|
Name |
Accession |
Description |
Interval |
E-value |
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-328 |
0e+00 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 565.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKdtPGRIAGGAVRFEGTDLTQLQEK 84
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLP--PPGITSGEILFDGEDLLKLSEK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRYRGNELAMIFQEPMTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLVGIPRAEEVVDDYPHQLSGGMRQR 164
Cdd:COG0444 79 ELRKIRGREIQMIFQDPMTSLNPVMTVGDQIAEPLRIHGGLSKAEARERAIELLERVGLPDPERRLDRYPHELSGGMRQR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 165 VMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKEL 244
Cdd:COG0444 159 VMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEEL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 245 FENPQHPYTKGLIQSVPKLRQKVRRLESIPGNVPDLSAMPQGCKFAPRCPYVMERCLAQEPALLPLEGqaDRKSRCWLTE 324
Cdd:COG0444 239 FENPRHPYTRALLSSIPRLDPDGRRLIPIPGEPPSLLNPPSGCRFHPRCPYAMDRCREEEPPLREVGP--GHRVACHLYE 316
|
....
gi 1119351554 325 PDRP 328
Cdd:COG0444 317 EEAP 320
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-264 |
8.16e-158 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 452.22 E-value: 8.16e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDtPGRIAGGAVRFEGTDLTQ 80
Cdd:COG4172 2 MSMPLLSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLPD-PAAHPSGSILFDGQDLLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 81 LQEKDMRRYRGNELAMIFQEPMTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLVGIPRAEEVVDDYPHQLSGG 160
Cdd:COG4172 81 LSERELRRIRGNRIAMIFQEPMTSLNPLHTIGKQIAEVLRLHRGLSGAAARARALELLERVGIPDPERRLDAYPHQLSGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 161 MRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAP 240
Cdd:COG4172 161 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQGP 240
|
250 260
....*....|....*....|....
gi 1119351554 241 VKELFENPQHPYTKGLIQSVPKLR 264
Cdd:COG4172 241 TAELFAAPQHPYTRKLLAAEPRGD 264
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-321 |
2.42e-135 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 387.54 E-value: 2.42e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTpGRIaGGAVRFEGTDLTQ 80
Cdd:PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAN-GRI-GGSATFNGREILN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 81 LQEKDMRRYRGNELAMIFQEPMTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLVGIPRAEEVVDDYPHQLSGG 160
Cdd:PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 161 MRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAP 240
Cdd:PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 241 VKELFENPQHPYTKGLIQSVPKLRQKVRRLESIPGNVPDLSAMPQGCKFAPRCPYVMERClAQEPALLPLEGQadRKSRC 320
Cdd:PRK09473 246 ARDVFYQPSHPYSIGLLNAVPRLDAEGESLLTIPGNPPNLLRLPKGCPFQPRCPHAMEIC-SSAPPLEEFGPG--RLRAC 322
|
.
gi 1119351554 321 W 321
Cdd:PRK09473 323 F 323
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1-329 |
1.07e-128 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 370.60 E-value: 1.07e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEF-------RRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTpgriaGGAVRF 73
Cdd:COG4608 3 MAEPLLEVRDLKKHFpvrgglfGRTVGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPT-----SGEILF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 74 EGTDLTQLQEKDMRRYRgNELAMIFQEPMTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLVGIPRaeEVVDDY 153
Cdd:COG4608 78 DGQDITGLSGRELRPLR-RRMQMVFQDPYASLNPRMTVGDIIAEPLRIHGLASKAERRERVAELLELVGLRP--EHADRY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 154 PHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAG 233
Cdd:COG4608 155 PHEFSGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYLG 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 234 RVVEEAPVKELFENPQHPYTKGLIQSVPKLRQKVRRlESIP--GNVPDLSAMPQGCKFAPRCPYVMERCLAQEPALLPLE 311
Cdd:COG4608 235 KIVEIAPRDELYARPLHPYTQALLSAVPVPDPERRR-ERIVleGDVPSPLNPPSGCRFHTRCPYAQDRCATEEPPLREVG 313
|
330
....*....|....*...
gi 1119351554 312 GqaDRKSRCWLTEPDRPE 329
Cdd:COG4608 314 P--GHQVACHLAEEGSGV 329
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
5-320 |
3.44e-125 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 361.75 E-value: 3.44e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLkDTPGRIAGGAVRFEGTDLTQLQEK 84
Cdd:PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLI-DYPGRVMAEKLEFNGQDLQRISEK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRYRGNELAMIFQEPMTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLVGIPRAEEVVDDYPHQLSGGMRQR 164
Cdd:PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 165 VMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKEL 244
Cdd:PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1119351554 245 FENPQHPYTKGLIQSVPKLRQKVRRLESIPGNVPDLSAMPQGCKFAPRCPYVMERCLAQEPALLPLEGqadRKSRC 320
Cdd:PRK11022 242 FRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLAG---RQSKC 314
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
5-239 |
3.28e-123 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 352.96 E-value: 3.28e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKdtpgrIAGGAVRFEGTDLTQLQEK 84
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-----PTSGSIIFDGKDLLKLSRR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 dMRRYRGNELAMIFQEPMTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHAIhTLRLVGIPRAEEVVDDYPHQLSGGMRQR 164
Cdd:cd03257 76 -LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-LLLLVGVGLPEEVLNRYPHELSGGQRQR 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119351554 165 VMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEA 239
Cdd:cd03257 154 VAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
5-264 |
4.36e-112 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 334.95 E-value: 4.36e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFR-RDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTDLTQLQE 83
Cdd:COG1123 260 LLEVRNLSKRYPvRGKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSI-----LFDGKDLTKLSR 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 84 KDMRRYRGnELAMIFQEPMTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLVGIPraEEVVDDYPHQLSGGMRQ 163
Cdd:COG1123 335 RSLRELRR-RVQMVFQDPYSSLNPRMTVGDIIAEPLRLHGLLSRAERRERVAELLERVGLP--PDLADRYPHELSGGQRQ 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 164 RVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKE 243
Cdd:COG1123 412 RVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEE 491
|
250 260
....*....|....*....|.
gi 1119351554 244 LFENPQHPYTKGLIQSVPKLR 264
Cdd:COG1123 492 VFANPQHPYTRALLAAVPSLD 512
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-280 |
1.13e-101 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 308.37 E-value: 1.13e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSkLLEVQGLKTEFRrdGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLkDTPGRIaGGAVRFEGTDLTQ 80
Cdd:COG1123 1 MTP-LLEVRDLSVRYP--GGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLL-PHGGRI-SGEVLLDGRDLLE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 81 LQEKDmrryRGNELAMIFQEPMTSLNPVlRIGRQLEEPIMLHmGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGG 160
Cdd:COG1123 76 LSEAL----RGRRIGMVFQDPMTQLNPV-TVGDQIAEALENL-GLSRAEARARVLELLEAVGL---ERRLDRYPHQLSGG 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 161 MRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAP 240
Cdd:COG1123 147 QRQRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGP 226
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1119351554 241 VKELFENPQhpytkgLIQSVPKLRQKVRRLESIPGNVPDL 280
Cdd:COG1123 227 PEEILAAPQ------ALAAVPRLGAARGRAAPAAAAAEPL 260
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
5-314 |
4.00e-101 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 300.67 E-value: 4.00e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTpGRIAGGAVRFEGTDLTQLQEK 84
Cdd:COG4170 3 LLDIRNLTIEIDTPQGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDN-WHVTADRFRWNGIDLLKLSPR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRYRGNELAMIFQEPMTSLNPVLRIGRQLEEPIMLH----MGYSRKKAR-EHAIHTLRLVGIPRAEEVVDDYPHQLSG 159
Cdd:COG4170 82 ERRKIIGREIAMIFQEPSSCLDPSAKIGDQLIEAIPSWtfkgKWWQRFKWRkKRAIELLHRVGIKDHKDIMNSYPHELTE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 160 GMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEA 239
Cdd:COG4170 162 GECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESG 241
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 240 PVKELFENPQHPYTKGLIQSVPKLRQKVR---RLESIPGNVPDLSAMPQGCKFAPRCPYVMERCLaQEPALLPLEGQA 314
Cdd:COG4170 242 PTEQILKSPHHPYTKALLRSMPDFRQPLPhksRLNTLPGSIPPLQHLPIGCRLGPRCPYAQKKCV-ETPRLRKIKGHE 318
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-261 |
1.02e-100 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 306.25 E-value: 1.02e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAGGAVRFEGTDLTQ 80
Cdd:PRK15134 1 MTQPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 81 LQEKDMRRYRGNELAMIFQEPMTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLVGIPRAEEVVDDYPHQLSGG 160
Cdd:PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 161 MRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAP 240
Cdd:PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240
|
250 260
....*....|....*....|.
gi 1119351554 241 VKELFENPQHPYTKGLIQSVP 261
Cdd:PRK15134 241 AATLFSAPTHPYTQKLLNSEP 261
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
5-264 |
2.36e-99 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 302.76 E-value: 2.36e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEF-------RRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKdtpgriAGGAVRFEGTD 77
Cdd:COG4172 275 LLEARDLKVWFpikrglfRRTVGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIP------SEGEIRFDGQD 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 78 LTQLQEKDMRRYRgNELAMIFQEPMTSLNPVLRIGRQLEEPIMLH-MGYSRKKAREHAIHTLRLVGIPraEEVVDDYPHQ 156
Cdd:COG4172 349 LDGLSRRALRPLR-RRMQVVFQDPFGSLSPRMTVGQIIAEGLRVHgPGLSAAERRARVAEALEEVGLD--PAARHRYPHE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 157 LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVV 236
Cdd:COG4172 426 FSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVV 505
|
250 260
....*....|....*....|....*...
gi 1119351554 237 EEAPVKELFENPQHPYTKGLIQSVPKLR 264
Cdd:COG4172 506 EQGPTEQVFDAPQHPYTRALLAAAPLLE 533
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
2-263 |
2.82e-97 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 300.23 E-value: 2.82e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 2 TSKLLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAGGAVRF-----EGT 76
Cdd:PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLrrrsrQVI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 77 DLTQLQEKDMRRYRGNELAMIFQEPMTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLVGIPRAEEVVDDYPHQ 156
Cdd:PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 157 LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVV 236
Cdd:PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248
|
250 260
....*....|....*....|....*..
gi 1119351554 237 EEAPVKELFENPQHPYTKGLIQSVPKL 263
Cdd:PRK10261 249 ETGSVEQIFHAPQHPYTRALLAAVPQL 275
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-264 |
3.02e-94 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 280.15 E-value: 3.02e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTpgriaGGAVRFEGTDLTQLQEK 84
Cdd:COG1124 1 MLEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPW-----SGEVTFDGRPVTRRRRK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRyrgnELAMIFQEPMTSLNPVLRIGRQLEEPIMLHmgysRKKAREHAIHT-LRLVGIPraEEVVDDYPHQLSGGMRQ 163
Cdd:COG1124 76 AFRR----RVQMVFQDPYASLHPRHTVDRILAEPLRIH----GLPDREERIAElLEQVGLP--PSFLDRYPHQLSGGQRQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 164 RVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKE 243
Cdd:COG1124 146 RVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVAD 225
|
250 260
....*....|....*....|.
gi 1119351554 244 LFENPQHPYTKGLIQSVPKLR 264
Cdd:COG1124 226 LLAGPKHPYTRELLAASLAFE 246
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
24-257 |
6.08e-89 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 266.16 E-value: 6.08e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 24 AVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLkDTPGRIAGGAVRFEGTDLTQLqekdmrRYRGNELAMIFQEPMT 103
Cdd:TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLL-PPGLTQTSGEILLDGRPLLPL------SIRGRHIATIMQNPRT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 104 SLNPVLRIGRQLEEPIMLHMGYSrKKAREHAIHTLRLVGIPRAEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEP 183
Cdd:TIGR02770 74 AFNPLFTMGNHAIETLRSLGKLS-KQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119351554 184 TTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENPQHPYTKGLI 257
Cdd:TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLL 226
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
1-313 |
7.18e-86 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 261.82 E-value: 7.18e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGL------KTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtSLSIMRLLKDTPgriAGGAVRFE 74
Cdd:PRK11308 1 SQQPLLQAIDLkkhypvKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKS--TLARLLTMIETP---TGGELYYQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 75 GTDLTQ---LQEKDMRRyrgnELAMIFQEPMTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLVGIpRAEEVvD 151
Cdd:PRK11308 76 GQDLLKadpEAQKLLRQ----KIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGL-RPEHY-D 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 152 DYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMY 231
Cdd:PRK11308 150 RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMY 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 232 AGRVVEEAPVKELFENPQHPYTKGLIQSVPKLRQKVRRLE-SIPGNVPDLSAMPQGCKFAPRCPYVMERCLAQEPALLPL 310
Cdd:PRK11308 230 LGRCVEKGTKEQIFNNPRHPYTQALLSATPRLNPDDRRERiKLTGELPSPLNPPPGCAFNARCPRAFGRCRQEQPQLRDY 309
|
...
gi 1119351554 311 EGQ 313
Cdd:PRK11308 310 DGR 312
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
5-325 |
4.86e-85 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 259.64 E-value: 4.86e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFR-RDGGS--------VMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAggavrFEG 75
Cdd:PRK15079 8 LLEVADLKVHFDiKDGKQwfwqppktLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVA-----WLG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 76 TDLTQLQEKDMRRYRgNELAMIFQEPMTSLNPVLRIGRQLEEPI-MLHMGYSRKKAREHAIHTLRLVGIprAEEVVDDYP 154
Cdd:PRK15079 83 KDLLGMKDDEWRAVR-SDIQMIFQDPLASLNPRMTIGEIIAEPLrTYHPKLSRQEVKDRVKAMMLKVGL--LPNLINRYP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 155 HQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGR 234
Cdd:PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGH 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 235 VVEEAPVKELFENPQHPYTKGLIQSVPKLRQKVRRLESI---PGNVPDLSAMPQGCKFAPRCPYVMERCLAQEPallPLE 311
Cdd:PRK15079 240 AVELGTYDEVYHNPLHPYTKALMSAVPIPDPDLERNKTIqllEGELPSPINPPSGCVFRTRCPIAGPECAKTRP---VLE 316
|
330
....*....|....
gi 1119351554 312 GQADRKSRCWLTEP 325
Cdd:PRK15079 317 GSFRHAVSCLKVDP 330
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
5-314 |
3.71e-81 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 249.72 E-value: 3.71e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTpGRIAGGAVRFEGTDLTQLQEK 84
Cdd:PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN-WRVTADRMRFDDIDLLRLSPR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRYRGNELAMIFQEPMTSLNPVLRIGRQLEEPIMlhmGYSRKKA--------REHAIHTLRLVGIPRAEEVVDDYPHQ 156
Cdd:PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIP---GWTYKGRwwqrfgwrKRRAIELLHRVGIKDHKDAMRSFPYE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 157 LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVV 236
Cdd:PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 237 EEAPVKELFENPQHPYTKGLIQSVPKLRQKV---RRLESIPGNVPDLSAMPQGCKFAPRCPYVMERCLaQEPALLPLEGQ 313
Cdd:PRK15093 239 ETAPSKELVTTPHHPYTQALIRAIPDFGSAMphkSRLNTLPGAIPLLEHLPIGCRLGPRCPYAQRECI-ETPRLTGAKNH 317
|
.
gi 1119351554 314 A 314
Cdd:PRK15093 318 L 318
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
3-259 |
2.60e-66 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 209.31 E-value: 2.60e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 3 SKLLEVQGLKTEFR-RDG----GSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTd 77
Cdd:COG4167 2 SALLEVRNLSKTFKyRTGlfrrQQFEAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEI-----LINGH- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 78 ltQLQEKDmRRYRGNELAMIFQEPMTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLVGIPRaeEVVDDYPHQL 157
Cdd:COG4167 76 --KLEYGD-YKYRCKHIRMIFQDPNTSLNPRLNIGQILEEPLRLNTDLTAEEREERIFATLRLVGLLP--EHANFYPHML 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 158 SGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVE 237
Cdd:COG4167 151 SSGQKQRVALARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGEVVE 230
|
250 260
....*....|....*....|..
gi 1119351554 238 EAPVKELFENPQHPYTKGLIQS 259
Cdd:COG4167 231 YGKTAEVFANPQHEVTKRLIES 252
|
|
| PhnK |
COG4107 |
ABC-type phosphonate transport system, ATPase component PhnK [Inorganic ion transport and ... |
4-260 |
1.03e-65 |
|
ABC-type phosphonate transport system, ATPase component PhnK [Inorganic ion transport and metabolism];
Pssm-ID: 443283 [Multi-domain] Cd Length: 262 Bit Score: 207.74 E-value: 1.03e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 4 KLLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLKdtpGRIA--GGAVRFEG-----T 76
Cdd:COG4107 7 PLLSVRGLSKRYGPGCGTVVACRDVSFDLYPGEVLGIVGESGSGKS----TLLKCLY---FDLAptSGSVYYRDrdggpR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 77 DLTQLQEKDMRRYRGNELAMIFQEPMTSLNPVLRIGRQLEEPIML----HMGYSRKKAREHaihtLRLVGIPraEEVVDD 152
Cdd:COG4107 80 DLFALSEAERRRLRRTDWGMVYQNPRDGLRMDVSAGGNIAERLMAagerHYGDIRARALEW----LERVEIP--LERIDD 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 153 YPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYA 232
Cdd:COG4107 154 LPRTFSGGMQQRVQIARALVTNPRLLFLDEPTTGLDVSVQARLLDLIRRLQRELGLSMIVVTHDLGVIRLLADRTMVMKN 233
|
250 260
....*....|....*....|....*...
gi 1119351554 233 GRVVEEAPVKELFENPQHPYTKGLIQSV 260
Cdd:COG4107 234 GRVVESGLTDQVLEDPQHPYTQLLVSSV 261
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
6-261 |
3.26e-65 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 209.16 E-value: 3.26e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLK--DTPGRiagGAVRFEGTDLTQLQE 83
Cdd:COG1135 2 IELENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKS----TLIRCINllERPTS---GSVLVDGVDLTALSE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 84 KDMRRYRGNeLAMIFQEP--MTSlnpvlrigRQLEEPIML---HMGYSRKKAREHAIHTLRLVGIP-RAeevvDDYPHQL 157
Cdd:COG1135 75 RELRAARRK-IGMIFQHFnlLSS--------RTVAENVALpleIAGVPKAEIRKRVAELLELVGLSdKA----DAYPSQL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 158 SGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeeQEMG--MLLITHDLGVVAEMCDRVVVMYAGRV 235
Cdd:COG1135 142 SGGQKQRVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDIN--RELGltIVLITHEMDVVRRICDRVAVLENGRI 219
|
250 260
....*....|....*....|....*.
