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Conserved domains on  [gi|1071438784|ref|WP_069863804|]
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MULTISPECIES: flagellar motor protein MotD [Pseudomonas]

Protein Classification

flagellar motor protein MotD( domain architecture ID 11483499)

flagellar motor protein MotD (motility protein D) is required for the rotation of the flagellar motor

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 1-268 7.63e-166

flagellar motor protein MotD; Reviewed


:

Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 461.40  E-value: 7.63e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784   1 MARRPPREEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGVFNQPDRSIKPIPVGDDRPRTTQQP- 79
Cdd:PRK09038    2 MRRRKHHEEHENHERWLVSYADFITLLFAFFVVMYAISSVNEGKYKVLSEALTGAFNGPSRSMKPIPIGKEQPKTTQPAr 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784  80 NDAMQQGGDDNVDGDPLTQIADAVREQFGDLIGSDQLSVRGNELWIEITLNSSLLFPSGDAMPADAAFGIVEKVARILAP 159
Cdd:PRK09038   82 PLVIDSEQPDARAQDQLKTIADDLRKALGPLIESGQVTVRRNELWIEIEINSSLLFGSGDAMLSDQAFAILEKVAEVLKP 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 160 YQNPIHVEGFTDNVPIHNAQYPTNWELSTARAASIVRLLAQDGVAPSRLAAVGYGEFQPVADNASAEGRARNRRVVLVIS 239
Cdd:PRK09038  162 APNPIHVEGFTDNVPIATAQFPSNWELSAARAASVVRLLADDGVAPSRLAAVGYGEFQPVADNDTAEGRARNRRVVLVIL 241

                         250       260
                  ....*....|....*....|....*....
gi 1071438784 240 RNLEVRRSVSGVGSAKAQPDGALRQAGTQ 268
Cdd:PRK09038  242 RNLDVRRSLTPVGSANATPDAALRRAGTQ 270
 
Name Accession Description Interval E-value
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 1-268 7.63e-166

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 461.40  E-value: 7.63e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784   1 MARRPPREEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGVFNQPDRSIKPIPVGDDRPRTTQQP- 79
Cdd:PRK09038    2 MRRRKHHEEHENHERWLVSYADFITLLFAFFVVMYAISSVNEGKYKVLSEALTGAFNGPSRSMKPIPIGKEQPKTTQPAr 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784  80 NDAMQQGGDDNVDGDPLTQIADAVREQFGDLIGSDQLSVRGNELWIEITLNSSLLFPSGDAMPADAAFGIVEKVARILAP 159
Cdd:PRK09038   82 PLVIDSEQPDARAQDQLKTIADDLRKALGPLIESGQVTVRRNELWIEIEINSSLLFGSGDAMLSDQAFAILEKVAEVLKP 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 160 YQNPIHVEGFTDNVPIHNAQYPTNWELSTARAASIVRLLAQDGVAPSRLAAVGYGEFQPVADNASAEGRARNRRVVLVIS 239
Cdd:PRK09038  162 APNPIHVEGFTDNVPIATAQFPSNWELSAARAASVVRLLADDGVAPSRLAAVGYGEFQPVADNDTAEGRARNRRVVLVIL 241

                         250       260
                  ....*....|....*....|....*....
gi 1071438784 240 RNLEVRRSVSGVGSAKAQPDGALRQAGTQ 268
Cdd:PRK09038  242 RNLDVRRSLTPVGSANATPDAALRRAGTQ 270
MotB COG1360
Flagellar motor protein MotB [Cell motility];
8-241 3.66e-70

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 214.71  E-value: 3.66e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784   8 EEHENHERWLVSYADFITLLFAFFVVMYSISSinegkykilsetltgvfnqpdrsikpipvgddrprttqqpndamqqgg 87
Cdd:COG1360     2 EEGHHGGAWLVTYADLMTLLLAFFVLLWALSS------------------------------------------------ 33

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784  88 ddnvdgdpltqiadavreQFGDLIGSDQLSVRGNELWIEITLNSSLLFPSGDAMPADAAFGIVEKVARILAPYQNPIHVE 167
Cdd:COG1360    34 ------------------ALEENLLSGQVEVRITEEGLVIEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEVPNRIRVE 95

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1071438784 168 GFTDNVPIHNAQYPTNWELSTARAASIVRLLAQDGVAPSRLAAVGYGEFQPVADNASAEGRARNRRVVLVISRN 241
Cdd:COG1360    96 GHTDNVPISTARFPSNWELSAARAAAVVRYLIEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILRR 169
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 132-238 1.41e-33

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 118.42  E-value: 1.41e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 132 SLLFPSGDAMPADAAFGIVEKVARILAPYQN-PIHVEGFTDNVpihnAQYPTNWELSTARAASIVRLLAQDGVAPSRLAA 210
Cdd:cd07185     3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDaKIRIEGHTDSR----GSDAYNQELSERRAEAVADYLVSKGVDASRITA 78

                          90       100
                  ....*....|....*....|....*...
gi 1071438784 211 VGYGEFQPVADNASAEGRARNRRVVLVI 238
Cdd:cd07185    79 VGYGESRPIASNDTEEGRAKNRRVEIVI 106
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 125-238 5.94e-32

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 115.48  E-value: 5.94e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 125 IEITLNSSLLFPSGDAMPADAAFGIVEKVARILAPYQNPIHVEGFTDNVPIHNAQYPTNWELSTARAASIVRLLAQDGVA 204
Cdd:TIGR03350  24 SVVRLRGDELFASGSAEVRAEFEPLLLRIAKALAAVPGRITVVGHTDNVPIRTARFPSNWHLSEARAKAVADVLAQAGGP 103

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1071438784 205 PSRLAAVGYGEFQPVADNASAEGRARNRRVVLVI 238
Cdd:TIGR03350 104 AGRVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
MotB_plug pfam13677
Membrane MotB of proton-channel complex MotA/MotB; This is the MotB member of the E.coli MotA ...
 3-56 2.67e-23

Membrane MotB of proton-channel complex MotA/MotB; This is the MotB member of the E.coli MotA/MotB proton-channel complex that forms the stator of the bacterial membrane flagellar motor. Key residues act as a plug to prevent premature proton flow. The plug is in the periplasm just C-terminal to the MotB TM, consisting of an amphipathic alpha helix flanked by Pro-52 and Pro-65, eg in Swiss:D3V2T1. In addition to the Pro residues, Ile-58, Tyr-61, and Phe 62 are also essential for plug function.


Pssm-ID: 463955 [Multi-domain]  Cd Length: 57  Bit Score: 90.28  E-value: 2.67e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1071438784   3 RRPPREEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGVF 56
Cdd:pfam13677   4 KKEPEHEGGHGERWLVTYADLMTLLLAFFVLLYSMSSVDEKKFQQIAESFQDAF 57
 
Name Accession Description Interval E-value
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 1-268 7.63e-166

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 461.40  E-value: 7.63e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784   1 MARRPPREEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGVFNQPDRSIKPIPVGDDRPRTTQQP- 79
Cdd:PRK09038    2 MRRRKHHEEHENHERWLVSYADFITLLFAFFVVMYAISSVNEGKYKVLSEALTGAFNGPSRSMKPIPIGKEQPKTTQPAr 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784  80 NDAMQQGGDDNVDGDPLTQIADAVREQFGDLIGSDQLSVRGNELWIEITLNSSLLFPSGDAMPADAAFGIVEKVARILAP 159
Cdd:PRK09038   82 PLVIDSEQPDARAQDQLKTIADDLRKALGPLIESGQVTVRRNELWIEIEINSSLLFGSGDAMLSDQAFAILEKVAEVLKP 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 160 YQNPIHVEGFTDNVPIHNAQYPTNWELSTARAASIVRLLAQDGVAPSRLAAVGYGEFQPVADNASAEGRARNRRVVLVIS 239
Cdd:PRK09038  162 APNPIHVEGFTDNVPIATAQFPSNWELSAARAASVVRLLADDGVAPSRLAAVGYGEFQPVADNDTAEGRARNRRVVLVIL 241

                         250       260
                  ....*....|....*....|....*....
gi 1071438784 240 RNLEVRRSVSGVGSAKAQPDGALRQAGTQ 268
Cdd:PRK09038  242 RNLDVRRSLTPVGSANATPDAALRRAGTQ 270
MotB COG1360
Flagellar motor protein MotB [Cell motility];
8-241 3.66e-70

