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Conserved domains on  [gi|1098557363|ref|WP_071237678|]
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type IV pilus secretin PilQ family protein [Shewanella algae]

Protein Classification

type IV pilus secretin PilQ family protein( domain architecture ID 11494405)

type IV pilus secretin PilQ family protein such as Francisella tularensis PilQ, which could function as a pore for exit of the pilus but also as a channel for entry of heme and antimicrobial agents and uptake of transforming DNA, and Haemophilus influenzae competence protein E (ComE), which is a DNA transformation protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 122-683 0e+00

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 791.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 122 PYQGKAVDNVYRLTVNDEVMD------PQNKASSPFVNSIKNIDFRRLGDNGGELLVELRNSSVAANVEQVGSRLELKLY 195
Cdd:COG4796     3 PYETRVEGNALLVTLGPAAAAaaaaaaAFAEAAAAAANAIRDIDFRRGEDGEGRVVVDLSDPGVGVDIRQQGGKLVVDFL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 196 NTDIPSDMLYVMDVQDFATPVKSFETFKEDLTTRVLIDIKGDYEYNYKQDGNMFTL---AMNKVEREVQLEEEKKYSGKT 272
Cdd:COG4796    83 NTSLPEELRRRLDVTDFATPVQSIDAFQQGDNVRLVIEPRGDWEYSAYQTDNQFVVevkPLTEDENKLAQGGKKGYTGEK 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 273 LSLNFQNISVRTVLQIIADYNDFNLVTSDTVDGSITLRLDDVPWDQALDLILQTKGLDKRIEGNILMVAPAEELAIREEN 352
Cdd:COG4796   163 LSLNFQDIPVRSVLQLIADFTGLNLVISDSVTGNITLRLKNVPWDQALDIILKAKGLDKRKNGNVLLVAPAEELAAREKL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 353 QLKNKKKVsEELAPLYSEYLQVNYAKANDIANLLKGEGSSLLSKRGTVAVDERTNTLLVKDTADILENVHKLIEVLDVPI 432
Cdd:COG4796   243 ELEAKQQI-EELEPLRTEYIQLNYAKASDLAKLLKGQRGSLLSERGSVTVDERTNTLIVRDTPSKLEEIRRLIAKLDIPV 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 433 RQVLIESRMVTVKDDVSEDLGIRWGITDQQGNKGTSGSLEGAQDIANGTIPSIGDRLNVNLPAApSNATSIAFHVAKLAD 512
Cdd:COG4796   322 RQVLIEARIVEASDSFSRELGVRWGGSGANGTGNNRGGIGGSLNGTTAGTPLLPDGLNVNLPAA-NPAGSLGLTLAKLGG 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 513 GTVLDLELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYVESASSGAATVQFKKAVLSLRVTPQITPDNRVILDLE 592
Cdd:COG4796   401 GRLLDLELSALEAEGKGEIISSPRVITADQQEASIEQGTEIPYQESSSSGATSVEFKEAVLSLEVTPQITPDGRIILDLD 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 593 ITQDSQGKVVQtplGEAVSIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTSDKNERQELL 672
Cdd:COG4796   481 VSKDSPGETVA---GGVPAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKRELL 557

                         570
                  ....*....|.
gi 1098557363 673 IFVTPKIVTEE 683
Cdd:COG4796   558 IFITPRIVKDA 568
AMIN super family cl46341
AMIN domain; This N-terminal domain of various bacterial protein families is crucial for the ...
 48-136 1.43e-03

AMIN domain; This N-terminal domain of various bacterial protein families is crucial for the targetting of periplasmic or extracellular proteins to specific regions of the bacterial envelope. AMIN is derived from the N-terminal domain of AmiC, an N-acetylmuramoyl-l-alanine amidase of Escherichia coli which localizes to the septal ring during division and plays a key role in the separation of daughter cells. The AMIN domain is present in several protein families besides amidases suggesting that AMIN may represent a general targetting determinant involved in the localization of periplasmic protein complexes.


The actual alignment was detected with superfamily member pfam11741:

Pssm-ID: 480681  Cd Length: 96  Bit Score: 38.44  E-value: 1.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363  48 VDHQLELELVFDKPISePEINLSADPASIQLDFSDSISALEKAQIPINTAGVEQLSSMQ-DGDNLRLVLALKKVKPYQGK 126
Cdd:pfam11741   6 TDDGTELELETSGGEK-YQVFTLSNPNRLVIDIPGAQLGLPLKRIENPSPGIKSVRVGQfDPNTVRVVVDLDGSVLPQVP 84

                          90
                  ....*....|
gi 1098557363 127 AVDNVYRLTV 136
Cdd:pfam11741  85 VFKSGEGLVV 94
 
Name Accession Description Interval E-value
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 122-683 0e+00

