|
Name |
Accession |
Description |
Interval |
E-value |
| LutB |
COG1139 |
L-lactate utilization protein LutB, contains a ferredoxin-type domain [Energy production and ... |
22-486 |
0e+00 |
|
L-lactate utilization protein LutB, contains a ferredoxin-type domain [Energy production and conversion];
Pssm-ID: 440754 [Multi-domain] Cd Length: 465 Bit Score: 762.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 22 LRGTRGFTAAAHEELKNTRMRENVGHATRSIRKKRAHVVAEKNDWEQLRLAGSHIKRDVMARLPELLEQFEESVTNAGGH 101
Cdd:COG1139 3 KASSEDFKERAREALADEQLRKALDRATDTLRAKRAKAVAELPDWEALREAARAIKDHALANLDEYLEQFEANATANGGH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 102 VHWARDAAEANRIITDLVKETGEEKVVKIKSMATQEIGLNEALADAGITARETDLAELIVQLADDMPSHILVPAIHRNRE 181
Cdd:COG1139 83 VHWARDAEEANRIVLDIAREKGAKKVVKSKSMVTEEIGLNEALEAAGIEVVETDLGEYIVQLAGEPPSHIVMPAIHKNRE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 182 DIREIFLNGIPgvDPDLKANPADLAEASRKFLREQFMEAKVAISGANFGVAETGTVAVVESEGNGRMCLTLPETLISVMG 261
Cdd:COG1139 163 QIAELFHEKLG--TEPLTDDPEELTRAAREHLREKFLEADVGITGANFAVAETGTIVLVTNEGNARLCTTLPKVHIAVMG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 262 IEKLLPTFQDLEVFLQLLPRSSTGERMNPYTSLWTGTT---DGDGPKNFHIVLLDNGRSATLADPIGREALKCIRCSACL 338
Cdd:COG1139 241 IEKLVPTLEDLEVFLRLLPRSATGQRITTYTSLITGPRrpgEGDGPEEFHLVLLDNGRSAMLADPEFREALRCIRCGACL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 339 NICPVYEHVGGHAYGSVYPGPIGAILSPQLTGMDSYddpnASLPYASSLCGACFEVCPVRIDIPAALLELRHRKVTEHR- 417
Cdd:COG1139 321 NVCPVYRRVGGHAYGSVYPGPIGAVLTPLLHGLEKA----ADLPYASTLCGACTEVCPVKIPIPELLLELRERIVEEGLt 396
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1093476587 418 PPVEGKLFATLGFIMGNQKLWDMSAKMTSLARVLGLKDGEIHTLPLFLSGWSDVRDTPIPPKKPFRSLW 486
Cdd:COG1139 397 PPAEKLAMKAWAWVMSNPKLYRLALRLARRALKLLPRGGGIRRLPGPLGGWTKGRDLPAPAKESFRDWW 465
|
|
| TIGR00273 |
TIGR00273 |
iron-sulfur cluster-binding protein; Members of this family have a perfect 4Fe-4S binding ... |
36-475 |
5.92e-156 |
|
iron-sulfur cluster-binding protein; Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters. [Energy metabolism, Electron transport]
Pssm-ID: 129374 [Multi-domain] Cd Length: 432 Bit Score: 451.63 E-value: 5.92e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 36 LKNTRMRENVGHATRSIRKKRAHVVAEKNDWEQLRLAGSHIKRDVMARLPELLEQFEESVTNAGGHVHWARDAAEANRII 115
Cdd:TIGR00273 1 IKDGILREALRNAQERLRANRKLLVEELGYWEEWRELVKEIKLKVLENLDFYLDQLKENVTQRGGHVYYAKTAEEARKII 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 116 TDLVKETGEEKVVKIKSMATQEIGLNEALADAGITARETDLAELIVQLADDMPSHILVPAIHRNREDIREIFLNGIPGVD 195
Cdd:TIGR00273 81 GKVAQEKNGKKVVKSKSMVSEEIGLNEVLEKIGIEVWETDLGELILQLDGDPPSHIVVPALHKNRQQIGEILKERLGYEG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 196 PDlkaNPADLAEASRKFLREQFMEAKVAISGANFGVAETGTVAVVESEGNGRMCLTLPETLISVMGIEKLLPTFQDLEVF 275
Cdd:TIGR00273 161 EE---SPEVLAREARKFMREKFLSADIGISGCNFAIAETGSIFLVENEGNGRLSTTLPKTHIAVMGIEKIVPTFDDELVL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 276 LQLLPRSSTGERMNPYTSLWTG---TTDGDGPKNFHIVLLDNGRSATLADPIgREALKCIRCSACLNICPVYEHVGGHAY 352
Cdd:TIGR00273 238 KSMLARSAVGTRLTAYINVLTGprqEGDVDGPEEFHLILLDNGRSNILATEF-REVLACIRCGACQNECPVYRHIGGHWY 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 353 GSVYPGPIGAILSPQLTGMDSYDDpnasLPYASSLCGACFEVCPVRIDIPAALLELRHRKVTEHRPPVEGKlFATLGFIM 432
Cdd:TIGR00273 317 GSIYPGPIGAVWSPLLGGYTDYKH----LPYLSSLCGACREVCPVKIPLPELIREHRSDKVEKGRHSGMEK-LAMKMFAK 391
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1093476587 433 GNQK--LWDMSAKMTSLArvlgLKDGEIHTLPLFLSGWSDVRDTP 475
Cdd:TIGR00273 392 MASDgaLWKFGLKMAQFF----SPLGKLLAPIGPVKEWASVRDLP 432
|
|
| LUD_dom |
pfam02589 |
LUD domain; This entry represents a domain found in lactate utilization proteins B (LutB) and ... |
88-312 |
4.26e-49 |
|
LUD domain; This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterized proteins. LutB and LutC are encoded by th conserved LutABC operon in bacteria. They are involved in lactate utilization and is implicated in the oxidative conversion of L-lactate into pyruvate
Pssm-ID: 426855 Cd Length: 188 Bit Score: 167.40 E-value: 4.26e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 88 LEQFEESVTNAGGHVHWARDAAEANRIITDLVKETGeekvvkiksmatqeiglnealadAGITARETDLAELIvqladdm 167
Cdd:pfam02589 1 LEEFKENLEANGAEVYYAKTAEEALEYILELIKEGG-----------------------VVSEGGSTDLGELG------- 50
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 168 pshiLVPAIHRNREDIREIFlngipgvdpdlkanPADLAEASRKFLREQFMEAKVAISGANFGVAETGTVAVVESEGNGR 247
Cdd:pfam02589 51 ----LAPALHSGRYEVLDLF--------------EEKLTAEAREELREKALTADVGITGANFAIAETGTLVLVDGEGNRR 112
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1093476587 248 MCLTLPETLISVMGIEKLLPTFQDLEVFLQLLPRSSTGERMNPYTSLWTG---TTDGD--------GPKNFHIVLL 312
Cdd:pfam02589 113 LLSFLPKVHIAVVGINKIVPDLEDAVKRLRLAPRNATRQKLTPYITFISGpsrTADIElvlvvgvhGPGELHVILV 188
|
|
| PRK06259 |
PRK06259 |
succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional |
331-411 |
5.10e-07 |
|
succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Pssm-ID: 235756 [Multi-domain] Cd Length: 486 Bit Score: 52.32 E-value: 5.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 331 CIRCSACLNICPVYEHvgghaygSVYPGPIgaiLSPQLT--GMDSYDDPNASLP------YASSLCGACFEVCPVRIDIP 402
Cdd:PRK06259 135 CIECLSCVSTCPARKV-------SDYPGPT---FMRQLArfAFDPRDEGDREKEafdeglYNCTTCGKCVEVCPKEIDIP 204
|
90
....*....|
gi 1093476587 403 AALLE-LRHR 411
Cdd:PRK06259 205 GKAIEkLRAL 214
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| LutB |
COG1139 |
L-lactate utilization protein LutB, contains a ferredoxin-type domain [Energy production and ... |
22-486 |
0e+00 |
|
L-lactate utilization protein LutB, contains a ferredoxin-type domain [Energy production and conversion];
Pssm-ID: 440754 [Multi-domain] Cd Length: 465 Bit Score: 762.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 22 LRGTRGFTAAAHEELKNTRMRENVGHATRSIRKKRAHVVAEKNDWEQLRLAGSHIKRDVMARLPELLEQFEESVTNAGGH 101
Cdd:COG1139 3 KASSEDFKERAREALADEQLRKALDRATDTLRAKRAKAVAELPDWEALREAARAIKDHALANLDEYLEQFEANATANGGH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 102 VHWARDAAEANRIITDLVKETGEEKVVKIKSMATQEIGLNEALADAGITARETDLAELIVQLADDMPSHILVPAIHRNRE 181