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 214.71  E-value: 3.66e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784   8 EEHENHERWLVSYADFITLLFAFFVVMYSISSinegkykilsetltgvfnqpdrsikpipvgddrprttqqpndamqqgg 87
Cdd:COG1360     2 EEGHHGGAWLVTYADLMTLLLAFFVLLWALSS------------------------------------------------ 33

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784  88 ddnvdgdpltqiadavreQFGDLIGSDQLSVRGNELWIEITLNSSLLFPSGDAMPADAAFGIVEKVARILAPYQNPIHVE 167
Cdd:COG1360    34 ------------------ALEENLLSGQVEVRITEEGLVIEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEVPNRIRVE 95

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1071438784 168 GFTDNVPIHNAQYPTNWELSTARAASIVRLLAQDGVAPSRLAAVGYGEFQPVADNASAEGRARNRRVVLVISRN 241
Cdd:COG1360    96 GHTDNVPISTARFPSNWELSAARAAAVVRYLIEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILRR 169
motB PRK07734
flagellar motor protein MotB; Reviewed
 1-241 4.35e-49

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 163.76  E-value: 4.35e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784   1 MARRPPREEHENH--ERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETL-------TGVFNQPDrSIKPI--PVG 69
Cdd:PRK07734    2 KNRKKKKKKHEEHidESWLIPYADLLTLLLALFIVLFAMSSIDAAKFKQMAVAFnsefaggTGVKDFLS-DQKPEdeKEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784  70 DDRPRTTQQPNDAMQQGGDDNVDGDPLTQIADAVREQFGDLIGSDQLSVRGNELWIEITLNSSLLFPSGDAMPADAAFGI 149
Cdd:PRK07734   81 SASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQLSSSLQTKLTEEGLLITILDNILFDSGKADVRLEDLPL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 150 VEKVARIL--APYQNpIHVEGFTDNVPIHNAQYPTNWELSTARAASIVRLLAQDG-VAPSRLAAVGYGEFQPVADNASAE 226
Cdd:PRK07734  161 AKEISNLLvsNPPRN-ITISGHTDNVPIANAQFASNWELSVMRAVNFMQVLLENKeLDPEKFSAKGYGEYKPIASNDTAE 239

                         250
                  ....*....|....*.
gi 1071438784 227 GRARNRRV-VLVISRN 241
Cdd:PRK07734  240 GRAKNRRVeVLILPLT 255
PRK06925 PRK06925
flagellar motor protein MotB;
1-241 2.16e-45

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 153.38  E-value: 2.16e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784   1 MARRPpREEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLT--GVFNQPDRSIKpipvgddrprttQQ 78
Cdd:PRK06925    1 MERRK-RQQSKGSPKWMVTFSDLITLILVFFILLFSMSQIDAQKFKAAVESFQqrGSLGFLPSAIE------------FE 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784  79 PNDAMQQggDDNVDGDPLTQIADAVREQFGDLIGSDQLSVRGNELWIEITLNSSLLFPSGDAMPADAAFGIVEKVARILA 158
Cdd:PRK06925   68 NPAESSE--DEEKQEDQLDELLKKVNEYIEENELKSVITAKRDERGVVLVLQEAVLFETGEADILKQAEPFLHKIGVLLS 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 159 PYQNPIHVEGFTDNVPIHNAQYPTNWELSTARAASIVR-LLAQDGVAPSRLAAVGYGEFQPVADNASAEGRARNRRVVLV 237
Cdd:PRK06925  146 TIPNDIKVEGHTDSRPISTYRYPSNWELSAARASSVIRyFTSKEKLDSSRFIAVGYADTKPVVPNTTEENMQENRRVEIV 225


                  ....
gi 1071438784 238 ISRN 241
Cdd:PRK06925  226 ISDP 229
motB PRK08944
flagellar motor protein MotB; Reviewed
 1-239 3.74e-44