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 791.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 122 PYQGKAVDNVYRLTVNDEVMD------PQNKASSPFVNSIKNIDFRRLGDNGGELLVELRNSSVAANVEQVGSRLELKLY 195
Cdd:COG4796     3 PYETRVEGNALLVTLGPAAAAaaaaaaAFAEAAAAAANAIRDIDFRRGEDGEGRVVVDLSDPGVGVDIRQQGGKLVVDFL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 196 NTDIPSDMLYVMDVQDFATPVKSFETFKEDLTTRVLIDIKGDYEYNYKQDGNMFTL---AMNKVEREVQLEEEKKYSGKT 272
Cdd:COG4796    83 NTSLPEELRRRLDVTDFATPVQSIDAFQQGDNVRLVIEPRGDWEYSAYQTDNQFVVevkPLTEDENKLAQGGKKGYTGEK 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 273 LSLNFQNISVRTVLQIIADYNDFNLVTSDTVDGSITLRLDDVPWDQALDLILQTKGLDKRIEGNILMVAPAEELAIREEN 352
Cdd:COG4796   163 LSLNFQDIPVRSVLQLIADFTGLNLVISDSVTGNITLRLKNVPWDQALDIILKAKGLDKRKNGNVLLVAPAEELAAREKL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 353 QLKNKKKVsEELAPLYSEYLQVNYAKANDIANLLKGEGSSLLSKRGTVAVDERTNTLLVKDTADILENVHKLIEVLDVPI 432
Cdd:COG4796   243 ELEAKQQI-EELEPLRTEYIQLNYAKASDLAKLLKGQRGSLLSERGSVTVDERTNTLIVRDTPSKLEEIRRLIAKLDIPV 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 433 RQVLIESRMVTVKDDVSEDLGIRWGITDQQGNKGTSGSLEGAQDIANGTIPSIGDRLNVNLPAApSNATSIAFHVAKLAD 512
Cdd:COG4796   322 RQVLIEARIVEASDSFSRELGVRWGGSGANGTGNNRGGIGGSLNGTTAGTPLLPDGLNVNLPAA-NPAGSLGLTLAKLGG 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 513 GTVLDLELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYVESASSGAATVQFKKAVLSLRVTPQITPDNRVILDLE 592
Cdd:COG4796   401 GRLLDLELSALEAEGKGEIISSPRVITADQQEASIEQGTEIPYQESSSSGATSVEFKEAVLSLEVTPQITPDGRIILDLD 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 593 ITQDSQGKVVQtplGEAVSIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTSDKNERQELL 672
Cdd:COG4796   481 VSKDSPGETVA---GGVPAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKRELL 557

                         570
                  ....*....|.
gi 1098557363 673 IFVTPKIVTEE 683
Cdd:COG4796   558 IFITPRIVKDA 568
IV_pilus_PilQ TIGR02515
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
 270-680 0e+00

type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]


Pssm-ID: 274173 [Multi-domain]  Cd Length: 418  Bit Score: 531.12  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 270 GKTLSLNFQNISVRTVLQIIADYNDFNLVTSDTVDGSITLRLDDVPWDQALDLILQTKGLDKRIEGNILMVAPAEELAIR 349
Cdd:TIGR02515   1 GEKISLNFQDIPVRTVLQVIAEFTGLNIVVSDSVQGNITLRLKNVPWDQALDIVLKSKGLDKRRDGNIIYIAPLDELAAQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 350 EENQLKnKKKVSEELAPLYSEYLQVNYAKANDIANLLK---GEGSSLLSKRGTVAVDERTNTLLVKDTADILENVHKLIE 426
Cdd:TIGR02515  81 EKDELE-AKKQIENLEPLQTELIQLNYAKASDIAKVLTgvtGGSGGLLSPRGSVTVDPRTNTLIVTDTPENLARIRKLIA 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 427 VLDVPIRQVLIESRMVTVKDDVSEDLGIRWGITDQQGNK-----GTSGSLEGAQDIANGTI-PSIGDRLNVNLPAAPSNA 500
Cdd:TIGR02515 160 ELDIPVRQVLIEARIVEATDSFSRELGVRWGITDKNGNGngtagGIGGNNGTTATGAGGTGnPPFGDNLNVNLATATTAA 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 501 tSIAFHVAKLADGTVLDLELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYVESASSGAATVQFKKAVLSLRVTPQ 580
Cdd:TIGR02515 240 -GISFALGKIGSGRLLDLELSALESEGKGEIISSPRVLTANNKEAKIEQGTEIPYQQTSSSGATSVEFKEAVLSLEVTPQ 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 581 ITPDNRVILDLEITQDSQGkVVQTPLGEAVSIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFR 660
Cdd:TIGR02515 319 ITPDGRIIMDLLVSKDSPG-VVAQAGGGVPAIDKQEINTQVLVKNGETVVIGGIYEQTQTNSEDKVPLLGDIPVLGNLFK 397

                         410       420
                  ....*....|....*....|
gi 1098557363 661 NTSDKNERQELLIFVTPKIV 680
Cdd:TIGR02515 398 KTGKSDEKSELLIFITPRIV 417
hofQ PRK13568
DNA uptake porin HofQ;
285-680 3.19e-130

DNA uptake porin HofQ;