gi 1119351554 236 VEEAPVKELFENPQHPYTKGLIQSVP 261
Cdd:COG1135 220 VEQGPVLDVFANPQSELTRRFLPTVL 245
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
5-249 |
7.27e-63 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 199.34 E-value: 7.27e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLkDTPgriAGGAVRFEGTDLTQLQEK 84
Cdd:cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKS-TLIRCINGL-ERP---TSGSVLVDGTDLTLLSGK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRYRgNELAMIFQEpmtsLNpvLRIGRQLEEPIML---HMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGM 161
Cdd:cd03258 76 ELRKAR-RRIGMIFQH----FN--LLSSRTVFENVALpleIAGVPKAEIEERVLELLELVGL---EDKADAYPAQLSGGQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 162 RQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPV 241
Cdd:cd03258 146 KQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTV 225
|
....*...
gi 1119351554 242 KELFENPQ 249
Cdd:cd03258 226 EEVFANPQ 233
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-238 |
6.28e-62 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 196.80 E-value: 6.28e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSkLLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLkDTPgriAGGAVRFEGTDLTQ 80
Cdd:COG1136 1 MSP-LLELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKS-TLLNILGGL-DRP---TSGEVLIDGQDISS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 81 LQEKDMRRYRGNELAMIFQEPmtSLNPVLRIGRQLEEPIMLHmGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGG 160
Cdd:COG1136 75 LSERELARLRRRHIGFVFQFF--NLLPELTALENVALPLLLA-GVSRKERRERARELLERVGL---GDRLDHRPSQLSGG 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 161 MRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLgVVAEMCDRVVVMYAGRVVEE 238
Cdd:COG1136 149 QQQRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDP-ELAARADRVIRLRDGRIVSD 225
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
6-259 |
2.09e-61 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 196.46 E-value: 2.09e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEfrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKdtPG-RIAGGAVRFEGTDLTQLQek 84
Cdd:PRK10418 5 IELRNIALQ-----AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP--AGvRQTAGRVLLDGKPVAPCA-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 dmrrYRGNELAMIFQEPMTSLNPVLRIGRQLEEpIMLHMGYSRKKARehAIHTLRLVGIPRAEEVVDDYPHQLSGGMRQR 164
Cdd:PRK10418 76 ----LRGRKIATIMQNPRSAFNPLHTMHTHARE-TCLALGKPADDAT--LTAALEAVGLENAARVLKLYPFEMSGGMLQR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 165 VMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKEL 244
Cdd:PRK10418 149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228
|
250
....*....|....*
gi 1119351554 245 FENPQHPYTKGLIQS 259
Cdd:PRK10418 229 FNAPKHAVTRSLVSA 243
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
6-235 |
4.19e-59 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 189.24 E-value: 4.19e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLkDTPGRiagGAVRFEGTDLTQLQEKD 85
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKS-TLLNILGGL-DRPTS---GEVRVDGTDISKLSEKE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRYRGNELAMIFQEPmtSLNPVLRIGRQLEEPiMLHMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRV 165
Cdd:cd03255 76 LAAFRRRHIGFVFQSF--NLLPDLTALENVELP-LLLAGVPKKERRERAEELLERVGL---GDRLNHYPSELSGGQQQRV 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 166 MIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLgVVAEMCDRVVVMYAGRV 235
Cdd:cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAEYADRIIELRDGKI 218
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
5-277 |
4.93e-56 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 191.99 E-value: 4.93e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFRRDGG-------SVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAGGAVRFEGTD 77
Cdd:PRK10261 313 ILQVRNLVTRFPLRSGllnrvtrEVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 78 LTQLQEkdMRRyrgnELAMIFQEPMTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLVGIprAEEVVDDYPHQL 157
Cdd:PRK10261 393 PGKLQA--LRR----DIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGL--LPEHAWRYPHEF 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 158 SGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVE 237
Cdd:PRK10261 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE 544
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1119351554 238 EAPVKELFENPQHPYTKGLIQSVP------KLRQKVRRLESIPGNV 277
Cdd:PRK10261 545 IGPRRAVFENPQHPYTRKLMAAVPvadpsrQRPQRVLLSDDLPSNI 590
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
5-254 |
6.51e-56 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 181.73 E-value: 6.51e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSL-SIMRLLKdtpgrIAGGAVRFEGTDLTqLQE 83
Cdd:COG1126 1 MIEIENLHKSF----GDLEVLKGISLDVEKGEVVVIIGPSGSGKS-TLLrCINLLEE-----PDSGTITVDGEDLT-DSK 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 84 KDMRRYRGnELAMIFQepmtSLN--PVLRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGM 161
Cdd:COG1126 70 KDINKLRR-KVGMVFQ----QFNlfPHLTVLENVTLAPIKVKKMSKAEAEERAMELLERVGL---ADKADAYPAQLSGGQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 162 RQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQeMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPV 241
Cdd:COG1126 142 QQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLDVMRDLAKEG-MTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPP 220
|
250
....*....|...
gi 1119351554 242 KELFENPQHPYTK 254
Cdd:COG1126 221 EEFFENPQHERTR 233
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
7-260 |
7.10e-56 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 185.00 E-value: 7.10e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 7 EVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLKdtpgRIAGGAVRFEGTDLTQLQEKDM 86
Cdd:PRK11153 3 ELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKS-TLIRCINLLE----RPTSGRVLVDGQDLTALSEKEL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 87 RRYRgNELAMIFQEpmtsLNpvLRIGRQLEEPIMLHM---GYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQ 163
Cdd:PRK11153 78 RKAR-RQIGMIFQH----FN--LLSSRTVFDNVALPLelaGTPKAEIKARVTELLELVGL---SDKADRYPAQLSGGQKQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 164 RVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKE 243
Cdd:PRK11153 148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
|
250
....*....|....*..
gi 1119351554 244 LFENPQHPYTKGLIQSV 260
Cdd:PRK11153 228 VFSHPKHPLTREFIQST 244
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
2-258 |
1.30e-54 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 186.45 E-value: 1.30e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 2 TSKLLEVQGLKTEF-------RRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKdtpgriAGGAVRFE 74
Cdd:PRK15134 272 ASPLLDVEQLQVAFpirkgilKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN------SQGEIWFD 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 75 GTDLTQLQEKDMRRYRgNELAMIFQEPMTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHA-IHTLRLVGIprAEEVVDDY 153
Cdd:PRK15134 346 GQPLHNLNRRQLLPVR-HRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQvIAVMEEVGL--DPETRHRY 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 154 PHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAG 233
Cdd:PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502
|
250 260
....*....|....*....|....*
gi 1119351554 234 RVVEEAPVKELFENPQHPYTKGLIQ 258
Cdd:PRK15134 503 EVVEQGDCERVFAAPQQEYTRQLLA 527
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
5-248 |
3.93e-54 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 178.34 E-value: 3.93e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFR-----RDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLK--DTPgriAGGAVRFEGTD 77
Cdd:PRK10419 3 LLNVSGLSHHYAhgglsGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKS----TLARLLVglESP---SQGNVSWRGEP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 78 LTQLQEKDMRRYRGnELAMIFQEPMTSLNPVLRIGRQLEEPiMLHMGYSRKKAREH-AIHTLRLVGIPraEEVVDDYPHQ 156
Cdd:PRK10419 76 LAKLNRAQRKAFRR-DIQMVFQDSISAVNPRKTVREIIREP-LRHLLSLDKAERLArASEMLRAVDLD--DSVLDKRPPQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 157 LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVV 236
Cdd:PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231
|
250
....*....|....
gi 1119351554 237 EEAPVKEL--FENP 248
Cdd:PRK10419 232 ETQPVGDKltFSSP 245
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
5-272 |
1.01e-53 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 177.30 E-value: 1.01e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFRRDG-----GSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDtpgriAGGAVRFEGTDLT 79
Cdd:TIGR02769 2 LLEVRDVTHTYRTGGlfgakQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP-----AQGTVSFRGQDLY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 80 QLQEKDMRRYRgNELAMIFQEPMTSLNPVLRIGRQLEEPI--MLHMGYSRKKARehAIHTLRLVGIPraEEVVDDYPHQL 157
Cdd:TIGR02769 77 QLDRKQRRAFR-RDVQLVFQDSPSAVNPRMTVRQIIGEPLrhLTSLDESEQKAR--IAELLDMVGLR--SEDADKLPRQL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 158 SGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVE 237
Cdd:TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231
|
250 260 270
....*....|....*....|....*....|....*
gi 1119351554 238 EAPVKELFENpQHPYTKGLIQSVPKLRqKVRRLES 272
Cdd:TIGR02769 232 ECDVAQLLSF-KHPAGRNLQSAVLPEH-PVRRSIT 264
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-254 |
4.58e-53 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 174.40 E-value: 4.58e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTDLTQ 80
Cdd:COG1127 1 MSEPMIEVRNLTKSF----GDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEI-----LVDGQDITG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 81 LQEKDMRRYRgNELAMIFQEP--MTSLNpvlrigrqLEEPIML----HMGYSRKKAREHAIHTLRLVGIPRAEevvDDYP 154
Cdd:COG1127 72 LSEKELYELR-RRIGMLFQGGalFDSLT--------VFENVAFplreHTDLSEAEIRELVLEKLELVGLPGAA---DKMP 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 155 HQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGR 234
Cdd:COG1127 140 SELSGGMRKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGK 219
|
250 260
....*....|....*....|
gi 1119351554 235 VVEEAPVKELFENPqHPYTK 254
Cdd:COG1127 220 IIAEGTPEELLASD-DPWVR 238
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
6-249 |
9.37e-53 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 173.29 E-value: 9.37e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKteFRRDGGSVmAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRiaggaVRFEGTDLTQLQEKD 85
Cdd:COG1122 1 IELENLS--FSYPGGTP-ALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGE-----VLVDGKDITKKNLRE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRyrgnELAMIFQEPMTSLnpvlrIGRQLEEPIM---LHMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMR 162
Cdd:COG1122 73 LRR----KVGLVFQNPDDQL-----FAPTVEEDVAfgpENLGLPREEIRERVEEALELVGL---EHLADRPPHELSGGQK 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 163 QRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQeMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVK 242
Cdd:COG1122 141 QRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEG-KTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPR 219
|
....*..
gi 1119351554 243 ELFENPQ 249
Cdd:COG1122 220 EVFSDYE 226
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
6-244 |
3.65e-51 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 169.47 E-value: 3.65e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTpgriaGGAVRFEGTDLTQLQEKD 85
Cdd:COG1131 1 IEVRGLTKRY----GDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPT-----SGEVRVLGEDVARDPAEV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRyrgneLAMIFQEPmtSLNPVLRIGRQLEEPIMLHmGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRV 165
Cdd:COG1131 72 RRR-----IGYVPQEP--ALYPDLTVRENLRFFARLY-GLPRKEARERIDELLELFGL---TDAADRKVGTLSGGMKQRL 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1119351554 166 MIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEqEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKEL 244
Cdd:COG1131 141 GLALALLHDPELLILDEPTSGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDEL 218
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
6-241 |
4.00e-51 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 168.80 E-value: 4.00e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIM-RLLKDTpgriaGGAVRFEGTDLTQlqek 84
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKS-TLLRIIaGLERPT-----SGEVLVDGEPVTG---- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 dmrryRGNELAMIFQEPmtSLNPVLRIgrqlEEPIML---HMGYSRKKAREHAIHTLRLVGIPRAEevvDDYPHQLSGGM 161
Cdd:cd03293 71 -----PGPDRGYVFQQD--ALLPWLTV----LDNVALgleLQGVPKAEARERAEELLELVGLSGFE---NAYPHQLSGGM 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 162 RQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYA--GRVVEEA 239
Cdd:cd03293 137 RQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSArpGRIVAEV 216
|
..
gi 1119351554 240 PV 241
Cdd:cd03293 217 EV 218
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-260 |
1.45e-50 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 168.57 E-value: 1.45e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVtslsimrLLKDTPGRIA--GGAVRFEG--- 75
Cdd:PRK11701 2 MDQPLLSVRGLTKLY----GPRKGCRDVSFDLYPGEVLGIVGESGSGKTT-------LLNALSARLApdAGEVHYRMrdg 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 76 --TDLTQLQEKDMRRYRGNELAMIFQEPMTSLNPVLRIGRQLEEPIML----HMGysrkKAREHAIHTLRLVGIPRAEev 149
Cdd:PRK11701 71 qlRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAvgarHYG----DIRATAGDWLERVEIDAAR-- 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 150 VDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVV 229
Cdd:PRK11701 145 IDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLV 224
|
250 260 270
....*....|....*....|....*....|.
gi 1119351554 230 MYAGRVVEEAPVKELFENPQHPYTKGLIQSV 260
Cdd:PRK11701 225 MKQGRVVESGLTDQVLDDPQHPYTQLLVSSV 255
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
6-254 |
4.12e-50 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 166.91 E-value: 4.12e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLktEFRRDGGSVMavSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRiaggaVRFEGTDLTQLQEKD 85
Cdd:cd03261 1 IELRGL--TKSFGGRTVL--KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGE-----VLIDGEDISGLSEAE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRYRgNELAMIFQEP--MTSLNPVLRIGRQLEEpimlHMGYSRKKAREHAIHTLRLVGIPRAEevvDDYPHQLSGGMRQ 163
Cdd:cd03261 72 LYRLR-RRMGMLFQSGalFDSLTVFENVAFPLRE----HTRLSEEEIREIVLEKLEAVGLRGAE---DLYPAELSGGMKK 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 164 RVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKE 243
Cdd:cd03261 144 RVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEE 223
|
250
....*....|.
gi 1119351554 244 LFeNPQHPYTK 254
Cdd:cd03261 224 LR-ASDDPLVR 233
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-241 |
1.71e-49 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 166.03 E-value: 1.71e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSK--LLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLlkdtpgrIAG------GAVR 72
Cdd:COG1116 1 MSAAapALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKS----TLLRL-------IAGlekptsGEVL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 73 FEGTDLTQLqekdmrryrGNELAMIFQEPmtSLNPVLRIgrqlEEPIML---HMGYSRKKAREHAIHTLRLVGIPRAEev 149
Cdd:COG1116 70 VDGKPVTGP---------GPDRGVVFQEP--ALLPWLTV----LDNVALgleLRGVPKAERRERARELLELVGLAGFE-- 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 150 vDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDlgvVAE---MCDR 226
Cdd:COG1116 133 -DAYPHQLSGGMRQRVAIARALANDPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHD---VDEavfLADR 208
|
250
....*....|....*..
gi 1119351554 227 VVVMYA--GRVVEEAPV 241
Cdd:COG1116 209 VVVLSArpGRIVEEIDV 225
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
5-260 |
3.86e-48 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 162.31 E-value: 3.86e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVtslsimrLLKDTPGRIA--GGAVRFEGTD----- 77
Cdd:TIGR02323 3 LLQVSGLSKSY----GGGKGCRDVSFDLYPGEVLGIVGESGSGKST-------LLGCLAGRLApdHGTATYIMRSgaele 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 78 LTQLQEKDMRRYRGNELAMIFQEPMTSLNPVLRIGRQLEEPIML----HMGysrkKAREHAIHTLRLVGIPRAEevVDDY 153
Cdd:TIGR02323 72 LYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAigarHYG----NIRATAQDWLEEVEIDPTR--IDDL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 154 PHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAG 233
Cdd:TIGR02323 146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQG 225
|
250 260
....*....|....*....|....*..
gi 1119351554 234 RVVEEAPVKELFENPQHPYTKGLIQSV 260
Cdd:TIGR02323 226 RVVESGLTDQVLDDPQHPYTQLLVSSI 252
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-240 |
1.09e-46 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 157.98 E-value: 1.09e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLkDTPgriAGGAVRFEGTDLTQ 80
Cdd:COG4181 4 SSAPIIELRGLTKTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKS-TLLGLLAGL-DRP---TSGTVRLAGQDLFA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 81 LQEKDMRRYRGNELAMIFQE----P-MTSLnpvlrigrqleEPIMLHM---GysRKKAREHAIHTLRLVGIpraEEVVDD 152
Cdd:COG4181 79 LDEDARARLRARHVGFVFQSfqllPtLTAL-----------ENVMLPLelaG--RRDARARARALLERVGL---GHRLDH 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 153 YPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGvVAEMCDRVVVMYA 232
Cdd:COG4181 143 YPAQLSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPA-LAARCDRVLRLRA 221
|
....*...
gi 1119351554 233 GRVVEEAP 240
Cdd:COG4181 222 GRLVEDTA 229
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
5-260 |
3.60e-46 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 157.13 E-value: 3.60e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLktEFRRDGGSVmaVSGVDFHINKGEVLGLVGESGCGKSvTSL-SIMRLLKdtpgrIAGGAVRFEGTDLTQLQE 83
Cdd:COG1120 1 MLEAENL--SVGYGGRPV--LDDVSLSLPPGEVTALLGPNGSGKS-TLLrALAGLLK-----PSSGEVLLDGRDLASLSR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 84 KDMRRyrgnELAMIFQE-----PMTSLNPVLRiGRQleePIMLHMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLS 158
Cdd:COG1120 71 RELAR----RIAYVPQEppapfGLTVRELVAL-GRY---PHLGLFGRPSAEDREAVEEALERTGL---EHLADRPVDELS 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 159 GGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEE 238
Cdd:COG1120 140 GGERQRVLIARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQ 219
|
250 260
....*....|....*....|..
gi 1119351554 239 APVKELFenpqhpyTKGLIQSV 260
Cdd:COG1120 220 GPPEEVL-------TPELLEEV 234
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
4-259 |
4.31e-46 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 157.26 E-value: 4.31e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 4 KLLEVQGLKTEFRRDGG-----SVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAggavrfegTDL 78
Cdd:PRK15112 3 TLLEVRNLSKTFRYRTGwfrrqTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELL--------IDD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 79 TQLQEKDMRrYRGNELAMIFQEPMTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLVGIPRaeEVVDDYPHQLS 158
Cdd:PRK15112 75 HPLHFGDYS-YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP--DHASYYPHMLA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 159 GGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEE 238
Cdd:PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVER 231
|
250 260
....*....|....*....|.
gi 1119351554 239 APVKELFENPQHPYTKGLIQS 259
Cdd:PRK15112 232 GSTADVLASPLHELTKRLIAG 252
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
15-234 |
4.44e-45 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 153.01 E-value: 4.44e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 15 FRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTDLTQLQEKDMRRyrgnEL 94
Cdd:cd03225 7 FSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEV-----LVDGKDLTKLSLKELRR----KV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 95 AMIFQEPMTSLnpvlrIGRQLEEPI---MLHMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAM 171
Cdd:cd03225 78 GLVFQNPDDQF-----FGPTVEEEVafgLENLGLPEEEIEERVEEALELVGL---EGLRDRSPFTLSGGQKQRVAIAGVL 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 172 SCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQeMGMLLITHDLGVVAEMCDRVVVMYAGR 234
Cdd:cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEG-KTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
6-244 |
2.60e-44 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 151.95 E-value: 2.60e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLkdtpgRIAGGAVRFEGTDLTQLQEKD 85
Cdd:cd03256 1 IEVENLSKTY---PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV-----EPTSGSVLIDGTDINKLKGKA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRYRGnELAMIFQ-----EPMTSLNPVL--RIGRQLEEPIMLHMGYSRKKARehAIHTLRLVGI-PRAEEVVDdyphQL 157
Cdd:cd03256 73 LRQLRR-QIGMIFQqfnliERLSVLENVLsgRLGRRSTWRSLFGLFPKEEKQR--ALAALERVGLlDKAYQRAD----QL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 158 SGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVE 237
Cdd:cd03256 146 SGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF 225
|
....*..
gi 1119351554 238 EAPVKEL 244
Cdd:cd03256 226 DGPPAEL 232
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
4-264 |
2.94e-44 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 152.80 E-value: 2.94e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 4 KLLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTpgriaGGAVRFEGTDLTQLQE 83
Cdd:cd03294 19 KLLAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT-----SGKVLIDGQDIAAMSR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 84 KDMRRYRGNELAMIFQEpmTSLNPVLRIGRQLEEPIMLHmGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQ 163
Cdd:cd03294 94 KELRELRRKKISMVFQS--FALLPHRTVLENVAFGLEVQ-GVPRAEREERAAEALELVGL---EGWEHKYPDELSGGMQQ 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 164 RVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKE 243
Cdd:cd03294 168 RVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEE 247
|
250 260
....*....|....*....|.
gi 1119351554 244 LFENPQHPYTKGLIQSVPKLR 264
Cdd:cd03294 248 ILTNPANDYVREFFRGVDRAK 268
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
5-244 |
3.49e-44 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 151.68 E-value: 3.49e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFrrdGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLkdtpgRIAGGAVRFEGTDLTQLQEK 84
Cdd:TIGR02315 1 MLEVENLSKVY---PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV-----EPSSGSILLEGTDITKLRGK 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRYRGNeLAMIFQE-----PMTSLNPVL--RIGRQLEEPIMLHMgYSRKKaREHAIHTLRLVGIpraeevvDDYPH-- 155
Cdd:TIGR02315 73 KLRKLRRR-IGMIFQHynlieRLTVLENVLhgRLGYKPTWRSLLGR-FSEED-KERALSALERVGL-------ADKAYqr 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 156 --QLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAG 233
Cdd:TIGR02315 143 adQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAG 222
|
250
....*....|.
gi 1119351554 234 RVVEEAPVKEL 244
Cdd:TIGR02315 223 EIVFDGAPSEL 233
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
4-244 |
3.69e-43 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 149.05 E-value: 3.69e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 4 KLLEVQGLKTEFrrdGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSL-SIMRLLkdtpgRIAGGAVRFEGTDLTQLQ 82
Cdd:COG3638 1 PMLELRNLSKRY---PGGTPALDDVSLEIERGEFVALIGPSGAGKS-TLLrCLNGLV-----EPTSGEILVDGQDVTALR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 83 EKDMRRYRGnELAMIFQEP-----MTSLNPVL--RIGRQleePIMLHM-GYSRKKAREHAIHTLRLVGI-PRAEEVVDdy 153
Cdd:COG3638 72 GRALRRLRR-RIGMIFQQFnlvprLSVLTNVLagRLGRT---STWRSLlGLFPPEDRERALEALERVGLaDKAYQRAD-- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 154 phQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAG 233
Cdd:COG3638 146 --QLSGGQQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDG 223
|
250
....*....|.
gi 1119351554 234 RVVEEAPVKEL 244
Cdd:COG3638 224 RVVFDGPPAEL 234
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-252 |
8.88e-43 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 151.02 E-value: 8.88e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTslsiMRLlkdtpgrIAG------GAVRFE 74
Cdd:COG3842 1 MAMPALELENVSKRY----GDVTALDDVSLSIEPGEFVALLGPSGCGKTTL----LRM-------IAGfetpdsGRILLD 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 75 GTDLTQLQ-EKdmrryRGneLAMIFQEP-----MTslnpV-------LRIgrqleepimlhMGYSRKKAREHAIHTLRLV 141
Cdd:COG3842 66 GRDVTGLPpEK-----RN--VGMVFQDYalfphLT----VaenvafgLRM-----------RGVPKAEIRARVAELLELV 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 142 GIpraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVA 221
Cdd:COG3842 124 GL---EGLADRYPHQLSGGQQQRVALARALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDQEEAL 200
|
250 260 270
....*....|....*....|....*....|.
gi 1119351554 222 EMCDRVVVMYAGRVVEEAPVKELFENPQHPY 252
Cdd:COG3842 201 ALADRIAVMNDGRIEQVGTPEEIYERPATRF 231
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
6-235 |
1.43e-42 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 146.52 E-value: 1.43e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLKdtpgRIAGGAVRFEGTDLTQlQEKD 85
Cdd:cd03262 1 IEIKNLHKSF----GDFHVLKGIDLTVKKGEVVVIIGPSGSGKS-TLLRCINLLE----EPDSGTIIIDGLKLTD-DKKN 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRYRgNELAMIFQ-----EPMTSLNPVLrigrqlEEPIMLHmGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGG 160
Cdd:cd03262 71 INELR-QKVGMVFQqfnlfPHLTVLENIT------LAPIKVK-GMSKAEAEERALELLEKVGL---ADKADAYPAQLSGG 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119351554 161 MRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQeMGMLLITHDLGVVAEMCDRVVVMYAGRV 235
Cdd:cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG-MTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
19-259 |
3.79e-42 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 146.29 E-value: 3.79e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 19 GGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTDLTQLQEKDMRRYRGnelaMIF 98
Cdd:cd03295 11 GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI-----FIDGEDIREQDPVELRRKIG----YVI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 99 QEpmTSLNPVLRIgrqlEEPIML---HMGYSRKKAREHAIHTLRLVGIPRAEeVVDDYPHQLSGGMRQRVMIAMAMSCSP 175
Cdd:cd03295 82 QQ--IGLFPHMTV----EENIALvpkLLKWPKEKIRERADELLALVGLDPAE-FADRYPHELSGGQQQRVGVARALAADP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 176 KLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENPQHPYTKG 255
Cdd:cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAE 234
|
....
gi 1119351554 256 LIQS 259
Cdd:cd03295 235 FVGA 238
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
6-249 |
2.65e-41 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 143.73 E-value: 2.65e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLS-IMRLLKDTpgriaGGAVRFEGTDLTQLQEK 84
Cdd:cd03219 1 LEVRGLTKRF----GGLVALDDVSFSVRPGEIHGLIGPNGAGKT-TLFNlISGFLRPT-----SGSVLFDGEDITGLPPH 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRyRGneLAMIFQEP-----MTSL-NpvLRIGRQLEEP---IMLHMGYSRKKAREHAIHTLRLVGI-PRAEEVVDDyp 154
Cdd:cd03219 71 EIAR-LG--IGRTFQIPrlfpeLTVLeN--VMVAAQARTGsglLLARARREEREARERAEELLERVGLaDLADRPAGE-- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 155 hqLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEeQEMGMLLITHDLGVVAEMCDRVVVMYAGR 234
Cdd:cd03219 144 --LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGR 220
|
250
....*....|....*
gi 1119351554 235 VVEEAPVKELFENPQ 249
Cdd:cd03219 221 VIAEGTPDEVRNNPR 235
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
19-240 |
4.41e-40 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 140.19 E-value: 4.41e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 19 GGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLL--KDTPGRiagGAVRFEGTDLTQLQEKDMRRYRGNeLAM 96
Cdd:COG2884 12 PGGREALSDVSLEIEKGEFVFLTGPSGAGKS----TLLKLLygEERPTS---GQVLVNGQDLSRLKRREIPYLRRR-IGV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 97 IFQEpmtslnpvLRI--GRQLEEPIMLHM---GYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAM 171
Cdd:COG2884 84 VFQD--------FRLlpDRTVYENVALPLrvtGKSRKEIRRRVREVLDLVGL---SDKAKALPHELSGGEQQRVAIARAL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119351554 172 SCSPKLLIADEPTTALDVTIQAQILDLMKRLkeeQEMGM--LLITHDLGVVAEMCDRVVVMYAGRVVEEAP 240
Cdd:COG2884 153 VNRPELLLADEPTGNLDPETSWEIMELLEEI---NRRGTtvLIATHDLELVDRMPKRVLELEDGRLVRDEA 220
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
6-244 |
4.79e-40 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 140.39 E-value: 4.79e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAGGAVRFEGTDLTQLQEKD 85
Cdd:cd03260 1 IELRDLNVYY----GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRYRgnELAMIFQEPmtslNPV-LRIGRQLEEPIMLHmGYSRKKAREHAIHT-LRLVGIPraEEVVDD-YPHQLSGGMR 162
Cdd:cd03260 77 LELRR--RVGMVFQKP----NPFpGSIYDNVAYGLRLH-GIKLKEELDERVEEaLRKAALW--DEVKDRlHALGLSGGQQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 163 QRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeeQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVK 242
Cdd:cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELK--KEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225
|
..
gi 1119351554 243 EL 244
Cdd:cd03260 226 QI 227
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
6-237 |
7.86e-40 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 139.19 E-value: 7.86e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLK--DTPgriAGGAVRFEGTDLTQLQE 83
Cdd:cd03259 1 LELKGLSKTY----GSVRALDDLSLTVEPGEFLALLGPSGCGKT----TLLRLIAglERP---DSGEILIDGRDVTGVPP 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 84 KdmRRyrgnELAMIFQEPmtSLNPVLRIgrqlEEPI---MLHMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGG 160
Cdd:cd03259 70 E--RR----NIGMVFQDY--ALFPHLTV----AENIafgLKLRGVPKAEIRARVRELLELVGL---EGLLNRYPHELSGG 134
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119351554 161 MRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVE 237
Cdd:cd03259 135 QQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
25-185 |
1.98e-39 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 136.24 E-value: 1.98e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 25 VSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTDLTQLQEKDMRRyrgnELAMIFQEPmtS 104
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTI-----LLDGQDLTDDERKSLRK----EIGYVFQDP--Q 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 105 LNPVLRIGRQLEEP-IMLHMGYSRKKAR-EHAIHTLRLVGIprAEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADE 182
Cdd:pfam00005 70 LFPRLTVRENLRLGlLLKGLSKREKDARaEEALEKLGLGDL--ADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDE 147
|
...
gi 1119351554 183 PTT 185
Cdd:pfam00005 148 PTA 150
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
5-237 |
3.81e-39 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 137.87 E-value: 3.81e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLkDTPgriAGGAVRFEGTDLTQLQEK 84
Cdd:TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKS-TLLHLLGGL-DNP---TSGEVLFNGQSLSKLSSN 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRYRGNELAMIFQ--EPMTSLN-------PVLrIGRQleepimlhmgySRKKAREHAIHTLRLVGIpraEEVVDDYPH 155
Cdd:TIGR02211 76 ERAKLRNKKLGFIYQfhHLLPDFTalenvamPLL-IGKK-----------SVKEAKERAYEMLEKVGL---EHRINHRPS 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 156 QLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMcDRVVVMYAGRV 235
Cdd:TIGR02211 141 ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQL 219
|
..
gi 1119351554 236 VE 237
Cdd:TIGR02211 220 FN 221
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
6-235 |
6.02e-39 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 135.60 E-value: 6.02e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTpgriaGGAVRFEGTDLTQLQEKD 85
Cdd:cd03230 1 IEVRNLSKRY----GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD-----SGEIKVLGKDIKKEPEEV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRyrgneLAMIFQEPMTslnpvlrigrqleepimlhmgYSRKKAREHAihtlrlvgipraeevvddyphQLSGGMRQRV 165
Cdd:cd03230 72 KRR-----IGYLPEEPSL---------------------YENLTVRENL---------------------KLSGGMKQRL 104
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 166 MIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQeMGMLLITHDLGVVAEMCDRVVVMYAGRV 235
Cdd:cd03230 105 ALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEG-KTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
7-236 |
1.72e-38 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 134.87 E-value: 1.72e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 7 EVQGLktEFRRDGGSVmaVSGVDFHINKGEVLGLVGESGCGKSvTSL-SIMRLLKdtpgrIAGGAVRFEGTDLTQLQEKD 85
Cdd:cd03214 1 EVENL--SVGYGGRTV--LDDLSLSIEAGEIVGILGPNGAGKS-TLLkTLAGLLK-----PSSGEILLDGKDLASLSPKE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRYrgneLAMIFQepmtslnpvlrigrqleepimlhmgysrkkarehaihTLRLVGIpraEEVVDDYPHQLSGGMRQRV 165
Cdd:cd03214 71 LARK----IAYVPQ-------------------------------------ALELLGL---AHLADRPFNELSGGERQRV 106
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119351554 166 MIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVV 236
Cdd:cd03214 107 LLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-252 |
3.24e-38 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 135.99 E-value: 3.24e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLktEFRRDGgsVMAVSGVDFHINKGEVLGLVGESGCGKSvtSL--SIMRLLKDTPGRIaggavRFEGTDL 78
Cdd:COG1121 2 MMMPAIELENL--TVSYGG--RPVLEDVSLTIPPGEFVAIVGPNGAGKS--TLlkAILGLLPPTSGTV-----RLFGKPP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 79 TQlqekdMRRYRG-----NELAMIFqePMTSLNpVLRIGRqleepiMLHMGYSR---KKAREHAIHTLRLVGIpraeevv 150
Cdd:COG1121 71 RR-----ARRRIGyvpqrAEVDWDF--PITVRD-VVLMGR------YGRRGLFRrpsRADREAVDEALERVGL------- 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 151 DDYPH----QLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQeMGMLLITHDLGVVAEMCDR 226
Cdd:COG1121 130 EDLADrpigELSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRREG-KTILVVTHDLGAVREYFDR 208
|
250 260
....*....|....*....|....*...
gi 1119351554 227 VVVMyAGRVVEEAPVKELF--ENPQHPY 252
Cdd:COG1121 209 VLLL-NRGLVAHGPPEEVLtpENLSRAY 235
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
6-245 |
5.76e-38 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 136.02 E-value: 5.76e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKteFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTD-LTQLQEK 84
Cdd:TIGR04520 1 IEVENVS--FSYPESEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKV-----TVDGLDtLDEENLW 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRyrgnELAMIFQEPMTSLnpvlrIGRQLEEPI---MLHMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGM 161
Cdd:TIGR04520 74 EIRK----KVGMVFQNPDNQF-----VGATVEDDVafgLENLGVPREEMRKRVDEALKLVGM---EDFRDREPHLLSGGQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 162 RQRVMIA--MAMscSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAeMCDRVVVMYAGRVVEEA 239
Cdd:TIGR04520 142 KQRVAIAgvLAM--RPDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEAV-LADRVIVMNKGKIVAEG 218
|
....*.
gi 1119351554 240 PVKELF 245
Cdd:TIGR04520 219 TPREIF 224
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
15-252 |
1.41e-37 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 142.28 E-value: 1.41e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 15 FRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKS-VTSLsIMRLLKDTPGRIaggavRFEGTDLTQLqekDMRRYRGNe 93
Cdd:COG2274 481 FRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKStLLKL-LLGLYEPTSGRI-----LIDGIDLRQI---DPASLRRQ- 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 94 LAMIFQEPM----TslnpvlrigrqLEEPIMLhmgySRKKA-REHAIHTLRLVGIpraEEVVDDYPH-----------QL 157
Cdd:COG2274 551 IGVVLQDVFlfsgT-----------IRENITL----GDPDAtDEEIIEAARLAGL---HDFIEALPMgydtvvgeggsNL 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 158 SGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeeQEMGMLLITHDLGVVAeMCDRVVVMYAGRVVE 237
Cdd:COG2274 613 SGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLL--KGRTVIIIAHRLSTIR-LADRIIVLDKGRIVE 689
|
250
....*....|....*
gi 1119351554 238 EAPVKELFENPQHPY 252
Cdd:COG2274 690 DGTHEELLARKGLYA 704
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
20-234 |
1.94e-37 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 131.93 E-value: 1.94e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLkdtpgRIAGGAVRFEGTDLTQLQekDMRRYRGNELAMIFQ 99
Cdd:cd03229 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE-----EPDSGSILIDGEDLTDLE--DELPPLRRRIGMVFQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 100 EPmtSLNPvlrigrqleepimlHMgysrkkarehaihtlrlvgipraeEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLI 179
Cdd:cd03229 84 DF--ALFP--------------HL------------------------TVLENIALGLSGGQQQRVALARALAMDPDVLL 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1119351554 180 ADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGR 234
Cdd:cd03229 124 LDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
20-260 |
3.02e-37 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 133.68 E-value: 3.02e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLKDtpgrIAGGAVRFEGTDLT--QLQEKDMRRyrgnELAMI 97
Cdd:PRK09493 12 GPTQVLHNIDLNIDQGEVVVIIGPSGSGKS-TLLRCINKLEE----ITSGDLIVDGLKVNdpKVDERLIRQ----EAGMV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 98 FQE----P-MTSLNPVLRIGRQLEepimlhmGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAMS 172
Cdd:PRK09493 83 FQQfylfPhLTALENVMFGPLRVR-------GASKEEAEKQARELLAKVGL---AERAHHYPSELSGGQQQRVAIARALA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 173 CSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQeMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENPQHPY 252
Cdd:PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG-MTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQR 231
|
....*...
