|
Name |
Accession |
Description |
Interval |
E-value |
| BaeS |
COG0642 |
Signal transduction histidine kinase [Signal transduction mechanisms]; |
219-406 |
1.42e-22 |
|
Signal transduction histidine kinase [Signal transduction mechanisms];
Pssm-ID: 440407 [Multi-domain] Cd Length: 328 Bit Score: 97.67 E-value: 1.42e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 219 RREQEFSRFASHELRTPIMVIAGSTDILSRVPDQPRvaQKAIVRMQAACEEMRVLTEAFLLL-----GKEKIEPQHFgdq 293
Cdd:COG0642 108 EAKSRFLANVSHELRTPLTAIRGYLELLLEELDEEQ--REYLETILRSADRLLRLINDLLDLsrleaGKLELEPEPV--- 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 294 TLLVCLHQQLEELAPLFAKQDAHYQLN-EQNSGEVYAPASFVTIVINNLIKNAFSYSV--GDIEIDLQQN----TLIITN 366
Cdd:COG0642 183 DLAELLEEVVELFRPLAEEKGIELELDlPDDLPTVRGDPDRLRQVLLNLLSNAIKYTPegGTVTVSVRREgdrvRISVED 262
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1067165491 367 ------------------RHDGNETYNaGYGCGLVIVQRICERMGWPFELN---DDGVRFS 406
Cdd:COG0642 263 tgpgippedlerifepffRTDPSRRGG-GTGLGLAIVKRIVELHGGTIEVEsepGKGTTFT 322
|
|
| cztS_silS_copS |
TIGR01386 |
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain ... |
136-393 |
2.08e-10 |
|
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Pssm-ID: 273593 [Multi-domain] Cd Length: 457 Bit Score: 62.02 E-value: 2.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 136 YLDEYESSLhqFTLLLGGLFSLIMLGYGIYMVKIlsRPLAKIESKISQMPP---DQPaFEVETKFSETRHIEQTLLDCKN 212
Cdd:TIGR01386 158 LLDALRKWL--ILIAVLLVLLTALLGWWITRLGL--EPLRRLSAVAARISPeslDQR-LDPSRAPAELRELAQSFNAMLG 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 213 DIAGYFRREQEFSRFASHELRTPIMVIAGSTDI-LSrvpdQPRVAQKAIVRMQAACEE---MRVLTEAFLLLGKekiepq 288
Cdd:TIGR01386 233 RLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVaLS----QPRTGEEYREVLESNLEElerLSRMVSDMLFLAR------ 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 289 hfGDQTLLVC------LHQQLEELAPLFA--KQDAHYQLNEQNSGEVYAPASFVTIVINNLIKNAFSYSV--GDIEIDLQ 358
Cdd:TIGR01386 303 --ADNGQLALervrldLAAELAKVAEYFEplAEERGVRIRVEGEGLVRGDPQMFRRAISNLLSNALRHTPdgGTITVRIE 380
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1067165491 359 QN----TLIITN------------------RHDGNETYN-AGYGCGLVIVQRICERMG 393
Cdd:TIGR01386 381 RRsdevRVSVSNpgpgippehlsrlfdrfyRVDPARSNSgEGTGLGLAIVRSIMEAHG 438
|
|
| HisKA |
cd00082 |
Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed ... |
219-282 |
9.52e-10 |
|
Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Pssm-ID: 119399 [Multi-domain] Cd Length: 65 Bit Score: 54.14 E-value: 9.52e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1067165491 219 RREQEFSRFASHELRTPIMVIAGSTDILSRVPDQPRVAQKAIVRMQAACEEMRVLTEAFLLLGK 282
Cdd:cd00082 2 QAKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65
|
|
| HisKA |
pfam00512 |
His Kinase A (phospho-acceptor) domain; dimerization and phospho-acceptor domain of histidine ... |
222-282 |
2.07e-07 |
|
His Kinase A (phospho-acceptor) domain; dimerization and phospho-acceptor domain of histidine kinases.
Pssm-ID: 459839 [Multi-domain] Cd Length: 66 Bit Score: 47.59 E-value: 2.07e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1067165491 222 QEFSRFASHELRTPIMVIAGSTDILSRVPDQPRVaQKAIVRMQAACEEMRVLTEAFLLLGK 282
Cdd:pfam00512 3 SEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQ-REYLETILRSAERLLRLINDLLDLSR 62
|
|
| HisKA |
smart00388 |
His Kinase A (phosphoacceptor) domain; Dimerisation and phosphoacceptor domain of histidine ... |
222-282 |
2.78e-06 |
|
His Kinase A (phosphoacceptor) domain; Dimerisation and phosphoacceptor domain of histidine kinases.
Pssm-ID: 214644 [Multi-domain] Cd Length: 66 Bit Score: 44.48 E-value: 2.78e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1067165491 222 QEFSRFASHELRTPIMVIAGSTDILSRvPDQPRVAQKAIVRMQAACEEMRVLTEAFLLLGK 282
Cdd:smart00388 3 REFLANLSHELRTPLTAIRGYLELLLD-TELSEEQREYLETILREAERLLRLINDLLDLSR 62
|
|
| PRK10337 |
PRK10337 |
sensor protein QseC; Provisional |
154-388 |
3.62e-05 |
|
sensor protein QseC; Provisional
Pssm-ID: 182388 [Multi-domain] Cd Length: 449 Bit Score: 45.80 E-value: 3.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 154 LFSL-IMLgygIYMVKILSR---PLAKIESKISQMPPDQpafevETKFSETRhIEQT---LLDCKND----IAGYFRREQ 222
Cdd:PRK10337 168 LVALpIML---IILMVLLGRelaPLKKLALALRMRDPDS-----ETPLNATG-VPSEvrpLVEALNQlfarTHAMMVRER 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 223 EFSRFASHELRTPIMVIAGSTDILSRVPDQPRVAQKAIVRMQAACEEMRVLTEAFLLLGK-------EKIEPQHFGD--- 292
Cdd:PRK10337 239 RFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRldsldnlQDVAEIPLEDllq 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 293 QTLLVCLH--QQleelaplfAKQDAHYQLNEQN---SGEvyapASFVTIVINNLIKNAFSYSV--GDIEIDLQQNTLIIT 365
Cdd:PRK10337 319 SAVMDIYHtaQQ--------AGIDVRLTLNAHPvirTGQ----PLLLSLLVRNLLDNAIRYSPqgSVVDVTLNARNFTVR 386
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1067165491 366 N------------------RHDGNETynAGYGCGLVIVQRI 388
Cdd:PRK10337 387 DngpgvtpealarigerfyRPPGQEA--TGSGLGLSIVRRI 425
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| BaeS |
COG0642 |
Signal transduction histidine kinase [Signal transduction mechanisms]; |
219-406 |
1.42e-22 |
|
Signal transduction histidine kinase [Signal transduction mechanisms];
Pssm-ID: 440407 [Multi-domain] Cd Length: 328 Bit Score: 97.67 E-value: 1.42e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 219 RREQEFSRFASHELRTPIMVIAGSTDILSRVPDQPRvaQKAIVRMQAACEEMRVLTEAFLLL-----GKEKIEPQHFgdq 293
Cdd:COG0642 108 EAKSRFLANVSHELRTPLTAIRGYLELLLEELDEEQ--REYLETILRSADRLLRLINDLLDLsrleaGKLELEPEPV--- 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 294 TLLVCLHQQLEELAPLFAKQDAHYQLN-EQNSGEVYAPASFVTIVINNLIKNAFSYSV--GDIEIDLQQN----TLIITN 366
Cdd:COG0642 183 DLAELLEEVVELFRPLAEEKGIELELDlPDDLPTVRGDPDRLRQVLLNLLSNAIKYTPegGTVTVSVRREgdrvRISVED 262
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1067165491 367 ------------------RHDGNETYNaGYGCGLVIVQRICERMGWPFELN---DDGVRFS 406
Cdd:COG0642 263 tgpgippedlerifepffRTDPSRRGG-GTGLGLAIVKRIVELHGGTIEVEsepGKGTTFT 322
|
|
| KdpD |
COG2205 |