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 152.09  E-value: 3.74e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784   1 MARRPPREEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGVFN-QPDRSIKPIPVGDD-------- 71
Cdd:PRK08944    2 MAEKKCKCPPPGAPAWLATFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGvQNKIEVKDIPKGTSiiaqefrp 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784  72 -RPRTT------QQPNDAMQ-----QGGDDNVDGDPLTQ------------------------------IADAVREQFGD 109
Cdd:PRK08944   82 gRPEPTpievimQQTIDMTQqtlefQAGESDSAGGTQQQrgkqrggeasaevkaekaaaqeqiedlvkkLAQQLEKEIED 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 110 liGSDQLSVRGNELWIEITLNSSllFPSGDAMPADAAFGIVEKVARILAPYQNPIHVEGFTDNVPIHNAQYPTNWELSTA 189
Cdd:PRK08944  162 --GAIEIESLGQQIIIRIREKGS--FPSGSAFLQPKFKPVVRKIGELLKDVPGIITVSGHTDNVPISSELYRSNWDLSSA 237

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1071438784 190 RAASIVR-LLAQDGVAPSRLAAVGYGEFQPVADNASAEGRARNRRVVLVIS 239
Cdd:PRK08944  238 RAVAVAHeLLKVKGFDPQRLKVVGMADTQPLVPNDTAENRARNRRVEIIIE 288
motB PRK08457
flagellar motor protein MotB; Reviewed
 1-248 1.30e-36

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 131.38  E-value: 1.30e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784   1 MARRPPREEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGVFNQPDrsiKPipvGDDRPRTTQQPN 80
Cdd:PRK08457    1 MAKKKKPTECPAGEKWAVPYADFLSLLLALFIALYAISAVNKAKVEALKTEFIKIFDYTA---KP---EVKQPVKVIPPD 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784  81 DAMQQGGDDNVDGDPLTQIA--DAVREQFGDLIGSDQLsvrgnELWIEITLNSSLLFPSGDAMPADA-AFGIVEKVARIL 157
Cdd:PRK08457   75 SGDAEEEMDELKSLKASQNTqqETIERRKGEGGALDQI-----DNGIALKLPSKLLFENGSAEIINAdMMDYLKRIAKII 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 158 A--PYQNPIHVEGFTDNVPIHNAQYPTNWELSTARAASIVRLLAQDGVAPSRLAAVGYGEFQPVADNASAEGRARNRRVV 235
Cdd:PRK08457  150 TklPKQVKINVRGYTDNSPLNKSRYKDHYELAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAPNDSLENRLKNNRVE 229

                         250
                  ....*....|....*.
gi 1071438784 236 ---LVISRNLEVRRSV 248
Cdd:PRK08457  230 iffKVDANDTSTQKSI 245
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 132-238 1.41e-33

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 118.42  E-value: 1.41e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 132 SLLFPSGDAMPADAAFGIVEKVARILAPYQN-PIHVEGFTDNVpihnAQYPTNWELSTARAASIVRLLAQDGVAPSRLAA 210
Cdd:cd07185     3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDaKIRIEGHTDSR----GSDAYNQELSERRAEAVADYLVSKGVDASRITA 78

                          90       100
                  ....*....|....*....|....*...
gi 1071438784 211 VGYGEFQPVADNASAEGRARNRRVVLVI 238
Cdd:cd07185    79 VGYGESRPIASNDTEEGRAKNRRVEIVI 106
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 1-238 1.80e-32

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 119.40  E-value: 1.80e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784   1 MARRPPReeheNHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGVfNQPDRSIKPIPVGD------DRPR 74
Cdd:PRK06742    1 MIKRPQK----GSPRWMTTFTDLTMLLLTFFVLLVATSKQDAVKLSKMLEKFSDT-EQVDAKVMENTIPDisheknDEKM 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784  75 TTQQPNDAMQQGGDDNVDGDPLTQIaDAVREQFGdligsdqlsvrgnelwIEITLNSSLLFPSGDAMPADAAFGIVEKVA 154
Cdd:PRK06742   76 ISKKRMDELYKKLKAYVDNNGISQV-NVYREDTG----------------VSVVIVDNLIFDTGDANVKPEAKEIISQLV 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 155 RILAPYQNPIHVEGFTDNVPIHNAQYPTNWELSTARAASIV-RLLAQDGVAPSRLAAVGYGEFQPVADNASAEGRARNRR 233
Cdd:PRK06742  139 GFFQSVPNPIVVEGHTDSRPIHNDKFPSNWELSSARAANMIhHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWEKNRR 218


                  ....*
gi 1071438784 234 VVLVI 238
Cdd:PRK06742  219 VVIYI 223
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 125-238 5.94e-32

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 115.48  E-value: 5.94e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 125 IEITLNSSLLFPSGDAMPADAAFGIVEKVARILAPYQNPIHVEGFTDNVPIHNAQYPTNWELSTARAASIVRLLAQDGVA 204
Cdd:TIGR03350  24 SVVRLRGDELFASGSAEVRAEFEPLLLRIAKALAAVPGRITVVGHTDNVPIRTARFPSNWHLSEARAKAVADVLAQAGGP 103

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1071438784 205 PSRLAAVGYGEFQPVADNASAEGRARNRRVVLVI 238
Cdd:TIGR03350 104 AGRVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
motB PRK06667
flagellar motor protein MotB; Validated
 1-238 2.62e-30

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 114.51  E-value: 2.62e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784   1 MARRPPREEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGV-FNQPDRSIkpipvgdDRPRTTQQP 79
Cdd:PRK06667    3 MRKKKCPKCIQGAPEYMLTYGDMVTLLLCFFVMLFTTNDVDENVLQIISASFTGTgFFKGGQTL-------SKGKLSELG 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784  80 NDAMQQggDDNVDGDPLTQIADAVREQFGDLIGSDQLSVRGNELWIEITLNSSLLFPSGDA-MPADAAFGIVEKVA---R 155
Cdd:PRK06667   76 NSIMSL--PSTEKGKQLSQAKKNASSLFKPEIQSNKVAVTEDERGLVISLASDAFFYPGSAeVKLEENRETLQKIAsfiG 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 156 ILAPYQNPIHVEGFTDNVPIH-NAQYPTNWELSTARAASIVRLLAQDGV-APSRLAAVGYGEFQPVADNASAEGRARNRR 233
Cdd:PRK06667  154 FLDLAGRNFRIEGHTDNVDVNpEGPWKSNWELSGARAVNMLEYILNYGDqSESWFQVSGFAGSRPLATEDTPEGRAYNRR 233


                  ....*
gi 1071438784 234 VVLVI 238
Cdd:PRK06667  234 IDIVI 238
PRK09039 PRK09039
peptidoglycan -binding protein;
131-236 8.78e-29

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 112.37  E-value: 8.78e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 131 SSLLFPSGDAMPADAAFGIVEKVARILAPYQNPI--------HVEGFTDNVPIHNA-QYPTNWELSTARAASIVRLLAQD 201
Cdd:PRK09039  224 SEVLFPTGSAELNPEGQAEIAKLAAALIELAKEIppeinwvlRVDGHTDNVPLSGTgRFRDNWELSSARAISVVKFLIAL 303

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1071438784 202 GVAPSRLAAVGYGEFQPVADNASAEGRARNRRVVL 236
Cdd:PRK09039  304 GVPADRLAAAGFGEFQPLDPGDTPEARARNRRIEL 338
PRK08126 PRK08126
hypothetical protein; Provisional
 134-240 9.01e-26

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 105.55  E-value: 9.01e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 134 LFPSGDAMPADAAFGIVEKVARILAPYQNPIHVEGFTDNVPIHNAQYPTNWELSTARAASIVRLLAQDGVAPSRLAAVGY 213
Cdd:PRK08126  326 MFVPGQATVNPAMGPLIAKIAREIARVGGKVTVTGHTDNQPIRSAQFASNLVLSEKRAAQVAQMLQSAGVPASRLEAVGK 405

                          90       100
                  ....*....|....*....|....*..
gi 1071438784 214 GEFQPVADNASAEGRARNRRVVLVISR 240
Cdd:PRK08126  406 GDAQPVADNRTPQGRAQNRRVEITVAE 432
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 67-241 4.99e-25

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 101.40  E-value: 4.99e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784  67 PVGDDRPRTTQQPNDAMQQGGDDNVDGDPLTQIADAVREQFGDLIGSDQLSVRGNELWIEITLNSSLLFPSGDAMPADAA 146
Cdd:COG2885   123 ALAAGAAAALGALGASAAAAAAALAAAKALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEA 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 147 FGIVEKVARILApyQNP---IHVEGFTDNVPihNAQYptNWELSTARAASIVRLLAQDGVAPSRLAAVGYGEFQPVADNA 223
Cdd:COG2885   203 KAALDELAALLK--ENPdlrIEIEGHTDSRG--SDAY--NLALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASND 276

