQAVSSRDLAVVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGV 107
Cdd:TIGR03869  11 TIGPADISVGEVWRSVAAHLGRgegFPGVALSRLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 108 SQGAALGAVAAIVLGAAgaagWLVPVAAFVGGALAIGLTYALARPGKGSGNATLLLVGIAMAAFCSALIGFLTYI-ASES 186
Cdd:TIGR03869  91 SSGASLGAVAVLVLGVA----VLLPVAAFAGALLALAATLGLARTLGTLTPTRTILAGLAVSQLCAAVTSFVIFWsATGD 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 187 ELQSLVFWQMGSLARANWADVVAVVPLFAIGVFALQRLATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAF 266
Cdd:TIGR03869 167 SYREILSWLMGSLAGATWGSVAIAGGALLVVGLVLLASGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVSV 246

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1060749730 267 AGSISFVGLVVPHVARLLVGPGHRWLLPLSGLLGAVLIVVADTAARTLDPPAEIPLGLFSAALGAPFFLWLVLQQRRKA 345
Cdd:TIGR03869 247 SGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAVLLYRSRSGA 325
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
45-344 1.25e-55

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 192.36  E-value: 1.25e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  45 ALAVKLGLLDPQAVSSRDLAVVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGVSQGAALGAVAAIVLGAA 124
Cdd:PRK10577  372 ALSFGRDAHGWNWLSGQLLDALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFLVPG 451

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 125 GAAGWLvPVAAFVGGALAIGLTYALARPGKGSGNAtLLLVGIAMAAFCSALIGFLtyIASESE-LQSLVFWQMGSLARAN 203
Cdd:PRK10577  452 AGFGWL-LAAALLGALAALALILLLARRGGFAPER-LLLTGIALSALFTALIQLL--LASGDPrAAQLLTWLSGSTYGVT 527

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 204 WADVVAVVPLFAIGVFALQRLATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAGSISFVGLVVPHVARL 283
Cdd:PRK10577  528 WAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALLTAAATATVGPLSFVGLMAPHLARM 607

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1060749730 284 LVGPGHRWLLPLSGLLGAVLIVVADTAARTLDPPAEIPLGLFSAALGAPFFLWLVLQQRRK 344
Cdd:PRK10577  608 LGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRRSRRR 668
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
65-342 5.07e-52

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 174.85  E-value: 5.07e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  65 VVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGVSQGAALGAVAAIVLGAAGAAGWLvPVAAFVGGALAIG 144
Cdd:PRK09777   46 VLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNPLASPDILGVNHAASLASVGALLLFPSLPVMWL-PLLAFIGGMAGLI 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 145 LTYALARPgkgSGNATLLLVGIAMAAFCSALIGFLTyIASESELQSLVFWQMGSLARANWADVVAVVPLFAIGVFALQRL 224
Cdd:PRK09777  125 LLKMLAGT---HQPMKLALTGVALSALWASLTDYLM-LSRPQDINNALLWLTGSLWGRDWSFVKVALPWLILLLPLSLSF 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 225 ATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAGSISFVGLVVPHVARLLVGPGHRWLLPLSGLLGAVLI 304
Cdd:PRK09777  201 CRDLDLLALGDARATTLGVSVPHTQFWALLLAVALTATGVAACGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALLL 280

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1060749730 305 VVADTAARTLDPPAEIPLGLFSAALGAPFFLWLVLQQR 342
Cdd:PRK09777  281 LLADLLARIIHPPLELPAGVLTAIIGAPWFFWLLVRMR 318
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
30-338 1.56e-50

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 171.03  E-value: 1.56e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  30 FAVGPLRLPPLEVMQALAvklglldPQAVSSRDLAVVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGVSQ 109
Cdd:PRK11228   18 FCYSAIPISAADALNALL-------PGHTPTLPEALVQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINS 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 110 GAALGAVAAIVLGAAGAAGWLVPVAAFVGGALAIGLTYALARPGK-GSGNATLLLVGIAMAAFCSALIGfLTYIASESEL 188
Cdd:PRK11228   91 GAALAMALTSALSPTPFAGYSLAFIAACGGGLSWLLVMTAGGGWRhTHDRNRLILAGIALSALCMALTR-ITLLLAEDHA 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 189 QSLVFWQMGSLARANWADVVAVVPLFAIGVFALQRLATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAG 268
Cdd:PRK11228  170 YGIFYWLAGGVSHARWQEVWQLLPFVVTAVPVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVGACVSVAG 249

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 269 SISFVGLVVPHVARLLVGPGHRWLLPLSGLLGAVLIVVADTAARTLDPPAEIPLGLFSAALGAPFFLWLV 338
Cdd:PRK11228  250 PVAFIGLLVPHLARFWIGYDQRNVLPMSMLLGATLMLLADLLARALAFPGELPAGAVLALIGAPCFVWLA 319
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 75-338 7.64e-50