Cdd:COG1139 83 VHWARDAEEANRIVLDIAREKGAKKVVKSKSMVTEEIGLNEALEAAGIEVVETDLGEYIVQLAGEPPSHIVMPAIHKNRE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 182 DIREIFLNGIPgvDPDLKANPADLAEASRKFLREQFMEAKVAISGANFGVAETGTVAVVESEGNGRMCLTLPETLISVMG 261
Cdd:COG1139 163 QIAELFHEKLG--TEPLTDDPEELTRAAREHLREKFLEADVGITGANFAVAETGTIVLVTNEGNARLCTTLPKVHIAVMG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 262 IEKLLPTFQDLEVFLQLLPRSSTGERMNPYTSLWTGTT---DGDGPKNFHIVLLDNGRSATLADPIGREALKCIRCSACL 338
Cdd:COG1139 241 IEKLVPTLEDLEVFLRLLPRSATGQRITTYTSLITGPRrpgEGDGPEEFHLVLLDNGRSAMLADPEFREALRCIRCGACL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 339 NICPVYEHVGGHAYGSVYPGPIGAILSPQLTGMDSYddpnASLPYASSLCGACFEVCPVRIDIPAALLELRHRKVTEHR- 417
Cdd:COG1139 321 NVCPVYRRVGGHAYGSVYPGPIGAVLTPLLHGLEKA----ADLPYASTLCGACTEVCPVKIPIPELLLELRERIVEEGLt 396
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1093476587 418 PPVEGKLFATLGFIMGNQKLWDMSAKMTSLARVLGLKDGEIHTLPLFLSGWSDVRDTPIPPKKPFRSLW 486
Cdd:COG1139 397 PPAEKLAMKAWAWVMSNPKLYRLALRLARRALKLLPRGGGIRRLPGPLGGWTKGRDLPAPAKESFRDWW 465
|
|
| TIGR00273 |
TIGR00273 |
iron-sulfur cluster-binding protein; Members of this family have a perfect 4Fe-4S binding ... |
36-475 |
5.92e-156 |
|
iron-sulfur cluster-binding protein; Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters. [Energy metabolism, Electron transport]
Pssm-ID: 129374 [Multi-domain] Cd Length: 432 Bit Score: 451.63 E-value: 5.92e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 36 LKNTRMRENVGHATRSIRKKRAHVVAEKNDWEQLRLAGSHIKRDVMARLPELLEQFEESVTNAGGHVHWARDAAEANRII 115
Cdd:TIGR00273 1 IKDGILREALRNAQERLRANRKLLVEELGYWEEWRELVKEIKLKVLENLDFYLDQLKENVTQRGGHVYYAKTAEEARKII 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 116 TDLVKETGEEKVVKIKSMATQEIGLNEALADAGITARETDLAELIVQLADDMPSHILVPAIHRNREDIREIFLNGIPGVD 195
Cdd:TIGR00273 81 GKVAQEKNGKKVVKSKSMVSEEIGLNEVLEKIGIEVWETDLGELILQLDGDPPSHIVVPALHKNRQQIGEILKERLGYEG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 196 PDlkaNPADLAEASRKFLREQFMEAKVAISGANFGVAETGTVAVVESEGNGRMCLTLPETLISVMGIEKLLPTFQDLEVF 275
Cdd:TIGR00273 161 EE---SPEVLAREARKFMREKFLSADIGISGCNFAIAETGSIFLVENEGNGRLSTTLPKTHIAVMGIEKIVPTFDDELVL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 276 LQLLPRSSTGERMNPYTSLWTG---TTDGDGPKNFHIVLLDNGRSATLADPIgREALKCIRCSACLNICPVYEHVGGHAY 352
Cdd:TIGR00273 238 KSMLARSAVGTRLTAYINVLTGprqEGDVDGPEEFHLILLDNGRSNILATEF-REVLACIRCGACQNECPVYRHIGGHWY 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 353 GSVYPGPIGAILSPQLTGMDSYDDpnasLPYASSLCGACFEVCPVRIDIPAALLELRHRKVTEHRPPVEGKlFATLGFIM 432
Cdd:TIGR00273 317 GSIYPGPIGAVWSPLLGGYTDYKH----LPYLSSLCGACREVCPVKIPLPELIREHRSDKVEKGRHSGMEK-LAMKMFAK 391
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1093476587 433 GNQK--LWDMSAKMTSLArvlgLKDGEIHTLPLFLSGWSDVRDTP 475
Cdd:TIGR00273 392 MASDgaLWKFGLKMAQFF----SPLGKLLAPIGPVKEWASVRDLP 432
|
|
| LUD_dom |
pfam02589 |
LUD domain; This entry represents a domain found in lactate utilization proteins B (LutB) and ... |
88-312 |
4.26e-49 |
|
