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Conserved domains on  [gi|1092724574|ref|WP_070652847|]
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type II secretion system F family protein [Corynebacterium sp. HMSC065H09]

Protein Classification

type II secretion system F family protein( domain architecture ID 10452668)

type II secretion system (T2SS) F family protein may play a role in nonspecific adherence to surfaces

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
T2SSF pfam00482
Type II secretion system (T2SS), protein F; The original family covered both the regions found ...
 82-194 3.95e-07

Type II secretion system (T2SS), protein F; The original family covered both the regions found by the current model. The splitting of the family has allowed the related FlaJ_arch (archaeal FlaJ family) to be merged with it. Proteins with this domain in form a platform for the machiney of the Type II secretion system, as well as the Type 4 pili and the archaeal flagella. This domain seems to show some similarity to PF00664 but this may just be due to similarities in the TM helices (personal obs: C Yeats).


:

Pssm-ID: 425708 [Multi-domain]  Cd Length: 119  Bit Score: 47.33  E-value: 3.95e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092724574  82 IGACLSSGMPLSQA-MAAAADGANPELAEPLRQCSARLSVGaHSTWESLAATTGLV--PLATAGRRAAESGTVLAQALED 158
Cdd:pfam00482   5 LATLLRAGLPLVEAlEILAEEAENGPLREELRRIAERVREG-GSLSEALARTPSSVfpPLLVALIAAGESGGNLAEVLER 83

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1092724574 159 TAATYRSQAHDAAQAVAEKAGVLIAGPLALCFLPAF 194
Cdd:pfam00482  84 LADYLEEERELRRKIKAALLYPLILLVVALLVLLIL 119
 
Name Accession Description Interval E-value
T2SSF pfam00482
Type II secretion system (T2SS), protein F; The original family covered both the regions found ...
 82-194 3.95e-07

Type II secretion system (T2SS), protein F; The original family covered both the regions found by the current model. The splitting of the family has allowed the related FlaJ_arch (archaeal FlaJ family) to be merged with it. Proteins with this domain in form a platform for the machiney of the Type II secretion system, as well as the Type 4 pili and the archaeal flagella. This domain seems to show some similarity to PF00664 but this may just be due to similarities in the TM helices (personal obs: C Yeats).


Pssm-ID: 425708 [Multi-domain]  Cd Length: 119  Bit Score: 47.33  E-value: 3.95e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092724574  82 IGACLSSGMPLSQA-MAAAADGANPELAEPLRQCSARLSVGaHSTWESLAATTGLV--PLATAGRRAAESGTVLAQALED 158
Cdd:pfam00482   5 LATLLRAGLPLVEAlEILAEEAENGPLREELRRIAERVREG-GSLSEALARTPSSVfpPLLVALIAAGESGGNLAEVLER 83

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1092724574 159 TAATYRSQAHDAAQAVAEKAGVLIAGPLALCFLPAF 194
Cdd:pfam00482  84 LADYLEEERELRRKIKAALLYPLILLVVALLVLLIL 119
TadC COG2064
Flp pilus assembly protein TadC [Extracellular structures];
85-207 4.23e-07

Flp pilus assembly protein TadC [Extracellular structures];


Pssm-ID: 441667 [Multi-domain]  Cd Length: 191  Bit Score: 48.27  E-value: 4.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092724574  85 CLSSGMPLSQ---AMAAAADGANPELAEPLRQCSARLSVGA--HSTWESLAATTGLVPL---ATAGRRAAESGTVLAQAL 156
Cdd:COG2064    61 CVEAGLSLDAalrRVAEELGASSGPLAEELARVLAELRAGRsrREALRNLAERTGVDEVrsfVTALIQAERYGTSIAEAL 140

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1092724574 157 EDTAATYRSQAHDAAQAVAEKAGVLIAGPLALCFLPAFVVLGLVPTIAGLA 207
Cdd:COG2064   141 RVQADEMREKRRQRAEEKAAKLPVKMLVPLILFILPALFIVLLGPAVIQIM 191
 
Name Accession Description Interval E-value
T2SSF pfam00482
Type II secretion system (T2SS), protein F; The original family covered both the regions found ...
 82-194 3.95e-07

Type II secretion system (T2SS), protein F; The original family covered both the regions found by the current model. The splitting of the family has allowed the related FlaJ_arch (archaeal FlaJ family) to be merged with it. Proteins with this domain in form a platform for the machiney of the Type II secretion system, as well as the Type 4 pili and the archaeal flagella. This domain seems to show some similarity to PF00664 but this may just be due to similarities in the TM helices (personal obs: C Yeats).


Pssm-ID: 425708 [Multi-domain]  Cd Length: 119  Bit Score: 47.33  E-value: 3.95e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092724574  82 IGACLSSGMPLSQA-MAAAADGANPELAEPLRQCSARLSVGaHSTWESLAATTGLV--PLATAGRRAAESGTVLAQALED 158
Cdd:pfam00482   5 LATLLRAGLPLVEAlEILAEEAENGPLREELRRIAERVREG-GSLSEALARTPSSVfpPLLVALIAAGESGGNLAEVLER 83

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1092724574 159 TAATYRSQAHDAAQAVAEKAGVLIAGPLALCFLPAF 194
Cdd:pfam00482  84 LADYLEEERELRRKIKAALLYPLILLVVALLVLLIL 119
TadC COG2064
Flp pilus assembly protein TadC [Extracellular structures];
85-207 4.23e-07

Flp pilus assembly protein TadC [Extracellular structures];


Pssm-ID: 441667 [Multi-domain]  Cd Length: 191  Bit Score: 48.27  E-value: 4.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092724574  85 CLSSGMPLSQ---AMAAAADGANPELAEPLRQCSARLSVGA--HSTWESLAATTGLVPL---ATAGRRAAESGTVLAQAL 156
Cdd:COG2064    61 CVEAGLSLDAalrRVAEELGASSGPLAEELARVLAELRAGRsrREALRNLAERTGVDEVrsfVTALIQAERYGTSIAEAL 140

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1092724574 157 EDTAATYRSQAHDAAQAVAEKAGVLIAGPLALCFLPAFVVLGLVPTIAGLA 207
Cdd:COG2064   141 RVQADEMREKRRQRAEEKAAKLPVKMLVPLILFILPALFIVLLGPAVIQIM 191
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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