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Conserved domains on  [gi|1119205552|ref|WP_072213995|]
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DUF4376 domain-containing protein [Campylobacter coli]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4376 super family cl16786
Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and ...
 119-203 4.13e-05

Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and is approximately 110 amino acids in length.


The actual alignment was detected with superfamily member pfam14301:

Pssm-ID: 433852  Cd Length: 102  Bit Score: 41.18  E-value: 4.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119205552 119 TTFQIDTEAKINISGKVSEIMLANLNNTPLenisWIDKDNRIVTFSKDEFLEFGVNIAKYTESIIFKNDELRNKVKNATS 198
Cdd:pfam14301  21 KRIDTDPESRLRLMGVLLAAKLPGEQGTPA----WTLADNSTVTLTAEQLIALGQAVTQHVQACFDRAREHKAAIEAAET 96


                  ....*
gi 1119205552 199 LEELN 203
Cdd:pfam14301  97 LEAVE 101
 
Name Accession Description Interval E-value
DUF4376 pfam14301
Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and ...
 119-203 4.13e-05

Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and is approximately 110 amino acids in length.


Pssm-ID: 433852  Cd Length: 102  Bit Score: 41.18  E-value: 4.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119205552 119 TTFQIDTEAKINISGKVSEIMLANLNNTPLenisWIDKDNRIVTFSKDEFLEFGVNIAKYTESIIFKNDELRNKVKNATS 198
Cdd:pfam14301  21 KRIDTDPESRLRLMGVLLAAKLPGEQGTPA----WTLADNSTVTLTAEQLIALGQAVTQHVQACFDRAREHKAAIEAAET 96


                  ....*
gi 1119205552 199 LEELN 203
Cdd:pfam14301  97 LEAVE 101
 
Name Accession Description Interval E-value
DUF4376 pfam14301
Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and ...
 119-203 4.13e-05

Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and is approximately 110 amino acids in length.


Pssm-ID: 433852  Cd Length: 102  Bit Score: 41.18  E-value: 4.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119205552 119 TTFQIDTEAKINISGKVSEIMLANLNNTPLenisWIDKDNRIVTFSKDEFLEFGVNIAKYTESIIFKNDELRNKVKNATS 198
Cdd:pfam14301  21 KRIDTDPESRLRLMGVLLAAKLPGEQGTPA----WTLADNSTVTLTAEQLIALGQAVTQHVQACFDRAREHKAAIEAAET 96


                  ....*
gi 1119205552 199 LEELN 203
Cdd:pfam14301  97 LEAVE 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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