K+-sensing histidine kinase KdpD [Signal transduction mechanisms]; |
219-406 |
3.95e-19 |
|
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
Pssm-ID: 441807 [Multi-domain] Cd Length: 239 Bit Score: 85.73 E-value: 3.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 219 RREQEFSRFASHELRTPIMVIAGSTDILSR-VPDQPRVAQKAIVRMQAACEEMRVLTEAFLLL-----GKEKIEPQHFGd 292
Cdd:COG2205 14 RLKSEFLANVSHELRTPLTSILGAAELLLDeEDLSPEERRELLEIIRESAERLLRLIEDLLDLsrlesGKLSLELEPVD- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 293 qtLLVCLHQQLEELAPLFAKQDAHYQLN-EQNSGEVYAPASFVTIVINNLIKNAFSYS--VGDIEIDLQQN----TLIIT 365
Cdd:COG2205 93 --LAELLEEAVEELRPLAEEKGIRLELDlPPELPLVYADPELLEQVLANLLDNAIKYSppGGTITISARREgdgvRISVS 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1067165491 366 NR----------------HDGNETYNA-GYGCGLVIVQRICERMGWPFELNDD---GVRFS 406
Cdd:COG2205 171 DNgpgipeeeleriferfYRGDNSRGEgGTGLGLAIVKRIVEAHGGTIWVESEpggGTTFT 231
|
|
| WalK |
COG5002 |
Sensor histidine kinase WalK [Signal transduction mechanisms]; |
217-393 |
3.02e-15 |
|
Sensor histidine kinase WalK [Signal transduction mechanisms];
Pssm-ID: 444026 [Multi-domain] Cd Length: 390 Bit Score: 76.90 E-value: 3.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 217 YFRREQEFSRFASHELRTPIMVIAGSTD-ILSRVPDQPRVAQKAIVRMQAACEEMRVLTEAFLLL-----GKEKIEPQHF 290
Cdd:COG5002 161 LEQMRREFVANVSHELRTPLTSIRGYLElLLDGAADDPEERREYLEIILEEAERLSRLVNDLLDLsrlesGELKLEKEPV 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 291 gdqTLLVCLHQQLEELAPLFAKQDAHYQLN-EQNSGEVYAPASFVTIVINNLIKNAFSYSV--GDIEIDLQQ--NTLIIT 365
Cdd:COG5002 241 ---DLAELLEEVVEELRPLAEEKGIELELDlPEDPLLVLGDPDRLEQVLTNLLDNAIKYTPegGTITVSLREedDQVRIS 317
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1067165491 366 ---------------------------NRHDGnetynaGYGCGLVIVQRICERMG 393
Cdd:COG5002 318 vrdtgigipeedlpriferfyrvdksrSRETG------GTGLGLAIVKHIVEAHG 366
|
|
| cztS_silS_copS |
TIGR01386 |
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain ... |
136-393 |
2.08e-10 |
|
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Pssm-ID: 273593 [Multi-domain] Cd Length: 457 Bit Score: 62.02 E-value: 2.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 136 YLDEYESSLhqFTLLLGGLFSLIMLGYGIYMVKIlsRPLAKIESKISQMPP---DQPaFEVETKFSETRHIEQTLLDCKN 212
Cdd:TIGR01386 158 LLDALRKWL--ILIAVLLVLLTALLGWWITRLGL--EPLRRLSAVAARISPeslDQR-LDPSRAPAELRELAQSFNAMLG 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 213 DIAGYFRREQEFSRFASHELRTPIMVIAGSTDI-LSrvpdQPRVAQKAIVRMQAACEE---MRVLTEAFLLLGKekiepq 288
Cdd:TIGR01386 233 RLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVaLS----QPRTGEEYREVLESNLEElerLSRMVSDMLFLAR------ 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 289 hfGDQTLLVC------LHQQLEELAPLFA--KQDAHYQLNEQNSGEVYAPASFVTIVINNLIKNAFSYSV--GDIEIDLQ 358
Cdd:TIGR01386 303 --ADNGQLALervrldLAAELAKVAEYFEplAEERGVRIRVEGEGLVRGDPQMFRRAISNLLSNALRHTPdgGTITVRIE 380
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1067165491 359 QN----TLIITN------------------RHDGNETYN-AGYGCGLVIVQRICERMG 393
Cdd:TIGR01386 381 RRsdevRVSVSNpgpgippehlsrlfdrfyRVDPARSNSgEGTGLGLAIVRSIMEAHG 438
