NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1115537469|ref|WP_072109665|]
View 

MULTISPECIES: DUF4376 domain-containing protein, partial [Shigella]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4376 super family cl16786
Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and ...
 1-54 4.66e-08

Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and is approximately 110 amino acids in length.


The actual alignment was detected with superfamily member pfam14301:

Pssm-ID: 433852  Cd Length: 102  Bit Score: 45.03  E-value: 4.66e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1115537469   1 DADNQQVKLSMPELEELAAAMVQaqvdRNDEIYRRQREMKEELSGLDDLASIRA 54
Cdd:pfam14301  53 LADNSTVTLTAEQLIALGQAVTQ----HVQACFDRAREHKAAIEAAETLEAVEA 102
 
Name Accession Description Interval E-value
DUF4376 pfam14301
Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and ...
 1-54 4.66e-08

Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and is approximately 110 amino acids in length.


Pssm-ID: 433852  Cd Length: 102  Bit Score: 45.03  E-value: 4.66e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1115537469   1 DADNQQVKLSMPELEELAAAMVQaqvdRNDEIYRRQREMKEELSGLDDLASIRA 54
Cdd:pfam14301  53 LADNSTVTLTAEQLIALGQAVTQ----HVQACFDRAREHKAAIEAAETLEAVEA 102
 
Name Accession Description Interval E-value
DUF4376 pfam14301
Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and ...
 1-54 4.66e-08

Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and is approximately 110 amino acids in length.


Pssm-ID: 433852  Cd Length: 102  Bit Score: 45.03  E-value: 4.66e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1115537469   1 DADNQQVKLSMPELEELAAAMVQaqvdRNDEIYRRQREMKEELSGLDDLASIRA 54
Cdd:pfam14301  53 LADNSTVTLTAEQLIALGQAVTQ----HVQACFDRAREHKAAIEAAETLEAVEA 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH