|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
227-683 |
0e+00 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 628.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 227 EEVTDLKEIQTLLEAIINSSEEAISVVDEKGRGLVINPAYTKLTGLTEEDIIGKPATTdiVEGESMHMKVLRTRRAVRGI 306
Cdd:COG3829 1 AEELELKELEEELEAILDSLDDGIIVVDADGRITYVNRAAERILGLPREEVIGKNVTE--LIPNSPLLEVLKTGKPVTGV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 307 HMKIGQKKRDVIVNVAPVIVDGILKGSVGVIRDVSEIQKLTNELNRaRQIIRTLEAKYSFDDIVGNSDETTAAIEQAKLG 386
Cdd:COG3829 79 IQKTGGKGKTVIVTAIPIFEDGEVIGAVETFRDITELKRLERKLRE-EELERGLSAKYTFDDIIGKSPAMKELLELAKRV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 387 ANTPATVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELFGYEEGAFSGAKRGGKRGFFEEANNGSI 466
Cdd:COG3829 158 AKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKPGLFELADGGTL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 467 FLDEIGELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKG 546
Cdd:COG3829 238 FLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKE 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 547 DIPTIADRLIQKINQDYGRNVEGLTDSAVLYLQSYEWPGNVRELENILGRAIIFMNYNEtyIDVHHLPPLHNEEQVESKQ 626
Cdd:COG3829 318 DIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDV--ITPEHLPEYLLEEAEAASA 395
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1068632266 627 ShllpelEEKPLEHLVTEFEGNIIYEYLERFDGNKTQTAKALGISVRNLYYKLEKYD 683
Cdd:COG3829 396 A------EEGSLKEALEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKKYG 446
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
165-683 |
3.01e-135 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 409.67 E-value: 3.01e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 165 EVIPTSKLLRIIRTKQIEVNYELTLENGKKII----TTRIPILKEGgEVQGAFAIfKDITEVVDLAeevtdLKEIQTLLE 240
Cdd:NF041552 65 KNIFDKPIKDYMKKDVITISKEESLREARNIMiknnIGRLPVLENG-KVIGVIRQ-EDIRDYFYMK-----LEEMGETLK 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 241 AIINSSEEAISVVDEKGRGLVINPAYTKLTGLTEEDIIGKPATTDIVEGesMHMKVLRTRRAVRGI-HMKIgqKKRDVIV 319
Cdd:NF041552 138 HILDNIHEAVCVIDKEGIVILWNKSAEKLYGVKSEEIVGKPLEEFFPNA--LLLKVLKTKKPIENVyHSPK--EGSYVII 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 320 NVAPVIVDGILKGSVGVIRDVSEIQKLTNELNRARQIIRTLEAKY------SFDDIVGNSDETTAAIEQAKLGANTPATV 393
Cdd:NF041552 214 SAVPIFINGEFIGVVSTDRDITEVKNLSKELEKAKEKLEYLEEEVkkisedSFGKIIGKSKKIIKKIEIAKQVAKTNSSV 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 394 LLRGESGTGKELFAHAIHNGSNRKYNkFVRVNCAAISETLLESELFGYEEGAFSGAKRGGKRGFFEEANNGSIFLDEIGE 473
Cdd:NF041552 294 LITGESGTGKEVFARAIHQASGRKGP-FVPVNCSAIPEELFESEFFGYEEGAFTGALKKGKIGKFELANNGTLFLDEIGD 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 474 LSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDIPTIAD 553
Cdd:NF041552 373 MPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFREDLYYRLNVVEIELPPLRERKEDIPLLIN 452
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 554 RLIQKINQDYGRNVEGLTDSAVLYLQSYEWPGNVRELENILGRAIIFMNYNETYIDvhhLPPLHNEEQVESKQShlLPEL 633
Cdd:NF041552 453 YFLKEICKENNKEIPKIDKEVYDILQNYKWKGNIRELKNTIEHLVVLSKNGTITKD---SIPEYILESVKKKED--EEGD 527
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1068632266 634 EEKPLEHLVTEFEGNIIYEYLERFDGNKTQTAKALGISVRNLYYKLEKYD 683
Cdd:NF041552 528 YPLDLNKAVEKLEIDTIKKALEMSNGNKAKAAKLLNIPRSTLYYKLKQYG 577
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
321-683 |
5.74e-102 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 322.05 E-value: 5.74e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 321 VAPVIVDGI-LKGSVGVIRDVSEIQKLTNELNRARQIIRTLEAKYSFDD-IVGNSDETTAAIEQAKLGANTPATVLLRGE 398
Cdd:TIGR01817 148 VANLIGQTVrLHRLVAQRRERLIAEAVQLSKQLRDKAPEIARRRSGKEDgIIGKSPAMRQVVDQARVVARSNSTVLLRGE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 399 SGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELFGYEEGAFSGAKRGGKrGFFEEANNGSIFLDEIGELSANT 478
Cdd:TIGR01817 228 SGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRK-GRFELADGGTLFLDEIGEISPAF 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 479 QAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDIPTIADRLIQK 558
Cdd:TIGR01817 307 QAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEK 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 559 INQDYGRNVEgLTDSAVLYLQSYEWPGNVRELENILGRAIIFMnyNETYIDVHHL---------PPLHNEEQVESKQSHL 629
Cdd:TIGR01817 387 FNRENGRPLT-ITPSAIRVLMSCKWPGNVRELENCLERTATLS--RSGTITRSDFscqsgqclsPMLAKTCPHGHISIDP 463
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1068632266 630 LPELE--------EKPLEHLVTE---FEGNIIYEYLERFDGNKTQTAKALGISVRNLYYKLEKYD 683
Cdd:TIGR01817 464 LAGTTpphspasaALPGEPGLSGptlSERERLIAALEQAGWVQAKAARLLGMTPRQVGYALRKLN 528
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
328-681 |
1.49e-100 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 318.59 E-value: 1.49e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 328 GILKGSVGVIR----DVSEIQKLTnELNRARQIIR-TLEAKYSFDDIVGNSdettAAIEQAK----LGANTPATVLLRGE 398
Cdd:PRK15424 176 GIFIYSAATVRqafeDALDMTRMT-LRHNTHYATRnALRTRYVLGDLLGQS----PQMEQVRqtilLYARSSAAVLIQGE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 399 SGTGKELFAHAIHNG--------SNRKYNKFVRVNCAAISETLLESELFGYEEGAFSGAKRGGKRGFFEEANNGSIFLDE 470
Cdd:PRK15424 251 TGTGKELAAQAIHREyfarhdarQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 471 IGELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDIPT 550
Cdd:PRK15424 331 IGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILP 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 551 IADRLIQK----INQDYGRNV-EGLTDSAVLyLQSYEWPGNVRELENILGRAIIFmnynetyIDVHHLPPLhNEEQVESk 625
Cdd:PRK15424 411 LAESFLKQslaaLSAPFSAALrQGLQQCETL-LLHYDWPGNVRELRNLMERLALF-------LSVEPTPDL-TPQFLQL- 480
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1068632266 626 qshLLPELEEKPLEHLVTEFEGNIIYEYLERFDGNKTQTAKALGISVRNLYYKLEK 681
Cdd:PRK15424 481 ---LLPELARESAKTPAPRLLAATLQQALERFNGDKTAAANYLGISRTTLWRRLKA 533
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
369-537 |
2.12e-97 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 297.01 E-value: 2.12e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 369 IVGNSDETTAAIEQAKLGANTPATVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELFGYEEGAFSG 448
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 449 AKRGGKrGFFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLY 528
Cdd:pfam00158 81 ADSDRK-GLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLY 159
|
....*....
gi 1068632266 529 YRLNKIPIQ 537
Cdd:pfam00158 160 YRLNVIPIE 168
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
370-534 |
7.47e-21 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 89.51 E-value: 7.47e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 370 VGNSDETTAAIEQAKLgaNTPATVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELFGYEEgafsga 449
Cdd:cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFL------ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 450 kRGGKRGFFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEIvkvggTKAIPINVRVIAATHVNlekaiLEGKFREDLYY 529
Cdd:cd00009 73 -VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLND-----LRIDRENVRVIGATNRP-----LLGDLDRALYD 141
|
....*
gi 1068632266 530 RLNKI 534
Cdd:cd00009 142 RLDIR 146
|
|
| sensory_box |
TIGR00229 |
PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain ... |
121-228 |
4.46e-15 |
|
PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. [Regulatory functions, Small molecule interactions]
Pssm-ID: 272971 [Multi-domain] Cd Length: 124 Bit Score: 71.94 E-value: 4.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 121 ELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIP------TSKLLRIIRTKQIEVNYELTL---EN 191
Cdd:TIGR00229 6 RAIFESSPDAIIVIDLEGNILYVNPAFEEIFGYSAEELIGRNVLELIPeedreeVRERIERRLEGEPEPVSEERRvrrKD 85
|
90 100 110
....*....|....*....|....*....|....*...
gi 1068632266 192 GKKI-ITTRIPILKEGGEVQGAFAIFKDITEVVDLAEE 228
Cdd:TIGR00229 86 GSEIwVEVSVSPIRTNGGELGVVGIVRDITERKEAEEA 123
|
|
| PRK11360 |
PRK11360 |
two-component system sensor histidine kinase AtoS; |
92-229 |
1.37e-14 |
|
two-component system sensor histidine kinase AtoS;
Pssm-ID: 236901 [Multi-domain] Cd Length: 607 Bit Score: 77.32 E-value: 1.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 92 PGDIAKIVTGLAhekeeliGRLEEQTQQGELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPT-- 169
Cdd:PRK11360 243 LGEISQAINNLA-------QALRETRSLNELILESIADGVIAIDRQGKITTMNPAAEVITGLQRHELVGKPYSELFPPnt 315
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1068632266 170 ---SKLLRIIRTKQIEVNYELTLEN---GKKIITTRIPILKEGGEVQGAFAIFKDITEVVDLAEEV 229
Cdd:PRK11360 316 pfaSPLLDTLEHGTEHVDLEISFPGrdrTIELSVSTSLLHNTHGEMIGALVIFSDLTERKRLQRRV 381
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
112-229 |
1.56e-14 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 75.65 E-value: 1.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 112 RLEEQTQQGELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPTSKLL-----RIIRTKQIEVNYE 186
Cdd:COG3852 1 ALRESEELLRAILDSLPDAVIVLDADGRITYVNPAAERLLGLSAEELLGRPLAELFPEDSPLrelleRALAEGQPVTERE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1068632266 187 LTLE--NGKKII--TTRIPILKEGGEvQGAFAIFKDITEVVDLAEEV 229
Cdd:COG3852 81 VTLRrkDGEERPvdVSVSPLRDAEGE-GGVLLVLRDITERKRLEREL 126
|
|
| PAS |
pfam00989 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
118-219 |
2.23e-14 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395786 [Multi-domain] Cd Length: 113 Bit Score: 69.75 E-value: 2.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 118 QQGELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPT-------SKLLRIIRTKQIEVNYELTLE 190
Cdd:pfam00989 1 EDLRAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEeddaevaELLRQALLQGEESRGFEVSFR 80
|
90 100 110
....*....|....*....|....*....|...
gi 1068632266 191 --NGKKII--TTRIPILKEGGEVQGAFAIFKDI 219
Cdd:pfam00989 81 vpDGRPRHveVRASPVRDAGGEILGFLGVLRDI 113
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
389-531 |
1.26e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 63.16 E-value: 1.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 389 TPATVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLES-ELFGYEEGAFSGAKRGGKRGFFEEANNGS-- 465
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlLLIIVGGKKASGSGELRLRLALALARKLKpd 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1068632266 466 -IFLDEIGELSANTQAKLLRVLQEkeiVKVGGTKAIPINVRVIAATH--VNLEKAILEGKFREDLYYRL 531
Cdd:smart00382 81 vLILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLLL 146
|
|
| PAS |
smart00091 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
118-180 |
2.38e-11 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.
Pssm-ID: 214512 Cd Length: 67 Bit Score: 59.72 E-value: 2.38e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1068632266 118 QQGELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPTSKLLRIIRTKQ 180
Cdd:smart00091 1 ERLRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELIHPEDRERVQEALQ 63
|
|
| PAS |
cd00130 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
127-219 |
2.08e-09 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Pssm-ID: 238075 [Multi-domain] Cd Length: 103 Bit Score: 55.33 E-value: 2.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 127 THDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPTSKLLRIIRT--------KQIEVNYELTLENGKKII-- 196
Cdd:cd00130 1 LPDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERlenllsggEPVTLEVRLRRKDGSVIWvl 80
|
90 100
....*....|....*....|...
gi 1068632266 197 TTRIPILKEGGEVQGAFAIFKDI 219
Cdd:cd00130 81 VSLTPIRDEGGEVIGLLGVVRDI 103
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
227-683 |
0e+00 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 628.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 227 EEVTDLKEIQTLLEAIINSSEEAISVVDEKGRGLVINPAYTKLTGLTEEDIIGKPATTdiVEGESMHMKVLRTRRAVRGI 306
Cdd:COG3829 1 AEELELKELEEELEAILDSLDDGIIVVDADGRITYVNRAAERILGLPREEVIGKNVTE--LIPNSPLLEVLKTGKPVTGV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 307 HMKIGQKKRDVIVNVAPVIVDGILKGSVGVIRDVSEIQKLTNELNRaRQIIRTLEAKYSFDDIVGNSDETTAAIEQAKLG 386
Cdd:COG3829 79 IQKTGGKGKTVIVTAIPIFEDGEVIGAVETFRDITELKRLERKLRE-EELERGLSAKYTFDDIIGKSPAMKELLELAKRV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 387 ANTPATVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELFGYEEGAFSGAKRGGKRGFFEEANNGSI 466
Cdd:COG3829 158 AKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKPGLFELADGGTL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 467 FLDEIGELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKG 546
Cdd:COG3829 238 FLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKE 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 547 DIPTIADRLIQKINQDYGRNVEGLTDSAVLYLQSYEWPGNVRELENILGRAIIFMNYNEtyIDVHHLPPLHNEEQVESKQ 626
Cdd:COG3829 318 DIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDV--ITPEHLPEYLLEEAEAASA 395
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1068632266 627 ShllpelEEKPLEHLVTEFEGNIIYEYLERFDGNKTQTAKALGISVRNLYYKLEKYD 683
Cdd:COG3829 396 A------EEGSLKEALEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKKYG 446
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
165-683 |
3.01e-135 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 409.67 E-value: 3.01e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 165 EVIPTSKLLRIIRTKQIEVNYELTLENGKKII----TTRIPILKEGgEVQGAFAIfKDITEVVDLAeevtdLKEIQTLLE 240
Cdd:NF041552 65 KNIFDKPIKDYMKKDVITISKEESLREARNIMiknnIGRLPVLENG-KVIGVIRQ-EDIRDYFYMK-----LEEMGETLK 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 241 AIINSSEEAISVVDEKGRGLVINPAYTKLTGLTEEDIIGKPATTDIVEGesMHMKVLRTRRAVRGI-HMKIgqKKRDVIV 319
Cdd:NF041552 138 HILDNIHEAVCVIDKEGIVILWNKSAEKLYGVKSEEIVGKPLEEFFPNA--LLLKVLKTKKPIENVyHSPK--EGSYVII 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 320 NVAPVIVDGILKGSVGVIRDVSEIQKLTNELNRARQIIRTLEAKY------SFDDIVGNSDETTAAIEQAKLGANTPATV 393
Cdd:NF041552 214 SAVPIFINGEFIGVVSTDRDITEVKNLSKELEKAKEKLEYLEEEVkkisedSFGKIIGKSKKIIKKIEIAKQVAKTNSSV 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 394 LLRGESGTGKELFAHAIHNGSNRKYNkFVRVNCAAISETLLESELFGYEEGAFSGAKRGGKRGFFEEANNGSIFLDEIGE 473
Cdd:NF041552 294 LITGESGTGKEVFARAIHQASGRKGP-FVPVNCSAIPEELFESEFFGYEEGAFTGALKKGKIGKFELANNGTLFLDEIGD 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 474 LSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDIPTIAD 553
Cdd:NF041552 373 MPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFREDLYYRLNVVEIELPPLRERKEDIPLLIN 452
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 554 RLIQKINQDYGRNVEGLTDSAVLYLQSYEWPGNVRELENILGRAIIFMNYNETYIDvhhLPPLHNEEQVESKQShlLPEL 633
Cdd:NF041552 453 YFLKEICKENNKEIPKIDKEVYDILQNYKWKGNIRELKNTIEHLVVLSKNGTITKD---SIPEYILESVKKKED--EEGD 527
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1068632266 634 EEKPLEHLVTEFEGNIIYEYLERFDGNKTQTAKALGISVRNLYYKLEKYD 683
Cdd:NF041552 528 YPLDLNKAVEKLEIDTIKKALEMSNGNKAKAAKLLNIPRSTLYYKLKQYG 577
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
342-683 |
8.71e-127 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 382.39 E-value: 8.71e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 342 EIQKLTNELNRARQIIRTLEAKYSFDDIVGNSDETTAAIEQAKLGANTPATVLLRGESGTGKELFAHAIHNGSNRKYNKF 421
Cdd:COG2204 106 DLEELLAAVERALERRRLRRENAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPF 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 422 VRVNCAAISETLLESELFGYEEGAFSGAKRGgKRGFFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEIVKVGGTKAIP 501
Cdd:COG2204 186 VAVNCAAIPEELLESELFGHEKGAFTGAVAR-RIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIP 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 502 INVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDIPTIADRLIQKINQDYGRNVEgLTDSAVLYLQSY 581
Cdd:COG2204 265 VDVRVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVK-LSPEALEALLAY 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 582 EWPGNVRELENILGRAIIFMNYNEtyIDVHHLPplhneeqveskqshllpeleeKPLEhlvtEFEGNIIYEYLERFDGNK 661
Cdd:COG2204 344 DWPGNVRELENVIERAVILADGEV--ITAEDLP---------------------EALE----EVERELIERALEETGGNV 396
|
330 340
....*....|....*....|..