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 167.35  E-value: 7.64e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  75 LLGAMVGASLAMAGASLQGLFGNPLADPGIVGVSQGAALGAVAAIVLGAAGAAGWLVPVAAfvGGALAIGLTYALARPGK 154
Cdd:cd06550     2 LAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAF--AGALAIALLVLLLASRG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 155 GSGNATLLLVGIAMAAFCSALIGFLTYIASESeLQSLVFWQMGSLARANWADVVAVVPLFAIGVFALQRLATPLDMLALG 234
Cdd:cd06550    80 GLSPSKLILIGIVLSAFFSAGVILISLLSDDS-LQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFD 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 235 ERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAGSISFVGLVVPHVARLLVGPGHRWLLPLSGLLGAVLIVVADTAARTL 314
Cdd:cd06550   159 EDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTL 238

                         250       260
                  ....*....|....*....|....
gi 1060749730 315 dPPAEIPLGLFSAALGAPFFLWLV 338
Cdd:cd06550   239 -LPSELPVGPVTALLGAPYFLYLL 261
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
50-347 3.14e-45

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 163.86  E-value: 3.14e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  50 LGLLDPQAVSSRDLAVVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGVSQGAALGAVAAIVLGAAGAAGW 129
Cdd:PRK10577   42 LQALWGPDADDLEQLLLHYSRLPRLAIALLVGAALGLAGALLQQVLRNPLASPTTLGVAAGAQLALVLATLFAPALLALA 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 130 LVPVAaFVGGALAIGLTYALARpGKGSGNATLLLVGIAMAAFCSALIGFLTyIASESELQSLVFWQMGSLARANWADVVA 209
Cdd:PRK10577  122 SQLAA-FAGGLLAAALVFALAG-GKRLSPLRLVLAGMVVSLYLGALTTLLL-LFNEQYLQGLFLWGAGSLAQNDWSGVQR 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 210 VVPLFAIGVFALQRLATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAGSISFVGLVVPHVARLLVGPGH 289
Cdd:PRK10577  199 LLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAALALAVLLSAAVVSAVGPIGFIGLAAPNLARLLGARRL 278

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 290 RWLLPLSGLLGAVLIVVADTAARTLDPPA--EIPLGLFSAALGAPFFLWLVLQQRRKAVP 347
Cdd:PRK10577  279 RARLPLSPLIGALLLLLTDQLVRLLAGVGgeLLPTGAVTALIGAPLLLWLLPRLRSAQSA 338
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
64-345 4.22e-36

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 133.30  E-value: 4.22e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  64 AVVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGVSQGAALGAVAAIVLGAAGAAGwlVPVAAFVGGALAI 143
Cdd:PRK10440   53 MVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLFGQDLTA--IALAAMAGGIVTS 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 144 GLTYALARPgKGSGNATLLLVGIAMAAFCSALIGFLTYIASESELQSLVFWQMGSLARANWADVVAVVPLFAIGVFALQR 223
Cdd:PRK10440  131 LLVWLLAWR-NGIDTFRLIIIGIGVRAMLVAFNTWLLLKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAAL 209

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 224 LATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAGSISFVGLVVPHVARLLVGPGhRWLLPLSGLLGAVL 303
Cdd:PRK10440  210 LVRRMRLLEMGDDTACALGVSVERSRLLLMLVAVVLTAAATALAGPISFIALVAPHIARRLSGTA-RWGLTQAALCGALL 288

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1060749730 304 IVVADTAARTLDPPAEIPLGLFSAALGAPFFLWLVLQQRRKA 345
Cdd:PRK10440  289 LLAADLCAQQLFMPYQLPVGVVTVSLGGIYLIVLLIQESRKK 330
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
59-343 5.78e-35

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 130.21  E-value: 5.78e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730  59 SSRDLAVVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGVSQGAALgavaAIVLGAA--GAAGWLVPVAAF 136
Cdd:PRK10441   49 QSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASF----AIVLGAAlfGYSSAQEQLAMA 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 137 VGGALAIGLTYAL--ARPGKGSGNATLLLVGIAMAAFCSALIGFLTYIASESELQsLVFWQMGSLARANWADVVAVVPLF 214
Cdd:PRK10441  125 FAGALVASLIVAFtgSQGGGQLSPVRLTLAGVALAAVLEGLTSGIALLNPDVYDQ-LRFWQAGSLDIRNLHTLKVVLIPV 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060749730 215 AIGVFALQRLATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAGSISFVGLVVPHVARLLVGPGHRWLLP 294
Cdd:PRK10441  204 LIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLP 283

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1060749730 295 LSGLLGAVLIVVADTAARTLdPPAEIPLGLFSAALGAPFFLWLVLQQRR 343
Cdd:PRK10441  284 VTLLATPALLLFADIIGRLL-VPGELRVSVVSAFIGAPVLIFLVRRKTR 331
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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