gi 1119351554 253 TKGLIQSV 260
Cdd:PRK09493 232 LQEFLQHV 239
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
6-257 |
3.80e-37 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 136.04 E-value: 3.80e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSImrllkdtpgrIAG------GAVRFEGTDL- 78
Cdd:COG1118 3 IEVRNISKRF----GSFTLLDDVSLEIASGELVALLGPSGSGKT-TLLRI----------IAGletpdsGRIVLNGRDLf 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 79 TQLQEKDmRRyrgneLAMIFQEP-----MTslnpV-------LRIGRQLEEPImlhmgysRKKAREHaihtLRLVGIpra 146
Cdd:COG1118 68 TNLPPRE-RR-----VGFVFQHYalfphMT----VaeniafgLRVRPPSKAEI-------RARVEEL----LELVQL--- 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 147 EEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDR 226
Cdd:COG1118 124 EGLADRYPSQLSGGQRQRVALARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADR 203
|
250 260 270
....*....|....*....|....*....|.
gi 1119351554 227 VVVMYAGRVVEEAPVKELFENPQHPYTKGLI 257
Cdd:COG1118 204 VVVMNQGRIEQVGTPDEVYDRPATPFVARFL 234
|
|
| heterocyst_DevA |
TIGR02982 |
ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly ... |
6-236 |
1.02e-36 |
|
ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Pssm-ID: 274374 [Multi-domain] Cd Length: 220 Bit Score: 131.68 E-value: 1.02e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLKdtpgRIAGGAVRFEGTDLTQLQEKD 85
Cdd:TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKT-TLLTLIGGLR----SVQEGSLKVLGQELHGASKKQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRYRGNeLAMIFQEpmTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRV 165
Cdd:TIGR02982 77 LVQLRRR-IGYIFQA--HNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGL---GDHLNYYPHNLSGGQKQRV 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119351554 166 MIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDlGVVAEMCDRVVVMYAGRVV 236
Cdd:TIGR02982 151 AIARALVHHPKLVLADEPTAALDSKSGRDVVELMQKLAKEQGCTILMVTHD-NRILDVADRILQMEDGKLL 220
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
5-247 |
1.44e-36 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 131.90 E-value: 1.44e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIM-RLLKdtPGRiagGAVRFEGTDLTQLQE 83
Cdd:COG4555 1 MIEVENLSKKY----GKVPALKDVSFTAKDGEITGLLGPNGAGKT-TLLRMLaGLLK--PDS---GSILIDGEDVRKEPR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 84 KDMRRyrgneLAMIFQEPMtsLNPVLRIGRQLEEPIMLH--MGYSRKKAREHAIHTLRLvgipraEEVVDDYPHQLSGGM 161
Cdd:COG4555 71 EARRQ-----IGVLPDERG--LYDRLTVRENIRYFAELYglFDEELKKRIEELIELLGL------EEFLDRRVGELSTGM 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 162 RQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEqEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPV 241
Cdd:COG4555 138 KKKVALARALVHDPKVLLLDEPTNGLDVMARRLLREILRALKKE-GKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSL 216
|
....*.
gi 1119351554 242 KELFEN 247
Cdd:COG4555 217 DELREE 222
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
6-244 |
1.66e-36 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 130.95 E-value: 1.66e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGR--IAGGAVRFEGTDLtqlqe 83
Cdd:cd03265 1 IEVENLVKKY----GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRatVAGHDVVREPREV----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 84 kdmRRYRGnelaMIFQEPmtSLNPVLrIGRqleEPIMLH---MGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGG 160
Cdd:cd03265 72 ---RRRIG----IVFQDL--SVDDEL-TGW---ENLYIHarlYGVPGAERRERIDELLDFVGL---LEAADRLVKTYSGG 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 161 MRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAP 240
Cdd:cd03265 136 MRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGT 215
|
....
gi 1119351554 241 VKEL 244
Cdd:cd03265 216 PEEL 219
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-246 |
1.43e-35 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 130.14 E-value: 1.43e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKteFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLkdtpgRIAGGAVRFEGTDLTQ 80
Cdd:PRK13635 1 MKEEIIRVEHIS--FRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL-----LPEAGTITVGGMVLSE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 81 LQEKDMRRYRGnelaMIFQEPMTSLnpvlrIGRQLEEPIMLHM---GYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQL 157
Cdd:PRK13635 74 ETVWDVRRQVG----MVFQNPDNQF-----VGATVQDDVAFGLeniGVPREEMVERVDQALRQVGM---EDFLNREPHRL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 158 SGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEmCDRVVVMYAGRVVE 237
Cdd:PRK13635 142 SGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILE 220
|
....*....
gi 1119351554 238 EAPVKELFE 246
Cdd:PRK13635 221 EGTPEEIFK 229
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
20-257 |
1.53e-35 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 131.73 E-value: 1.53e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSVTslsiMRLlkdtpgrIAG------GAVRFEGTDLTQLQEKDmrryRGne 93
Cdd:COG3839 14 GGVEALKDIDLDIEDGEFLVLLGPSGCGKSTL----LRM-------IAGledptsGEILIGGRDVTDLPPKD----RN-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 94 LAMIFQEP-----MTslnpV-------LRIgrqleepimlhMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGM 161
Cdd:COG3839 77 IAMVFQSYalyphMT----VyeniafpLKL-----------RKVPKAEIDRRVREAAELLGL---EDLLDRKPKQLSGGQ 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 162 RQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLgvvAE---MCDRVVVMYAGRVVEE 238
Cdd:COG3839 139 RQRVALGRALVREPKVFLLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTHDQ---VEamtLADRIAVMNDGRIQQV 215
|
250
....*....|....*....
gi 1119351554 239 APVKELFENPQHPYTKGLI 257
Cdd:COG3839 216 GTPEELYDRPANLFVAGFI 234
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
6-247 |
4.10e-35 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 134.12 E-value: 4.10e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLktEFRRDGGSVmAVSGVDFHINKGEVLGLVGESGCGKSvTSLS-IMRLLKDTPGRIaggavRFEGTDLTQLQEK 84
Cdd:COG4988 337 IELEDV--SFSYPGGRP-ALDGLSLTIPPGERVALVGPSGAGKS-TLLNlLLGFLPPYSGSI-----LINGVDLSDLDPA 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRYrgneLAMIFQepmtslNPVLRIGRqLEEPIMLhmgySRKKAREHAIHT-LRLVGiprAEEVVDDYPH-------- 155
Cdd:COG4988 408 SWRRQ----IAWVPQ------NPYLFAGT-IRENLRL----GRPDASDEELEAaLEAAG---LDEFVAALPDgldtplge 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 156 ---QLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQemGMLLITHDLGVVAEMcDRVVVMYA 232
Cdd:COG4988 470 ggrGLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGR--TVILITHRLALLAQA-DRILVLDD 546
|
250
....*....|....*
gi 1119351554 233 GRVVEEAPVKELFEN 247
Cdd:COG4988 547 GRIVEQGTHEELLAK 561
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
6-254 |
7.28e-35 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 127.56 E-value: 7.28e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFRrdGGSVMavSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAGGAVRFEGTDLTQLQEKD 85
Cdd:PRK11264 4 IEVKNLVKKFH--GQTVL--HGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRYRgNELAMIFQE-----PMTSLNPVLrigrqlEEPIMLHmGYSRKKAREHAIHTLRLVGIPRAEevvDDYPHQLSGG 160
Cdd:PRK11264 80 IRQLR-QHVGFVFQNfnlfpHRTVLENII------EGPVIVK-GEPKEEATARARELLAKVGLAGKE---TSYPRRLSGG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 161 MRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMgMLLITHDLGVVAEMCDRVVVMYAGRVVEEAP 240
Cdd:PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRT-MVIVTHEMSFARDVADRAIFMDQGRIVEQGP 227
|
250
....*....|....
gi 1119351554 241 VKELFENPQHPYTK 254
Cdd:PRK11264 228 AKALFADPQQPRTR 241
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
20-249 |
7.67e-35 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 127.05 E-value: 7.67e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLkDTPG----RIAGGAVRFEgtdlTQLQEKDMRRYRGNeLA 95
Cdd:PRK11124 13 GAHQALFDITLDCPQGETLVLLGPSGAGKS-SLLRVLNLL-EMPRsgtlNIAGNHFDFS----KTPSDKAIRELRRN-VG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 96 MIFQEpmTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHAIHTL-RLvgipRAEEVVDDYPHQLSGGMRQRVMIAMAMSCS 174
Cdd:PRK11124 86 MVFQQ--YNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLeRL----RLKPYADRFPLHLSGGQQQRVAIARALMME 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119351554 175 PKLLIADEPTTALDVTIQAQILDLMKRLkeeQEMGM--LLITHDLGVVAEMCDRVVVMYAGRVVEEAPvKELFENPQ 249
Cdd:PRK11124 160 PQVLLFDEPTAALDPEITAQIVSIIREL---AETGItqVIVTHEVEVARKTASRVVYMENGHIVEQGD-ASCFTQPQ 232
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
13-251 |
8.43e-35 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 127.78 E-value: 8.43e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 13 TEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAGGA-----VRFEGTDLTQLQEKDMR 87
Cdd:PRK10619 9 IDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGqtinlVRDKDGQLKVADKNQLR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 88 RYRgNELAMIFQE-----PMTSLNPVLrigrqlEEPIMLhMGYSRKKAREHAIHTLRLVGIprAEEVVDDYPHQLSGGMR 162
Cdd:PRK10619 89 LLR-TRLTMVFQHfnlwsHMTVLENVM------EAPIQV-LGLSKQEARERAVKYLAKVGI--DERAQGKYPVHLSGGQQ 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 163 QRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMgMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVK 242
Cdd:PRK10619 159 QRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKT-MVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPE 237
|
....*....
gi 1119351554 243 ELFENPQHP 251
Cdd:PRK10619 238 QLFGNPQSP 246
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
15-234 |
2.23e-34 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 123.65 E-value: 2.23e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 15 FRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKS-VTSLsIMRLLKDTPGRIaggavRFEGTDLTQLQEKDMRRYrgne 93
Cdd:cd03228 8 FSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKStLLKL-LLRLYDPTSGEI-----LIDGVDLRDLDLESLRKN---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 94 LAMIFQEPmtslnpvlrigrqleepIMLHMgysrkkarehaihTLRlvgipraEEVvddyphqLSGGMRQRVMIAMAMSC 173
Cdd:cd03228 78 IAYVPQDP-----------------FLFSG-------------TIR-------ENI-------LSGGQRQRIAIARALLR 113
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119351554 174 SPKLLIADEPTTALDVTIQAQILDLMKRLKeeQEMGMLLITHDLGVVaEMCDRVVVMYAGR 234
Cdd:cd03228 114 DPPILILDEATSALDPETEALILEALRALA--KGKTVIVIAHRLSTI-RDADRIIVLDDGR 171
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
6-235 |
2.65e-34 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 124.93 E-value: 2.65e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLktEFRRDGGSVmaVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLkDTPgriAGGAVRFEGTDLTQLqekD 85
Cdd:COG4619 1 LELEGL--SFRVGGKPI--LSPVSLTLEAGECVAITGPSGSGKS-TLLRALADL-DPP---TSGEIYLDGKPLSAM---P 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRYRGnELAMIFQEPmtslnpVL---RIGRQLEEPIMLHmgySRKKAREHAIHTLRLVGIPraEEVVDDYPHQLSGGMR 162
Cdd:COG4619 69 PPEWRR-QVAYVPQEP------ALwggTVRDNLPFPFQLR---ERKFDRERALELLERLGLP--PDILDKPVERLSGGER 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 163 QRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRV 235
Cdd:COG4619 137 QRLALIRALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
6-249 |
3.05e-34 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 125.53 E-value: 3.05e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLktefRRDGGSvMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTDLTQLQeKD 85
Cdd:cd03299 1 LKVENL----SKDWKE-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKI-----LLNGKDITNLP-PE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRyrgneLAMIFQEpmTSLNPVLRIGRQLEEPiMLHMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRV 165
Cdd:cd03299 70 KRD-----ISYVPQN--YALFPHMTVYKNIAYG-LKKRKVDKKEIERKVLEIAEMLGI---DHLLNRKPETLSGGEQQRV 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 166 MIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELF 245
Cdd:cd03299 139 AIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218
|
....
gi 1119351554 246 ENPQ 249
Cdd:cd03299 219 KKPK 222
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
20-249 |
4.63e-34 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 125.13 E-value: 4.63e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLkDTPG----RIAGGAVRFEgtdlTQLQEKDMRRYRGNeLA 95
Cdd:COG4161 13 GSHQALFDINLECPSGETLVLLGPSGAGKS-SLLRVLNLL-ETPDsgqlNIAGHQFDFS----QKPSEKAIRLLRQK-VG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 96 MIFQEpmTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHAIHTL-RLvgipRAEEVVDDYPHQLSGGMRQRVMIAMAMSCS 174
Cdd:COG4161 86 MVFQQ--YNLWPHLTVMENLIEAPCKVLGLSKEQAREKAMKLLaRL----RLTDKADRFPLHLSGGQQQRVAIARALMME 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119351554 175 PKLLIADEPTTALDVTIQAQILDLMKRLkeeQEMGM--LLITHDLGVVAEMCDRVVVMYAGRVVEEAPvKELFENPQ 249
Cdd:COG4161 160 PQVLLFDEPTAALDPEITAQVVEIIREL---SQTGItqVIVTHEVEFARKVASQVVYMEKGRIIEQGD-ASHFTQPQ 232
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
5-244 |
5.90e-34 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 130.14 E-value: 5.90e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTslsIMRLLkdtpgriAG------GAVRFEGTDL 78
Cdd:COG1129 4 LLEMRGISKSF----GGVKALDGVSLELRPGEVHALLGENGAGKS-T---LMKIL-------SGvyqpdsGEILLDGEPV 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 79 TQLQEKDMRRyRGneLAMIFQEpmtsLNPV--------LRIGRQLEEPIMLHMGYSRKKAREHaihtLRLVGI---PRAE 147
Cdd:COG1129 69 RFRSPRDAQA-AG--IAIIHQE----LNLVpnlsvaenIFLGREPRRGGLIDWRAMRRRAREL----LARLGLdidPDTP 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 148 evVDDyphqLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEMCDRV 227
Cdd:COG1129 138 --VGD----LSVAQQQLVEIARALSRDARVLILDEPTASLTEREVERLFRIIRRLK-AQGVAIIYISHRLDEVFEIADRV 210
|
250
....*....|....*..
gi 1119351554 228 VVMYAGRVVEEAPVKEL 244
Cdd:COG1129 211 TVLRDGRLVGTGPVAEL 227
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
6-257 |
6.46e-34 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 124.76 E-value: 6.46e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLlkdtpgrIAG------GAVRFEGTDLT 79
Cdd:cd03296 3 IEVRNVSKRF----GDFVALDDVSLDIPSGELVALLGPSGSGKT----TLLRL-------IAGlerpdsGTILFGGEDAT 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 80 QLQEKDmrryrgNELAMIFQ-----EPMTSLNPV---LRIGRQLEEPimlhmgySRKKAREHAIHTLRLVGIpraEEVVD 151
Cdd:cd03296 68 DVPVQE------RNVGFVFQhyalfRHMTVFDNVafgLRVKPRSERP-------PEAEIRAKVHELLKLVQL---DWLAD 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 152 DYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMY 231
Cdd:cd03296 132 RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMN 211
|
250 260
....*....|....*....|....*.
gi 1119351554 232 AGRVVEEAPVKELFENPQHPYTKGLI 257
Cdd:cd03296 212 KGRIEQVGTPDEVYDHPASPFVYSFL 237
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
28-248 |
8.15e-34 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 127.52 E-value: 8.15e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 28 VDFHINKGEVLGLVGESGCGKSvtslSIMR----LLKDTPGRIA-GGAVRFEGTDLTQLQ-EKdmRRyrgneLAMIFQEP 101
Cdd:COG4148 18 VDFTLPGRGVTALFGPSGSGKT----TLLRaiagLERPDSGRIRlGGEVLQDSARGIFLPpHR--RR-----IGYVFQEA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 102 mtSLNPVLRIGRQLEepimlhMGYSRKKAREHAI---HTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLL 178
Cdd:COG4148 87 --RLFPHLSVRGNLL------YGRKRAPRAERRIsfdEVVELLGI---GHLLDRRPATLSGGERQRVAIGRALLSSPRLL 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 179 IADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENP 248
Cdd:COG4148 156 LMDEPLAALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRP 225
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-234 |
8.67e-34 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 124.08 E-value: 8.67e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSkLLEVQGLKTEFR---RDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLKDTpGRIAGGAVRF---- 73
Cdd:COG4778 1 MTT-LLEVENLSKTFTlhlQGGKRLPVLDGVSFSVAAGECVALTGPSGAGKS----TLLKCIYGN-YLPDSGSILVrhdg 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 74 EGTDLTQLQEKDMRRYRGNELAMIFQepmtSLNPVLRIGrQLE---EPiMLHMGYSRKKAREHAIHTLRLVGIPraEEVV 150
Cdd:COG4778 75 GWVDLAQASPREILALRRRTIGYVSQ----FLRVIPRVS-ALDvvaEP-LLERGVDREEARARARELLARLNLP--ERLW 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 151 DDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEMCDRVVVM 230
Cdd:COG4778 147 DLPPATFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAK-ARGTAIIGIFHDEEVREAVADRVVDV 225
|
....