Pssm-ID: 237430 [Multi-domain]  Cd Length: 381  Bit Score: 389.48  E-value: 3.19e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 285 VLQIIADYNDFNLVTSDTVDGSITLRLDDVPWDQALDLILQTKGLDKRIEGNILMVAPAEELairEENQLKNKKKVSEE- 363
Cdd:PRK13568    1 VLQALADYQQLNLVTAPGVGGNLSLRLIEVPWEQALAIILRMGKLSAEREGNVLMVFPEQEI---QERQQKTKQQAAPQe 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 364 -LAPLYSEYLQVNYAKANDIANLLKGEGSSLLSKRGTVAVDERTNTLLVKDTADILENVHKLIEVLDVPIRQVLIESRMV 442
Cdd:PRK13568   78 qMLPLANLTLTLQYADAEEVADSLQSQRGGLLSPRGSVTADKRTNTLLIRDTPAALAQLKNWLIELDLPLQQVQLAAHIV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 443 TVKDDVSEDLGIRWGITDqqgNKGTSGSLEGAQdiangtipsigdrLNVNLPAaPSNATSIAFHVAKLaDGTVLDLELSA 522
Cdd:PRK13568  158 TISSESLQELGVRWGMGE---GKQGNTALRIND-------------FNVNLPL-PNPAASAGFHLARL-GGRLLDLELSA 219

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 523 LEQENKGEIIASPRITTSNQKAAYIEQGVEIPY-VESASSGAATVQFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKV 601
Cdd:PRK13568  220 LEQENQVDIIASPRLFTSHQQTASIKQGTEIPYtVSSGKSGSTSIEFKEAVLGMEVTPKILRNGRITLKLKISQNMPGRT 299

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1098557363 602 VQTPLGEAVSIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTSDKNERQELLIFVTPKIV 680
Cdd:PRK13568  300 IKRGEGEMLAIDKQEIQTQVTVKDGETIVLGGIFQQQKRQSVNKVPLLGDIPLLGALFRQDTQQQSRRELVIFITPKLI 378
Secretin pfam00263
Bacterial type II and III secretion system protein;
522-680 9.67e-55

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 184.26  E-value: 9.67e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 522 ALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYVESASSGA---ATVQFKKAVLSLRVTPQITPDNRVILDLEITQDSq 598
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSTTGGtttTTVEFKDAGLSLKVTPQVTPDGTITLKINPEVSS- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 599 gkVVQTPLGEAVSIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTSDKNERQELLIFVTPK 678
Cdd:pfam00263  80 --PDGNGGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIFITPR 157


                  ..
gi 1098557363 679 IV 680
Cdd:pfam00263 158 IV 159
STN smart00965
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ...
 295-343 5.15e-06

Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.


Pssm-ID: 198033 [Multi-domain]  Cd Length: 52  Bit Score: 44.03  E-value: 5.15e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1098557363  295 FNLVTSD--TVDGSITLRLDDVPWDQALDLILQTKGLD-KRIEGNILMVAPA 343
Cdd:smart00965   1 LNFVYDPalVAGRRVSLLLGNVTVEQALDRLLAGTGLTyRRIGGNTIVLSPA 52
AMIN pfam11741
AMIN domain; This N-terminal domain of various bacterial protein families is crucial for the ...
 48-136 1.43e-03

AMIN domain; This N-terminal domain of various bacterial protein families is crucial for the targetting of periplasmic or extracellular proteins to specific regions of the bacterial envelope. AMIN is derived from the N-terminal domain of AmiC, an N-acetylmuramoyl-l-alanine amidase of Escherichia coli which localizes to the septal ring during division and plays a key role in the separation of daughter cells. The AMIN domain is present in several protein families besides amidases suggesting that AMIN may represent a general targetting determinant involved in the localization of periplasmic protein complexes.


Pssm-ID: 463338  Cd Length: 96  Bit Score: 38.44  E-value: 1.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363  48 VDHQLELELVFDKPISePEINLSADPASIQLDFSDSISALEKAQIPINTAGVEQLSSMQ-DGDNLRLVLALKKVKPYQGK 126
Cdd:pfam11741   6 TDDGTELELETSGGEK-YQVFTLSNPNRLVIDIPGAQLGLPLKRIENPSPGIKSVRVGQfDPNTVRVVVDLDGSVLPQVP 84

                          90
                  ....*....|
gi 1098557363 127 AVDNVYRLTV 136
Cdd:pfam11741  85 VFKSGEGLVV 94
 
Name Accession Description Interval E-value
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 122-683 0e+00