gi 1068632266 662 TQTAKALGISVRNLYYKLEKYD 683
Cdd:COG2204 397 SRAAELLGISRRTLYRKLKKYG 418
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
239-683 |
2.52e-124 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 383.10 E-value: 2.52e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 239 LEAIINSSEEAISVVDEKGRGLVINPAYTKLTGLTEEDIIGKPATtDIVEgesMHMKVLRTRRAVRGIHmkigqkkrdvi 318
Cdd:COG3284 218 LPEFLGSLSEGLLAFDEDGRIVAANRAARRLLGLADAALLGRPLE-ELFG---LDLEALPDGARRAPAS----------- 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 319 vnvaPVIVDGILKGSVGVIRDVSEIQKltnelnRARQIIRTLEAKYSFDDIVGNSDETTAAIEQAKLGANTPATVLLRGE 398
Cdd:COG3284 283 ----PRPLRLRDGRRLGALLRLRPARR------AARAAPAGAPAPAALAALAGGDPAMRRALRRARRLADRDIPVLILGE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 399 SGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELFGYEEGAFSGAKRGGKRGFFEEANNGSIFLDEIGELSANT 478
Cdd:COG3284 353 TGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAFTGARRKGRPGKIEQADGGTLFLDEIGDMPLAL 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 479 QAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRkGDIPTIADRLIQK 558
Cdd:COG3284 433 QARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFREDLYYRLNGLTLTLPPLRER-EDLPALIEHLLRE 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 559 INQDYGRNveGLTDSAVLYLQSYEWPGNVRELENILGRAIIFmnYNETYIDVHHLPPlhnEEQVESKQSHLLPELEEKPL 638
Cdd:COG3284 512 LAAGRGPL--RLSPEALALLAAYPWPGNVRELRNVLRTALAL--ADGGVITVEDLPD---ELRAELAAAAPAAAAPLTSL 584
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1068632266 639 EHLvtefEGNIIYEYLERFDGNKTQTAKALGISvRN-LYYKLEKYD 683
Cdd:COG3284 585 EEA----ERDAILRALRACGGNVSAAARALGIS-RStLYRKLKRYG 625
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
321-683 |
5.74e-102 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 322.05 E-value: 5.74e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 321 VAPVIVDGI-LKGSVGVIRDVSEIQKLTNELNRARQIIRTLEAKYSFDD-IVGNSDETTAAIEQAKLGANTPATVLLRGE 398
Cdd:TIGR01817 148 VANLIGQTVrLHRLVAQRRERLIAEAVQLSKQLRDKAPEIARRRSGKEDgIIGKSPAMRQVVDQARVVARSNSTVLLRGE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 399 SGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELFGYEEGAFSGAKRGGKrGFFEEANNGSIFLDEIGELSANT 478
Cdd:TIGR01817 228 SGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRK-GRFELADGGTLFLDEIGEISPAF 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 479 QAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDIPTIADRLIQK 558
Cdd:TIGR01817 307 QAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEK 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 559 INQDYGRNVEgLTDSAVLYLQSYEWPGNVRELENILGRAIIFMnyNETYIDVHHL---------PPLHNEEQVESKQSHL 629
Cdd:TIGR01817 387 FNRENGRPLT-ITPSAIRVLMSCKWPGNVRELENCLERTATLS--RSGTITRSDFscqsgqclsPMLAKTCPHGHISIDP 463
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1068632266 630 LPELE--------EKPLEHLVTE---FEGNIIYEYLERFDGNKTQTAKALGISVRNLYYKLEKYD 683
Cdd:TIGR01817 464 LAGTTpphspasaALPGEPGLSGptlSERERLIAALEQAGWVQAKAARLLGMTPRQVGYALRKLN 528
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
328-681 |
1.49e-100 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 318.59 E-value: 1.49e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 328 GILKGSVGVIR----DVSEIQKLTnELNRARQIIR-TLEAKYSFDDIVGNSdettAAIEQAK----LGANTPATVLLRGE 398
Cdd:PRK15424 176 GIFIYSAATVRqafeDALDMTRMT-LRHNTHYATRnALRTRYVLGDLLGQS----PQMEQVRqtilLYARSSAAVLIQGE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 399 SGTGKELFAHAIHNG--------SNRKYNKFVRVNCAAISETLLESELFGYEEGAFSGAKRGGKRGFFEEANNGSIFLDE 470
Cdd:PRK15424 251 TGTGKELAAQAIHREyfarhdarQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 471 IGELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDIPT 550
Cdd:PRK15424 331 IGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILP 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 551 IADRLIQK----INQDYGRNV-EGLTDSAVLyLQSYEWPGNVRELENILGRAIIFmnynetyIDVHHLPPLhNEEQVESk 625
Cdd:PRK15424 411 LAESFLKQslaaLSAPFSAALrQGLQQCETL-LLHYDWPGNVRELRNLMERLALF-------LSVEPTPDL-TPQFLQL- 480
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1068632266 626 qshLLPELEEKPLEHLVTEFEGNIIYEYLERFDGNKTQTAKALGISVRNLYYKLEK 681
Cdd:PRK15424 481 ---LLPELARESAKTPAPRLLAATLQQALERFNGDKTAAANYLGISRTTLWRRLKA 533
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
229-682 |
3.03e-100 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 316.75 E-value: 3.03e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 229 VTDLKEIQTL--------LEAIINSSEEAISVVDEKGRGLVINPAYTKLTGLTEEDIIGKPATtDIVEGESMHMKVLRTR 300
Cdd:COG3283 64 VTDVRTVPFMpserehleLDALLEALPDPVFSIDLKGKIELANPAALSLLGLSEEELIGQPLS-ELLKGFNFSRWLESNE 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 301 RAVRGIHMKIGQkkRDVIVNVAPVIV-----DGILKGSVGVIRDVSEIQkltnelnRARQIIRTLEAKySFDDIVGNSDE 375
Cdd:COG3283 143 PRPQSERVVING--QDYLADILPIYLpdeegKSILAGAVVTLKSAARLG-------EQLQALQVNDDS-GFDHIVASSPK 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 376 TTAAIEQAKLGANTPATVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELFGYEEGAFsGAKRGGKR 455
Cdd:COG3283 213 MRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAF-GNAREGKK 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 456 GFFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIP 535
Cdd:COG3283 292 GLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLYYRLNVLT 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 536 IQIPSLRQRKGDIPTIADRLIQKINQDYGRNVEGLTDSAVLYLQSYEWPGNVRELENILGRAIIFMNYNEtyIDVHH--L 613
Cdd:COG3283 372 LTLPPLRERKSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLEGDE--LTPEDlqL 449
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1068632266 614 PplhneeQVESKQShLLPELEEKPLEHLVTEFEGNIiyeyLERFDGN---KTQTAKALGIS---VRNlyyKLEKY 682
Cdd:COG3283 450 P------EYAASAG-LLDDLLEGSLDEIVKRFERSL----LRRLYPSypsTRKLAKRLGVShtaIAN---KLREY 510
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
336-682 |
8.27e-100 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 313.71 E-value: 8.27e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 336 VIRDVSEIQKLTNELnraRQIIRTLEAKYSFDDIVGNSDETTAAIEQAKLGANTPATVLLRGESGTGKELFAHAIHNGSN 415
Cdd:PRK11361 115 IVQRALQLQSMKKEI---RHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSR 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 416 RKYNKFVRVNCAAISETLLESELFGYEEGAFSGAKrGGKRGFFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEIVKVG 495
Cdd:PRK11361 192 RAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQ-TLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIG 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 496 GTKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDIPTIADRLIQKINQDYGRNVEGLTDSAV 575
Cdd:PRK11361 271 GHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAM 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 576 LYLQSYEWPGNVRELENILGRAIIfMNYNETyIDVHHLPPLHNEEQVESKQSHLLPElEEKPLEHLVTEFEGNIIYEYLE 655
Cdd:PRK11361 351 SLLTAWSWPGNIRELSNVIERAVV-MNSGPI-IFSEDLPPQIRQPVCNAGEVKTAPV-GERNLKEEIKRVEKRIIMEVLE 427
|
330 340
....*....|....*....|....*..
gi 1068632266 656 RFDGNKTQTAKALGISVRNLYYKLEKY 682
Cdd:PRK11361 428 QQEGNRTRTALMLGISRRALMYKLQEY 454
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
369-537 |
2.12e-97 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 297.01 E-value: 2.12e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 369 IVGNSDETTAAIEQAKLGANTPATVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELFGYEEGAFSG 448
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 449 AKRGGKrGFFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLY 528
Cdd:pfam00158 81 ADSDRK-GLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLY 159
|
....*....
gi 1068632266 529 YRLNKIPIQ 537
Cdd:pfam00158 160 YRLNVIPIE 168
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
335-681 |
3.87e-96 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 305.94 E-value: 3.87e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 335 GVIRDVSEIQKLTNELNRARQIIRTL-EAKYSFDDIVGNSDETTAAIEQAKLGANTPATVLLRGESGTGKELFAHAIHNG 413
Cdd:PRK05022 154 ATLRNALLIEQLESQAELPQDVAEFLrQEALKEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 414 SNRKYNKFVRVNCAAISETLLESELFGYEEGAFSGA--KRGGKrgfFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEI 491
Cdd:PRK05022 234 SPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAisNRSGK---FELADGGTLFLDEIGELPLALQAKLLRVLQYGEI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 492 VKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDIPTIADRLIQKINQDYG-RNVeGL 570
Cdd:PRK05022 311 QRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGlRSL-RL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 571 TDSAVLYLQSYEWPGNVRELENILGRAIIFM----NYNETYIDVHHLPPLHNEEQVESKQSHLLPELEEKPLEHLVTEFE 646
Cdd:PRK05022 390 SPAAQAALLAYDWPGNVRELEHVISRAALLArargAGRIVTLEAQHLDLPAEVALPPPEAAAAPAAVVSQNLREATEAFQ 469
|
330 340 350
....*....|....*....|....*....|....*
gi 1068632266 647 GNIIYEYLERFDGNKTQTAKALGISVRNLyYKLEK 681
Cdd:PRK05022 470 RQLIRQALAQHQGNWAAAARALELDRANL-HRLAK 503
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
360-681 |
7.26e-91 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 292.92 E-value: 7.26e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 360 LEAKYSFDDIVGNSdettAAIEQAK----LGANTPATVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLE 435
Cdd:TIGR02329 205 LRTRYRLDDLLGAS----APMEQVRalvrLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 436 SELFGYEEGAFSGAKRGGKRGFFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLE 515
Cdd:TIGR02329 281 AELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALT 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 516 KAILEGKFREDLYYRLNKIPIQIPSLRQRKGDIPTIADRLIQKinqdyGRNVEGLTDSAVL---------YLQSYEWPGN 586
Cdd:TIGR02329 361 TAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQ-----AAAALRLPDSEAAaqvlagvadPLQRYPWPGN 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 587 VRELENILGRAIIFMNYNETYIDVHHLPPLHNEEQVESKQSHLLPELEEKPLEHLVTEfegnIIYEYLERFDGNKTQTAK 666
Cdd:TIGR02329 436 VRELRNLVERLALELSAMPAGALTPDVLRALAPELAEASGKGKTSALSLRERSRVEAL----AVRAALERFGGDRDAAAK 511
|
330
....*....|....*
gi 1068632266 667 ALGISVRNLYYKLEK 681
Cdd:TIGR02329 512 ALGISRTTLWRRLKA 526
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
365-682 |
2.34e-86 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 278.17 E-value: 2.34e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 365 SFDDIVGNSDETTAAIEQAKLGANTPATVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELFGYEEG 444
Cdd:TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKG 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 445 AFSGAKRGgKRGFFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFR 524
Cdd:TIGR02915 217 AFTGAVKQ-TLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFR 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 525 EDLYYRLNKIPIQIPSLRQRKGDIPTIADRLIQKINQDYGRNVEGLTDSAVLYLQSYEWPGNVRELENILGRAIIFMNYN 604
Cdd:TIGR02915 296 EDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGN 375
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1068632266 605 ETYIDVHHLPPLHNEEQVESKQshlLPELEEKPlehlvtefEGNIIYEYLERFDGNKTQTAKALGISVRNLYYKLEKY 682
Cdd:TIGR02915 376 QITAEDLGLDARERAETPLEVN---LREVRERA--------EREAVRKAIARVDGNIARAAELLGITRPTLYDLMKKH 442
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
344-681 |
1.99e-85 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 275.76 E-value: 1.99e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 344 QKLTNELNRARQI-IRTLEAKYSFDDIVGNSDETTAAIEQAKLGANTPATVLLRGESGTGKELFAHAIHNGSNRKYNKFV 422
Cdd:PRK10365 115 ATLEKALAHTHSIdAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLV 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 423 RVNCAAISETLLESELFGYEEGAFSGAKRGgKRGFFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEIVKVGGTKAIPI 502
Cdd:PRK10365 195 TLNCAALNESLLESELFGHEKGAFTGADKR-REGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISV 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 503 NVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDIPTIADRLIQKINQDYGRNVEGLTDSAVLYLQSYE 582
Cdd:PRK10365 274 DVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 583 WPGNVRELENILGRAIIFMNYNetYIDVHHLPplhneEQVESKQSHLLPELEEKPLehlvTEFEGNIIYEYLERFDGNKT 662
Cdd:PRK10365 354 WPGNIRELENAVERAVVLLTGE--YISERELP-----LAIASTPIPLGQSQDIQPL----VEVEKEVILAALEKTGGNKT 422
|
330
....*....|....*....