|
|
| COG4251 |
COG4251 |
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal ... |
222-393 |
2.28e-10 |
|
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms];
Pssm-ID: 443393 [Multi-domain] Cd Length: 503 Bit Score: 62.11 E-value: 2.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 222 QEFSRFASHELRTPIMVIAGSTDILSR--VPDQPRVAQKAIVRMQAACEEMRVLTEAfLL----LGKEKIEPQHFgDqtL 295
Cdd:COG4251 283 EQFAYVASHDLREPLRKISGFSQLLEEdyGDKLDEEGREYLERIRDAAERMQALIDD-LLaysrVGRQELEFEPV-D--L 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 296 LVCLHQQLEELAPLFakQDAHYQLNEQNSGEVYAPASFVTIVINNLIKNAFSYS----VGDIEIDLQQN----TLIIT-- 365
Cdd:COG4251 359 NELLEEVLEDLEPRI--EERGAEIEVGPLPTVRGDPTLLRQVFQNLISNAIKYSrpgePPRIEIGAEREggewVFSVRdn 436
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1067165491 366 ----------------NRHDGNETYnAGYGCGLVIVQRICERMG 393
Cdd:COG4251 437 gigidpeyaekifeifQRLHSRDEY-EGTGIGLAIVKKIVERHG 479
|
|
| HisKA |
cd00082 |
Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed ... |
219-282 |
9.52e-10 |
|
Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Pssm-ID: 119399 [Multi-domain] Cd Length: 65 Bit Score: 54.14 E-value: 9.52e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1067165491 219 RREQEFSRFASHELRTPIMVIAGSTDILSRVPDQPRVAQKAIVRMQAACEEMRVLTEAFLLLGK 282
Cdd:cd00082 2 QAKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65
|
|
| phoR_proteo |
TIGR02966 |
phosphate regulon sensor kinase PhoR; Members of this protein family are the regulatory ... |
222-358 |
2.32e-08 |
|
phosphate regulon sensor kinase PhoR; Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems]
Pssm-ID: 274368 [Multi-domain] Cd Length: 333 Bit Score: 55.29 E-value: 2.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 222 QEFSRFASHELRTPIMVIAGSTDILSRVPD-QPRVAQKAIVRMQAACEEMRVLTEAFLLLGKEKIEPQHFGDQTLLV--C 298
Cdd:TIGR02966 115 RDFVANVSHELRTPLTVLRGYLETLADGPDeDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMpaL 194
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 299 LHQQLEELAPLFAKQDAHYQLNEQNSGEVYAPASFVTIVINNLIKNAFSYSVGDIEIDLQ 358
Cdd:TIGR02966 195 LDHLRDEAEALSQGKNHQITFEIDGGVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVR 254
|
|
| HisKA |
pfam00512 |
His Kinase A (phospho-acceptor) domain; dimerization and phospho-acceptor domain of histidine ... |
222-282 |
2.07e-07 |
|
His Kinase A (phospho-acceptor) domain; dimerization and phospho-acceptor domain of histidine kinases.
Pssm-ID: 459839 [Multi-domain] Cd Length: 66 Bit Score: 47.59 E-value: 2.07e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1067165491 222 QEFSRFASHELRTPIMVIAGSTDILSRVPDQPRVaQKAIVRMQAACEEMRVLTEAFLLLGK 282
Cdd:pfam00512 3 SEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQ-REYLETILRSAERLLRLINDLLDLSR 62
|
|
| HisKA |
smart00388 |
His Kinase A (phosphoacceptor) domain; Dimerisation and phosphoacceptor domain of histidine ... |
222-282 |
2.78e-06 |
|
His Kinase A (phosphoacceptor) domain; Dimerisation and phosphoacceptor domain of histidine kinases.