gi 1119351554 231 YAGR 234
Cdd:COG4778 226 TPFS 229
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
20-228 |
2.36e-33 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 122.34 E-value: 2.36e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLkDTPGRiagGAVRFEGTDLTQLQEKDMRRYRGNELAMIFQ 99
Cdd:TIGR03608 9 GDKVILDDLNLTIEKGKMYAIIGESGSGKS-TLLNIIGLL-EKFDS---GQVYLNGQETPPLNSKKASKFRREKLGYLFQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 100 epmtslNPVLRIGRQLEEPIMLHMGYSRKKAREH---AIHTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPK 176
Cdd:TIGR03608 84 ------NFALIENETVEENLDLGLKYKKLSKKEKrekKKEALEKVGL---NLKLKQKIYELSGGEQQRVALARAILKPPP 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1119351554 177 LLIADEPTTALDVTIQAQILDLMKRLKEEqemGMLLI--THDLgVVAEMCDRVV 228
Cdd:TIGR03608 155 LILADEPTGSLDPKNRDEVLDLLLELNDE---GKTIIivTHDP-EVAKQADRVI 204
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
24-234 |
2.63e-33 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 120.43 E-value: 2.63e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 24 AVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKdtpgrIAGGAVRFEGTDLTQLQEKDMRRyrgnelamifqepmt 103
Cdd:cd00267 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-----PTSGEILIDGKDIAKLPLEELRR--------------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 104 slnpvlrigrqleepimlHMGYSrkkarehaihtlrlvgipraeevvddypHQLSGGMRQRVMIAMAMSCSPKLLIADEP 183
Cdd:cd00267 74 ------------------RIGYV----------------------------PQLSGGQRQRVALARALLLNPDLLLLDEP 107
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1119351554 184 TTALDVTIQAQILDLMKRLKEEQeMGMLLITHDLGVVAEMCDRVVVMYAGR 234
Cdd:cd00267 108 TSGLDPASRERLLELLRELAEEG-RTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| oligo_HPY |
TIGR01727 |
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model ... |
234-322 |
3.91e-33 |
|
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model represents a domain found in the C-terminal regions of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 213647 [Multi-domain] Cd Length: 87 Bit Score: 117.85 E-value: 3.91e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 234 RVVEEAPVKELFENPQHPYTKGLIQSVPKLRQKVRRLESIPGNVPDLSAMPQGCKFAPRCPYVMERCLAQEPALLPLEGQ 313
Cdd:TIGR01727 1 KIVETGPAEEIFKNPLHPYTKALLSAIPTIKKRDRKLISIPGEVPSLINLPSGCRFYPRCPYAQDECRKEPPALVEIAEG 80
|
....*....
gi 1119351554 314 AdrKSRCWL 322
Cdd:TIGR01727 81 H--RVACHL 87
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
6-236 |
5.19e-33 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 119.84 E-value: 5.19e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMR-LLKDTPGRIaggavRFEGtdltqlqek 84
Cdd:cd03216 1 LELRGITKRF----GGVKALDGVSLSVRRGEVHALLGENGAGKS-TLMKILSgLYKPDSGEI-----LVDG--------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 dmrryrgnelamifqEPMTSLNPvlrigrqleepimlhmgysrKKAREHAIhtlrlvgipraeEVVddypHQLSGGMRQR 164
Cdd:cd03216 62 ---------------KEVSFASP--------------------RDARRAGI------------AMV----YQLSVGERQM 90
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1119351554 165 VMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVV 236
Cdd:cd03216 91 VEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR-AQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
20-272 |
5.59e-33 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 124.04 E-value: 5.59e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTpgriaGGAVRFEGTDLTQLQEKDMRRyrgneLAMIFQ 99
Cdd:TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT-----SGTARVAGYDVVREPRKVRRS-----IGIVPQ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 100 EPmtslnpVLRIGRQLEEPIMLH---MGYSRKKAREHAIHTLRLVGIPRAEevvDDYPHQLSGGMRQRVMIAMAMSCSPK 176
Cdd:TIGR01188 74 YA------SVDEDLTGRENLEMMgrlYGLPKDEAEERAEELLELFELGEAA---DRPVGTYSGGMRRRLDIAASLIHQPD 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 177 LLIADEPTTALDVTIQAQILDLMKRLKEEqEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELfenpQHPYTKGL 256
Cdd:TIGR01188 145 VLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL----KRRLGKDT 219
|
250
....*....|....*.
gi 1119351554 257 IQSVPKLRQKVRRLES 272
Cdd:TIGR01188 220 LESRPRDIQSLKVEVS 235
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
20-257 |
7.46e-33 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 122.45 E-value: 7.46e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSL-SIMRLLKDTPG-RIAGgAVRFEG-------TDLTQLqekdmRRYR 90
Cdd:COG1117 22 GDKQALKDINLDIPENKVTALIGPSGCGKS-TLLrCLNRMNDLIPGaRVEG-EILLDGediydpdVDVVEL-----RRRV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 91 GnelaMIFQEPmtslNP--------V---LRIgrqleepimlHMGYSRKKAREHAIHTLRLVGIPraEEVVD---DYPHQ 156
Cdd:COG1117 95 G----MVFQKP----NPfpksiydnVaygLRL----------HGIKSKSELDEIVEESLRKAALW--DEVKDrlkKSALG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 157 LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEeqEMGMLLITHDLGVVAEMCDRVVVMYAGRVV 236
Cdd:COG1117 155 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKK--DYTIVIVTHNMQQAARVSDYTAFFYLGELV 232
|
250 260
....*....|....*....|.
gi 1119351554 237 EEAPVKELFENPQHPYTKGLI 257
Cdd:COG1117 233 EFGPTEQIFTNPKDKRTEDYI 253
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
24-279 |
1.04e-32 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 122.85 E-value: 1.04e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 24 AVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAggavrFEGTDLT--QLQEKDMRRyrgnELAMIFQEP 101
Cdd:PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKII-----IDGVDITdkKVKLSDIRK----KVGLVFQYP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 102 MTSLnpvlrigrqLEEPIM-------LHMGYSRKKAREHAIHTLRLVGIPRaEEVVDDYPHQLSGGMRQRVMIAMAMSCS 174
Cdd:PRK13637 93 EYQL---------FEETIEkdiafgpINLGLSEEEIENRVKRAMNIVGLDY-EDYKDKSPFELSGGQKRRVAIAGVVAME 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 175 PKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENPQHPYTK 254
Cdd:PRK13637 163 PKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESI 242
|
250 260
....*....|....*....|....*
gi 1119351554 255 GLiqSVPKLRQKVRRLESIPGNVPD 279
Cdd:PRK13637 243 GL--AVPQVTYLVRKLRKKGFNIPD 265
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
6-252 |
1.17e-32 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 127.19 E-value: 1.17e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLktEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLS-IMRLLKDTPGRIaggavRFEGTDLTQLQEK 84
Cdd:COG4987 334 LELEDV--SFRYPGAGRPVLDGLSLTLPPGERVAIVGPSGSGKS-TLLAlLLRFLDPQSGSI-----TLGGVDLRDLDED 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRYrgneLAMIFQEP---MTSL--NpvLRIGR-QLEEpimlhmgysrkkarEHAIHTLRLVGIpraEEVVDDYPH--- 155
Cdd:COG4987 406 DLRRR----IAVVPQRPhlfDTTLreN--LRLARpDATD--------------EELWAALERVGL---GDWLAALPDgld 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 156 --------QLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQemGMLLITHDLgVVAEMCDRV 227
Cdd:COG4987 463 twlgeggrRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGR--TVLLITHRL-AGLERMDRI 539
|
250 260
....*....|....*....|....*
gi 1119351554 228 VVMYAGRVVEEAPVKELFENPQHPY 252
Cdd:COG4987 540 LVLEDGRIVEQGTHEELLAQNGRYR 564
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
20-237 |
1.28e-32 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 120.44 E-value: 1.28e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTDLTQLQEKDmrryRGneLAMIFQ 99
Cdd:cd03301 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI-----YIGGRDVTDLPPKD----RD--IAMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 100 EpmTSLNPVLRIGRQLEEPIMLHmGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLI 179
Cdd:cd03301 80 N--YALYPHMTVYDNIAFGLKLR-KVPKDEIDERVREVAELLQI---EHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 180 ADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVE 237
Cdd:cd03301 154 MDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
18-246 |
4.89e-32 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 125.30 E-value: 4.89e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 18 DGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAggaVRF--EGTDLTQLqeKDMRRYRGNE-L 94
Cdd:TIGR03269 293 DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVN---VRVgdEWVDMTKP--GPDGRGRAKRyI 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 95 AMIFQEpmTSLNPVLRIGRQLEEPIMLHMgySRKKAREHAIHTLRLVGI--PRAEEVVDDYPHQLSGGMRQRVMIAMAMS 172
Cdd:TIGR03269 368 GILHQE--YDLYPHRTVLDNLTEAIGLEL--PDELARMKAVITLKMVGFdeEKAEEILDKYPDELSEGERHRVALAQVLI 443
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119351554 173 CSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFE 246
Cdd:TIGR03269 444 KEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
19-234 |
6.31e-32 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 118.50 E-value: 6.31e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 19 GGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLL--KDTPGRiagGAVRFEGTDLTQLQEKDM---RRYRGne 93
Cdd:TIGR02673 12 PGGVAALHDVSLHIRKGEFLFLTGPSGAGKT----TLLKLLygALTPSR---GQVRIAGEDVNRLRGRQLpllRRRIG-- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 94 laMIFQEPMTSLNpvlrigRQLEEPIMLHMGYSRKKAREHAI---HTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMA 170
Cdd:TIGR02673 83 --VVFQDFRLLPD------RTVYENVALPLEVRGKKEREIQRrvgAALRQVGL---EHKADAFPEQLSGGEQQRVAIARA 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119351554 171 MSCSPKLLIADEPTTALDVTIQAQILDLMKRLkEEQEMGMLLITHDLGVVAEMCDRVVVMYAGR 234
Cdd:TIGR02673 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRL-NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
|
| 3a0106s01 |
TIGR00968 |
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions] |
20-263 |
7.55e-32 |
|
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions]
Pssm-ID: 130041 [Multi-domain] Cd Length: 237 Bit Score: 119.13 E-value: 7.55e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTDLTQLQEKDmrryrgNELAMIFQ 99
Cdd:TIGR00968 11 GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI-----RLNGQDATRVHARD------RKIGFVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 100 E----PMTSLNPVLRIGRQLEEPimlhmgySRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAMSCSP 175
Cdd:TIGR00968 80 HyalfKHLTVRDNIAFGLEIRKH-------PKAKIKARVEELLELVQL---EGLGDRYPNQLSGGQRQRVALARALAVEP 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 176 KLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENPQHPYTKG 255
Cdd:TIGR00968 150 QVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMS 229
|
....*...
gi 1119351554 256 LIQSVPKL 263
Cdd:TIGR00968 230 FLGEVNVL 237
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
6-249 |
1.49e-31 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 118.11 E-value: 1.49e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSImrllkdtpgrIAG------GAVRFEGTDLT 79
Cdd:cd03300 1 IELENVSKFY----GGFVALDGVSLDIKEGEFFTLLGPSGCGKT-TLLRL----------IAGfetptsGEILLDGKDIT 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 80 QLQEKdmRRyrgnELAMIFQEpmTSLNPVLRIGRQLEEPIMLHmGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSG 159
Cdd:cd03300 66 NLPPH--KR----PVNTVFQN--YALFPHLTVFENIAFGLRLK-KLPKAEIKERVAEALDLVQL---EGYANRKPSQLSG 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 160 GMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEA 239
Cdd:cd03300 134 GQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIG 213
|
250
....*....|
gi 1119351554 240 PVKELFENPQ 249
Cdd:cd03300 214 TPEEIYEEPA 223
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
24-236 |
2.23e-31 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 117.25 E-value: 2.23e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 24 AVSGVDFHINKGEVLGLVGESGCGKSvTSL-SIMRLLKDTPGRIaggavRFEGTDLTQL--------QEKDMRRYRgnel 94
Cdd:cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKS-TLLkAILGLLKPTSGSI-----RVFGKPLEKErkrigyvpQRRSIDRDF---- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 95 amifqePMTSLNpVLRIGRqleepiMLHMGYSR---KKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAM 171
Cdd:cd03235 84 ------PISVRD-VVLMGL------YGHKGLFRrlsKADKAKVDEALERVGL---SELADRQIGELSGGQQQRVLLARAL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119351554 172 SCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEqEMGMLLITHDLGVVAEMCDRVVVMyAGRVV 236
Cdd:cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLL-NRTVV 210
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
4-273 |
2.67e-31 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 121.36 E-value: 2.67e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 4 KLLEvQGL-KTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtSL--SIMRLLKDTpgriaGGAVRFEGTDLTQ 80
Cdd:COG4175 22 KLLD-QGKsKDEILEKTGQTVGVNDASFDVEEGEIFVIMGLSGSGKS--TLvrCLNRLIEPT-----AGEVLIDGEDITK 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 81 LQEKDMRRYRGNELAMIFQE----P-MTSLNPV---LRIgrqleepimlhMGYSRKKAREHAIHTLRLVGIpraEEVVDD 152
Cdd:COG4175 94 LSKKELRELRRKKMSMVFQHfallPhRTVLENVafgLEI-----------QGVPKAERRERAREALELVGL---AGWEDS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 153 YPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTI----QAQILDLMKRLKEEqemgMLLITHDL------Gvvae 222
Cdd:COG4175 160 YPDELSGGMQQRVGLARALATDPDILLMDEAFSALDPLIrremQDELLELQAKLKKT----IVFITHDLdealrlG---- 231
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1119351554 223 mcDRVVVMYAGRVVEEAPVKELFENPQHPYTKGLIQSVPKLRqkVRRLESI 273
Cdd:COG4175 232 --DRIAIMKDGRIVQIGTPEEILTNPANDYVADFVEDVDRSK--VLTAGSV 278
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-254 |
3.99e-31 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 117.71 E-value: 3.99e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAGGAVRFEGTDLTQLQEKD 85
Cdd:PRK14247 4 IEIRDLKVSF----GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRyrgnELAMIFQEPmtslNPV--LRIGRQLEEPIMLH-MGYSRKKAREHAIHTLRLVGIprAEEVVD--DYPH-QLSG 159
Cdd:PRK14247 80 LRR----RVQMVFQIP----NPIpnLSIFENVALGLKLNrLVKSKKELQERVRWALEKAQL--WDEVKDrlDAPAgKLSG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 160 GMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeeQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEA 239
Cdd:PRK14247 150 GQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK--KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
|
250
....*....|....*
gi 1119351554 240 PVKELFENPQHPYTK 254
Cdd:PRK14247 228 PTREVFTNPRHELTE 242
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
2-239 |
4.21e-31 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 116.80 E-value: 4.21e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 2 TSKLLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLKDTpgriAGGAVRFEGTDLTQL 81
Cdd:PRK10584 3 AENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKS-TLLAILAGLDDG----SSGEVSLVGQPLHQM 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 82 QEKDMRRYRGNELAMIFQEPMtsLNPVLRIGRQLEEPIMLHmGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGM 161
Cdd:PRK10584 78 DEEARAKLRAKHVGFVFQSFM--LIPTLNALENVELPALLR-GESSRQSRNGAKALLEQLGL---GKRLDHLPAQLSGGE 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 162 RQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEmCDRVVVMYAGRVVEEA 239
Cdd:PRK10584 152 QQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQEEA 228
|
|
| PhnT2 |
TIGR03265 |
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ... |
6-252 |
5.11e-31 |
|
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 119.76 E-value: 5.11e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLkDTPGRiagGAVRFEGTDLTQLQEKd 85
Cdd:TIGR03265 5 LSIDNIRKRF----GAFTALKDISLSVKKGEFVCLLGPSGCGKT-TLLRIIAGL-ERQTA---GTIYQGGRDITRLPPQ- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRYrgnelAMIFQEpmTSLNPVLRIgrqlEEPI---MLHMGYSRKKAREHAIHTLRLVGIPRAEevvDDYPHQLSGGMR 162
Cdd:TIGR03265 75 KRDY-----GIVFQS--YALFPNLTV----ADNIaygLKNRGMGRAEVAERVAELLDLVGLPGSE---RKYPGQLSGGQQ 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 163 QRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVK 242
Cdd:TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQ 220
|
250
....*....|
gi 1119351554 243 ELFENPQHPY 252
Cdd:TIGR03265 221 EIYRHPATPF 230
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
6-244 |
8.81e-31 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 115.99 E-value: 8.81e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLkdtpgRIAGGAVRFEGTDLTQLQEKD 85
Cdd:cd03224 1 LEVENLNAGY----GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL-----PPRSGSIRFDGRDITGLPPHE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRyRGneLAMIFQepmtslnpvlriGRQL------EEPimLHMG-YSRKKAREHAI--HTLRLVgiPRAEEVVDDYPHQ 156
Cdd:cd03224 72 RAR-AG--IGYVPE------------GRRIfpeltvEEN--LLLGaYARRRAKRKARleRVYELF--PRLKERRKQLAGT 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 157 LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEqEMGMLLITHDLGVVAEMCDRVVVMYAGRVV 236
Cdd:cd03224 133 LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVV 211
|
....*...
gi 1119351554 237 EEAPVKEL 244
Cdd:cd03224 212 LEGTAAEL 219
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
29-236 |
1.62e-30 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 115.08 E-value: 1.62e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 29 DFHIN-----KGEVLGLVGESGCGKSvTSLSIMRLLKdtpgRIAGGAVRFEGTDLTQLQEKDMRRYRGNELAMIFQEpmT 103
Cdd:cd03297 12 DFTLKidfdlNEEVTGIFGASGAGKS-TLLRCIAGLE----KPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ--Y 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 104 SLNPVLRIGRQLEepimlhMGYSRKKAREHAIHTLRLVGIPRAEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEP 183
Cdd:cd03297 85 ALFPHLNVRENLA------FGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEP 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 184 TTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVV 236
Cdd:cd03297 159 FSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211
|
|
| oligo_HPY |
pfam08352 |
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found ... |
236-300 |
8.68e-30 |
|
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found towards the C-terminus of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid.
Pssm-ID: 400588 [Multi-domain] Cd Length: 65 Bit Score: 108.26 E-value: 8.68e-30
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119351554 236 VEEAPVKELFENPQHPYTKGLIQSVPKLRQKVRRLESIPGNVPDLSAMPQGCKFAPRCPYVMERC 300
Cdd:pfam08352 1 VEEGPTDDILENPLHPYTRALLNSVPRLDPPKRPLYTIPGNVPSLLELPEGCPFAPRCPFATEEC 65
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
2-245 |
1.25e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 114.44 E-value: 1.25e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 2 TSKLLEVQGLKTEFRRDGGSvMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAggavrFEGTDLTQL 81
Cdd:PRK13650 1 MSNIIEVKNLTFKYKEDQEK-YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII-----IDGDLLTEE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 82 QEKDMRRYRGnelaMIFQEPMTSLnpvlrIGRQLEEPIMLHM---GYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLS 158
Cdd:PRK13650 75 NVWDIRHKIG----MVFQNPDNQF-----VGATVEDDVAFGLenkGIPHEEMKERVNEALELVGM---QDFKEREPARLS 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 159 GGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAeMCDRVVVMYAGRVVEE 238
Cdd:PRK13650 143 GGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVEST 221
|
....*..
gi 1119351554 239 APVKELF 245
Cdd:PRK13650 222 STPRELF 228
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
20-254 |
1.96e-29 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 113.40 E-value: 1.96e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAGGAVRFEGTDLTQlQEKDMRRYRgNELAMIFQ 99
Cdd:PRK14267 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS-PDVDPIEVR-REVGMVFQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 100 EPmtslNPV--------LRIGRQLEEpimlhMGYSRKKAREHAIHTLRLVGIprAEEVVD---DYPHQLSGGMRQRVMIA 168
Cdd:PRK14267 93 YP----NPFphltiydnVAIGVKLNG-----LVKSKKELDERVEWALKKAAL--WDEVKDrlnDYPSNLSGGQRQRLVIA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 169 MAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEeqEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENP 248
Cdd:PRK14267 162 RALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENP 239
|
....*.
gi 1119351554 249 QHPYTK 254
Cdd:PRK14267 240 EHELTE 245
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
20-249 |
2.69e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 113.77 E-value: 2.69e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVD---FHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAggavrFEGTDLT-QLQEKDMRRYRgNELA 95
Cdd:PRK13641 15 GTPMEKKGLDnisFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTIT-----IAGYHITpETGNKNLKKLR-KKVS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 96 MIFQEPMTSL--NPVLrigrqleEPIM---LHMGYSRKKAREHAIHTLRLVGIPraEEVVDDYPHQLSGGMRQRVMIAMA 170
Cdd:PRK13641 89 LVFQFPEAQLfeNTVL-------KDVEfgpKNFGFSEDEAKEKALKWLKKVGLS--EDLISKSPFELSGGQMRRVAIAGV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 171 MSCSPKLLIADEPTTALDVTIQaqiLDLMKRLKEEQEMG--MLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENP 248
Cdd:PRK13641 160 MAYEPEILCLDEPAAGLDPEGR---KEMMQLFKDYQKAGhtVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDK 236
|
.
gi 1119351554 249 Q 249
Cdd:PRK13641 237 E 237
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
28-252 |
3.74e-29 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 114.82 E-value: 3.74e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 28 VDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIA-GGAVRFEGTDLTQLQ-EKdmRRyrgneLAMIFQEpmTSL 105
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVlNGRTLFDSRKGIFLPpEK--RR-----IGYVFQE--ARL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 106 NPVLRIGRQLEepimlhMGYSRKKAREHAIHTLRLVGIPRAEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTT 185
Cdd:TIGR02142 87 FPHLSVRGNLR------YGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119351554 186 ALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENPQHPY 252
Cdd:TIGR02142 161 ALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
6-244 |
4.97e-29 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 113.28 E-value: 4.97e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTpgriaGGAVRFEGTDLTQlqeKD 85
Cdd:COG4152 2 LELKGLTKRF----GDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPD-----SGEVLWDGEPLDP---ED 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRR--Y----RGnelamifqepmtsLNPVLRIGRQLEEPIMLHmGYSRKKAREHAIHTLRLVGIP-RAEEVVDDyphqLS 158
Cdd:COG4152 70 RRRigYlpeeRG-------------LYPKMKVGEQLVYLARLK-GLSKAEAKRRADEWLERLGLGdRANKKVEE----LS 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 159 GGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEqemGMLLI--THDLGVVAEMCDRVVVMYAGRVV 236
Cdd:COG4152 132 KGNQQKVQLIAALLHDPELLILDEPFSGLDPVNVELLKDVIRELAAK---GTTVIfsSHQMELVEELCDRIVIINKGRKV 208
|
....*...
gi 1119351554 237 EEAPVKEL 244
Cdd:COG4152 209 LSGSVDEI 216
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
19-244 |
5.86e-29 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 116.80 E-value: 5.86e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 19 GGSVMAVSGVDFHINKGEVLGLVGESGCGKS-VTSLsIMRLLkdtpgRIAGGAVRFEGTDLTQLQEKDMRRyrgnELAMI 97
Cdd:COG1132 350 PGDRPVLKDISLTIPPGETVALVGPSGSGKStLVNL-LLRFY-----DPTSGRILIDGVDIRDLTLESLRR----QIGVV 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 98 FQEPmtslnpvlrigrqleepIMLHM------GYSRKKA-REHAIHTLRLVGiprAEEVVDDYPHQ-----------LSG 159
Cdd:COG1132 420 PQDT-----------------FLFSGtireniRYGRPDAtDEEVEEAAKAAQ---AHEFIEALPDGydtvvgergvnLSG 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 160 GMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeeQEMGMLLITHDLGVVAeMCDRVVVMYAGRVVEEA 239
Cdd:COG1132 480 GQRQRIAIARALLKDPPILILDEATSALDTETEALIQEALERLM--KGRTTIVIAHRLSTIR-NADRILVLDDGRIVEQG 556
|
....*
gi 1119351554 240 PVKEL 244
Cdd:COG1132 557 THEEL 561
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
5-249 |
8.41e-29 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 110.84 E-value: 8.41e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLkdtpgRIAGGAVRFEGTDLTQLQEK 84
Cdd:COG0410 3 MLEVENLHAGY----GGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLL-----PPRSGSIRFDGEDITGLPPH 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRyRGneLAM------IFQEpMTslnpV---LRIGrqleepimlhmGYSRKKAREHAihtlrlvgiPRAEEVVDDYP- 154
Cdd:COG0410 74 RIAR-LG--IGYvpegrrIFPS-LT----VeenLLLG-----------AYARRDRAEVR---------ADLERVYELFPr 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 155 -----HQ----LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQeMGMLLITHDLGVVAEMCD 225
Cdd:COG0410 126 lkerrRQragtLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNREG-VTILLVEQNARFALEIAD 204
|
250 260
....*....|....*....|....
gi 1119351554 226 RVVVMYAGRVVEEAPVKELFENPQ 249
Cdd:COG0410 205 RAYVLERGRIVLEGTAAELLADPE 228
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
6-239 |
1.25e-28 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 109.61 E-value: 1.25e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavrfegtdlTQLQEKD 85
Cdd:cd03268 1 LKTNDLTKTY----GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI------------TFDGKSY 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRYrgnelamifqepmtslNPVLRIGRQLEEPIMlhmgYSRKKAREHAIHTLRLVGIP--RAEEVVD-----DYPH--- 155
Cdd:cd03268 65 QKNI----------------EALRRIGALIEAPGF----YPNLTARENLRLLARLLGIRkkRIDEVLDvvglkDSAKkkv 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 156 -QLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEMCDRVVVMYAGR 234
Cdd:cd03268 125 kGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR-DQGITVLISSHLLSEIQKVADRIGIINKGK 203
|
....*
gi 1119351554 235 VVEEA 239
Cdd:cd03268 204 LIEEG 208
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
6-244 |
1.60e-28 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 109.90 E-value: 1.60e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFRrdGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMR-LLKDTPGRIAggavrFEGTDLTqlqeK 84
Cdd:cd03263 1 LQIRNLTKTYK--KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKT-TTLKMLTgELRPTSGTAY-----INGYSIR----T 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRYRGNeLAMIFQEPM--TSLNPvlrigrqlEEPIMLHM---GYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSG 159
Cdd:cd03263 69 DRKAARQS-LGYCPQFDAlfDELTV--------REHLRFYArlkGLPKSEIKEEVELLLRVLGL---TDKANKRARTLSG 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 160 GMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQemGMLLITHDLGVVAEMCDRVVVMYAGRVVEEA 239
Cdd:cd03263 137 GMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGR--SIILTTHSMDEAEALCDRIAIMSDGKLRCIG 214
|
....*
gi 1119351554 240 PVKEL 244
Cdd:cd03263 215 SPQEL 219
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
20-260 |
1.65e-28 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 113.97 E-value: 1.65e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRiaggaVRFEGTDLTQLQEKDMRRYRGNELAMIFQ 99
Cdd:PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQ-----VLIDGVDIAKISDAELREVRRKKIAMVFQ 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 100 E----PMTSLNPVLRIGRQLEepimlhmGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAMSCSP 175
Cdd:PRK10070 114 SfalmPHMTVLDNTAFGMELA-------GINAEERREKALDALRQVGL---ENYAHSYPDELSGGMRQRVGLARALAINP 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 176 KLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENPQHPYTKG 255
Cdd:PRK10070 184 DILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRT 263
|
....*
gi 1119351554 256 LIQSV 260
Cdd:PRK10070 264 FFRGV 268
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
19-235 |
1.91e-28 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 109.42 E-value: 1.91e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 19 GGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLL--KDTPGRiagGAVRFEGTDLTQLQEKDMRRYRgNELAM 96
Cdd:cd03292 11 PNGTAALDGINISISAGEFVFLVGPSGAGKS----TLLKLIykEELPTS---GTIRVNGQDVSDLRGRAIPYLR-RKIGV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 97 IFQEPMTSLNpvlrigRQLEEPIMLHM---GYSRKKAREHAIHTLRLVGIPRAEevvDDYPHQLSGGMRQRVMIAMAMSC 173
Cdd:cd03292 83 VFQDFRLLPD------RNVYENVAFALevtGVPPREIRKRVPAALELVGLSHKH---RALPAELSGGEQQRVAIARAIVN 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119351554 174 SPKLLIADEPTTALDVTIQAQILDLMKRLkeeQEMG--MLLITHDLGVVAEMCDRVVVMYAGRV 235
Cdd:cd03292 154 SPTILIADEPTGNLDPDTTWEIMNLLKKI---NKAGttVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-257 |
2.11e-28 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 110.25 E-value: 2.11e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAGGAVRFEG----- 75
Cdd:PRK14239 1 MTEPILQVSDLSVYY----NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGhniys 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 76 --TDLTQLQEkdmrryrgnELAMIFQEP----MTSLNPV---LRIGrqleepimlhmGYSRKKAREHAIHTlRLVGIPRA 146
Cdd:PRK14239 77 prTDTVDLRK---------EIGMVFQQPnpfpMSIYENVvygLRLK-----------GIKDKQVLDEAVEK-SLKGASIW 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 147 EEVVD---DYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeeQEMGMLLITHDLGVVAEM 223
Cdd:PRK14239 136 DEVKDrlhDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK--DDYTMLLVTRSMQQASRI 213
|
250 260 270
....*....|....*....|....*....|....
gi 1119351554 224 CDRVVVMYAGRVVEEAPVKELFENPQHPYTKGLI 257
Cdd:PRK14239 214 SDRTGFFLDGDLIEYNDTKQMFMNPKHKETEDYI 247
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
5-243 |
2.56e-28 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 110.25 E-value: 2.56e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLktEFRRDGGSVmaVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLKD--TPGRiagGAVRFEGTDLTQLQ 82
Cdd:PRK13548 2 MLEARNL--SVRLGGRTL--LDDVSLTLRPGEVVAILGPNGAGKS----TLLRALSGelSPDS---GEVRLNGRPLADWS 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 83 EKDMRRYRgnelAMIFQEpmTSLN-P-----VLRIGRqleepimLHMGYSRKKAREHAIHTLRLVGIPRAEEvvDDYPhQ 156
Cdd:PRK13548 71 PAELARRR----AVLPQH--SSLSfPftveeVVAMGR-------APHGLSRAEDDALVAAALAQVDLAHLAG--RDYP-Q 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 157 LSGGMRQRVMIAMAM------SCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVM 230
Cdd:PRK13548 135 LSGGEQQRVQLARVLaqlwepDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLL 214
|
250
....*....|...
gi 1119351554 231 YAGRVVEEAPVKE 243
Cdd:PRK13548 215 HQGRLVADGTPAE 227
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-243 |
2.65e-28 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 114.35 E-value: 2.65e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSI-MRLLKDTPGRIA--GGAVRFEGTd 77
Cdd:COG3845 1 MMPPALELRGITKRF----GGVVANDDVSLTVRPGEIHALLGENGAGKS-TLMKIlYGLYQPDSGEILidGKPVRIRSP- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 78 ltqlqeKDMRRYRgneLAMIFQEPMtsLNPVLRIgrqlEEPIMLHMG------YSRKKAREhaihtlrlvgipRAEEVVD 151
Cdd:COG3845 75 ------RDAIALG---IGMVHQHFM--LVPNLTV----AENIVLGLEptkggrLDRKAARA------------RIRELSE 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 152 DYP---------HQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALdvTIQ--AQILDLMKRLKEEQeMGMLLITHDLGVV 220
Cdd:COG3845 128 RYGldvdpdakvEDLSVGEQQRVEILKALYRGARILILDEPTAVL--TPQeaDELFEILRRLAAEG-KSIIFITHKLREV 204
|
250 260
....*....|....*....|...
gi 1119351554 221 AEMCDRVVVMYAGRVVEEAPVKE 243
Cdd:COG3845 205 MAIADRVTVLRRGKVVGTVDTAE 227
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
12-271 |
5.22e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 110.11 E-value: 5.22e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 12 KTEFRRDggsvmAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAGGavrfEGTDLTQLQEKDMRRYRg 91
Cdd:PRK13634 15 KTPFERR-----ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIG----ERVITAGKKNKKLKPLR- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 92 NELAMIFQEPMTSLnpvlrigrqLEEPIM-------LHMGYSRKKAREHAIHTLRLVGIPraEEVVDDYPHQLSGGMRQR 164
Cdd:PRK13634 85 KKVGIVFQFPEHQL---------FEETVEkdicfgpMNFGVSEEDAKQKAREMIELVGLP--EELLARSPFELSGGQMRR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 165 VMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKEL 244
Cdd:PRK13634 154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
250 260
....*....|....*....|....*..
gi 1119351554 245 FENPQHPYTKGLiqSVPKLRQKVRRLE 271
Cdd:PRK13634 234 FADPDELEAIGL--DLPETVKFKRALE 258
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
3-256 |
1.09e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 109.03 E-value: 1.09e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 3 SKLLEVQGLKTEFRRDGgSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGriaggAVRFEGTDLTQLQ 82
Cdd:PRK13642 2 NKILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEG-----KVKIDGELLTAEN 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 83 EKDMRRyrgnELAMIFQEPMTSLnpvlrIGRQLEEPIMLHM---GYSRK---KAREHAIHTLRLVGIPRAEevvddyPHQ 156
Cdd:PRK13642 76 VWNLRR----KIGMVFQNPDNQF-----VGATVEDDVAFGMenqGIPREemiKRVDEALLAVNMLDFKTRE------PAR 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 157 LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEmCDRVVVMYAGRVV 236
Cdd:PRK13642 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEII 219
|
250 260
....*....|....*....|
gi 1119351554 237 EEAPVKELFENPQHPYTKGL 256
Cdd:PRK13642 220 KEAAPSELFATSEDMVEIGL 239
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
5-249 |
1.18e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 109.01 E-value: 1.18e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKteFRRDGGSVmAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGR--IAGGAVRFEGTDLTQLQ 82
Cdd:PRK13639 1 ILETRDLK--YSYPDGTE-ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEvlIKGEPIKYDKKSLLEVR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 83 EKdmrryrgneLAMIFQEPMTSLnpvlrIGRQLEEPIM---LHMGYSRKKAREHAIHTLRLVGIPRAEEVVddyPHQLSG 159
Cdd:PRK13639 78 KT---------VGIVFQNPDDQL-----FAPTVEEDVAfgpLNLGLSKEEVEKRVKEALKAVGMEGFENKP---PHHLSG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 160 GMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEqemGMLLI--THDLGVVAEMCDRVVVMYAGRVVE 237
Cdd:PRK13639 141 GQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE---GITIIisTHDVDLVPVYADKVYVMSDGKIIK 217
|
250
....*....|..
gi 1119351554 238 EAPVKELFENPQ 249
Cdd:PRK13639 218 EGTPKEVFSDIE 229
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
5-243 |
1.27e-27 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 108.28 E-value: 1.27e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLktEFRRDGGSVmaVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLK-DTPGriAGGAVRFEGTDLTQLQE 83
Cdd:COG4559 1 MLEAENL--SVRLGGRTL--LDDVSLTLRPGELTAIIGPNGAGKS----TLLKLLTgELTP--SSGEVRLNGRPLAAWSP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 84 KDMRRYRgnelAMIFQEpmTSLN-P-----VLRIGRqleepimlhMGYSRKKAREHAI--HTLRLVGIPRAEEvvDDYPh 155
Cdd:COG4559 71 WELARRR----AVLPQH--SSLAfPftveeVVALGR---------APHGSSAAQDRQIvrEALALVGLAHLAG--RSYQ- 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 156 QLSGGMRQRVMIAMAM-------SCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQeMGMLLITHDLGVVAEMCDRVV 228
Cdd:COG4559 133 TLSGGEQQRVQLARVLaqlwepvDGGPRWLFLDEPTSALDLAHQHAVLRLARQLARRG-GGVVAVLHDLNLAAQYADRIL 211
|
250
....*....|....*
gi 1119351554 229 VMYAGRVVEEAPVKE 243
Cdd:COG4559 212 LLHQGRLVAQGTPEE 226
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
27-248 |
1.64e-27 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 107.55 E-value: 1.64e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 27 GVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLkDTPgriAGGAVRFEGTDLTQlqekdmrryRGNELAMIFQEpmTSLN 106
Cdd:TIGR01184 3 GVNLTIQQGEFISLIGHSGCGKS-TLLNLISGL-AQP---TSGGVILEGKQITE---------PGPDRMVVFQN--YSLL 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 107 PVLRIGRQLEEPIMLHMGYSRKKAREHAI-HTLRLVGIPRAEevvDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTT 185
Cdd:TIGR01184 67 PWLTVRENIALAVDRVLPDLSKSERRAIVeEHIALVGLTEAA---DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFG 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 186 ALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGrvvEEAPVKELFENP 248
Cdd:TIGR01184 144 ALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG---PAANIGQILEVP 203
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
3-249 |
3.05e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 107.77 E-value: 3.05e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 3 SKLLEVQGLKteFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTDLTQLQ 82
Cdd:PRK13632 5 SVMIKVENVS--FSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI-----KIDGITISKEN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 83 EKDMRryrgNELAMIFQEPMTSLnpvlrIGRQLEEPIMLHM---GYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSG 159
Cdd:PRK13632 78 LKEIR----KKIGIIFQNPDNQF-----IGATVEDDIAFGLenkKVPPKKMKDIIDDLAKKVGM---EDYLDKEPQNLSG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 160 GMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAeMCDRVVVMYAGRVVEEA 239
Cdd:PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQG 224
|
250
....*....|
gi 1119351554 240 PVKELFENPQ 249
Cdd:PRK13632 225 KPKEILNNKE 234
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
5-238 |
5.03e-27 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 105.91 E-value: 5.03e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLkdtpgRIAGGAVRFEGTDLTQlQEK 84
Cdd:cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL-----EPDAGFATVDGFDVVK-EPA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRYRGnelamifqepmtslnpVLRIGRQLeepimlhmgYSRKKAREHAIHTLRLVGIPRAE---------------EV 149
Cdd:cd03266 75 EARRRLG----------------FVSDSTGL---------YDRLTARENLEYFAGLYGLKGDEltarleeladrlgmeEL 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 150 VDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMgMLLITHDLGVVAEMCDRVVV 229
Cdd:cd03266 130 LDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKC-ILFSTHIMQEVERLCDRVVV 208
|
....*....
gi 1119351554 230 MYAGRVVEE 238
Cdd:cd03266 209 LHRGRVVYE 217
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
24-245 |
6.15e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 107.17 E-value: 6.15e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 24 AVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavrfEGTDLT---QLQEKDMRRYRgNELAMIFQE 100
Cdd:PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV-------TVDDITithKTKDKYIRPVR-KRIGMVFQF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 101 PMTSLnpvlrIGRQLEEPIML---HMGYSRKKAREHAIHTLRLVGIPRaeEVVDDYPHQLSGGMRQRVMIAMAMSCSPKL 177
Cdd:PRK13646 94 PESQL-----FEDTVEREIIFgpkNFKMNLDEVKNYAHRLLMDLGFSR--DVMSQSPFQMSGGQMRKIAIVSILAMNPDI 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 178 LIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELF 245
Cdd:PRK13646 167 IVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
6-237 |
6.69e-27 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 106.48 E-value: 6.69e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMR-LLKDTPGRIAGGAVRFEGTdltqlqek 84
Cdd:COG4525 4 LTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKT-TLLNLIAgFLAPSSGEITLDGVPVTGP-------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 dmrryrGNELAMIFQEpmTSLNPVLRIGRQLEEPIMLHmGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQR 164
Cdd:COG4525 75 ------GADRGVVFQK--DALLPWLNVLDNVAFGLRLR-GVPKAERRARAEELLALVGL---ADFARRRIWQLSGGMRQR 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 165 VMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDlgvVAE---MCDRVVVM--YAGRVVE 237
Cdd:COG4525 143 VGIARALAADPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHS---VEEalfLATRLVVMspGPGRIVE 217
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1-270 |
2.37e-26 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 109.43 E-value: 2.37e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSkLLEVQGLKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLkDTPgriAGGAVRFEGTDLTQ 80
Cdd:PRK10535 1 MTA-LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKS-TLMNILGCL-DKP---TSGTYRVAGQDVAT 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 81 LQEKDMRRYRGNELAMIFQEpmTSLNPVLRIGRQLEEPiMLHMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGG 160
Cdd:PRK10535 75 LDADALAQLRREHFGFIFQR--YHLLSHLTAAQNVEVP-AVYAGLERKQRLLRAQELLQRLGL---EDRVEYQPSQLSGG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 161 MRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEmCDRVVVMYAGRVVEEAP 240
Cdd:PRK10535 149 QQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLR-DRGHTVIIVTHDPQVAAQ-AERVIEIRDGEIVRNPP 226
|
250 260 270
....*....|....*....|....*....|
gi 1119351554 241 VKElfENPQHPYTKGLIQSVPKLRQKVRRL 270
Cdd:PRK10535 227 AQE--KVNVAGGTEPVVNTASGWRQFVSGF 254
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
5-244 |
2.53e-26 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 108.96 E-value: 2.53e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTefrRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKS--VTSLSIMRllkdtpgRIAGGAVRFEGTDLTQLQ 82
Cdd:COG3845 257 VLEVENLSV---RDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSelAEALAGLR-------PPASGSIRLDGEDITGLS 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 83 EKDMRRyRGneLAMIFQEPMT-------SL--NPVLriGRQLEEPIMLHMGYSRKKAREHAihtlrlvgipraEEVVDDY 153
Cdd:COG3845 327 PRERRR-LG--VAYIPEDRLGrglvpdmSVaeNLIL--GRYRRPPFSRGGFLDRKAIRAFA------------EELIEEF 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 154 ------PHQ----LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILdlmKRLKEEQEMGM--LLITHDLGVVA 221
Cdd:COG3845 390 dvrtpgPDTparsLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIH---QRLLELRDAGAavLLISEDLDEIL 466
|
250 260
....*....|....*....|...
gi 1119351554 222 EMCDRVVVMYAGRVVEEAPVKEL 244
Cdd:COG3845 467 ALSDRIAVMYEGRIVGEVPAAEA 489
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
29-251 |
3.23e-26 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 104.07 E-value: 3.23e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 29 DFHINKGEVLGLVGESGCGKSvTSLSImrllkdtpgrIAG------GAVRFEGTDLTQLqEKDMRryrgnELAMIFQE-- 100
Cdd:COG3840 19 DLTIAAGERVAILGPSGAGKS-TLLNL----------IAGflppdsGRILWNGQDLTAL-PPAER-----PVSMLFQEnn 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 101 --PMTS--------LNPVLRIGRQleepimlhmgysrkkAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMA 170
Cdd:COG3840 82 lfPHLTvaqniglgLRPGLKLTAE---------------QRAQVEQALERVGL---AGLLDRLPGQLSGGQRQRVALARC 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 171 MSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENPQH 250
Cdd:COG3840 144 LVRKRPILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPP 223
|
.
gi 1119351554 251 P 251
Cdd:COG3840 224 P 224
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-245 |
5.36e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 104.54 E-value: 5.36e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEFRrDGgsVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRI--AGGAVRFEGTDL 78
Cdd:PRK13636 1 MEDYILKVEELNYNYS-DG--THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIlfDGKPIDYSRKGL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 79 TQLQEKdmrryrgneLAMIFQEPMTSLnpvlrIGRQLEEPI---MLHMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPH 155
Cdd:PRK13636 78 MKLRES---------VGMVFQDPDNQL-----FSASVYQDVsfgAVNLKLPEDEVRKRVDNALKRTGI---EHLKDKPTH 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 156 QLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRV 235
Cdd:PRK13636 141 CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRV 220
|
250
....*....|
gi 1119351554 236 VEEAPVKELF 245
Cdd:PRK13636 221 ILQGNPKEVF 230
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-260 |
7.80e-26 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 106.07 E-value: 7.80e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEFrrDGgsVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLK--DTPgriAGGAVRFEGTDL 78
Cdd:PRK11607 15 ALTPLLEIRNLTKSF--DG--QHAVDDVSLTIYKGEIFALLGASGCGKS----TLLRMLAgfEQP---TAGQIMLDGVDL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 79 TQlqekdMRRYRgNELAMIFQEpmTSLNPVLRIgrqlEEPIMLHMGYSRKKAREHAIHTLRLVGIPRAEEVVDDYPHQLS 158
Cdd:PRK11607 84 SH-----VPPYQ-RPINMMFQS--YALFPHMTV----EQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 159 GGMRQRVMIAMAMSCSPKLLIADEPTTALDVTI----QAQILDLMKRLKeeqeMGMLLITHDLGVVAEMCDRVVVMYAGR 234
Cdd:PRK11607 152 GGQRQRVALARSLAKRPKLLLLDEPMGALDKKLrdrmQLEVVDILERVG----VTCVMVTHDQEEAMTMAGRIAIMNRGK 227
|
250 260
....*....|....*....|....*.
gi 1119351554 235 VVEEAPVKELFENPQHPYTKGLIQSV 260
Cdd:PRK11607 228 FVQIGEPEEIYEHPTTRYSAEFIGSV 253
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
24-271 |
9.63e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 104.06 E-value: 9.63e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 24 AVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLK--DTPGRiagGAVRFEGTDLT-QLQEKDMRRYRgNELAMIFQE 100
Cdd:PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKS----TIMQLLNglHVPTQ---GSVRVDDTLITsTSKNKDIKQIR-KKVGLVFQF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 101 PMTSL--NPVLR---IGRQleepimlHMGYSRKKAREHAIHTLRLVGIprAEEVVDDYPHQLSGGMRQRVMIAMAMSCSP 175
Cdd:PRK13649 94 PESQLfeETVLKdvaFGPQ-------NFGVSQEEAEALAREKLALVGI--SESLFEKNPFELSGGQMRRVAIAGILAMEP 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 176 KLLIADEPTTALDVTIQAQILDLMKRLkEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENPQHPYTKG 255
Cdd:PRK13649 165 KILVLDEPTAGLDPKGRKELMTLFKKL-HQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQDVDFLEEKQ 243
|
250
....*....|....*.
gi 1119351554 256 LiqSVPKLRQKVRRLE 271
Cdd:PRK13649 244 L--GVPKITKFAQRLA 257
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
6-236 |
9.96e-26 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 101.97 E-value: 9.96e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTDLTQLQEKD 85
Cdd:cd03269 1 LEVENVTKRF----GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV-----LFDGKPLDIAARNR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MrRY----RGnelamifqepmtsLNPVLRIGRQLEEPIMLHmGYSRKKAREHAIHTLRLVGI-PRAEEVVDdyphQLSGG 160
Cdd:cd03269 72 I-GYlpeeRG-------------LYPKMKVIDQLVYLAQLK-GLKKEEARRRIDEWLERLELsEYANKRVE----ELSKG 132
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1119351554 161 MRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEqEMGMLLITHDLGVVAEMCDRVVVMYAGRVV 236
Cdd:cd03269 133 NQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAV 207
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
28-238 |
1.01e-25 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 102.59 E-value: 1.01e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 28 VDFHINKGEVLGLVGESGCGKSvTSLSIMRLLkDTPgriAGGAVRFEGTDLTQLQEKDMRRYRGNELAMIFQepMTSLNP 107
Cdd:PRK11629 28 VSFSIGEGEMMAIVGSSGSGKS-TLLHLLGGL-DTP---TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQ--FHHLLP 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 108 VLRIGRQLEEPIMLHmGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTAL 187
Cdd:PRK11629 101 DFTALENVAMPLLIG-KKKPAEINSRALEMLAAVGL---EHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1119351554 188 DVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMcDRVVVMYAGRVVEE 238
Cdd:PRK11629 177 DARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAE 226
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
5-235 |
1.18e-25 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 100.97 E-value: 1.18e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEfrrdggsvMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKdtpgrIAGGAVRFEGTDLTQLQEK 84
Cdd:cd03215 4 VLEVRGLSVK--------GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-----PASGEITLDGKPVTRRSPR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRyRGneLAMIFQEPmtslnpvLRIGRQLEEPIMLHMgysrkkarehaihTLrlvgipraeevvddyPHQLSGGMRQR 164
Cdd:cd03215 71 DAIR-AG--IAYVPEDR-------KREGLVLDLSVAENI-------------AL---------------SSLLSGGNQQK 112
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119351554 165 VMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEMCDRVVVMYAGRV 235
Cdd:cd03215 113 VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELA-DAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
25-260 |
1.54e-25 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 102.78 E-value: 1.54e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 25 VSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTpgriaGGAVRFEGTDLTQLQEKDMRRYrgneLAMIFQEPMT- 103
Cdd:PRK11231 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ-----SGTVFLGDKPISMLSSRQLARR----LALLPQHHLTp 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 104 ---SLNPVLRIGRQleePIMLHMGYSRKKAREH---AIHTLRLVGIprAEEVVDDyphqLSGGMRQRVMIAMAMSCSPKL 177
Cdd:PRK11231 89 egiTVRELVAYGRS---PWLSLWGRLSAEDNARvnqAMEQTRINHL--ADRRLTD----LSGGQRQRAFLAMVLAQDTPV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 178 LIADEPTTALDVTIQAQILDLMKRLKEEqemGMLLIT--HDLGVVAEMCDRVVVMYAGRVVEEApvkelfeNPQHPYTKG 255
Cdd:PRK11231 160 VLLDEPTTYLDINHQVELMRLMRELNTQ---GKTVVTvlHDLNQASRYCDHLVVLANGHVMAQG-------TPEEVMTPG 229
|
....*
gi 1119351554 256 LIQSV 260
Cdd:PRK11231 230 LLRTV 234
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
5-268 |
1.61e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 103.34 E-value: 1.61e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFRrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRiaggaVRFEGTDLTQLQEK 84
Cdd:PRK13652 3 LIETRDLCYSYS---GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGS-----VLIRGEPITKENIR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRYRGnelaMIFQEPMTSLnpvlrIGRQLEEPIM---LHMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGM 161
Cdd:PRK13652 75 EVRKFVG----LVFQNPDDQI-----FSPTVEQDIAfgpINLGLDEETVAHRVSSALHMLGL---EELRDRVPHHLSGGE 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 162 RQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPV 241
Cdd:PRK13652 143 KKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTV 222
|
250 260
....*....|....*....|....*...
gi 1119351554 242 KELFENPQHPYTKGL-IQSVPKLRQKVR 268
Cdd:PRK13652 223 EEIFLQPDLLARVHLdLPSLPKLIRSLQ 250
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
24-279 |
1.83e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 103.34 E-value: 1.83e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 24 AVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLkdTPGRIAGGAVRFEGTDLTQLQEKDMRRYRGnelaMIFQEPMT 103
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL--LPDDNPNSKITVDGITLTAKTVWDIREKVG----IVFQNPDN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 104 SLnpvlrIGRQLEEPIMLHM---GYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIA 180
Cdd:PRK13640 96 QF-----VGATVGDDVAFGLenrAVPRPEMIKIVRDVLADVGM---LDYIDSEPANLSGGQKQRVAIAGILAVEPKIIIL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 181 DEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGvVAEMCDRVVVMYAGRVVEEAPVKELFENPQHPYTKGL-IQS 259
Cdd:PRK13640 168 DESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EANMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLdIPF 246
|
250 260
....*....|....*....|.
gi 1119351554 260 VPKLRQKVRRLE-SIPGNVPD 279
Cdd:PRK13640 247 VYKLKNKLKEKGiSVPQEINT 267
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
18-247 |
1.90e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 103.24 E-value: 1.90e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 18 DGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTpgriaGGAVRFEGTDLTQlqEKDMRRYRgNELAMI 97
Cdd:PRK13633 19 ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS-----EGKVYVDGLDTSD--EENLWDIR-NKAGMV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 98 FQEPMTSLnpVLRIgrqLEEPIML---HMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAMSCS 174
Cdd:PRK13633 91 FQNPDNQI--VATI---VEEDVAFgpeNLGIPPEEIRERVDESLKKVGM---YEYRRHAPHLLSGGQKQRVAIAGILAMR 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 175 PKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEmCDRVVVMYAGRVVEEAPVKELFEN 247
Cdd:PRK13633 163 PECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
27-236 |
2.14e-25 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 101.18 E-value: 2.14e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 27 GVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTDLtqlqeKDMRRYRgnELAMIFQEPmtsln 106
Cdd:cd03226 18 DLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI-----LLNGKPI-----KAKERRK--SIGYVMQDV----- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 107 pvlriGRQL------EEPIMLHMGYSRKKAR-EHAIHTLRLvgipraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLI 179
Cdd:cd03226 81 -----DYQLftdsvrEELLLGLKELDAGNEQaETVLKDLDL------YALKERHPLSLSGGQKQRLAIAAALLSGKDLLI 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1119351554 180 ADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVV 236
Cdd:cd03226 150 FDEPTSGLDYKNMERVGELIRELA-AQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
5-244 |
2.61e-25 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 105.87 E-value: 2.61e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLktefRRDGGsvmaVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLkdtpgRIAGGAVRFEGTDLTQLQEK 84
Cdd:COG1129 256 VLEVEGL----SVGGV----VRDVSFSVRAGEILGIAGLVGAGRTELARALFGAD-----PADSGEIRLDGKPVRIRSPR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRYRgneLAM---------IFQE-------PMTSLNPVLRIGRqleepimlhmgYSRKKAREHAIHTLRLVGI--PRA 146
Cdd:COG1129 323 DAIRAG---IAYvpedrkgegLVLDlsireniTLASLDRLSRGGL-----------LDRRRERALAEEYIKRLRIktPSP 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 147 EEVVDdyphQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQeMGMLLITHDLGVVAEMCDR 226
Cdd:COG1129 389 EQPVG----NLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEG-KAVIVISSELPELLGLSDR 463
|
250
....*....|....*...
gi 1119351554 227 VVVMYAGRVVEEAPVKEL 244
Cdd:COG1129 464 ILVMREGRIVGELDREEA 481
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
24-272 |
3.26e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 102.78 E-value: 3.26e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 24 AVSGVDFHINKGEVLGLVGESGCGKS-VTSLSIMRLLKDTPGRIAGGAVRFEGtdLTQLQE-KDMRRyrgnELAMIFQEP 101
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKStMIQLTNGLIISETGQTIVGDYAIPAN--LKKIKEvKRLRK----EIGLVFQFP 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 102 MTSLnpvlrIGRQLEEPIM---LHMGYSRKKAREHAIHTLRLVGIPRaeEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLL 178
Cdd:PRK13645 100 EYQL-----FQETIEKDIAfgpVNLGENKQEAYKKVPELLKLVQLPE--DYVKRSPFELSGGQKRRVALAGIIAMDGNTL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 179 IADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENpQHPYTKGLIQ 258
Cdd:PRK13645 173 VLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN-QELLTKIEID 251
|
250
....*....|....