gi 1068632266 663 QTAKALGISVRNLYYKLEK 681
Cdd:PRK10365 423 EAARQLGITRKTLLAKLSR 441
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
387-679 |
1.72e-79 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 260.83 E-value: 1.72e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 387 ANTPATVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELFGYEEGAFSGA-KRggKRGFFEEANNGS 465
Cdd:TIGR01818 154 SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGAnTR--RQGRFEQADGGT 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 466 IFLDEIGELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRK 545
Cdd:TIGR01818 232 LFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERR 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 546 GDIPTIADRLIQKINQDYGRNVEGLTDSAVLYLQSYEWPGNVRELENiLGRAIIFMnYNETYIDVHHLPP---------- 615
Cdd:TIGR01818 312 EDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLEN-LCRWLTVM-ASGDEVLVSDLPAelaltgrpas 389
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1068632266 616 -------LHNEEQVESKQSHLLPELEEKPLEHLVTEFEGNIIYEYLERFDGNKTQTAKALGISVRNLYYKL 679
Cdd:TIGR01818 390 apdsdgqDSWDEALEAWAKQALSRGEQGLLDRALPEFERPLLEAALQHTRGHKQEAAALLGWGRNTLTRKL 460
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
389-683 |
7.15e-79 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 255.16 E-value: 7.15e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 389 TPATVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESelfgyeegafsgakrggkrgffeeanngsifl 468
Cdd:COG3604 114 SLAAVAILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES-------------------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 469 deigelsantqakllrvLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDI 548
Cdd:COG3604 162 -----------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLRERREDI 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 549 PTIADRLIQKINQDYGRNVEGLTDSAVLYLQSYEWPGNVRELENILGRAIIFMNYNEtyIDVHHLPPLHNEEqveskqsh 628
Cdd:COG3604 225 PLLAEHFLEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGV--LDADDLAPGSREA-------- 294
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1068632266 629 llpeleekplehlVTEFEGNIIYEYLERFDGNKTQTAKALGISVRNLYYKLEKYD 683
Cdd:COG3604 295 -------------LEEVEREHILEALERTGGNIAGAARLLGLTPSTLRSRMKKLG 336
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
338-623 |
2.89e-72 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 247.44 E-value: 2.89e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 338 RDVSEIQKLTNELNRARQiirtleakySFDDIVGNSDETTAAIEQAKLGANTPATVLLRGESGTGKELFAHAIHNGSNRK 417
Cdd:PRK15429 356 RLVDENLALTEQLNNVDS---------EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 418 YNKFVRVNCAAISETLLESELFGYEEGAFSGAKrGGKRGFFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEIVKVGGT 497
Cdd:PRK15429 427 NRRMVKMNCAAMPAGLLESDLFGHERGAFTGAS-AQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 498 KAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDIPTIADRLIQKINQDYGRNVEGLTDSAVLY 577
Cdd:PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRT 585
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1068632266 578 LQSYEWPGNVRELENILGRAIIFMNYN-------ETYIDVHHLPPLHNEEQVE 623
Cdd:PRK15429 586 LSNMEWPGNVRELENVIERAVLLTRGNvlqlslpDITLPEPETPPAATVVAQE 638
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
239-683 |
1.34e-71 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 241.51 E-value: 1.34e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 239 LEAIINSSEEAISVVDEKGRGLVINPAYTKLTGLTEEDIIGKPATTdIVEGESMHMKVLRTRRAVRGIHMKIgqKKRDVI 318
Cdd:PRK10820 82 LSALLEALPEPVLSIDMKGKVELANPASCQLFGQSEEKLRNHTAAQ-LINGFNFLRWLESEPQDSHNEHVVI--NGQDFL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 319 VNVAPVIVDG-----ILKGSVGVIRDVSEI----QKLTNELNRArqiirtleakysFDDIVGNSDETTAAIEQAKLGANT 389
Cdd:PRK10820 159 MEITPVYLQDendqhVLVGAVVMLRSTARMgrqlQNLAVNDDSA------------FSQIVAVSPKMRQVVEQARKLAML 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 390 PATVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELFGYEEGAFSGAKRGgKRGFFEEANNGSIFLD 469
Cdd:PRK10820 227 DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEG-KKGFFEQANGGSVLLD 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 470 EIGELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDIP 549
Cdd:PRK10820 306 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIM 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 550 TIADRLIQKINQDYGRNVEGLTDSAVLYLQSYEWPGNVRELENILGRAIifmnyneTYIDVHHLPPlhneeqveskQSHL 629
Cdd:PRK10820 386 PLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRAL-------TQLEGYELRP----------QDIL 448
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1068632266 630 LPELE----------EKPLEHLVTEFEGNIiyeyLERFDGNKTQT---AKALGISVRNLYYKLEKYD 683
Cdd:PRK10820 449 LPDYDaavavgedamEGSLDEITSRFERSV----LTRLYRNYPSTrklAKRLGVSHTAIANKLREYG 511
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
367-679 |
3.41e-71 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 238.20 E-value: 3.41e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 367 DDIVGNSDETTAAIEQAKLGANTPATVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELFGYEEGAF 446
Cdd:PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAF 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 447 SGAKrGGKRGFFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFRED 526
Cdd:PRK15115 214 TGAV-SNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFRED 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 527 LYYRLNKIPIQIPSLRQRKGDIPTIADRLIQKINQDYGRNVEGLTDSAVLYLQSYEWPGNVRELENILGRAIIFMNynet 606
Cdd:PRK15115 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTS---- 368
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1068632266 607 yidvhhlPPLHNE---EQVESKQSHLLPELEEKPlehlvTEFEGNIIYEYLERFDGNKTQTAKALGISvRNLYYKL 679
Cdd:PRK15115 369 -------SPVISDalvEQALEGENTALPTFVEAR-----NQFELNYLRKLLQITKGNVTHAARMAGRN-RTEFYKL 431
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
392-681 |
1.13e-69 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 234.76 E-value: 1.13e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 392 TVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELFGYEEGAFSGAKRGgKRGFFEEANNGSIFLDEI 471
Cdd:PRK10923 163 SVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTI-RQGRFEQADGGTLFLDEI 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 472 GELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDIPTI 551
Cdd:PRK10923 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRL 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 552 ADRLIQKINQDYGRNVEGLTDSAVLYLQSYEWPGNVRELENILgRAIIFMNYNETYIdVHHLPPLHNEEQVESKQSHLLP 631
Cdd:PRK10923 322 ARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC-RWLTVMAAGQEVL-IQDLPGELFESTVPESTSQMQP 399
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1068632266 632 ELEEKPLEHLVT----------------EFEGNIIYEYLERFDGNKTQTAKALGISVRNLYYKLEK 681
Cdd:PRK10923 400 DSWATLLAQWADralrsghqnllseaqpELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
201-683 |
1.12e-62 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 220.32 E-value: 1.12e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 201 PILKEGGEVQGAFAIFKDI--TEVVDL------AEEVTDLKEIQTLLE----------AIINSSEEAISVVDEKGRGLVI 262
Cdd:PRK11388 149 PVFDSKGRLTGTIALACPVeqTSAADLpltlsiAREVGNLLLTDSLLAesnrhlnqlnALLESMDDGVIAWDEQGNLQFL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 263 NPAYTKLTGLTEEDIIGKPattdIVEGESMHMKVLRTRRAVRGIHMK---IGQKKR--DVIVNVAPvIVDGILKGSVGVI 337
Cdd:PRK11388 229 NAQAARLLRLDATASQGRA----ITELLTLPAVLQQAIKQAHPLKHVevtFESQGQfiDAVITLKP-IIEGQGTSFILLL 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 338 RDVSEIQKL-TNELNRARqiirtleakYSFDDIVGNSDETTAAIEQAKLGANTPATVLLRGESGTGKELFAHAIHNGSNR 416
Cdd:PRK11388 304 HPVEQMRQLmTSQLGKVS---------HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 417 KYNKFVRVNCAAISETLLESELFGYEEGAfSGAKRGGKrgfFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEIVKVGG 496
Cdd:PRK11388 375 AAGPYIAVNCQLYPDEALAEEFLGSDRTD-SENGRLSK---FELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDS 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 497 TKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDIPTIADRLIQKINQDYGRNVEgLTDSAVL 576
Cdd:PRK11388 451 RRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLK-IDDDALA 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 577 YLQSYEWPGNVRELENILGRaiIFMNYNETYIDVHHLPplhneEQVESKQSHLlpELEEKPLEHLVT--EFEGNIIYEYL 654
Cdd:PRK11388 530 RLVSYRWPGNDFELRSVIEN--LALSSDNGRIRLSDLP-----EHLFTEQATD--DVSATRLSTSLSlaELEKEAIINAA 600
|
490 500
....*....|....*....|....*....