Pssm-ID: 214644 [Multi-domain] Cd Length: 66 Bit Score: 44.48 E-value: 2.78e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1067165491 222 QEFSRFASHELRTPIMVIAGSTDILSRvPDQPRVAQKAIVRMQAACEEMRVLTEAFLLLGK 282
Cdd:smart00388 3 REFLANLSHELRTPLTAIRGYLELLLD-TELSEEQREYLETILREAERLLRLINDLLDLSR 62
|
|
| marine_sort_HK |
TIGR03785 |
proteobacterial dedicated sortase system histidine kinase; This histidine kinase protein is ... |
222-405 |
5.84e-06 |
|
proteobacterial dedicated sortase system histidine kinase; This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Pssm-ID: 163497 [Multi-domain] Cd Length: 703 Bit Score: 48.59 E-value: 5.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 222 QEFSRFASHELRTPIMVIAGSTDILSRVPDQPRvAQKAIVRMQAACEEMRVL----TEAFLLlgKEKI---EPQHFGDQT 294
Cdd:TIGR03785 486 ENMSSRLSHELRTPVAVVRSSLENLELQALEQE-KQKYLERAREGTERLSMIlnnmSEATRL--EQAIqsaEVEDFDLSE 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 295 LLVCLHQQLEelaPLFAKQDAHYQLNE-----QNSGEVYAPAsfvtivINNLIKNA--FSYSVGDIEIDLQQN----TLI 363
Cdd:TIGR03785 563 VLSGCMQGYQ---MTYPPQRFELNIPEtplvmRGSPELIAQM------LDKLVDNAreFSPEDGLIEVGLSQNkshaLLT 633
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1067165491 364 ITN------RHDGNETYNA-------------GYGCGLVIVQRICERMGWPFEL----NDDGVRF 405
Cdd:TIGR03785 634 VSNegpplpEDMGEQLFDSmvsvrdqgaqdqpHLGLGLYIVRLIADFHQGRIQAenrqQNDGVVF 698
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
229-406 |
8.82e-06 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 47.65 E-value: 8.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 229 SHELRTPIMVIAGSTDILSR-----VPDQPRVAQKAIVRMQAACEEMRVLTEAFLLLGK-EKIEPQhfgdqtlLVCLHQQ 302
Cdd:COG5000 209 AHEIKNPLTPIQLSAERLRRkladkLEEDREDLERALDTIIRQVDRLKRIVDEFLDFARlPEPQLE-------PVDLNEL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 303 LEELAPLFAKQDAHYQLN-----EQNSGEVYAPASFVTIVINNLIKNAF--SYSVGDIEIDLQQN----TLII------- 364
Cdd:COG5000 282 LREVLALYEPALKEKDIRleldlDPDLPEVLADRDQLEQVLINLLKNAIeaIEEGGEIEVSTRREdgrvRIEVsdngpgi 361
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1067165491 365 -------------TNRHDGNetynagyGCGLVIVQRICERMGWPFELN---DDGVRFS 406
Cdd:COG5000 362 peevlerifepffTTKPKGT-------GLGLAIVKKIVEEHGGTIELEsrpGGGTTFT 412
|
|
| COG4191 |
COG4191 |
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal ... |
230-372 |
3.10e-05 |
|
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms];
Pssm-ID: 443345 [Multi-domain] Cd Length: 361 Bit Score: 45.56 E-value: 3.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 230 HELRTPIMVIAGSTDILSR-VPDQPRV--AQKAIVRMQAACEEMRVLTEAFLLLG-KEKIEPQhfgdqtlLVCLHQQLEE 305
Cdd:COG4191 151 HEINNPLAAILGNAELLRRrLEDEPDPeeLREALERILEGAERAAEIVRSLRAFSrRDEEERE-------PVDLNELIDE 223
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1067165491 306 ----LAPLFAKQDAHYQLN-EQNSGEVYAPASFVTIVINNLIKNAFsYSVGDIEidlqQNTLIITNRHDGNE 372
Cdd:COG4191 224 alelLRPRLKARGIEVELDlPPDLPPVLGDPGQLEQVLLNLLINAI-DAMEEGE----GGRITISTRREGDY 290
|
|
| PRK10337 |
PRK10337 |
sensor protein QseC; Provisional |
154-388 |
3.62e-05 |
|
sensor protein QseC; Provisional
Pssm-ID: 182388 [Multi-domain] Cd Length: 449 Bit Score: 45.80 E-value: 3.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 154 LFSL-IMLgygIYMVKILSR---PLAKIESKISQMPPDQpafevETKFSETRhIEQT---LLDCKND----IAGYFRREQ 222