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 791.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 122 PYQGKAVDNVYRLTVNDEVMD------PQNKASSPFVNSIKNIDFRRLGDNGGELLVELRNSSVAANVEQVGSRLELKLY 195
Cdd:COG4796     3 PYETRVEGNALLVTLGPAAAAaaaaaaAFAEAAAAAANAIRDIDFRRGEDGEGRVVVDLSDPGVGVDIRQQGGKLVVDFL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 196 NTDIPSDMLYVMDVQDFATPVKSFETFKEDLTTRVLIDIKGDYEYNYKQDGNMFTL---AMNKVEREVQLEEEKKYSGKT 272
Cdd:COG4796    83 NTSLPEELRRRLDVTDFATPVQSIDAFQQGDNVRLVIEPRGDWEYSAYQTDNQFVVevkPLTEDENKLAQGGKKGYTGEK 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 273 LSLNFQNISVRTVLQIIADYNDFNLVTSDTVDGSITLRLDDVPWDQALDLILQTKGLDKRIEGNILMVAPAEELAIREEN 352
Cdd:COG4796   163 LSLNFQDIPVRSVLQLIADFTGLNLVISDSVTGNITLRLKNVPWDQALDIILKAKGLDKRKNGNVLLVAPAEELAAREKL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 353 QLKNKKKVsEELAPLYSEYLQVNYAKANDIANLLKGEGSSLLSKRGTVAVDERTNTLLVKDTADILENVHKLIEVLDVPI 432
Cdd:COG4796   243 ELEAKQQI-EELEPLRTEYIQLNYAKASDLAKLLKGQRGSLLSERGSVTVDERTNTLIVRDTPSKLEEIRRLIAKLDIPV 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 433 RQVLIESRMVTVKDDVSEDLGIRWGITDQQGNKGTSGSLEGAQDIANGTIPSIGDRLNVNLPAApSNATSIAFHVAKLAD 512
Cdd:COG4796   322 RQVLIEARIVEASDSFSRELGVRWGGSGANGTGNNRGGIGGSLNGTTAGTPLLPDGLNVNLPAA-NPAGSLGLTLAKLGG 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 513 GTVLDLELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYVESASSGAATVQFKKAVLSLRVTPQITPDNRVILDLE 592
Cdd:COG4796   401 GRLLDLELSALEAEGKGEIISSPRVITADQQEASIEQGTEIPYQESSSSGATSVEFKEAVLSLEVTPQITPDGRIILDLD 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 593 ITQDSQGKVVQtplGEAVSIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTSDKNERQELL 672
Cdd:COG4796   481 VSKDSPGETVA---GGVPAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKRELL 557

                         570
                  ....*....|.
gi 1098557363 673 IFVTPKIVTEE 683
Cdd:COG4796   558 IFITPRIVKDA 568
IV_pilus_PilQ TIGR02515
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
 270-680 0e+00

type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]


Pssm-ID: 274173 [Multi-domain]  Cd Length: 418  Bit Score: 531.12  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 270 GKTLSLNFQNISVRTVLQIIADYNDFNLVTSDTVDGSITLRLDDVPWDQALDLILQTKGLDKRIEGNILMVAPAEELAIR 349
Cdd:TIGR02515   1 GEKISLNFQDIPVRTVLQVIAEFTGLNIVVSDSVQGNITLRLKNVPWDQALDIVLKSKGLDKRRDGNIIYIAPLDELAAQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 350 EENQLKnKKKVSEELAPLYSEYLQVNYAKANDIANLLK---GEGSSLLSKRGTVAVDERTNTLLVKDTADILENVHKLIE 426
Cdd:TIGR02515  81 EKDELE-AKKQIENLEPLQTELIQLNYAKASDIAKVLTgvtGGSGGLLSPRGSVTVDPRTNTLIVTDTPENLARIRKLIA 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 427 VLDVPIRQVLIESRMVTVKDDVSEDLGIRWGITDQQGNK-----GTSGSLEGAQDIANGTI-PSIGDRLNVNLPAAPSNA 500
Cdd:TIGR02515 160 ELDIPVRQVLIEARIVEATDSFSRELGVRWGITDKNGNGngtagGIGGNNGTTATGAGGTGnPPFGDNLNVNLATATTAA 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 501 tSIAFHVAKLADGTVLDLELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYVESASSGAATVQFKKAVLSLRVTPQ 580
Cdd:TIGR02515 240 -GISFALGKIGSGRLLDLELSALESEGKGEIISSPRVLTANNKEAKIEQGTEIPYQQTSSSGATSVEFKEAVLSLEVTPQ 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 581 ITPDNRVILDLEITQDSQGkVVQTPLGEAVSIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFR 660
Cdd:TIGR02515 319 ITPDGRIIMDLLVSKDSPG-VVAQAGGGVPAIDKQEINTQVLVKNGETVVIGGIYEQTQTNSEDKVPLLGDIPVLGNLFK 397

                         410       420
                  ....*....|....*....|
gi 1098557363 661 NTSDKNERQELLIFVTPKIV 680
Cdd:TIGR02515 398 KTGKSDEKSELLIFITPRIV 417
hofQ PRK13568
DNA uptake porin HofQ;
285-680 3.19e-130

DNA uptake porin HofQ;


Pssm-ID: 237430 [Multi-domain]  Cd Length: 381  Bit Score: 389.48  E-value: 3.19e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 285 VLQIIADYNDFNLVTSDTVDGSITLRLDDVPWDQALDLILQTKGLDKRIEGNILMVAPAEELairEENQLKNKKKVSEE- 363
Cdd:PRK13568    1 VLQALADYQQLNLVTAPGVGGNLSLRLIEVPWEQALAIILRMGKLSAEREGNVLMVFPEQEI---QERQQKTKQQAAPQe 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 364 -LAPLYSEYLQVNYAKANDIANLLKGEGSSLLSKRGTVAVDERTNTLLVKDTADILENVHKLIEVLDVPIRQVLIESRMV 442
Cdd:PRK13568   78 qMLPLANLTLTLQYADAEEVADSLQSQRGGLLSPRGSVTADKRTNTLLIRDTPAALAQLKNWLIELDLPLQQVQLAAHIV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 443 TVKDDVSEDLGIRWGITDqqgNKGTSGSLEGAQdiangtipsigdrLNVNLPAaPSNATSIAFHVAKLaDGTVLDLELSA 522
Cdd:PRK13568  158 TISSESLQELGVRWGMGE---GKQGNTALRIND-------------FNVNLPL-PNPAASAGFHLARL-GGRLLDLELSA 219

