NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1092854812|ref|WP_070767346|]
View 

MULTISPECIES: hypothetical protein [Corynebacterium]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YqfX super family cl47470
Uncharacterized sporulation protein YqfX, contains DUF308 domain [Cell cycle control, cell ...
 22-108 9.73e-03

Uncharacterized sporulation protein YqfX, contains DUF308 domain [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG5921:

Pssm-ID: 444622  Cd Length: 83  Bit Score: 33.42  E-value: 9.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092854812  22 PGNDSRTIGVLALIFGVGGLLMsWMIvggILGVFGIVLGIIAMAKalsakkrvqaaggdavisGSFGLGVVGIVTGIAAV 101
Cdd:COG5921    16 RSNAGRGLGIIALVLSILSLFF-LPI---LLGPAGIILGFIARRR------------------GAKTLGNWAIGLGAVSI 73


                  ....*..
gi 1092854812 102 VVSLMLY 108
Cdd:COG5921    74 LLGLFIL 80
 
Name Accession Description Interval E-value
YqfX COG5921
Uncharacterized sporulation protein YqfX, contains DUF308 domain [Cell cycle control, cell ...
 22-108 9.73e-03

Uncharacterized sporulation protein YqfX, contains DUF308 domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444622  Cd Length: 83  Bit Score: 33.42  E-value: 9.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092854812  22 PGNDSRTIGVLALIFGVGGLLMsWMIvggILGVFGIVLGIIAMAKalsakkrvqaaggdavisGSFGLGVVGIVTGIAAV 101
Cdd:COG5921    16 RSNAGRGLGIIALVLSILSLFF-LPI---LLGPAGIILGFIARRR------------------GAKTLGNWAIGLGAVSI 73


                  ....*..
gi 1092854812 102 VVSLMLY 108
Cdd:COG5921    74 LLGLFIL 80
 
Name Accession Description Interval E-value
YqfX COG5921
Uncharacterized sporulation protein YqfX, contains DUF308 domain [Cell cycle control, cell ...
 22-108 9.73e-03

Uncharacterized sporulation protein YqfX, contains DUF308 domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444622  Cd Length: 83  Bit Score: 33.42  E-value: 9.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092854812  22 PGNDSRTIGVLALIFGVGGLLMsWMIvggILGVFGIVLGIIAMAKalsakkrvqaaggdavisGSFGLGVVGIVTGIAAV 101
Cdd:COG5921    16 RSNAGRGLGIIALVLSILSLFF-LPI---LLGPAGIILGFIARRR------------------GAKTLGNWAIGLGAVSI 73


                  ....*..
gi 1092854812 102 VVSLMLY 108
Cdd:COG5921    74 LLGLFIL 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH