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Conserved domains on  [gi|1114023795|ref|WP_072046226|]
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MULTISPECIES: conjugative transfer protein MobI(A/C) [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MobI pfam19456
MobI protein; MobI is conserved across conjugative plasmids of incompatibility group C (IncC), ...
 23-138 3.91e-19

MobI protein; MobI is conserved across conjugative plasmids of incompatibility group C (IncC), integrative conjugative elements of the SXT/R391 family and numerous genomic islands mobilized by IncC plasmids. Alongside a relaxase of the MOBH1 family, this protein is essential to conjugative transfer of these elements and is likely a relaxosome component involved in recognition of the origin of transfer.


:

Pssm-ID: 466093  Cd Length: 116  Bit Score: 77.38  E-value: 3.91e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1114023795  23 LKSEASKILDEYWEAWKARNQLISQTTyanggrfiPGRFAPVLRKvgSSQKLTIVWKDFSPRFKNKIEHHGV---VVKPK 99
Cdd:pfam19456   1 LYAEAKALADRFWEAVKAEREKETGSE--------RGRLGLRVRR--RGNSLTIEWYRNRFYGKKGGGKRRIskyIAKGK 70

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1114023795 100 LGGYSVSCFKN-ALDWELEMIQETEDKIKPIRELLAEYHQ 138
Cdd:pfam19456  71 GKRYSKSAFSKfAKDWELELVEETEEELAEIRRQAAHLSK 110
 
Name Accession Description Interval E-value
MobI pfam19456
MobI protein; MobI is conserved across conjugative plasmids of incompatibility group C (IncC), ...
 23-138 3.91e-19

MobI protein; MobI is conserved across conjugative plasmids of incompatibility group C (IncC), integrative conjugative elements of the SXT/R391 family and numerous genomic islands mobilized by IncC plasmids. Alongside a relaxase of the MOBH1 family, this protein is essential to conjugative transfer of these elements and is likely a relaxosome component involved in recognition of the origin of transfer.


Pssm-ID: 466093  Cd Length: 116  Bit Score: 77.38  E-value: 3.91e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1114023795  23 LKSEASKILDEYWEAWKARNQLISQTTyanggrfiPGRFAPVLRKvgSSQKLTIVWKDFSPRFKNKIEHHGV---VVKPK 99
Cdd:pfam19456   1 LYAEAKALADRFWEAVKAEREKETGSE--------RGRLGLRVRR--RGNSLTIEWYRNRFYGKKGGGKRRIskyIAKGK 70

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1114023795 100 LGGYSVSCFKN-ALDWELEMIQETEDKIKPIRELLAEYHQ 138
Cdd:pfam19456  71 GKRYSKSAFSKfAKDWELELVEETEEELAEIRRQAAHLSK 110
 
Name Accession Description Interval E-value
MobI pfam19456
MobI protein; MobI is conserved across conjugative plasmids of incompatibility group C (IncC), ...
 23-138 3.91e-19

MobI protein; MobI is conserved across conjugative plasmids of incompatibility group C (IncC), integrative conjugative elements of the SXT/R391 family and numerous genomic islands mobilized by IncC plasmids. Alongside a relaxase of the MOBH1 family, this protein is essential to conjugative transfer of these elements and is likely a relaxosome component involved in recognition of the origin of transfer.


Pssm-ID: 466093  Cd Length: 116  Bit Score: 77.38  E-value: 3.91e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1114023795  23 LKSEASKILDEYWEAWKARNQLISQTTyanggrfiPGRFAPVLRKvgSSQKLTIVWKDFSPRFKNKIEHHGV---VVKPK 99
Cdd:pfam19456   1 LYAEAKALADRFWEAVKAEREKETGSE--------RGRLGLRVRR--RGNSLTIEWYRNRFYGKKGGGKRRIskyIAKGK 70

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1114023795 100 LGGYSVSCFKN-ALDWELEMIQETEDKIKPIRELLAEYHQ 138
Cdd:pfam19456  71 GKRYSKSAFSKfAKDWELELVEETEEELAEIRRQAAHLSK 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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