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 523 LEQENKGEIIASPRITTSNQKAAYIEQGVEIPY-VESASSGAATVQFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKV 601
Cdd:PRK13568  220 LEQENQVDIIASPRLFTSHQQTASIKQGTEIPYtVSSGKSGSTSIEFKEAVLGMEVTPKILRNGRITLKLKISQNMPGRT 299

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1098557363 602 VQTPLGEAVSIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTSDKNERQELLIFVTPKIV 680
Cdd:PRK13568  300 IKRGEGEMLAIDKQEIQTQVTVKDGETIVLGGIFQQQKRQSVNKVPLLGDIPLLGALFRQDTQQQSRRELVIFITPKLI 378
hofQ PRK10560
outer membrane porin HofQ; Provisional
 282-683 2.42e-98

outer membrane porin HofQ; Provisional


Pssm-ID: 182549 [Multi-domain]  Cd Length: 386  Bit Score: 307.51  E-value: 2.42e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 282 VRTVLQIIADYNDFNLVTSDTVDGSITLRLDDVPWDQALDLILQTKGLDKRIEGNILMVAPA----EELAIREENQLKNK 357
Cdd:PRK10560    7 VAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLILRQEGNILSVHSQawqnENIARQEAEQARAQ 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 358 KKVseelaPLYSEYLQVNYAKANDIANllkgEGSSLLSKRGTVAVDERTNTLLVKDTADILENVHKLIEVLDVPIRQVLI 437
Cdd:PRK10560   87 ANL-----PLENRSITLQYADAGELAK----AGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVEL 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 438 ESRMVTVKDDVSEDLGIRWGITDQQGnkgtSGSLegaqdianGTIPSIGDRLNVNlpaapsNATS-IAFHVAKLaDGTVL 516
Cdd:PRK10560  158 AAHIVTINEKSLRELGVKWTLADAQQ----AGGV--------GQVTTLGSDLSVA------TATTrVGFNIGRI-NGRLL 218

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 517 DLELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPY-VESASSGAATVQFKKAVLSLRVTPQITPDNRVILDLEITQ 595
Cdd:PRK10560  219 DLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYqVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQ 298

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 596 DSQGKVVQTPLGEAVSIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTSDKNERQELLIFV 675
Cdd:PRK10560  299 NVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGQDSVPLLGDIPWLGQLFRHDGKEDERRELVVFI 378


                  ....*...
gi 1098557363 676 TPKIVTEE 683
Cdd:PRK10560  379 TPRLVSSE 386
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 369-683 2.46e-71

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 234.82  E-value: 2.46e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 369 SEYLQVNYAKANDIANLLKGEGSSllSKRGTVAVDERTNTLLVKDTADILENVHKLIEVLDVPIRQVLIESRMVTVKDDV 448
Cdd:COG1450    17 RDVLRALYADAEDLAKVLRSLLGG--AAGVSVVADPRTNSLIVRATPEQLREIEELIEQLDVPRRQVLIEAKIVEVSLSD 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 449 SEDLGIRWGItdqqgnkgtsgsleGAQDIANGTIPSIGDRLNVNLPAAPSNATSIAFhvaklADGTVLDLELSALEQENK 528
Cdd:COG1450    95 LRELGIDWSA--------------LGGNGGGVNFGGTGSLGSLAAAGSLGGGLNLGL-----LGGGNFGALLNALESNGD 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 529 GEIIASPRITTSNQKAAYIEQGVEIPYVESASSGAA------TVQFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKVV 602
Cdd:COG1450   156 ANVLSSPSILTLNNQEAVIKVGQTVPYVTGSTTTSStgnpttTIEYVDVGITLKVTPQINEDGTVTLDINPEVSSVTGST 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 603 QTPLGEAVSIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTSDKNERQELLIFVTPKIVTE 682
Cdd:COG1450   236 TGGGNGLPTINKREISTTVRVKDGQTVVLGGLIRDEESESESKVPLLGDIPLLGRLFRSTSKSKEKTELVIFITPTIIRD 315


                  .
gi 1098557363 683 E 683
Cdd:COG1450   316 G 316
Secretin pfam00263
Bacterial type II and III secretion system protein;
522-680 9.67e-55

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 184.26  E-value: 9.67e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 522 ALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYVESASSGA---ATVQFKKAVLSLRVTPQITPDNRVILDLEITQDSq 598
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSTTGGtttTTVEFKDAGLSLKVTPQVTPDGTITLKINPEVSS- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 599 gkVVQTPLGEAVSIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTSDKNERQELLIFVTPK 678
Cdd:pfam00263  80 --PDGNGGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIFITPR 157


                  ..
gi 1098557363 679 IV 680
Cdd:pfam00263 158 IV 159
IV PHA00019
phage assembly protein
 273-680 1.10e-52

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 187.71  E-value: 1.10e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 273 LSLNFQNISVRTVLQIIADYNDFNLVTSDTVDGSITLR---LDDVPWDQALDLILQTKGLDKRIEGNILMV-----APAE 344
Cdd:PHA00019   24 LPVELNNSPIREFVSWYSQQTGKSVVLGPDVKGNVTVYsadVNPANLPQFFDSVLRANGFDLVAGGPAVVIkqnpnQEDY 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 345 ELAIREE-NQLKNKKKVS----EELAPLYSEYLQVNYAKANDIANLLKGEGSSLLSKRGTVAVDERTNTLLVKDTADILE 419
Cdd:PHA00019  104 ADDLRDSrDDVFYDNSVPsgapEVPNDLIVRTFNINNVRASDLLPLVKIFVKSNGAPGGSVTDLPGTNSLVVSGSASQLP 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 420 NVHKLIEVLDVPIRQVLIESRMVTVKD----DVSEDLGIRWGITDQQGNKGtsgslegaqdiangtipsigDRLNVNLPA 495
Cdd:PHA00019  184 ALADFISAIDVPRRQVLIEALIFETSLgdgvDLSFAAGLASGGKVAGGFNT--------------------ARLTTVLSS 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 496 ApsnatSIAFHVAklaDGTVLDLELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYV--------ESASSGAATVQ 567
Cdd:PHA00019  244 A-----GGSFGIF---NGNVLGLSVKALENSSNSRVLSRPRILTLSGQSGYISVGQNVPFVtgrvtgeaANVNNPFQTIE 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 568 FKKAVLSLRVTPQITPDNRVILDLEITQDSqgkVVQTPLGEAVSIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVP 647
Cdd:PHA00019  316 RKDVGVSLEVTPVVMGDGQLVLDIDTKADS---LSDSTIASDIITNQRSLQTTVQVKDGQTLLLGGLISSNNTDGDSSVP 392

                         410       420       430
                  ....*....|....*....|....*....|...
gi 1098557363 648 VLGDIPLVGFLFRNTSDKNERQELLIFVTPKIV 680
Cdd:PHA00019  393 FLSKIPLIGWLFRSKSDSNEQRTLYVLLTARVI 425
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 334-684 3.44e-51

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 187.59  E-value: 3.44e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 334 EGNILMVAPAEELAIREENQLKNKKKVSEELAPLYSEYLqvNYAKANDIAN----LLKGEGSSLLSKR------------ 397
Cdd:TIGR02517 203 RNNILIRAGSPEALERIKKLISQLDVPASEGGNVRVYYL--RNADAEELAKtlqgVFGGGGNEPGSSSspglggavnpgg 280

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 398 --------------GTVAVDERTNTLLVKDTADILENVHKLIEVLDVPIRQVLIESRMVTVKDDVSEDLGIRWGI----T 459
Cdd:TIGR02517 281 sqsaqaassasggsVSGSADKATNSLIITASPQDYKNIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELGVQWLIagtgG 360

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 460 DQQGNKGTSGSLEGAQDIANGTipSIGDRLnVNLPAAPSNATSIAFHVAKLADGTVLdleLSALEQENKGEIIASPRITT 539
Cdd:TIGR02517 361 GVNFSTGSPNSGSLLGASASAI--SLGSAG-IGLLVTSSSTTSGVGGTGGGPNLGVL---LNALKQDTGFNVLSTPSLLT 434

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 540 SNQKAAYIEQGVEIP-----YVESASSGAA----TVQFKKAVLSLRVTPQITPDNRVILDLEiTQDSQGKVVQTPLGEA- 609
Cdd:TIGR02517 435 LDNQEAEINVGQEVPvltgsYNTGTGGTNAnpfnTYQRKDVGIKLKVTPQINEGGTVRLEIY-QEVSSVAPTTVGSAASg 513

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1098557363 610 VSIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTSDKNERQELLIFVTPKIVTEEI 684
Cdd:TIGR02517 514 PTFNKREIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTTERTKTNLMVFITPRIIRDPE 588
type_III_yscC TIGR02516
type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to ...
 347-680 1.25e-37

type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274174 [Multi-domain]  Cd Length: 462  Bit Score: 146.37  E-value: 1.25e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 347 AIREENQLKNKKKVSEELAPLyseylqvNYAKANDI--------------ANLLK--------GEGSSLLSKRGTVAVDE 404
Cdd:TIGR02516 133 ALEKQDQGRAGNRQVVKVFPL-------KYASASDRtynyrdqkvtipgvATILRrllsggrqGAGGGRASASPKISADP 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 405 RTNTLLVKDTADILENVHKLIEVLDVPIRQVLIESRMVTVKDDVSEDLGIRWgitdqqgnkgtSGSLeGAQDIANGTIPS 484
Cdd:TIGR02516 206 RTNAVLIRDRPERMAIYEQLIQQLDVPPRLIEISAWIIDIDASDLSQLGVDW-----------QATL-GAGDRQTGFNVS 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 485 IGdrlnvnlpaAPSNATSIAFHVAklaDGTVLDLELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIpYVESasSGAA 564
Cdd:TIGR02516 274 AG---------AGLGATGSSIVTS---DGDYFMARVNALEQTGKAKIVSRPSVLTLENVQAVLDNNRTF-YVKV--SGER 338