gi 1068632266 655 ERFDGNKTQTAKALGISVRNLYYKLEKYD 683
Cdd:PRK11388 601 QVCGGRIQEMAALLGIGRTTLWRKMKQHG 629
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
367-683 |
1.20e-58 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 201.05 E-value: 1.20e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 367 DDIVGNSDETTAAIEQ----AKLgaNTPatVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELFGYE 442
Cdd:PRK11608 6 DNLLGEANSFLEVLEQvsrlAPL--DKP--VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 443 EGAFSGAKrggKR--GFFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILE 520
Cdd:PRK11608 82 AGAFTGAQ---KRhpGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 521 GKFREDLYYRLNKIPIQIPSLRQRKGDIPTIADRLIQKINQDYGRNV-EGLTDSAVLYLQSYEWPGNVRELENILGRAII 599
Cdd:PRK11608 159 GKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLfPGFTERARETLLNYRWPGNIRELKNVVERSVY 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 600 FMNYNETYIDVHHLPPLH---NEEQVESKQSHLLPELeekPLE--HLVTEFEGNIIYEYLERFDGNKTQTAKALGISVRN 674
Cdd:PRK11608 239 RHGTSEYPLDNIIIDPFKrrpAEEAIAVSETTSLPTL---PLDlrEWQHQQEKELLQRSLQQAKFNQKRAAELLGLTYHQ 315
|
....*....
gi 1068632266 675 LYYKLEKYD 683
Cdd:PRK11608 316 LRALLKKHQ 324
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
112-350 |
8.02e-28 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 112.81 E-value: 8.02e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 112 RLEEQTQQGELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIP------TSKLLRIIRTKQIEVNY 185
Cdd:COG2202 5 ALEESERRLRALVESSPDAIIITDLDGRILYVNPAFERLTGYSAEELLGKTLRDLLPpedddeFLELLRAALAGGGVWRG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 186 ELTLE--NGKKII--TTRIPILKEGGEVQGAFAIFKDITEVVdLAEEvtDLKEIQTLLEAIINSSEEAISVVDEKGRGLV 261
Cdd:COG2202 85 ELRNRrkDGSLFWveLSISPVRDEDGEITGFVGIARDITERK-RAEE--ALRESEERLRLLVENAPDGIFVLDLDGRILY 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 262 INPAYTKLTGLTEEDIIGKPATTDIVEGESMHM-----KVLRTRRAVRGIHMKIGQKKRDVI---VNVAPVIVDGILKGS 333
Cdd:COG2202 162 VNPAAEELLGYSPEELLGKSLLDLLHPEDRERLlellrRLLEGGRESYELELRLKDGDGRWVwveASAVPLRDGGEVIGV 241
|
250
....*....|....*..
gi 1068632266 334 VGVIRDVSEIQKLTNEL 350
Cdd:COG2202 242 LGIVRDITERKRAEEAL 258
|
|
| KinE |
COG5809 |
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome ... |
112-353 |
9.35e-25 |
|
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 444511 [Multi-domain] Cd Length: 489 Bit Score: 108.52 E-value: 9.35e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 112 RLEEQTQQGELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPTS------KLLRIIRTKQIEVNY 185
Cdd:COG5809 9 QLRKSEQRFRSLFENAPDAILILDLEGKILKVNPAAERIFGYTEDELLGTNILDFLHPDdekelrEILKLLKEGESRDEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 186 ELTLENG----KKIITTRIPILKEGGEVQGAFAIFKDITEVVDLAEEvtdLKEIQTLLEAIINSSEEAISVVDEKGRGLV 261
Cdd:COG5809 89 EFELRHKngkrLEFSSKLSPIFDQNGDIEGMLAISRDITERKRMEEA---LRESEEKFRLIFNHSPDGIIVTDLDGRIIY 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 262 INPAYTKLTGLTEEDIIGKPATT-----DIVEGESMHMKVLRTRRAVRG---IHMKIGQkKRDVIVNVAPVIVDGILKGS 333
Cdd:COG5809 166 ANPAACKLLGISIEELIGKSILElihsdDQENVAAFISQLLKDGGIAQGevrFWTKDGR-WRLLEASGAPIKKNGEVDGI 244
|
250 260
....*....|....*....|
gi 1068632266 334 VGVIRDVSEIQKLTNELNRA 353
Cdd:COG5809 245 VIIFRDITERKKLEELLRKS 264
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
359-614 |
5.08e-24 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 107.89 E-value: 5.08e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 359 TLEAKYSFDDIVGNSDETTAAIEQAKL-------GANTpatvLLRGESGTGKELFAHAIHN--GSNRKYNK---FVRVNC 426
Cdd:COG1221 96 NEEEEDPFDNLIGANGSLKNAIEQAKAailyppkGLHT----LILGPTGVGKSFFAELMYEyaIEIGVLPEdapFVVFNC 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 427 AAISET--LLESELFGYEEGAFSGAKRgGKRGFFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEIVKVGGT-KAIPIN 503
Cdd:COG1221 172 ADYANNpqLLMSQLFGYVKGAFTGADK-DKEGLIEKADGGILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGETeKTRKAN 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 504 VRVIAATHVNLEKAILEgKFredlyyrLNKIP--IQIPSLRQRkgdipTIADR--LI--------QKINqdygRNVEgLT 571
Cdd:COG1221 251 VRIIFATTEDPESSLLK-TF-------LRRIPmvIKLPSLEER-----SLEERleLIkhffkeeaKRLN----KPIK-VS 312
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1068632266 572 DSAVLYLQSYEWPGNVRELENIL----GRAiiFMNY-----NETYIDVHHLP 614
Cdd:COG1221 313 KEVLKALLLYDCPGNIGQLKSDIqlacAKA--FLNYitnkkEEIEITLSDLP 362
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
370-534 |
7.47e-21 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 89.51 E-value: 7.47e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 370 VGNSDETTAAIEQAKLgaNTPATVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELFGYEEgafsga 449
Cdd:cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFL------ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 450 kRGGKRGFFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEIvkvggTKAIPINVRVIAATHVNlekaiLEGKFREDLYY 529
Cdd:cd00009 73 -VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLND-----LRIDRENVRVIGATNRP-----LLGDLDRALYD 141
|
....*
gi 1068632266 530 RLNKI 534
Cdd:cd00009 142 RLDIR 146
|
|
| sensory_box |
TIGR00229 |
PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain ... |
236-350 |
3.70e-17 |
|
PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. [Regulatory functions, Small molecule interactions]
Pssm-ID: 272971 [Multi-domain] Cd Length: 124 Bit Score: 78.10 E-value: 3.70e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 236 QTLLEAIINSSEEAISVVDEKGRGLVINPAYTKLTGLTEEDIIGKPATTDIVEGES-----MHMKVLRTRRAVRGIHMKI 310
Cdd:TIGR00229 2 EERYRAIFESSPDAIIVIDLEGNILYVNPAFEEIFGYSAEELIGRNVLELIPEEDReevreRIERRLEGEPEPVSEERRV 81
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1068632266 311 GQK---KRDVIVNVAPVIVDGILKGSVGVIRDVSEIQKLTNEL 350
Cdd:TIGR00229 82 RRKdgsEIWVEVSVSPIRTNGGELGVVGIVRDITERKEAEEAL 124
|
|
| sensory_box |
TIGR00229 |
PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain ... |
121-228 |
4.46e-15 |
|
PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. [Regulatory functions, Small molecule interactions]
Pssm-ID: 272971 [Multi-domain] Cd Length: 124 Bit Score: 71.94 E-value: 4.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 121 ELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIP------TSKLLRIIRTKQIEVNYELTL---EN 191
Cdd:TIGR00229 6 RAIFESSPDAIIVIDLEGNILYVNPAFEEIFGYSAEELIGRNVLELIPeedreeVRERIERRLEGEPEPVSEERRvrrKD 85
|
90 100 110
....*....|....*....|....*....|....*...
gi 1068632266 192 GKKI-ITTRIPILKEGGEVQGAFAIFKDITEVVDLAEE 228
Cdd:TIGR00229 86 GSEIwVEVSVSPIRTNGGELGVVGIVRDITERKEAEEA 123
|
|
| PRK11360 |
PRK11360 |
two-component system sensor histidine kinase AtoS; |
92-229 |
1.37e-14 |
|
two-component system sensor histidine kinase AtoS;
Pssm-ID: 236901 [Multi-domain] Cd Length: 607 Bit Score: 77.32 E-value: 1.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 92 PGDIAKIVTGLAhekeeliGRLEEQTQQGELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPT-- 169
Cdd:PRK11360 243 LGEISQAINNLA-------QALRETRSLNELILESIADGVIAIDRQGKITTMNPAAEVITGLQRHELVGKPYSELFPPnt 315
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1068632266 170 ---SKLLRIIRTKQIEVNYELTLEN---GKKIITTRIPILKEGGEVQGAFAIFKDITEVVDLAEEV 229
Cdd:PRK11360 316 pfaSPLLDTLEHGTEHVDLEISFPGrdrTIELSVSTSLLHNTHGEMIGALVIFSDLTERKRLQRRV 381
|
|
| KinA |
COG5805 |
Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle ... |
107-352 |
1.37e-14 |
|
Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 444507 [Multi-domain] Cd Length: 496 Bit Score: 76.69 E-value: 1.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 107 EELIGRLEEQTQQG-ELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPTSKLLRIIRTKQ----- 180
Cdd:COG5805 22 NNEVLRMAIEITEElETILENLPDAIIAVNREGKVIYINPAMEKLLGYTSEEIIGKTIFDFLEKEYHYRVKTRIErlqkg 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 181 -IEVNYELTLE-NGKKIITTRIPILKEGGEVQGAFAIFKDITEVVDLAEEvtdLKEIQTLLEAIINSSEEAISVVDEKGR 258
Cdd:COG5805 102 yDVVMIEQIYCkDGELIYVEVKLFPIYNQNGQAAILALRDITKKKKIEEI---LQEQEERLQTLIENSPDLICVIDTDGR 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 259 GLVINPAYTKLTGLTEEDIIGKPA---TTDIVEGESMHMKVLRTRRAVRGI--HMKIGQKKRDVI--VNVAPVI-VDGIL 330
Cdd:COG5805 179 ILFINESIERLFGAPREELIGKNLlelLHPCDKEEFKERIESITEVWQEFIieREIITKDGRIRYfeAVIVPLIdTDGSV 258
|
250 260
....*....|....*....|..