LUD domain; This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterized proteins. LutB and LutC are encoded by th conserved LutABC operon in bacteria. They are involved in lactate utilization and is implicated in the oxidative conversion of L-lactate into pyruvate
Pssm-ID: 426855 Cd Length: 188 Bit Score: 167.40 E-value: 4.26e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 88 LEQFEESVTNAGGHVHWARDAAEANRIITDLVKETGeekvvkiksmatqeiglnealadAGITARETDLAELIvqladdm 167
Cdd:pfam02589 1 LEEFKENLEANGAEVYYAKTAEEALEYILELIKEGG-----------------------VVSEGGSTDLGELG------- 50
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 168 pshiLVPAIHRNREDIREIFlngipgvdpdlkanPADLAEASRKFLREQFMEAKVAISGANFGVAETGTVAVVESEGNGR 247
Cdd:pfam02589 51 ----LAPALHSGRYEVLDLF--------------EEKLTAEAREELREKALTADVGITGANFAIAETGTLVLVDGEGNRR 112
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1093476587 248 MCLTLPETLISVMGIEKLLPTFQDLEVFLQLLPRSSTGERMNPYTSLWTG---TTDGD--------GPKNFHIVLL 312
Cdd:pfam02589 113 LLSFLPKVHIAVVGINKIVPDLEDAVKRLRLAPRNATRQKLTPYITFISGpsrTADIElvlvvgvhGPGELHVILV 188
|
|
| Fer4_8 |
pfam13183 |
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ... |
330-399 |
6.51e-14 |
|
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Pssm-ID: 433017 [Multi-domain] Cd Length: 64 Bit Score: 66.57 E-value: 6.51e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 330 KCIRCSACLNICPVYEHVGGHAYGSVYPGPIGAIlspqltGMDSYDDPNASLPYASSLCGACFEVCPVRI 399
Cdd:pfam13183 1 RCIRCGACLAACPVYLVTGGRFPGDPRGGAAALL------GRLEALEGLAEGLWLCTLCGACTEVCPVGI 64
|
|
| LutC |
COG1556 |
L-lactate utilization protein LutC, contains LUD domain [Energy production and conversion]; |
85-313 |
8.45e-13 |
|
L-lactate utilization protein LutC, contains LUD domain [Energy production and conversion];
Pssm-ID: 441165 Cd Length: 206 Bit Score: 67.19 E-value: 8.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 85 PELLEQFEESVTNAGGHVHWARDAAEANRIITDLVKETGeekvvkIKSMATQEIGLNEALADAGITARETDlaelivqla 164
Cdd:COG1556 36 DDLVELFVERLEAVGGEVVRVTTEAELPAALAELLAEAG------LKRIVVPEPGLPAALQLAWDPLEELE--------- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 165 ddmpshilvpaihrnredireiflngipgvdpdlkaNPADLAEAsrkflreqfmeaKVAISGANFGVAETGTVAVVESEG 244
Cdd:COG1556 101 ------------------------------------DPAALEDA------------DVGITGAEFGIAETGTIVLDSGPD 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 245 NGRMCLTLPETLISVMGIEKLLPTFQDLevfLQLLPRSstgERMNPYTSLWTG---TTD--GD------GPKNFHIVLLD 313
Cdd:COG1556 133 QGRALSLLPEHHIVVVPASQIVPTMHEA---YARLREK---AGLPRNITFISGpskTADieQTlvlgahGPRRLHVILVE 206
|
|
| GlpC |
COG0247 |
Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy ... |
320-428 |
2.93e-10 |
|
Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy production and conversion];
Pssm-ID: 440017 [Multi-domain] Cd Length: 420 Bit Score: 62.40 E-value: 2.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 320 LADPIGREALKCIRCSACLNICPVYEHVGGHAYGSVY-PGPIGAILSPQLTgMDSYDDPNASLpYASSLCGACFEVCPVR 398
Cdd:COG0247 69 PWKELLDALDACVGCGFCRAMCPSYKATGDEKDSPRGrINLLREVLEGELP-LDLSEEVYEVL-DLCLTCKACETACPSG 146