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 565 TVQFKK--AVLSLRVTPQITPD----NRVILDLEITQDSQGKVVQTPLGEAVSIDTQRIGTQVLVDNGETIVLGGIYQQN 638
Cdd:TIGR02516 339 VADLESvtAGTSLRVTPRVIGDegaqRQIKLNVDIEDGQQKTDGTSTVDALPEIKRTEINTQARVGHGQSLLIGGYYRDE 418

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1098557363 639 LISRVSKVPVLGDIPLVGFLFRNTSDKNERQELLIFVTPKIV 680
Cdd:TIGR02516 419 SADSVDGIPLLGDIPLLGNLFRSTSKEKSRVVRLFLITPKIV 460
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 433-681 5.29e-35

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 138.46  E-value: 5.29e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 433 RQVLIESRMVTVKDDVSEDLGIRWGITDQQGNkgtsgslegaqdiangtiPSIGDRLNVNLPAAPSNATSIAFhVAKLAD 512
Cdd:COG4964   175 QQVMLKVRVAEVSRSVLKQLGINWSGLGSSGG------------------FSFGLLTGGLLSGLLGGATAGAF-SGFGFG 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 513 GTVLDLELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYVESASSGAATVQFKKAVLSLRVTPQITPDNRVILDL- 591
Cdd:COG4964   236 NASISATLDALEQNGLARVLAEPNLTALSGETASFLAGGEFPIPVAQGDGTITVEYKEFGVSLNFTPTVLSNGRISLKVa 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 592 -EITQ-DSQGKVVQTplGEAV-SIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTSDKNER 668
Cdd:COG4964   316 pEVSElDPSNAVTLN--GITIpGLTTRRAETTVELRSGQSFAIAGLLSSNTRQNVSKVPGLGDIPILGALFRSRSFQRNE 393

                         250
                  ....*....|...
gi 1098557363 669 QELLIFVTPKIVT 681
Cdd:COG4964   394 TELVIIVTPYLVK 406
pilus_MshL TIGR02519
pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, ...
 400-680 2.62e-29

pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, that is, outer membrane pore proteins associated with delivery of proteins from periplasm to the outside of the cell. Related families include GspD of type II secretion (TIGR02517), the YscC/HrcC family from type III secretion (TIGR02516), and the PilQ secretin of type IV pilus formation (TIGR02515). Members of this family are found in gene clusters associated with MSHA (mannose-sensitive hemagglutinin) and related pili, and appear to be the secretin of this pilus system. [Cell envelope, Surface structures]


Pssm-ID: 274176 [Multi-domain]  Cd Length: 290  Bit Score: 118.25  E-value: 2.62e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 400 VAVDERTNTLLVKDTADILENVHKLIEVLDVPI-RQVLIESRMVTVKDDVSEDLGIRWGITDQQGNKGTSGSLEGAQDIA 478
Cdd:TIGR02519   1 YIINPEAGLLTVTATPAQIRRVEEYLESLQERIhRQVLIEAKILEVTLSDNHQQGIDWSNFNGSGLARYKALGAANSNDS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 479 NGTIPSIG--DRLNVNLPAApsnatsiafhVAKLADGTVLdleLSALEQENKGEIIASPRITTSNQKAAYIEQG------ 550
Cdd:TIGR02519  81 SGNQFSSGlgFLDNIGLPTG----------VNSGFGFDSI---INFLATFGDTKVLSNPKVMALNNQPAVISVGdniryv 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 551 VEIPYVESASSGAATVQFKKAV------LSLRVTPQITPDNRVILDL----------EITQDSQGKVVQTPLGEavsIDT 614
Cdd:TIGR02519 148 TEESSTGTTGGTTSTASSDTRVdsvfsgIVLGVTPQISDDGKVILNVhpsisevkpqSIDLNPVGNGAEVALPE---ISV 224

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1098557363 615 QRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTSDKNERQELLIFVTPKIV 680
Cdd:TIGR02519 225 KEMSSVLRVKDGDTVVLGGLIDKKKSNTKTGLPFLGDIPGLGYLFGYKSKSKKKTELVIIIRPSVV 290
PRK15346 PRK15346
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
387-665 2.25e-24

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237950 [Multi-domain]  Cd Length: 499  Bit Score: 107.47  E-value: 2.25e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 387 KGEGSSLLSKRGTVAVDERTNTLLVKDTADILENVHKLIEVLDvpIRQVLIESRmVTVKD----DVSEdLGIRWGITDQQ 462
Cdd:PRK15346  225 AVEGSPASQALPVFSADPRQNAVIVRDRAANMAIYRSLITQLD--QRPQMIEIS-VSIIDvdagDINQ-LGIDWSASASL 300

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 463 GNKGTSGSLEGAQDIANGTIPSIGDRLNvnlpaapsnatsiaFHVakladgtvldlELSALEQENKGEIIASPRITTSNQ 542
Cdd:PRK15346  301 GGGKISFNSGFADGNASGFSTVISNTGN--------------FMV-----------RLNALEKNSKAKILSQPSVVTLNN 355