Cdd:PRK10337 168 LVALpIML---IILMVLLGRelaPLKKLALALRMRDPDS-----ETPLNATG-VPSEvrpLVEALNQlfarTHAMMVRER 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 223 EFSRFASHELRTPIMVIAGSTDILSRVPDQPRVAQKAIVRMQAACEEMRVLTEAFLLLGK-------EKIEPQHFGD--- 292
Cdd:PRK10337 239 RFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRldsldnlQDVAEIPLEDllq 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 293 QTLLVCLH--QQleelaplfAKQDAHYQLNEQN---SGEvyapASFVTIVINNLIKNAFSYSV--GDIEIDLQQNTLIIT 365
Cdd:PRK10337 319 SAVMDIYHtaQQ--------AGIDVRLTLNAHPvirTGQ----PLLLSLLVRNLLDNAIRYSPqgSVVDVTLNARNFTVR 386
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1067165491 366 N------------------RHDGNETynAGYGCGLVIVQRI 388
Cdd:PRK10337 387 DngpgvtpealarigerfyRPPGQEA--TGSGLGLSIVRRI 425
|
|
| HATPase_c |
smart00387 |
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. |
337-393 |
1.05e-04 |
|
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Pssm-ID: 214643 [Multi-domain] Cd Length: 111 Bit Score: 41.48 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 337 VINNLIKNA--FSYSVGDIEIDL--QQNTLIITNRHDG--------------------NETYNAGYGCGLVIVQRICERM 392
Cdd:smart00387 9 VLSNLLDNAikYTPEGGRITVTLerDGDHVEITVEDNGpgippedlekifepffrtdkRSRKIGGTGLGLSIVKKLVELH 88
|
.
gi 1067165491 393 G 393
Cdd:smart00387 89 G 89
|
|
| phoR |
PRK11006 |
phosphate regulon sensor histidine kinase PhoR; |
227-360 |
3.77e-03 |
|
phosphate regulon sensor histidine kinase PhoR;
Pssm-ID: 182895 [Multi-domain] Cd Length: 430 Bit Score: 39.22 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 227 FA--SHELRTPIMVIAGSTDILSRVPDQPRVAQKAIVRMQAACEEMRVLTEAFLLLGKEKIEPQHFGDQT-----LLVCL 299
Cdd:PRK11006 208 FAnvSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKvdvpmMLRVL 287
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1067165491 300 HQQLEELAPlfAKQDAHYQLNEQNSgeVYAPASFVTIVINNLIKNAFSYSV--GDIEIDLQQN 360
Cdd:PRK11006 288 EREAQTLSQ--GKHTITFEVDNSLK--VFGNEDQLRSAISNLVYNAVNHTPegTHITVRWQRV 346
|
|
| HATPase_c |
pfam02518 |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ... |
337-409 |
7.67e-03 |
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 460579 [Multi-domain] Cd Length: 109 Bit Score: 35.81 E-value: 7.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 337 VINNLIKNA--FSYSVGDIEIDLQQ-NTLIITNRHDG------------------NETYNAGYGCGLVIVQRICERMGWP 395
Cdd:pfam02518 9 VLSNLLDNAlkHAAKAGEITVTLSEgGELTLTVEDNGigippedlprifepfstaDKRGGGGTGLGLSIVRKLVELLGGT 88
|
90
....*....|....*..
gi 1067165491 396 FELNDD---GVRFSAKV 409
Cdd:pfam02518 89 ITVESEpggGTTVTLTL 105
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
198-346 |
8.19e-03 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 38.29 E-value: 8.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067165491 198 SETRHIEQTLLdckndiagyfRREQ-----EFSRFASHELRTPIMVIAGSTDILSRVPDQPRVaQKAIVRMQAACEEMRV 272
Cdd:COG3852 117 TERKRLERELR----------RAEKlaavgELAAGLAHEIRNPLTGIRGAAQLLERELPDDEL-REYTQLIIEEADRLNN 185
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1067165491 273 LTEAFLLLGKEKiePQHFGDqtllVCLHQQLEELAPLFAKQ-DAHYQLNEQ---NSGEVYAPASFVTIVINNLIKNAF 346
Cdd:COG3852 186 LVDRLLSFSRPR--PPEREP----VNLHEVLERVLELLRAEaPKNIRIVRDydpSLPEVLGDPDQLIQVLLNLVRNAA 257
|
|
| |