gi 1068632266 331 KGSVGVIRDVSEIQKLTNELNR 352
Cdd:COG5805 259 KGILVILRDITEKKEAEELMAR 280
|
|
| PRK11086 |
PRK11086 |
sensory histidine kinase DcuS; Provisional |
95-233 |
1.38e-14 |
|
sensory histidine kinase DcuS; Provisional
Pssm-ID: 236839 [Multi-domain] Cd Length: 542 Bit Score: 76.88 E-value: 1.38e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 95 IAKIVTGLahEKEElIGRLEEQTQQgelILNSTHDGMIVIDREGQVRLFNKSAERIIGYKK---EEAIGKYILEVIPTSK 171
Cdd:PRK11086 204 LKRILFGL--EPYE-ISTLFEQRQA---MLQSIKEGVIAVDDRGEVTLINDEAKRLFNYKKgleDDPLGTDVESWMPVSR 277
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1068632266 172 LLRIIRTKQIEVNYELTLeNGKKIITTRIPILKeGGEVQGAFAIFKDITEVVDLAEEVTDLK 233
Cdd:PRK11086 278 LKEVLRTGTPRRDEEINI-NGRLLLTNTVPVRV-NGEIIGAIATFRDKTEVRQLAQRLDGMV 337
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
112-229 |
1.56e-14 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 75.65 E-value: 1.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 112 RLEEQTQQGELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPTSKLL-----RIIRTKQIEVNYE 186
Cdd:COG3852 1 ALRESEELLRAILDSLPDAVIVLDADGRITYVNPAAERLLGLSAEELLGRPLAELFPEDSPLrelleRALAEGQPVTERE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1068632266 187 LTLE--NGKKII--TTRIPILKEGGEvQGAFAIFKDITEVVDLAEEV 229
Cdd:COG3852 81 VTLRrkDGEERPvdVSVSPLRDAEGE-GGVLLVLRDITERKRLEREL 126
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
370-541 |
1.84e-14 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 70.83 E-value: 1.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 370 VGNSDETTAAIEQAKLGANTPATVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESelfgyeegafsga 449
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELLEQ------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 450 krggkrgffeeANNGSIFLDEIGELSANTQAKLLRVLQEKEivkvggtkaiPINVRVIAATHVNLEKAILEGKFREDLYY 529
Cdd:pfam14532 68 -----------AKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYF 126
|
170
....*....|..
gi 1068632266 530 RLNKIPIQIPSL 541
Cdd:pfam14532 127 ELSALRLHVPPL 138
|
|
| PAS |
pfam00989 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
118-219 |
2.23e-14 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395786 [Multi-domain] Cd Length: 113 Bit Score: 69.75 E-value: 2.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 118 QQGELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPT-------SKLLRIIRTKQIEVNYELTLE 190
Cdd:pfam00989 1 EDLRAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEeddaevaELLRQALLQGEESRGFEVSFR 80
|
90 100 110
....*....|....*....|....*....|...
gi 1068632266 191 --NGKKII--TTRIPILKEGGEVQGAFAIFKDI 219
Cdd:pfam00989 81 vpDGRPRHveVRASPVRDAGGEILGFLGVLRDI 113
|
|
| KinE |
COG5809 |
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome ... |
105-255 |
6.23e-14 |
|
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 444511 [Multi-domain] Cd Length: 489 Bit Score: 74.63 E-value: 6.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 105 EKEELIGRLEEQTQQGELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIP------TSKLLRIIRT 178
Cdd:COG5809 128 ERKRMEEALRESEEKFRLIFNHSPDGIIVTDLDGRIIYANPAACKLLGISIEELIGKSILELIHsddqenVAAFISQLLK 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 179 KQIEVNYE---LTLENGKKIITTRIPILKEGGEVQGAFAIFKDITEvvdlaeevtdLKEIQTLLEAIinsseEAISVVDE 255
Cdd:COG5809 208 DGGIAQGEvrfWTKDGRWRLLEASGAPIKKNGEVDGIVIIFRDITE----------RKKLEELLRKS-----EKLSVVGE 272
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
107-235 |
2.86e-12 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 69.22 E-value: 2.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 107 EELIGRLEEQTQQGELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPTSKLLRIIRT---KQIEV 183
Cdd:COG5000 79 KEQREELEERRRYLETILENLPAGVIVLDADGRITLANPAAERLLGIPLEELIGKPLEELLPELDLAELLREaleRGWQE 158
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1068632266 184 NYELTLENGKKIITTRIPIlkeggEVQGAFAIFKDITEVVDlAEEVTDLKEI 235
Cdd:COG5000 159 EIELTRDGRRTLLVRASPL-----RDDGYVIVFDDITELLR-AERLAAWGEL 204
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
231-355 |
1.26e-11 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 66.79 E-value: 1.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 231 DLKEIQTLLEAIINSSEEAISVVDEKGRGLVINPAYTKLTGLTEEDIIGKPATTDIVEGESMHMKVLRTRRAVRGIH--- 307
Cdd:COG3852 1 ALRESEELLRAILDSLPDAVIVLDADGRITYVNPAAERLLGLSAEELLGRPLAELFPEDSPLRELLERALAEGQPVTere 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1068632266 308 ---MKIGQKKRDVIVNVAPVIVDGILKGSVGVIRDVSEIQKLTNELNRARQ 355
Cdd:COG3852 81 vtlRRKDGEERPVDVSVSPLRDAEGEGGVLLVLRDITERKRLERELRRAEK 131
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
389-531 |
1.26e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 63.16 E-value: 1.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 389 TPATVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLES-ELFGYEEGAFSGAKRGGKRGFFEEANNGS-- 465
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlLLIIVGGKKASGSGELRLRLALALARKLKpd 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1068632266 466 -IFLDEIGELSANTQAKLLRVLQEkeiVKVGGTKAIPINVRVIAATH--VNLEKAILEGKFREDLYYRL 531
Cdd:smart00382 81 vLILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLLL 146
|
|
| PAS |
smart00091 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
118-180 |
2.38e-11 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.
Pssm-ID: 214512 Cd Length: 67 Bit Score: 59.72 E-value: 2.38e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1068632266 118 QQGELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPTSKLLRIIRTKQ 180
Cdd:smart00091 1 ERLRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELIHPEDRERVQEALQ 63
|
|
| PAS |
pfam00989 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
237-340 |
3.20e-11 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395786 [Multi-domain] Cd Length: 113 Bit Score: 60.89 E-value: 3.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 237 TLLEAIINSSEEAISVVDEKGRGLVINPAYTKLTGLTEEDIIGKPATTDIVEGESMHM-----KVLRTRRAVRGIHMKIG 311
Cdd:pfam00989 1 EDLRAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEEDDAEVaellrQALLQGEESRGFEVSFR 80
|
90 100 110
....*....|....*....|....*....|...
gi 1068632266 312 ---QKKRDVIVNVAPVI-VDGILKGSVGVIRDV 340
Cdd:pfam00989 81 vpdGRPRHVEVRASPVRdAGGEILGFLGVLRDI 113
|
|
| PAS_4 |
pfam08448 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
124-224 |
9.26e-11 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain is associated to signalling systems and works as a signal sensor domain. It recognizes differently substituted aromatic hydrocarbons, oxygen, different dodecanoic acids, autoinducers, 3,5-dimethyl-pyrazin-2-ol and N-alanyl-aminoacetone (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 312075 [Multi-domain] Cd Length: 110 Bit Score: 59.35 E-value: 9.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 124 LNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPT-------SKLLRIIRTKQIEVNYELTLENGKK-- 194
Cdd:pfam08448 1 LDSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGKTLAELLPPedaarleRALRRALEGEEPIDFLEELLLNGEErh 80
|
90 100 110
....*....|....*....|....*....|
gi 1068632266 195 IITTRIPILKEGGEVQGAFAIFKDITEVVD 224
Cdd:pfam08448 81 YELRLTPLRDPDGEVIGVLVISRDITERRR 110
|
|
| CitA |
COG3290 |
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ... |
161-360 |
9.90e-11 |
|
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];
Pssm-ID: 442519 [Multi-domain] Cd Length: 389 Bit Score: 64.10 E-value: 9.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 161 KYILEVIPTSKLLRIIRTKQIEVNYELTLENGKKIITTRIPILkEGGEVQGAFAIFKDITEVVDLAEEVTDLKEIQTLLE 240
Cdd:COG3290 6 LLLLLLLILLILILILLLLLLIILLLILLLVLLLLLFLLFVII-LLLLLLILLLILLLLLLLLLAALLLKLLEEIARLVE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 241 ---AIINSSEEAISVVDEKGRGLVINPAYTKLTGLteeDIIGKPATTDIVEgesmhmkVLRTRRAVRGIHMKigqkKRDV 317
Cdd:COG3290 85 ereAVLESIREGVIAVDRDGRITLINDAARRLLGL---DAIGRPIDEVLAE-------VLETGERDEEILLN----GRVL 150
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1068632266 318 IVNVAPVIVDGILKGSVGVIRDVSEIQKLTNELNRARQIIRTL 360
Cdd:COG3290 151 VVNRVPIRDDGRVVGAVATFRDRTELERLEEELEGVKELAEAL 193
|
|
| PAS_9 |
pfam13426 |
PAS domain; This domain is found in many signalling proteins in which it functions as a sensor ... |
129-221 |
1.86e-10 |
|
PAS domain; This domain is found in many signalling proteins in which it functions as a sensor domain. It recognizes FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 463873 [Multi-domain] Cd Length: 93 Bit Score: 57.86 E-value: 1.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 129 DGMIVIdregqvrlFNKSAERIIGYKKEEAIGKYILEVIPT----SKLLRIIRTKQIEVNYELTL--ENGKKIIT--TRI 200
Cdd:pfam13426 1 DGRIIY--------VNDAALRLLGYTREELLGKSITDLFAEpedsERLREALREGKAVREFEVVLyrKDGEPFPVlvSLA 72
|
90 100
....*....|....*....|.
