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Conserved domains on  [gi|1093475509|ref|WP_070851085|]
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MULTISPECIES: tetratricopeptide repeat protein [Corynebacterium]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11419012)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4700 super family cl27810
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
201-372 1.34e-06

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


The actual alignment was detected with superfamily member COG4700:

Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 49.11  E-value: 1.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 201 KSLAKDNADKVARHmIMAAVlmaeDPQRALEHARAAKDRAGRVGVvRETAGVAAYHAGEWKEALAELRAA-RRISGG-PG 278
Cdd:COG4700    52 ELRNSRDARRVQRA-ARNAL----DPGRELRELEKALEFADTVQN-RVRLADALLELGRYDEAIELYEEAlTGIFADdPH 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 279 MIAVMADCERGLGRPEKAIELARSEEAKQLDNESkTELAIVAAGARRDMGQIDEALVELETQDlnpDREDFEAARlfYAY 358
Cdd:COG4700   126 ILLGLAQALFELGRYAEALETLEKLIAKNPDFKS-SDAHLLYARALEALGDLEAAEAELEALA---RRYSGPEAR--YRY 199

                         170
                  ....*....|....
gi 1093475509 359 ADALVEAGRKDDAK 372
Cdd:COG4700   200 AKFLARQGRTAEAK 213
PRK12678 super family cl36163
transcription termination factor Rho; Provisional
 2-175 2.02e-06

transcription termination factor Rho; Provisional


The actual alignment was detected with superfamily member PRK12678:

Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 49.90  E-value: 2.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509   2 AEHEGPRSGEGRGNRGNRGSNRSHGRGEGgfngRNRNDRRGQGGGPGGRGRGGHGGHGGNRDSRGSRGFRRDDRDDRDFN 81
Cdd:PRK12678  122 PEAAQARERRERGEAARRGAARKAGEGGE----QPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERG 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509  82 RGDRNERGGRGGRGYNRNNRDDRNERGERGYNRNDRGDRNDRRGPGGRGGQGGRNFDRRGgkpRRSNRGGRFQDEKRTHR 161
Cdd:PRK12678  198 RDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEG---RGGRRGRRFRDRDRRGR 274

                         170
                  ....*....|....
gi 1093475509 162 TGPQRPGFREERIE 175
Cdd:PRK12678  275 RGGDGGNEREPELR 288
 
Name Accession Description Interval E-value
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
201-372 1.34e-06

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 49.11  E-value: 1.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 201 KSLAKDNADKVARHmIMAAVlmaeDPQRALEHARAAKDRAGRVGVvRETAGVAAYHAGEWKEALAELRAA-RRISGG-PG 278
Cdd:COG4700    52 ELRNSRDARRVQRA-ARNAL----DPGRELRELEKALEFADTVQN-RVRLADALLELGRYDEAIELYEEAlTGIFADdPH 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 279 MIAVMADCERGLGRPEKAIELARSEEAKQLDNESkTELAIVAAGARRDMGQIDEALVELETQDlnpDREDFEAARlfYAY 358
Cdd:COG4700   126 ILLGLAQALFELGRYAEALETLEKLIAKNPDFKS-SDAHLLYARALEALGDLEAAEAELEALA---RRYSGPEAR--YRY 199

                         170
                  ....*....|....
gi 1093475509 359 ADALVEAGRKDDAK 372
Cdd:COG4700   200 AKFLARQGRTAEAK 213
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 2-175 2.02e-06

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 49.90  E-value: 2.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509   2 AEHEGPRSGEGRGNRGNRGSNRSHGRGEGgfngRNRNDRRGQGGGPGGRGRGGHGGHGGNRDSRGSRGFRRDDRDDRDFN 81
Cdd:PRK12678  122 PEAAQARERRERGEAARRGAARKAGEGGE----QPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERG 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509  82 RGDRNERGGRGGRGYNRNNRDDRNERGERGYNRNDRGDRNDRRGPGGRGGQGGRNFDRRGgkpRRSNRGGRFQDEKRTHR 161
Cdd:PRK12678  198 RDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEG---RGGRRGRRFRDRDRRGR 274

                         170
                  ....*....|....
gi 1093475509 162 TGPQRPGFREERIE 175
Cdd:PRK12678  275 RGGDGGNEREPELR 288
 
Name Accession Description Interval E-value
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
201-372 1.34e-06

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 49.11  E-value: 1.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 201 KSLAKDNADKVARHmIMAAVlmaeDPQRALEHARAAKDRAGRVGVvRETAGVAAYHAGEWKEALAELRAA-RRISGG-PG 278
Cdd:COG4700    52 ELRNSRDARRVQRA-ARNAL----DPGRELRELEKALEFADTVQN-RVRLADALLELGRYDEAIELYEEAlTGIFADdPH 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 279 MIAVMADCERGLGRPEKAIELARSEEAKQLDNESkTELAIVAAGARRDMGQIDEALVELETQDlnpDREDFEAARlfYAY 358
Cdd:COG4700   126 ILLGLAQALFELGRYAEALETLEKLIAKNPDFKS-SDAHLLYARALEALGDLEAAEAELEALA---RRYSGPEAR--YRY 199

                         170
                  ....*....|....
gi 1093475509 359 ADALVEAGRKDDAK 372
Cdd:COG4700   200 AKFLARQGRTAEAK 213
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 223-385 1.95e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.99  E-value: 1.95e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 223 AEDPQRALEHARAAKDRAGRVGVVRETAGVAAYHAGEWKEALAELRAARRISGG-PGMIAVMADCERGLGRPEKAIELAR 301
Cdd:COG3914    57 AALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDnAEALFNLGNLLLALGRLEEALAALR 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 302 seEAKQLDNESkTELAIVAAGARRDMGQIDEALVELETQ-DLNPDRedfeaARLFYAYADALVEAGRKDDAKVWFTRCAK 380
Cdd:COG3914   137 --RALALNPDF-AEAYLNLGEALRRLGRLEEAIAALRRAlELDPDN-----AEALNNLGNALQDLGRLEEAIAAYRRALE 208


                  ....*
gi 1093475509 381 IDVDQ 385
Cdd:COG3914   209 LDPDN 213
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 2-175 2.02e-06

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 49.90  E-value: 2.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509   2 AEHEGPRSGEGRGNRGNRGSNRSHGRGEGgfngRNRNDRRGQGGGPGGRGRGGHGGHGGNRDSRGSRGFRRDDRDDRDFN 81
Cdd:PRK12678  122 PEAAQARERRERGEAARRGAARKAGEGGE----QPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERG 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509  82 RGDRNERGGRGGRGYNRNNRDDRNERGERGYNRNDRGDRNDRRGPGGRGGQGGRNFDRRGgkpRRSNRGGRFQDEKRTHR 161
Cdd:PRK12678  198 RDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEG---RGGRRGRRFRDRDRRGR 274

                         170
                  ....*....|....
gi 1093475509 162 TGPQRPGFREERIE 175
Cdd:PRK12678  275 RGGDGGNEREPELR 288
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 203-377 2.82e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.49  E-value: 2.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 203 LAKDNADKVARHMIMAAVLMAEDPQRALEHARAAKDRAGRVGVVRETAGVAAYHAGEWKEALAELRAARRISggPGMIAV 282
Cdd:COG2956   103 LELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD--PDCARA 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 283 ---MADCERGLGRPEKAIELArsEEAKQLDNESKTELAIVAAgARRDMGQIDEALVELE-TQDLNPDredfeaARLFYAY 358
Cdd:COG2956   181 lllLAELYLEQGDYEEAIAAL--ERALEQDPDYLPALPRLAE-LYEKLGDPEEALELLRkALELDPS------DDLLLAL 251

                         170
                  ....*....|....*....
gi 1093475509 359 ADALVEAGRKDDAKVWFTR 377
Cdd:COG2956   252 ADLLERKEGLEAALALLER 270
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 200-396 1.06e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.56  E-value: 1.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 200 LKSLAKDNADKVARHMIMAAVLMAE-DPQRALEHARAAKDRAGRVGVVRETAGVAAYHAGEWKEALAELRAARRISGG-P 277
Cdd:COG2956    31 LEEALELDPETVEAHLALGNLYRRRgEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDdA 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 278 GMIAVMADCERGLGRPEKAIELARSEEAKQLDNES-KTELAIVAagarRDMGQIDEALVELET-QDLNPDredfeAARLF 355
Cdd:COG2956   111 EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHaYCELAELY----LEQGDYDEAIEALEKaLKLDPD-----CARAL 181

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1093475509 356 YAYADALVEAGRKDDAKVWFTRCAKIDVDQmLDARERIEEL 396
Cdd:COG2956   182 LLLAELYLEQGDYEEAIAALERALEQDPDY-LPALPRLAEL 221
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 200-382 1.75e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.79  E-value: 1.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 200 LKSLAKDNADKVARHMIMAAVLM-AEDPQRALEHARAAKDRAGRVGVVRETAGVAAYHAGEWKEALAELRAARRISGGPG 278
Cdd:COG2956    65 HQKLLERDPDRAEALLELAQDYLkAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENA 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 279 MIAV-MADCERGLGRPEKAIELArsEEAKQLDNESkTELAIVAAGARRDMGQIDEALVELETQ-DLNPDredfeAARLFY 356
Cdd:COG2956   145 HAYCeLAELYLEQGDYDEAIEAL--EKALKLDPDC-ARALLLLAELYLEQGDYEEAIAALERAlEQDPD-----YLPALP 216

                         170       180
                  ....*....|....*....|....*.
gi 1093475509 357 AYADALVEAGRKDDAKVWFTRCAKID 382
Cdd:COG2956   217 RLAELYEKLGDPEEALELLRKALELD 242
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 251-382 1.94e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.25  E-value: 1.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 251 GVAAYHAGEWKEALAELRAARRISGG-PGMIAVMADCERGLGRPEKAIELARseEAKQLDNESkTELAIVAAGARRDMGQ 329
Cdd:COG4783    11 AQALLLAGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLH--EALELDPDE-PEARLNLGLALLKAGD 87

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1093475509 330 IDEALVELETQ-DLNPDRedfeaARLFYAYADALVEAGRKDDAKVWFTRCAKID 382
Cdd:COG4783    88 YDEALALLEKAlKLDPEH-----PEAYLRLARAYRALGRPDEAIAALEKALELD 136
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 197-303 2.14e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.71  E-value: 2.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 197 RQDLKSLAKDNADKVARHMIMAAVLMAE-DPQRALEHARAAKDRAGRVGVVRETAGVAAYHAGEWKEALAELRAARRISG 275
Cdd:COG2956   164 IEALEKALKLDPDCARALLLLAELYLEQgDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243

                          90       100
                  ....*....|....*....|....*...
gi 1093475509 276 GPGMIAVMADCERGLGRPEKAIELARSE 303
Cdd:COG2956   244 SDDLLLALADLLERKEGLEAALALLERQ 271
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 221-301 5.40e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 38.35  E-value: 5.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 221 LMAEDPQRALEHARAAKDRAGRVGVVRETAGVAAYHAGEWKEALAELRAARRISGGPGMIAVMADCERGLGRPEKAIELA 300
Cdd:COG3071   235 LQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAELARLLEQLGDPEEAAEHY 314


                  .
gi 1093475509 301 R 301
Cdd:COG3071   315 R 315
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
251-384 6.03e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 38.06  E-value: 6.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 251 GVAAYHAGEWKEALAELRAARRIS-GGPGMIAVMADCERGLGRPEKAIELARseeaKQLDNESKTELAIVAAG-ARRDMG 328
Cdd:COG0457    15 GLAYRRLGRYEEAIEDYEKALELDpDDAEALYNLGLAYLRLGRYEEALADYE----QALELDPDDAEALNNLGlALQALG 90

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1093475509 329 QIDEALVELET-QDLNPDRedfeaARLFYAYADALVEAGRKDDAKVWFTRCAKIDVD 384
Cdd:COG0457    91 RYEEALEDYDKaLELDPDD-----AEALYNLGLALLELGRYDEAIEAYERALELDPD 142
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 208-338 8.69e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 36.32  E-value: 8.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 208 ADKVARHMIMAAVLMAEDPQRALEHARAAKDRAGRVGVVRETAGVAAYHAGEWKEALAELRAARRISGG-PGMIAVMADC 286
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDePEARLNLGLA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1093475509 287 ERGLGRPEKAIELARSEEAKQLDNEsktELAIVAAGARRDMGQIDEALVELE 338
Cdd:COG4783    82 LLKAGDYDEALALLEKALKLDPEHP---EAYLRLARAYRALGRPDEAIAALE 130
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 197-371 9.18e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 37.97  E-value: 9.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 197 RQDLKSLAKDNADKVARHMIMAAVLMA-EDPQRALEHARAAKDRAGRVGVVRE-TAGVAAYHAGEWKEALAELRAARRIS 274
Cdd:COG3071    36 EKLLSKAAEHSEAPLLAYLLAARAAQAlGDYERRDEYLAQALELAPEAELAVLlTRAELLLDQGQAEQALATLEALRAGA 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093475509 275 GG-PGMIAVMADCERGLGRPEKAIELARS-EEAKQLDNESKTELAIVAAGARRDMGQIDEALVELETQDLnpDREDFEAA 352
Cdd:COG3071   116 PRhPQVLRLLLQAYRQLGDWEELLELLPAlRKHKALSAEEAQALERRAYLGLLRQAARDAEALKALWKAL--PRAERRDP 193

                         170
                  ....*....|....*....
gi 1093475509 353 RLFYAYADALVEAGRKDDA 371
Cdd:COG3071   194 ELAAAYARALIALGDHDEA 212
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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