|
90 100 110
....*....|....*....|....*....|
gi 1093476587 399 IDIPAALLELRHRKVTEHRPPVEGKLFATL 428
Cdd:COG0247 147 VDIADLIAEARAQLVERGGRPLRDRLLRTF 176
|
|
| PRK06259 |
PRK06259 |
succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional |
331-411 |
5.10e-07 |
|
succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Pssm-ID: 235756 [Multi-domain] Cd Length: 486 Bit Score: 52.32 E-value: 5.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 331 CIRCSACLNICPVYEHvgghaygSVYPGPIgaiLSPQLT--GMDSYDDPNASLP------YASSLCGACFEVCPVRIDIP 402
Cdd:PRK06259 135 CIECLSCVSTCPARKV-------SDYPGPT---FMRQLArfAFDPRDEGDREKEafdeglYNCTTCGKCVEVCPKEIDIP 204
|
90
....*....|
gi 1093476587 403 AALLE-LRHR 411
Cdd:PRK06259 205 GKAIEkLRAL 214
|
|
| LutB_C |
pfam11870 |
Lactate utilization protein B, C-terminal; This domain is functionally uncharacterized. This ... |
408-486 |
5.43e-06 |
|
Lactate utilization protein B, C-terminal; This domain is functionally uncharacterized. This domain is found at the C-terminal of a family of 4Fe-4S, iron-sulphur cluster binding proteins, including Lactate utilization protein B (LutB). These proteins have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4Fe-4S iron-sulphur clusters. This domain is found in LutB proteins in association with the LUD domain (pfam02589) and usually Fer4_8 (pfam13183). The LutABC operon is involved in lactate-utilization and is essential.
Pssm-ID: 432147 [Multi-domain] Cd Length: 86 Bit Score: 44.58 E-value: 5.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 408 LRHRKVTEHRPPVEGK----------LFATLGFIMGNQKLWDMSAKMTSLARVLglkdgeihtLPLFLSGWSDVRDTPIP 477
Cdd:pfam11870 2 LRHEPVGQGPGVIKGQgakrsaaerlAWKGFALAASSPGLYRLGTWLATRFRGL---------LPSKLKAWTRVRTFPKP 72
|
....*....
gi 1093476587 478 PKKPFRSLW 486
Cdd:pfam11870 73 AARSLHDLA 81
|
|
| COG2768 |
COG2768 |
Uncharacterized Fe-S cluster protein [Function unknown]; |
330-397 |
2.34e-04 |
|
Uncharacterized Fe-S cluster protein [Function unknown];
Pssm-ID: 442050 [Multi-domain] Cd Length: 74 Bit Score: 39.71 E-value: 2.34e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1093476587 330 KCIRCSACLNICPVyehvgghaygsvypgpiGAIlspqltgmdSYDDPNASLPYAS-SLCGACFEVCPV 397
Cdd:COG2768 12 KCIGCGACVKVCPV-----------------GAI---------SIEDGKAVIDPEKcIGCGACIEVCPV 54
|
|
| IorA |
COG4231 |
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ... |
306-397 |
2.90e-04 |
|
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];
Pssm-ID: 443375 [Multi-domain] Cd Length: 76 Bit Score: 39.64 E-value: 2.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 306 NFHIVLLDNGRSATladPIGREALKCIRCSACLNICPVyehvgghayGSVYPGPIGAILSPQL-TGmdsyddpnaslpya 384
Cdd:COG4231 2 NITVKILDNRTTAM---RYVIDEDKCTGCGACVKVCPA---------DAIEEGDGKAVIDPDLcIG-------------- 55
|
90
....*....|...
gi 1093476587 385 sslCGACFEVCPV 397
Cdd:COG4231 56 ---CGSCVQVCPV 65
|
|
| Fer4_10 |
pfam13237 |
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to ... |
324-396 |
2.96e-04 |
|
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.