                         170
                  ....*....|....*...
gi 1071438784 224 SAEGRARNRRVVLVISRN 241
Cdd:COG2885   277 TEEGRAKNRRVEIVVLKK 294
PRK07033 PRK07033
DotU family type VI secretion system protein;
127-234 1.06e-24

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 102.44  E-value: 1.06e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 127 ITLNSSLLFPSGDAMPADAAFGIVEKVARILAPYQNPIHVEGFTDNVPIHNAQYPTNWELSTARAASIVRLLAQDGVAPS 206
Cdd:PRK07033  310 VTLRGDGLFASASTSVRDRYQPVLARVADALNQVKGNVLVTGYSDNVPIRTARFPSNWELSQARAQAVRALLAARLGQPE 389

                          90       100
                  ....*....|....*....|....*...
gi 1071438784 207 RLAAVGYGEFQPVADNASAEGRARNRRV 234
Cdd:PRK07033  390 RVTAEGRGDSDPVAPNDSAENRARNRRV 417
MotB_plug pfam13677
Membrane MotB of proton-channel complex MotA/MotB; This is the MotB member of the E.coli MotA ...
 3-56 2.67e-23

Membrane MotB of proton-channel complex MotA/MotB; This is the MotB member of the E.coli MotA/MotB proton-channel complex that forms the stator of the bacterial membrane flagellar motor. Key residues act as a plug to prevent premature proton flow. The plug is in the periplasm just C-terminal to the MotB TM, consisting of an amphipathic alpha helix flanked by Pro-52 and Pro-65, eg in Swiss:D3V2T1. In addition to the Pro residues, Ile-58, Tyr-61, and Phe 62 are also essential for plug function.


Pssm-ID: 463955 [Multi-domain]  Cd Length: 57  Bit Score: 90.28  E-value: 2.67e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1071438784   3 RRPPREEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSETLTGVF 56
Cdd:pfam13677   4 KKEPEHEGGHGERWLVTYADLMTLLLAFFVLLYSMSSVDEKKFQQIAESFQDAF 57
PRK09040 PRK09040
hypothetical protein; Provisional
 118-234 7.36e-21

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 88.15  E-value: 7.36e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 118 VRGNELWieiTLNSSLLFPSGDAmpadaafgIVEKVARILAPY----QNPIHVEGFTDNVPIH--NAQYPTNWELSTARA 191
Cdd:PRK09040   86 ISGSVLF---ALNSDQLQPEGRE--------LLKSLAGPLAAYlrarDEILMVSGFTDDQPVRagNRRFADNWELSAQRA 154

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1071438784 192 ASIVRLLAQDGVAPSRLAAVGYGEFQPVADNASAEGRARNRRV 234
Cdd:PRK09040  155 LTVTRALIDAGVPASSVFAAAFGSEQPVASNADDEGRAKNRRV 197
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 149-231 4.92e-16

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 72.01  E-value: 4.92e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 149 IVEKVARILAPYQNPIH--VEGFTDNVPIHNAqyptNWELSTARAASIVRLLAQDGVAPSRLAAVGYGEFQPVADNASAE 226
Cdd:pfam00691  15 TLDEIADLLKFPELKNTitIEGHTDTVGSAAY----NWELSQRRAEAVRRYLVNFGVPPSRISVVGYGATKPITDNKTPE 90


                  ....*
gi 1071438784 227 GRARN 231
Cdd:pfam00691  91 GRARN 95
motB PRK12799
flagellar motor protein MotB; Reviewed
 1-238 5.44e-14

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 71.67  E-value: 5.44e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784   1 MARRPPREEHENHE--RWLVSYADFITLLFAFFVVMY--SISS------INEGKYKILSETLTGVFNQPDRSiKPIPVGD 70
Cdd:PRK12799   10 LVKKRKTKHGAAHYggSWKIAYADFMTAMMAFFLVMWllAVSSpqeltqIAEYFRTPLKVALTSGDKSSSST-SPIPGGG 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784  71 DRPrtTQQPNDAMQQggDDNVDGDPLTQIADAVREQFGDLIGSD-QLSVRGNELWIE----------ITLNSSLLFPSGD 139
Cdd:PRK12799   89 DDP--TQQVGEVRKQ--INSEESRQEIHRLNKLREKLDQLIESDpRLKALRPHLLINmmdeglriqiIDSQNRPMFKMGS 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 140 AMPADAAFGIVEKVARILAPYQNPIHVEGFTDNVPIHNAQYP-TNWELSTARAASIVRLLAQDGVAPSR-LAAVGYGEFQ 217
Cdd:PRK12799  165 AQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGERGySNWELSADRANASRRELLAGGLDEGKiLRVVGMASTM 244

                         250       260
                  ....*....|....*....|.
gi 1071438784 218 PVADNASAEgrARNRRVVLVI 238
Cdd:PRK12799  245 RLKEQASDD--PVNRRISILV 263
PRK07034 PRK07034
hypothetical protein; Provisional
 121-234 5.63e-12

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 65.97  E-value: 5.63e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 121 NELWIEI---------TLNSSLLFPSGDAMPADAAFGI--VEKVARILAPYQNPIHVEGFTDNVPIHNAQYPTNWELSTA 189
Cdd:PRK07034  375 NEGWLEVrkdprgwllIFTSDGAFRTGEATLSEEFINKknIERLGLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAA 454

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1071438784 190 RAASIVRLLAQ----DGVAPSRLAAVGYGEFQPVADNASAEGRARNRRV 234
Cdd:PRK07034  455 RASVVADKLREstqiNETHQREISAIGRGESDPLADNATEEGRKRNRRV 503
PRK10510 PRK10510
OmpA family lipoprotein;
126-239 1.09e-11

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 62.97  E-value: 1.09e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 126 EITLN--SSLLFPSGDAMPADAAFGIVEKVARILAPYQ-NPIHVEGFTDNVPIHNaqypTNWELSTARAASIVRLLAQDG 202
Cdd:PRK10510  105 NIILNmpNNVTFDSSSATLKPAGANTLTGVAMVLKEYPkTAVNVVGYTDSTGSHD----LNMRLSQQRADSVASALITQG 180

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1071438784 203 VAPSRLAAVGYGEFQPVADNASAEGRARNRRVVLVIS 239
Cdd:PRK10510  181 VDASRIRTQGMGPANPIASNSTAEGKAQNRRVEITLS 217
motB PRK05996
MotB family protein;
57-238 7.68e-11

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 62.02  E-value: 7.68e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784  57 NQPDRSIKPIPVGDDRPRTTQQPNDAMQQGGDDNVDGD--PLTQIADAVREQFGDLIG--SDQLSVRGNE--LWIEITLN 130
Cdd:PRK05996  233 KKAATEEELIADAKKAATGEPAANAAKAAKPEPMPDDQqkEAEQLQAAIAQAIGGVAGklAEGVTVTPVEggLLISLTDQ 312

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 131 SSL-LFPSGDAMPADAAFGIVEKVARILAPYQNPIHVEGFTDNVPIHNAQYpTNWELSTARAASIVRLLAQDGVAPSRLA 209
Cdd:PRK05996  313 VDYgMFAIGSAVPRAELVLAMEKIGQLLAERPGAVIIRGHTDARPFKSATY-DNWRLSTARAQSAYYMLVRGGLDEKRIE 391

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1071438784 210 AV-GYGEFQP-VADNASAegrARNRRVVLVI 238
Cdd:PRK05996  392 QVeGFADRRPkLPNDPNA---AANRRIEILI 419
PRK09967 PRK09967
OmpA family protein;
129-239 1.34e-09

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 56.14  E-value: 1.34e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 129 LNSSLLFPSGDA-MPADAAFGIVEKVARILAPYQNPIHVEGFTDNVpihnAQYPTNWELSTARAASIVRLLAQDGVAP-S 206
Cdd:PRK09967   50 LSDAILFAKNDYkLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY----GEDSYNEGLSLKRANVVADAWAMGGQIPrS 125

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1071438784 207 RLAAVGYGEFQPVADNASAEGRARNRRVVLVIS 239
Cdd:PRK09967  126 NLTTQGLGKKYPIASNKTAQGRAENRRVAVVIT 158
motB PRK09041
motility protein MotB;
16-268 4.42e-09

motility protein MotB;