gi 1068632266 201 PILKEGGEVQGAFAIFKDITE 221
Cdd:pfam13426 73 PIRDDGGELVGIIAILRDITE 93
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
227-360 |
2.35e-10 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 61.58 E-value: 2.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 227 EEVTDLKEIQTLLEAIINSSEEAISVVDEKGRGLVINPAYTKLTGLTEEDIIGKPATTDIVEG--ESMHMKVLRTRRAVR 304
Cdd:COG2202 1 TAEEALEESERRLRALVESSPDAIIITDLDGRILYVNPAFERLTGYSAEELLGKTLRDLLPPEddDEFLELLRAALAGGG 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1068632266 305 GIHMKIGQKKRD-----VIVNVAPVI-VDGILKGSVGVIRDVSEIQKLTNELNRARQIIRTL 360
Cdd:COG2202 81 VWRGELRNRRKDgslfwVELSISPVRdEDGEITGFVGIARDITERKRAEEALRESEERLRLL 142
|
|
| KinA |
COG5805 |
Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle ... |
105-221 |
9.97e-10 |
|
Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 444507 [Multi-domain] Cd Length: 496 Bit Score: 61.29 E-value: 9.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 105 EKEELIGRLEEQTQQGELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPTSKLLRIIRT------ 178
Cdd:COG5805 144 KKKKIEEILQEQEERLQTLIENSPDLICVIDTDGRILFINESIERLFGAPREELIGKNLLELLHPCDKEEFKERiesite 223
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1068632266 179 --KQIEVNYELTLENGKKIIT--TRIPILKEGGEVQGAFAIFKDITE 221
Cdd:COG5805 224 vwQEFIIEREIITKDGRIRYFeaVIVPLIDTDGSVKGILVILRDITE 270
|
|
| PAS |
cd00130 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
127-219 |
2.08e-09 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Pssm-ID: 238075 [Multi-domain] Cd Length: 103 Bit Score: 55.33 E-value: 2.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 127 THDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPTSKLLRIIRT--------KQIEVNYELTLENGKKII-- 196
Cdd:cd00130 1 LPDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERlenllsggEPVTLEVRLRRKDGSVIWvl 80
|
90 100
....*....|....*....|...
gi 1068632266 197 TTRIPILKEGGEVQGAFAIFKDI 219
Cdd:cd00130 81 VSLTPIRDEGGEVIGLLGVVRDI 103
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
644-681 |
1.75e-08 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 50.47 E-value: 1.75e-08
10 20 30
....*....|....*....|....*....|....*...
gi 1068632266 644 EFEGNIIYEYLERFDGNKTQTAKALGISVRNLYYKLEK 681
Cdd:pfam02954 3 EVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
393-544 |
5.97e-08 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 51.91 E-value: 5.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 393 VLLRGESGTGK----ELFAHAIHNgsnrkYNKFVRVNCAAISEtlleSELFG---YEEGAF----SGAKRGGKRGFFeea 461
Cdd:pfam07728 2 VLLVGPPGTGKtelaERLAAALSN-----RPVFYVQLTRDTTE----EDLFGrrnIDPGGAswvdGPLVRAAREGEI--- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 462 nngsIFLDEIGELSANTQAKLLRVLQEKEIVKVGGTKAI---PINVRVIAATHvnlekailegkfreDLYYRLNKIPiqi 538
Cdd:pfam07728 70 ----AVLDEINRANPDVLNSLLSLLDERRLLLPDGGELVkaaPDGFRLIATMN--------------PLDRGLNELS--- 128
|
....*.
gi 1068632266 539 PSLRQR 544
Cdd:pfam07728 129 PALRSR 134
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
197-345 |
6.07e-08 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 55.35 E-value: 6.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 197 TTRIPIlKEGGEVQGAFAIFKDITEvvDLAEEVTDLKEIQTLLEAIINSSEEAISVVDEKGRGLVINPAYTKLTGLTEED 276
Cdd:COG5000 53 SVRLPV-TGDDEIGELARAFNRMTD--QLKEQREELEERRRYLETILENLPAGVIVLDADGRITLANPAAERLLGIPLEE 129
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1068632266 277 IIGKPATTDIVEGESMHMKVLRTRRAVRGIHMKIGQKKRDVIVNVAPVIVDGIlkgsVGVIRDVSEIQK 345
Cdd:COG5000 130 LIGKPLEELLPELDLAELLREALERGWQEEIELTRDGRRTLLVRASPLRDDGY----VIVFDDITELLR 194
|
|
| PRK11360 |
PRK11360 |
two-component system sensor histidine kinase AtoS; |
188-353 |
6.14e-08 |
|
two-component system sensor histidine kinase AtoS;
Pssm-ID: 236901 [Multi-domain] Cd Length: 607 Bit Score: 55.74 E-value: 6.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 188 TLENGkkiITTRIPILK-EGGEVQGAfaifkditeVVDLAEevtDLKEIQTLLEAIINSSEEAISVVDEKGRGLVINPAY 266
Cdd:PRK11360 227 TLEND---LSTRLPPLPgELGEISQA---------INNLAQ---ALRETRSLNELILESIADGVIAIDRQGKITTMNPAA 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 267 TKLTGLTEEDIIGKPATTDIVEGESMHMKVLRT---RRAVRG--IHMKIGQKKRDVIVNVAPVI-VDGILKGSVGVIRDV 340
Cdd:PRK11360 292 EVITGLQRHELVGKPYSELFPPNTPFASPLLDTlehGTEHVDleISFPGRDRTIELSVSTSLLHnTHGEMIGALVIFSDL 371
|
170
....*....|...
gi 1068632266 341 SEIQKLTNELNRA 353
Cdd:PRK11360 372 TERKRLQRRVARQ 384
|
|
| PRK13560 |
PRK13560 |
hypothetical protein; Provisional |
105-357 |
1.04e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 106506 [Multi-domain] Cd Length: 807 Bit Score: 55.45 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 105 EKEELIGRLEEQTQQGELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPTSKllriIRTKQiEVN 184
Cdd:PRK13560 191 ERKRAEERIDEALHFLQQLLDNIADPAFWKDEDAKVFGCNDAACLACGFRREEIIGMSIHDFAPAQP----ADDYQ-EAD 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 185 YELTLENGKKIITTRIPilKEGGEVQGAFAIFKDIT------EVVDLAEEVTD----------LKEIQTLLEAIINSSEE 248
Cdd:PRK13560 266 AAKFDADGSQIIEAEFQ--NKDGRTRPVDVIFNHAEfddkenHCAGLVGAITDisgrraaereLLEKEDMLRAIIEAAPI 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 249 AISVVDEKGR-GLVINPAYTKLTGLTEEDIIGKP----------------------ATTDIVEGESMHMKVLRTRRAVRG 305
Cdd:PRK13560 344 AAIGLDADGNiCFVNNNAAERMLGWSAAEVMGKPlpgmdpelneefwcgdfqewypDGRPMAFDACPMAKTIKGGKIFDG 423
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1068632266 306 IHMKIGQKK---RDVIVNVAPVI-VDGILKGSVGVIRDVSEIQKLTNELNRARQII 357
Cdd:PRK13560 424 QEVLIEREDdgpADCSAYAEPLHdADGNIIGAIALLVDITERKQVEEQLLLANLIV 479
|
|
| PRK11359 |
PRK11359 |
cyclic-di-GMP phosphodiesterase; Provisional |
130-280 |
1.53e-07 |
|
cyclic-di-GMP phosphodiesterase; Provisional
Pssm-ID: 183097 [Multi-domain] Cd Length: 799 Bit Score: 54.78 E-value: 1.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 130 GMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIPtsKLLR-----IIRTKQIE-------VNYELTLENgkkiit 197
Cdd:PRK11359 24 GAVLINENDEVLFFNPAAEKLWGYKREEVIGNNIDMLIP--RDLRpahpeYIRHNREGgkarvegMSRELQLEK------ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 198 tripilKEGGEVQGAFAIFKDITE--------VVDLAEEVtDLKEIQTLLEAIINSSEEAISVVDEKGRGLVINPAYTKL 269
Cdd:PRK11359 96 ------KDGSKIWTRFALSKVSAEgkvyylalVRDASVEM-AQKEQTRQLIIAVDHLDRPVIVLDPERRIVQCNRAFTEM 168
|
170
....*....|.
gi 1068632266 270 TGLTEEDIIGK 280
Cdd:PRK11359 169 FGYCISEASGM 179
|
|
| PRK09776 |
PRK09776 |
putative diguanylate cyclase; Provisional |
202-352 |
2.05e-07 |
|
putative diguanylate cyclase; Provisional
Pssm-ID: 182070 [Multi-domain] Cd Length: 1092 Bit Score: 54.68 E-value: 2.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 202 ILKEGGEVQGAFAIFKDITEVVDLAEEVTDLKE-IQTLLEAIinssEEAISVVDEKGRGLVINPAYTKLTGLTEEDIIGK 280
Cdd:PRK09776 504 VLNKDGEVERLLGINMDMTEVRQLNEALFQEKErLHITLDSI----GEAVVCTDMAMKVTFMNPVAEKMTGWTQEEALGV 579
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 281 PA-----TTDIVEGESMH--MKVLRTRRAVR-----GIHMKIGQkKRDVIVNVAPVIV-DGILKGSVGVIRDVSEIQKLT 347
Cdd:PRK09776 580 PLltvlhITFGDNGPLMEniYSCLTSRSAAYleqdvVLHCRSGG-SYDVHYSITPLSTlDGENIGSVLVIQDVTESRKML 658
|
....*
gi 1068632266 348 NELNR 352
Cdd:PRK09776 659 RQLSY 663
|
|
| KinA |
COG5805 |
Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle ... |
213-360 |
7.60e-07 |
|
Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 444507 [Multi-domain] Cd Length: 496 Bit Score: 52.04 E-value: 7.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 213 FAIFKDITEVVDLAEEVTDLKEIQTLLEAIINSSEEAISVVDEKGRGLVINPAYTKLTGLTEEDIIGKPAtTDIVEGEsM 292
Cdd:COG5805 10 HEVKKDGTPIWINNEVLRMAIEITEELETILENLPDAIIAVNREGKVIYINPAMEKLLGYTSEEIIGKTI-FDFLEKE-Y 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1068632266 293 HMKVLRTRR------AVRGIHMKIGQKKRDVIVNVAPV-IVDGILKGSVGVIRDVSEIQKLTNELNRARQIIRTL 360
Cdd:COG5805 88 HYRVKTRIErlqkgyDVVMIEQIYCKDGELIYVEVKLFpIYNQNGQAAILALRDITKKKKIEEILQEQEERLQTL 162
|
|
| PAS_9 |
pfam13426 |
PAS domain; This domain is found in many signalling proteins in which it functions as a sensor ... |
256-342 |
8.40e-07 |
|
PAS domain; This domain is found in many signalling proteins in which it functions as a sensor domain. It recognizes FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 463873 [Multi-domain] Cd Length: 93 Bit Score: 47.46 E-value: 8.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 256 KGRGLVINPAYTKLTGLTEEDIIGKPATTDIVEGESMH-----MKVLRTRRAVRGIHMKIGQKKRDVIVNVAPVIVD-GI 329
Cdd:pfam13426 1 DGRIIYVNDAALRLLGYTREELLGKSITDLFAEPEDSErlreaLREGKAVREFEVVLYRKDGEPFPVLVSLAPIRDDgGE 80
|
90
....*....|...