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 543 KAAYIE---------QGVEIPYVESASSGAAtvqfkkavlsLRVTPQITPDN---RVILDLEItQDSQ--GKVVQT-PLG 607
Cdd:PRK15346  356 IQAVLDknvtfytklQGEKVAKLESITTGSL----------LRVTPRLIDDNgtqKVMLNLNI-QDGQqsATQSETdPLP 424

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1098557363 608 EavsIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTSDK 665
Cdd:PRK15346  425 E---VQNSEIATQATLKAGQSLLLGGFIQDKQIESQNKIPLLGDIPLIGGLFRSTDKQ 479
Secretin_N pfam03958
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
 369-434 1.01e-13

Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.


Pssm-ID: 461109 [Multi-domain]  Cd Length: 68  Bit Score: 66.47  E-value: 1.01e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1098557363 369 SEYLQVNYAKANDIANLLK--GEGSSLLSKRGTVAVDERTNTLLVKDTADILENVHKLIEVLDVPIRQ 434
Cdd:pfam03958   1 TRVIPLKYASAEDLASALRslLGGSGLLSKRGSVVADPRTNSLIVSGPPEYVELVRQLIKQLDVPRAQ 68
PRK15339 PRK15339
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
406-665 8.06e-12

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237948 [Multi-domain]  Cd Length: 559  Bit Score: 68.26  E-value: 8.06e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 406 TNTLLVKDTADILENVHKLIEVLDVPIRQVLIESRMVTVKDDVSEDLGIRWgitdqqgnkgtSGSLegaqdiangtipSI 485
Cdd:PRK15339  274 TNSLLVKGTAEQVHFIEMLVKALDVAKRHVELSLWIIDLDKSDLEQLGVNW-----------SGSI------------TI 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 486 GDRLNVNLpaapsNATSIAfhvakLADGTVLDLELSALEQENKGEIIASPRITTS--------NQKAAYI----EQGVEI 553
Cdd:PRK15339  331 GDKLGVSL-----NQSSIS-----TLDGSRFIAAVMALEQKKKANVVSRPVVLTQenipaifdNNRTFYTklvgERNVAL 400

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363 554 PYVESASSgaatvqfkkavlsLRVTPQITPDNRVILDLEItQDSQGKVVQTPLGEAVS----IDTQRIGTQVLVDNGETI 629
Cdd:PRK15339  401 EHVTYGTM-------------ISVLPRFSADGQIEMSLDI-EDGNEKTPQSDTTTSVDalpeVGRTLISTIARVPQGKSL 466

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1098557363 630 VLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNTSDK 665
Cdd:PRK15339  467 LIGGYTRDANTDEVQSIPFLGSLPLIGSLFRYSSKN 502
STN smart00965
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ...
 295-343 5.15e-06

Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.


Pssm-ID: 198033 [Multi-domain]  Cd Length: 52  Bit Score: 44.03  E-value: 5.15e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1098557363  295 FNLVTSD--TVDGSITLRLDDVPWDQALDLILQTKGLD-KRIEGNILMVAPA 343
Cdd:smart00965   1 LNFVYDPalVAGRRVSLLLGNVTVEQALDRLLAGTGLTyRRIGGNTIVLSPA 52
STN pfam07660
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ...
 297-343 1.30e-05

Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.


Pssm-ID: 429580 [Multi-domain]  Cd Length: 51  Bit Score: 42.89  E-value: 1.30e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1098557363 297 LVTSDTVDG--SITLRLDDVPWDQALDLILQTKGLDKRIEGNILMVAPA 343
Cdd:pfam07660   3 LYDSDLVDGkqSVSLNVGNVTLEEALDQLLAGTGLSYEIGGNTIVLRPK 51
AMIN pfam11741
AMIN domain; This N-terminal domain of various bacterial protein families is crucial for the ...
 48-136 1.43e-03

AMIN domain; This N-terminal domain of various bacterial protein families is crucial for the targetting of periplasmic or extracellular proteins to specific regions of the bacterial envelope. AMIN is derived from the N-terminal domain of AmiC, an N-acetylmuramoyl-l-alanine amidase of Escherichia coli which localizes to the septal ring during division and plays a key role in the separation of daughter cells. The AMIN domain is present in several protein families besides amidases suggesting that AMIN may represent a general targetting determinant involved in the localization of periplasmic protein complexes.


Pssm-ID: 463338  Cd Length: 96  Bit Score: 38.44  E-value: 1.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098557363  48 VDHQLELELVFDKPISePEINLSADPASIQLDFSDSISALEKAQIPINTAGVEQLSSMQ-DGDNLRLVLALKKVKPYQGK 126
Cdd:pfam11741   6 TDDGTELELETSGGEK-YQVFTLSNPNRLVIDIPGAQLGLPLKRIENPSPGIKSVRVGQfDPNTVRVVVDLDGSVLPQVP 84

                          90
                  ....*....|
gi 1098557363 127 AVDNVYRLTV 136
Cdd:pfam11741  85 VFKSGEGLVV 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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