Pssm-ID: 404174 [Multi-domain] Cd Length: 56 Bit Score: 38.77 E-value: 2.96e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1093476587 324 IGREALKCIRCSACLNICPVYEHVGGHAYGSVYPGPIgAILSPQLTGmdsyddpnaslpyasslCGACFEVCP 396
Cdd:pfam13237 2 VVIDPDKCIGCGRCTAACPAGLTRVGAIVERLEGEAV-RIGVWKCIG-----------------CGACVEACP 56
|
|
| NapF |
COG1145 |
Ferredoxin [Energy production and conversion]; |
330-407 |
5.23e-04 |
|
Ferredoxin [Energy production and conversion];
Pssm-ID: 440760 [Multi-domain] Cd Length: 238 Bit Score: 42.02 E-value: 5.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 330 KCIRCSACLNICPVyehvgghaygsvypgpiGAIlspqltgmdSYDDPNASLPYASSLC---GACFEVCPVR-IDIPAAL 405
Cdd:COG1145 183 KCIGCGLCVKVCPT-----------------GAI---------RLKDGKPQIVVDPDKCigcGACVKVCPVGaISLEPKE 236
|
..
gi 1093476587 406 LE 407
Cdd:COG1145 237 IE 238
|
|
| glpC |
PRK11168 |
anaerobic glycerol-3-phosphate dehydrogenase subunit C; |
331-426 |
5.39e-04 |
|
anaerobic glycerol-3-phosphate dehydrogenase subunit C;
Pssm-ID: 236869 [Multi-domain] Cd Length: 396 Bit Score: 42.55 E-value: 5.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 331 CIRCSACLNICPVYEhvgghaYGSVYPGP--IGailsPQ-----LTGMDSYDDpnaSLPYASSlCGACFEVCP--VRI-D 400
Cdd:PRK11168 9 CIKCTVCTTACPVAR------VNPLYPGPkqAG----PDgerlrLKDGALYDE---SLKYCSN-CKRCEVACPsgVKIgD 74
|
90 100
....*....|....*....|....*.
gi 1093476587 401 IPAallELRHRKVTEHRPPVEGKLFA 426
Cdd:PRK11168 75 IIQ---RARAKYVTERGPPLRDRILS 97
|
|
| Fer4_17 |
pfam13534 |
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to ... |
330-400 |
1.40e-03 |
|
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.
Pssm-ID: 433287 [Multi-domain] Cd Length: 61 Bit Score: 37.06 E-value: 1.40e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1093476587 330 KCIRCSACLNICPVYEHVGGHAYgsvypGPIGAILSPQLTGMDSYDdpnasLPYASSLCGACFEVCPVRID 400
Cdd:pfam13534 1 RCIQCGCCVDECPRYLLNGDEPK-----KLMRAAYLGDLEELQANK-----VANLCSECGLCEYACPMGLD 61
|
|
| Fer4_16 |
pfam13484 |
4Fe-4S double cluster binding domain; |
331-396 |
1.41e-03 |
|
4Fe-4S double cluster binding domain;
Pssm-ID: 463893 [Multi-domain] Cd Length: 65 Bit Score: 37.08 E-value: 1.41e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1093476587 331 CIRCSACLNICPVyehvgGHAYGSVYPGPIGAILSPQLTGMDSY-DDPNASLPY-ASSLCGACFEVCP 396
Cdd:pfam13484 1 CGSCGKCIDACPT-----GAIVGPEGVLDARRCISYLTIEKKGLiPDELRCLLGnRCYGCDICQDVCP 63
|
|
| Fer4_9 |
pfam13187 |
4Fe-4S dicluster domain; |
330-396 |
1.47e-03 |
|
4Fe-4S dicluster domain;
Pssm-ID: 463801 [Multi-domain] Cd Length: 50 Bit Score: 36.76 E-value: 1.47e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1093476587 330 KCIRCSACLNICPvyehvgghaYGSVYPGPIGAILSPQLTGMDSYDdpnaslpyasslCGACFEVCP 396
Cdd:pfam13187 1 KCTGCGACVAACP---------AGAIVPDLVGQTIRGDIAGLACIG------------CGACVDACP 46
|
|
| SdhB/FrdB |
COG0479 |
Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and ... |
327-416 |
2.54e-03 |
|
Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit is part of the Pathway/BioSystem: TCA cycle
Pssm-ID: 440247 [Multi-domain] Cd Length: 230 Bit Score: 39.73 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093476587 327 EALKCIRCSACLNICPVYehvgghAYGSVYPGPiGAILSPQLTGMDSYDDPNAS-LPYAS--------SLCGACFEVCPV 397
Cdd:COG0479 140 DLAECILCGACVAACPNV------WANPDFLGP-AALAQAYRFALDPRDEETEErLEALEdeegvwrcTTCGNCTEVCPK 212
|
90
....*....|....*....
gi 1093476587 398 RIDIPAALLELRhRKVTEH 416
Cdd:COG0479 213 GIPPTKAIAKLK-REALKR 230
|
|
| |