gi 1068632266 330 LKGSVGVIRDVSE 342
Cdd:pfam13426 81 LVGIIAILRDITE 93
|
|
| PAS |
smart00091 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
238-281 |
1.42e-06 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.
Pssm-ID: 214512 Cd Length: 67 Bit Score: 46.24 E-value: 1.42e-06
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 1068632266 238 LLEAIINSSEEAISVVDEKGRGLVINPAYTKLTGLTEEDIIGKP 281
Cdd:smart00091 2 RLRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKS 45
|
|
| PAS_4 |
pfam08448 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
244-342 |
4.35e-06 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain is associated to signalling systems and works as a signal sensor domain. It recognizes differently substituted aromatic hydrocarbons, oxygen, different dodecanoic acids, autoinducers, 3,5-dimethyl-pyrazin-2-ol and N-alanyl-aminoacetone (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 312075 [Multi-domain] Cd Length: 110 Bit Score: 45.87 E-value: 4.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 244 NSSEEAISVVDEKGRGLVINPAYTKLTGLTEEDIIGKP----ATTDIVEGESMHM-KVLRTRRAVRG-IHMKIGQKKRDV 317
Cdd:pfam08448 2 DSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGKTlaelLPPEDAARLERALrRALEGEEPIDFlEELLLNGEERHY 81
|
90 100
....*....|....*....|....*.
gi 1068632266 318 IVNVAPVI-VDGILKGSVGVIRDVSE 342
Cdd:pfam08448 82 ELRLTPLRdPDGEVIGVLVISRDITE 107
|
|
| PRK11086 |
PRK11086 |
sensory histidine kinase DcuS; Provisional |
234-350 |
6.86e-06 |
|
sensory histidine kinase DcuS; Provisional
Pssm-ID: 236839 [Multi-domain] Cd Length: 542 Bit Score: 49.14 E-value: 6.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 234 EIQTLLE---AIINSSEEAISVVDEKGRGLVINPAYTKLTGLT---EEDIIGKPATTDIvegESMHMK-VLRTRRAVRgi 306
Cdd:PRK11086 215 EISTLFEqrqAMLQSIKEGVIAVDDRGEVTLINDEAKRLFNYKkglEDDPLGTDVESWM---PVSRLKeVLRTGTPRR-- 289
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1068632266 307 HMKIGQKKRDVIVNVAPVIVDGILKGSVGVIRDVSEIQKLTNEL 350
Cdd:PRK11086 290 DEEININGRLLLTNTVPVRVNGEIIGAIATFRDKTEVRQLAQRL 333
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
393-511 |
1.22e-04 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 42.20 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 393 VLLRGESGTGKELFAHAIHNGSNRkynKFVRVNCaaisetlleSELFgyeeGAFSGAKRGGKRGFFEEANNGS---IFLD 469
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGA---PFIEISG---------SELV----SKYVGESEKRLRELFEAAKKLApcvIFID 64
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1068632266 470 EI-----------GELSANTQAKLLRVLQEKEIVKVggtkaipiNVRVIAATH 511
Cdd:pfam00004 65 EIdalagsrgsggDSESRRVVNQLLTELDGFTSSNS--------KVIVIAATN 109
|
|
| PAS_8 |
pfam13188 |
PAS domain; PAS domains are involved in many signalling proteins where they are used as a ... |
121-168 |
1.35e-04 |
|
PAS domain; PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Heme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. This domain recognizes oxygen and CO (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 463802 [Multi-domain] Cd Length: 65 Bit Score: 40.61 E-value: 1.35e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1068632266 121 ELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIP 168
Cdd:pfam13188 4 RALFESSPDGILVLDEGGRIIYVNPAALELLGYELLGELLGELLDLLD 51
|
|
| PAS |
cd00130 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
248-340 |
1.54e-04 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Pssm-ID: 238075 [Multi-domain] Cd Length: 103 Bit Score: 41.46 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 248 EAISVVDEKGRGLVINPAYTKLTGLTEEDIIGKPATTDIVEGE-----SMHMKVLRTRRAVRG---IHMKIGQKKRDVIV 319
Cdd:cd00130 3 DGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDreelrERLENLLSGGEPVTLevrLRRKDGSVIWVLVS 82
|
90 100
....*....|....*....|.
gi 1068632266 320 NVAPVIVDGILKGSVGVIRDV 340
Cdd:cd00130 83 LTPIRDEGGEVIGLLGVVRDI 103
|
|
| dpiB |
PRK15053 |
sensor histidine kinase DpiB; Provisional |
103-234 |
1.85e-04 |
|
sensor histidine kinase DpiB; Provisional
Pssm-ID: 185013 [Multi-domain] Cd Length: 545 Bit Score: 44.82 E-value: 1.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 103 AHEKEELIGRLEEQ----TQQGELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKK--EEAIGKYILEVIPTSKLLrii 176
Cdd:PRK15053 203 AHIRRQMMGMEPKQiarvVRQQEALFSSVYEGLIAVDPHGYITAINRNARKMLGLSSpgRQWLGKPIAEVVRPADFF--- 279
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 177 rTKQIEVNY--ELTLENGKKIITTRIPIlKEGGEVQGAFAIFKDITEVVDLAEEVTDLKE 234
Cdd:PRK15053 280 -TEQIDEKRqdVVANFNGLSVIANREAI-RSGDDLLGAIISFRSKDEISTLNAQLTQIKQ 337
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
393-508 |
4.24e-04 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 42.85 E-value: 4.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 393 VLLRGESGTGKELFAHAIHNGSNRKynkFVRVNCaaiSETLLESELFGYE-----EGAFsgakrggkrgFFEEannGSIF 467
Cdd:COG0714 34 LLLEGVPGVGKTTLAKALARALGLP---FIRIQF---TPDLLPSDILGTYiydqqTGEF----------EFRP---GPLF 94
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1068632266 468 -----LDEIGELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIA 508
Cdd:COG0714 95 anvllADEINRAPPKTQSALLEAMEERQVTIPGGTYKLPEPFLVIA 140
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
384-519 |
1.72e-03 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 39.57 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 384 KLGANTPATVLLRGESGTGKELFAHAIHNGSNRkynKFVRVNCaaisetlleSELFGYEEGafSGAKRGGKrgFFEEANN 463
Cdd:cd19481 20 RYGLGLPKGILLYGPPGTGKTLLAKALAGELGL---PLIVVKL---------SSLLSKYVG--ESEKNLRK--IFERARR 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1068632266 464 GS---IFLDEIGELSAN-----TQAKLLRVLQE--KEIVKVGGTKaipiNVRVIAATH--VNLEKAIL 519
Cdd:cd19481 84 LApciLFIDEIDAIGRKrdssgESGELRRVLNQllTELDGVNSRS----KVLVIAATNrpDLLDPALL 147
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
365-510 |
1.88e-03 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 41.15 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 365 SFDDIVGNSDETTAAIEQ-----------AKLGANTPATVLLRGESGTGKELFAHAIHNGSNRkynKFVRVNCAAI---- 429
Cdd:COG1222 76 TFDDIGGLDEQIEEIREAvelplknpelfRKYGIEPPKGVLLYGPPGTGKTLLAKAVAGELGA---PFIRVRGSELvsky 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 430 ---SETLLeselfgyeegafsgakrggkRGFFEEANNGS---IFLDEI-------------GELSaNTQAKLLRVLQEKE 490
Cdd:COG1222 153 igeGARNV--------------------REVFELAREKApsiIFIDEIdaiaarrtddgtsGEVQ-RTVNQLLAELDGFE 211
|
170 180
....*....|....*....|
gi 1068632266 491 IVKvggtkaipiNVRVIAAT 510
Cdd:COG1222 212 SRG---------DVLIIAAT 222
|
|
| RecA-like_CDC48_r1-like |
cd19519 |
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP ... |
384-510 |
8.24e-03 |
|
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r1-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410927 [Multi-domain] Cd Length: 166 Bit Score: 37.80 E-value: 8.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1068632266 384 KLGANTPATVLLRGESGTGKELFAHAIHNGSNrkynkfvrVNCAAISETLLESELFGYEEGAFsgakrggkRGFFEEANN 463
Cdd:cd19519 28 AIGIKPPRGILLYGPPGTGKTLIARAVANETG--------AFFFLINGPEIMSKLAGESESNL--------RKAFEEAEK 91
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1068632266 464 GS---IFLDEIGELS---ANTQAKLLRVLQEKEIVKVGGTKAIPiNVRVIAAT 510
Cdd:cd19519 92 NApaiIFIDEIDAIApkrEKTHGEVERRIVSQLLTLMDGLKQRA-HVIVMAAT 143
|
|
| |