Pssm-ID: 236365 [Multi-domain]  Cd Length: 317  Bit Score: 56.49  E-value: 4.42e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784  16 WLVSYADFITLLFAFFVVMYSISSINEGKYKILSE--------TLTGVFNQPDRSIkPIPVG-DDRPRTTQQPNDAmqqg 86
Cdd:PRK09041   26 WKIAYADFMTAMMAFFLVMWLLSSSTPEQLIGIAEyfrtplkvALTGGDRSSDSTS-PIPGGgDDITQQDGEVNKQ---- 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784  87 gdDNVDGDPLTQIADAVREQFGDLIGSDQLSVRGN--------ELWIEITLNSsL-----------LFPSGDAMPADAAF 147
Cdd:PRK09041  101 --PNIAELAQGEKERREQERLEKLKQELDQAIESNpklrqfkpQLLIDLTQEG-LriqivdsqnrpMFATGSAEVEPYMR 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 148 GIVEKVARILAPYQNPIHVEGFTDNVPIHNAQ--YpTNWELSTARAASIVRLLAQDGVAPSRLA-AVGYGEFQPV--ADN 222
Cdd:PRK09041  178 DILREIAPVLNDVPNRISLSGHTDATPYANGEkgY-SNWELSADRANASRRELVAGGMDEGKVLrVVGLASTMLLdkKDP 256

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1071438784 223 ASAEgrarNRRVVLVI-----SRNLEVRRSVSGVGSAKAQPDGALRQAGTQ 268
Cdd:PRK09041  257 LNPV----NRRISIVVlnkkaEEAILHENAESVALSAQNEPVSALEAPAAA 303
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 190-238 1.05e-07

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 49.10  E-value: 1.05e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1071438784 190 RAASIVRLLAQDGVAPSRLAAVGYGEFQPVADNASAEGRARNRRVVLVI 238
Cdd:TIGR02802  56 RANAVKDYLQSKGVSASQIETVSYGKEKPAALGHDEAAWAKNRRAVLVY 104
PRK14693 PRK14693
hypothetical protein; Provisional
 150-234 7.99e-06

hypothetical protein; Provisional


Pssm-ID: 173156 [Multi-domain]  Cd Length: 552  Bit Score: 47.07  E-value: 7.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 150 VEKVARILAPYQNPIHVEGFTDNVPIHNAQYPTNWELSTARAASI---VRLLAQDGVAPSRLAAV-------GYGEFQPV 219
Cdd:PRK14693  391 IERLGLAFAPWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNVadeLRKTALPGGARAPENAVqrnieysGRGDAQPI 470

                          90
                  ....*....|....*
gi 1071438784 220 ADNASAEGRARNRRV 234
Cdd:PRK14693  471 DTAKTAAAYERNRRV 485
motB PRK05996
MotB family protein;
3-97 2.43e-04

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 42.38  E-value: 2.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784   3 RRPPREEHENHER--WLVSYADFITLLFAFFVVMYSISSINEgkykilsETLTGV---FN-------QPDR----SIKPI 66
Cdd:PRK05996   17 RRGGDDDHEGHHGgvWKIAYADFMTAMMAFFLVMWLINAANE-------ETKAAVasyFNpikltdrKPSEkglkDPVDG 89

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1071438784  67 PVGDDRPRTTQQPNDAMQQGGDDNvDGDPLT 97
Cdd:PRK05996   90 AEGEQKPGKSKFEEDQRVEGSSAV-TGDDTT 119
PRK10808 PRK10808
outer membrane protein A; Reviewed
 159-258 3.37e-03

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 38.52  E-value: 3.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1071438784 159 PYQNPIHVEGFTDNvpIHNAQYptNWELSTARAASIVRLLAQDGVAPSRLAAVGYGEFQPVADNASAEGRARNRRVV-LV 237
Cdd:PRK10808  255 PKDGSVVVLGYTDR--IGSDAY--NQGLSEKRAQSVVDYLVSKGIPADKISARGMGKSNPVTGNTCDNVKPRAALIDcLA 330

                          90       100
                  ....*....|....*....|.
gi 1071438784 238 ISRNLEVRrsVSGVGSAKAQP 258
Cdd:PRK10808  331 PDRRVEIE--VKGIKDVVTQP 349
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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