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Conserved domains on  [gi|1092730899|ref|WP_070658225|]
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LppM family (lipo)protein [Actinomyces sp. HMSC075C01]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Glutenin_hmw super family cl26620
High molecular weight glutenin subunit; Members of this family include high molecular weight ...
232-272 1.66e-04

High molecular weight glutenin subunit; Members of this family include high molecular weight subunits of glutenin. This group of gluten proteins is thought to be largely responsible for the elastic properties of gluten, and hence, doughs. Indeed, glutenin high molecular weight subunits are classified as elastomeric proteins, because the glutenin network can withstand significant deformations without breaking, and return to the original conformation when the stress is removed. Elastomeric proteins differ considerably in amino acid sequence, but they are all polymers whose subunits consist of elastomeric domains, composed of repeated motifs, and non-elastic domains that mediate cross-linking between the subunits. The elastomeric domain motifs are all rich in glycine residues in addition to other hydrophobic residues. High molecular weight glutenin subunits have an extensive central elastomeric domain, flanked by two terminal non-elastic domains that form disulphide cross-links. The central elastomeric domain is characterized by the following three repeated motifs: PGQGQQ, GYYPTS[P/L]QQ, GQQ. It possesses overlapping beta-turns within and between the repeated motifs, and assumes a regular helical secondary structure with a diameter of approx. 1.9 nm and a pitch of approx. 1.5 nm.


The actual alignment was detected with superfamily member pfam03157:

Pssm-ID: 367362 [Multi-domain]  Cd Length: 786  Bit Score: 43.01  E-value: 1.66e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1092730899 232 PGQGYDPNQAFPAQ-QQPGYGAPGQQAGYGAPQAQPGYGAPG 272
Cdd:pfam03157 443 PGQGQQPGQEQPGQgQQPGQGQQGQQPGQPEQGQQPGQGQPG 484
 
Name Accession Description Interval E-value
Glutenin_hmw pfam03157
High molecular weight glutenin subunit; Members of this family include high molecular weight ...
232-272 1.66e-04

High molecular weight glutenin subunit; Members of this family include high molecular weight subunits of glutenin. This group of gluten proteins is thought to be largely responsible for the elastic properties of gluten, and hence, doughs. Indeed, glutenin high molecular weight subunits are classified as elastomeric proteins, because the glutenin network can withstand significant deformations without breaking, and return to the original conformation when the stress is removed. Elastomeric proteins differ considerably in amino acid sequence, but they are all polymers whose subunits consist of elastomeric domains, composed of repeated motifs, and non-elastic domains that mediate cross-linking between the subunits. The elastomeric domain motifs are all rich in glycine residues in addition to other hydrophobic residues. High molecular weight glutenin subunits have an extensive central elastomeric domain, flanked by two terminal non-elastic domains that form disulphide cross-links. The central elastomeric domain is characterized by the following three repeated motifs: PGQGQQ, GYYPTS[P/L]QQ, GQQ. It possesses overlapping beta-turns within and between the repeated motifs, and assumes a regular helical secondary structure with a diameter of approx. 1.9 nm and a pitch of approx. 1.5 nm.


Pssm-ID: 367362 [Multi-domain]  Cd Length: 786  Bit Score: 43.01  E-value: 1.66e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1092730899 232 PGQGYDPNQAFPAQ-QQPGYGAPGQQAGYGAPQAQPGYGAPG 272
Cdd:pfam03157 443 PGQGQQPGQEQPGQgQQPGQGQQGQQPGQPEQGQQPGQGQPG 484
COG3416 COG3416
Uncharacterized conserved protein, DUF2076 domain [Function unknown];
238-274 7.18e-03

Uncharacterized conserved protein, DUF2076 domain [Function unknown];


Pssm-ID: 442642 [Multi-domain]  Cd Length: 237  Bit Score: 36.92  E-value: 7.18e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1092730899 238 PNQAFPAQQQPGYGAPGQQAGYG-APQAQPGYGAPGQG 274
Cdd:COG3416    97 PPAPQPSQPGPQQQPAPPSGPWGqAAPQQPGYGQPQYG 134
 
Name Accession Description Interval E-value
Glutenin_hmw pfam03157
High molecular weight glutenin subunit; Members of this family include high molecular weight ...
232-272 1.66e-04

High molecular weight glutenin subunit; Members of this family include high molecular weight subunits of glutenin. This group of gluten proteins is thought to be largely responsible for the elastic properties of gluten, and hence, doughs. Indeed, glutenin high molecular weight subunits are classified as elastomeric proteins, because the glutenin network can withstand significant deformations without breaking, and return to the original conformation when the stress is removed. Elastomeric proteins differ considerably in amino acid sequence, but they are all polymers whose subunits consist of elastomeric domains, composed of repeated motifs, and non-elastic domains that mediate cross-linking between the subunits. The elastomeric domain motifs are all rich in glycine residues in addition to other hydrophobic residues. High molecular weight glutenin subunits have an extensive central elastomeric domain, flanked by two terminal non-elastic domains that form disulphide cross-links. The central elastomeric domain is characterized by the following three repeated motifs: PGQGQQ, GYYPTS[P/L]QQ, GQQ. It possesses overlapping beta-turns within and between the repeated motifs, and assumes a regular helical secondary structure with a diameter of approx. 1.9 nm and a pitch of approx. 1.5 nm.


Pssm-ID: 367362 [Multi-domain]  Cd Length: 786  Bit Score: 43.01  E-value: 1.66e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1092730899 232 PGQGYDPNQAFPAQ-QQPGYGAPGQQAGYGAPQAQPGYGAPG 272
Cdd:pfam03157 443 PGQGQQPGQEQPGQgQQPGQGQQGQQPGQPEQGQQPGQGQPG 484
COG3416 COG3416
Uncharacterized conserved protein, DUF2076 domain [Function unknown];
238-274 7.18e-03

Uncharacterized conserved protein, DUF2076 domain [Function unknown];


Pssm-ID: 442642 [Multi-domain]  Cd Length: 237  Bit Score: 36.92  E-value: 7.18e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1092730899 238 PNQAFPAQQQPGYGAPGQQAGYG-APQAQPGYGAPGQG 274
Cdd:COG3416    97 PPAPQPSQPGPQQQPAPPSGPWGqAAPQQPGYGQPQYG 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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