gi 1119351554 259 SvPKLRQKVRRLES 272
Cdd:PRK13645 252 P-PKLYQLMYKLKN 264
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
5-216 |
3.35e-25 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 100.63 E-value: 3.35e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLktEFRRDGgsVMAVSGVDFHINKGEVLGLVGESGCGKsvTSLsiMRLLkdtpgriAG------GAVRFEGTDL 78
Cdd:COG4133 2 MLEAENL--SCRRGE--RLLFSGLSFTLAAGEALALTGPNGSGK--TTL--LRIL-------AGllppsaGEVLWNGEPI 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 79 TQLQEkDMRRyrgnELAMIFQEPMtsLNPVLRIGRQLEepiMLHMGYSRKKAREHAIHTLRLVGIPRAEevvDDYPHQLS 158
Cdd:COG4133 67 RDARE-DYRR----RLAYLGHADG--LKPELTVRENLR---FWAALYGLRADREAIDEALEAVGLAGLA---DLPVRQLS 133
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1119351554 159 GGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQemGMLLI-THD 216
Cdd:COG4133 134 AGQKRRVALARLLLSPAPLWLLDEPFTALDAAGVALLAELIAAHLARG--GAVLLtTHQ 190
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
28-254 |
4.94e-25 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 101.66 E-value: 4.94e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 28 VDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRI-AGGAVRFEGTDLTQLQEKDMRRyrgnELAMIFQEPmtSLN 106
Cdd:PRK14246 29 ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIkVDGKVLYFGKDIFQIDAIKLRK----EVGMVFQQP--NPF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 107 PVLRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLVGI-PRAEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTT 185
Cdd:PRK14246 103 PHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLwKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTS 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1119351554 186 ALDVTIQAQILDLMKRLKeeQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENPQHPYTK 254
Cdd:PRK14246 183 MIDIVNSQAIEKLITELK--NEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
15-246 |
6.73e-25 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 100.38 E-value: 6.73e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 15 FRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKS-VTSLsIMRLLKDTPGRIaggavRFEGTDLTQLQEKDMRRYrgne 93
Cdd:cd03251 8 FRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKStLVNL-IPRFYDVDSGRI-----LIDGHDVRDYTLASLRRQ---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 94 LAMIFQEpmtslnpVLRIGRQLEEPIMlhmgYSRKKA-REHAIHTLRLVGiprAEEVVDDYPH-----------QLSGGM 161
Cdd:cd03251 78 IGLVSQD-------VFLFNDTVAENIA----YGRPGAtREEVEEAARAAN---AHEFIMELPEgydtvigergvKLSGGQ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 162 RQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmgMLLITHDLGVVaEMCDRVVVMYAGRVVEEAPV 241
Cdd:cd03251 144 RQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRT--TFVIAHRLSTI-ENADRIVVLEDGKIVERGTH 220
|
....*
gi 1119351554 242 KELFE 246
Cdd:cd03251 221 EELLA 225
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
5-270 |
7.70e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 102.24 E-value: 7.70e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEF-RRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRI------AGGAVRFEGTD 77
Cdd:PRK13631 21 ILRVKNLYCVFdEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIqvgdiyIGDKKNNHELI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 78 LTQLQEK--DMRRYRgNELAMIFQEPMTSLnpvlrIGRQLEEPIM---LHMGYSRKKAREHAIHTLRLVGIprAEEVVDD 152
Cdd:PRK13631 101 TNPYSKKikNFKELR-RRVSMVFQFPEYQL-----FKDTIEKDIMfgpVALGVKKSEAKKLAKFYLNKMGL--DDSYLER 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 153 YPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMgMLLITHDLGVVAEMCDRVVVMYA 232
Cdd:PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKT-VFVITHTMEHVLEVADEVIVMDK 251
|
250 260 270
....*....|....*....|....*....|....*...
gi 1119351554 233 GRVVEEAPVKELFENpQHPYTKGLIQsVPKLRQKVRRL 270
Cdd:PRK13631 252 GKILKTGTPYEIFTD-QHIINSTSIQ-VPRVIQVINDL 287
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
40-264 |
9.26e-25 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 102.19 E-value: 9.26e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 40 LVGESGCGKSvtslSIMRLLK--DTPgriAGGAVRFEGTDLTQLQEKdmRRYRGnelaMIFQEpmTSLNPVLRIGRQLEE 117
Cdd:TIGR01187 1 LLGPSGCGKT----TLLRLLAgfEQP---DSGSIMLDGEDVTNVPPH--LRHIN----MVFQS--YALFPHMTVEENVAF 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 118 PI-MLHMGYSRKKAREHAIhtLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQIL 196
Cdd:TIGR01187 66 GLkMRKVPRAEIKPRVLEA--LRLVQL---EEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQ 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 197 DLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENPQHPYTKGLIQSVPKLR 264
Cdd:TIGR01187 141 LELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINVFE 208
|
|
| PhnT |
TIGR03258 |
2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; This ATP-binding ... |
32-248 |
9.39e-25 |
|
2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Pssm-ID: 132302 [Multi-domain] Cd Length: 362 Bit Score: 102.77 E-value: 9.39e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 32 INKGEVLGLVGESGCGKSVTSLSIMRLLK--DTPGRIAGGavrfeGTDLTQLQEkdmrrYRGNeLAMIFQEpmTSLNPVL 109
Cdd:TIGR03258 28 IEAGELLALIGKSGCGKTTLLRAIAGFVKaaGLTGRIAIA-----DRDLTHAPP-----HKRG-LALLFQN--YALFPHL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 110 RIgrqlEEPIMLHMGYSRKKA---REHAIHTLRLVGIPRAEEvvdDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTA 186
Cdd:TIGR03258 95 KV----EDNVAFGLRAQKMPKadiAERVADALKLVGLGDAAA---HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 187 LDVTIQAQILDLMKRLKEE-QEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENP 248
Cdd:TIGR03258 168 LDANIRANMREEIAALHEElPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
6-238 |
1.93e-24 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 98.80 E-value: 1.93e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFRRDggsvMAVSGVDFHINKGeVLGLVGESGCGKSvtslSIMRLLKdTPGRIAGGAVRFEGTDLTqlqeKD 85
Cdd:cd03264 1 LQLENLTKRYGKK----RALDGVSLTLGPG-MYGLLGPNGAGKT----TLMRILA-TLTPPSSGTIRIDGQDVL----KQ 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRYRGnELAMIFQEPMTSlnPVLRIGRQLEEPIMLHmGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRV 165
Cdd:cd03264 67 PQKLRR-RIGYLPQEFGVY--PNFTVREFLDYIAWLK-GIPSKEVKARVDEVLELVNL---GDRAKKKIGSLSGGMRRRV 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 166 MIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmgMLLITHDLGVVAEMCDRVVVMYAGRVVEE 238
Cdd:cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRI--VILSTHIVEDVESLCNQVAVLNKGKLVFE 210
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1-248 |
2.27e-24 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 101.95 E-value: 2.27e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLlkdtpgrIAG------GAVRFE 74
Cdd:PRK09452 10 SLSPLVELRGISKSF----DGKEVISNLDLTINNGEFLTLLGPSGCGKT----TVLRL-------IAGfetpdsGRIMLD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 75 GTDLTQL-QEKdmrryrgNELAMIFQE----P-MTSLNPV---LRIGRQLEEPImlhmgysrkkaREHAIHTLRLVgipR 145
Cdd:PRK09452 75 GQDITHVpAEN-------RHVNTVFQSyalfPhMTVFENVafgLRMQKTPAAEI-----------TPRVMEALRMV---Q 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 146 AEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCD 225
Cdd:PRK09452 134 LEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSD 213
|
250 260
....*....|....*....|...
gi 1119351554 226 RVVVMYAGRVVEEAPVKELFENP 248
Cdd:PRK09452 214 RIVVMRDGRIEQDGTPREIYEEP 236
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
37-253 |
2.47e-24 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 100.17 E-value: 2.47e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 37 VLGLVGESGCGKSVTSLSIMRLLKDTPGRIAGGAVRFEGTDLtqLQEKDMRRYRgNELAMIFQEPmtslNPV-LRIGRQL 115
Cdd:PRK14271 49 VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSI--FNYRDVLEFR-RRVGMLFQRP----NPFpMSIMDNV 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 116 EEPIMLHMGYSRKKAREHAIHTLRLVGIPRA-EEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQ 194
Cdd:PRK14271 122 LAGVRAHKLVPRKEFRGVAQARLTEVGLWDAvKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEK 201
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1119351554 195 ILDLMKRLKEeqEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENPQHPYT 253
Cdd:PRK14271 202 IEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAET 258
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
6-248 |
3.16e-24 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 98.77 E-value: 3.16e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFRRDggsvMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTDLTQLqEKD 85
Cdd:cd03218 1 LRAENLSKRYGKR----KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI-----LLDGQDITKL-PMH 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRYRGneLAMIFQEPmtslnpvlRIGRQL--EEPIML---HMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGG 160
Cdd:cd03218 71 KRARLG--IGYLPQEA--------SIFRKLtvEENILAvleIRGLSKKEREEKLEELLEEFHI---THLRKSKASSLSGG 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 161 MRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAP 240
Cdd:cd03218 138 ERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILK-DRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGT 216
|
....*...
gi 1119351554 241 VKELFENP 248
Cdd:cd03218 217 PEEIAANE 224
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
6-240 |
3.26e-24 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 101.84 E-value: 3.26e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVtslsimrLLKDTPGRI--AGGAVRFEGTDLTQLQE 83
Cdd:PRK09536 4 IDVSDLSVEF----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTT-------LLRAINGTLtpTAGTVLVAGDDVEALSA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 84 KDMRRyrgnELAMIFQEPMTSLN----PVLRIGRQLEEPIMLHMGYSRKKAREHAIHTlrlVGIPR-AEEVVDdyphQLS 158
Cdd:PRK09536 73 RAASR----RVASVPQDTSLSFEfdvrQVVEMGRTPHRSRFDTWTETDRAAVERAMER---TGVAQfADRPVT----SLS 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 159 GGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLItHDLGVVAEMCDRVVVMYAGRVVEE 238
Cdd:PRK09536 142 GGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAI-HDLDLAARYCDELVLLADGRVRAA 220
|
..
gi 1119351554 239 AP 240
Cdd:PRK09536 221 GP 222
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
15-256 |
1.34e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 97.90 E-value: 1.34e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 15 FRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAggavrFEGTDLTQLQEKDMRRYRGnel 94
Cdd:PRK13648 15 FQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF-----YNNQAITDDNFEKLRKHIG--- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 95 aMIFQEPMTSLnpvlrIGRQLEEPIML----HMgYSRKKAREHAIHTLRLVG-IPRAeevvDDYPHQLSGGMRQRVMIAM 169
Cdd:PRK13648 87 -IVFQNPDNQF-----VGSIVKYDVAFglenHA-VPYDEMHRRVSEALKQVDmLERA----DYEPNALSGGQKQRVAIAG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 170 AMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEmCDRVVVMYAGRVVEEAPVKELFENPQ 249
Cdd:PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDHAE 234
|
....*..
gi 1119351554 250 HPYTKGL 256
Cdd:PRK13648 235 ELTRIGL 241
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
16-243 |
1.42e-23 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 97.07 E-value: 1.42e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 16 RRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIM-RLLKDTPGRIaggavrfegtdltqlqekdmrRYRGN-- 92
Cdd:COG1134 33 RTRREEFWALKDVSFEVERGESVGIIGRNGAGKS-TLLKLIaGILEPTSGRV---------------------EVNGRvs 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 93 ---ELAMIFQEPMTslnpvlriGRQLEEPIMLHMGYSRKKAREhaihtlrlvgipRAEEVVD--------DYP-HQLSGG 160
Cdd:COG1134 91 allELGAGFHPELT--------GRENIYLNGRLLGLSRKEIDE------------KFDEIVEfaelgdfiDQPvKTYSSG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 161 MRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAP 240
Cdd:COG1134 151 MRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRESGR-TVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGD 229
|
...
gi 1119351554 241 VKE 243
Cdd:COG1134 230 PEE 232
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
14-236 |
3.14e-23 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 95.73 E-value: 3.14e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 14 EFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTpgriaGGAVRFEGTDLTQLQEKDMRRYRGne 93
Cdd:cd03245 9 SFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT-----SGSVLLDGTDIRQLDPADLRRNIG-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 94 laMIFQEPmtslnpVLRIGrQLEEPIMLHMGYsrkkAREHAIhtLRLVGIPRAEEVVDDYPH-----------QLSGGMR 162
Cdd:cd03245 82 --YVPQDV------TLFYG-TLRDNITLGAPL----ADDERI--LRAAELAGVTDFVNKHPNgldlqigergrGLSGGQR 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119351554 163 QRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmgMLLITHDLGVVaEMCDRVVVMYAGRVV 236
Cdd:cd03245 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKT--LIIITHRPSLL-DLVDRIIVMDSGRIV 217
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
5-246 |
3.96e-23 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 99.79 E-value: 3.96e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFRRDGgsVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAggavrFEGTDLTQLQEK 84
Cdd:TIGR02203 330 DVEFRNVTFRYPGRD--RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL-----LDGHDLADYTLA 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRyrgnELAMIFQEPMTslnpvlrigrqLEEPIMLHMGYSRKKAREHAiHTLRLVGIPRAEEVVDDYP---HQ----- 156
Cdd:TIGR02203 403 SLRR----QVALVSQDVVL-----------FNDTIANNIAYGRTEQADRA-EIERALAAAYAQDFVDKLPlglDTpigen 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 157 ---LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmgMLLITHDLGVVaEMCDRVVVMYAG 233
Cdd:TIGR02203 467 gvlLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRT--TLVIAHRLSTI-EKADRIVVMDDG 543
|
250
....*....|...
gi 1119351554 234 RVVEEAPVKELFE 246
Cdd:TIGR02203 544 RIVERGTHNELLA 556
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
15-244 |
3.99e-23 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 95.63 E-value: 3.99e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 15 FRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRiaggaVRFEGTDLTQLQEKDMRRyrgnEL 94
Cdd:cd03252 8 FRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR-----VLVDGHDLALADPAWLRR----QV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 95 AMIFQEPmTSLNPVLRIGRQLEEPIMlhmgysrkkAREHAIHTLRLVG-------IPRA-EEVVDDYPHQLSGGMRQRVM 166
Cdd:cd03252 79 GVVLQEN-VLFNRSIRDNIALADPGM---------SMERVIEAAKLAGahdfiseLPEGyDTIVGEQGAGLSGGQRQRIA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1119351554 167 IAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmgMLLITHDLGVVaeMC-DRVVVMYAGRVVEEAPVKEL 244
Cdd:cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRT--VIIIAHRLSTV--KNaDRIIVMEKGRIVEQGSHDEL 223
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
11-247 |
5.19e-23 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 97.08 E-value: 5.19e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 11 LKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMR-LLKDTPGRIA-GGAVRFEgtdltqlQEKDMRR 88
Cdd:COG4586 24 LKGLFRREYREVEAVDDISFTIEPGEIVGFIGPNGAGKS-TTIKMLTgILVPTSGEVRvLGYVPFK-------RRKEFAR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 89 yrgnelamifqepmtslnpvlRIGrqleepimLHMGysrkkAREH------AIHTLRLV----GIPRAE------EVVD- 151
Cdd:COG4586 96 ---------------------RIG--------VVFG-----QRSQlwwdlpAIDSFRLLkaiyRIPDAEykkrldELVEl 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 152 -------DYP-HQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEM 223
Cdd:COG4586 142 ldlgellDTPvRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEAL 221
|
250 260
....*....|....*....|....
gi 1119351554 224 CDRVVVMYAGRVVEEAPVKELFEN 247
Cdd:COG4586 222 CDRVIVIDHGRIIYDGSLEELKER 245
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
23-244 |
6.33e-23 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 95.37 E-value: 6.33e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 23 MAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLL---KDtpgrIAGGAVRFEGTDLTQLQEKDMRRyrgnELAMIFQ 99
Cdd:cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKS----TILRLLfrfYD----VSSGSILIDGQDIREVTLDSLRR----AIGVVPQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 100 EpmTSLnpvlrigrqLEEPIMLHMGYSR---------KKAREHAIHTlRLVGIPRA-EEVVDDYPHQLSGGMRQRVMIAM 169
Cdd:cd03253 83 D--TVL---------FNDTIGYNIRYGRpdatdeeviEAAKAAQIHD-KIMRFPDGyDTIVGERGLKLSGGEKQRVAIAR 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119351554 170 AMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmgMLLITHDLGVVAEmCDRVVVMYAGRVVEEAPVKEL 244
Cdd:cd03253 151 AILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRT--TIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEEL 222
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
27-248 |
8.03e-23 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 99.41 E-value: 8.03e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 27 GVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTpgriaGGAVRFEGTDLTQLQEKDMRRyrgnELAMIFQEPMTsLN 106
Cdd:TIGR00958 499 GLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT-----GGQVLLDGVPLVQYDHHYLHR----QVALVGQEPVL-FS 568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 107 PVLR--IGRQLEEPIMLHMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPT 184
Cdd:TIGR00958 569 GSVRenIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGY---DTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEAT 645
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119351554 185 TALDVTIQAQILDLMKRlkeeQEMGMLLITHDLGVVaEMCDRVVVMYAGRVVEEAPVKELFENP 248
Cdd:TIGR00958 646 SALDAECEQLLQESRSR----ASRTVLLIAHRLSTV-ERADQILVLKKGSVVEMGTHKQLMEDQ 704
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
6-235 |
8.93e-23 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 93.05 E-value: 8.93e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKteFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTpgriaGGAVRFEGTDLTQLQEKD 85
Cdd:cd03246 1 LEVENVS--FRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT-----SGRVRLDGADISQWDPNE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRyrgnelamifqepmtslnpvlRIGRQLEEpIMLHMGysrkkarehaihTLrlvgiprAEEVvddyphqLSGGMRQRV 165
Cdd:cd03246 74 LGD---------------------HVGYLPQD-DELFSG------------SI-------AENI-------LSGGQRQRL 105
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 166 MIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAeMCDRVVVMYAGRV 235
Cdd:cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK-AAGATRIVIAHRPETLA-SADRILVLEDGRV 173
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
11-236 |
1.03e-22 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 94.71 E-value: 1.03e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 11 LKTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRI-AGGAVRFEGtdltqlQEKDMRRy 89
Cdd:cd03267 23 LKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVrVAGLVPWKR------RKKFLRR- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 90 rgneLAMIFQE---------PMTSLNPVLRIGRqleepimlhMGYSRKKAREHaihtlRLVGIPRAEEVVDDYPHQLSGG 160
Cdd:cd03267 96 ----IGVVFGQktqlwwdlpVIDSFYLLAAIYD---------LPPARFKKRLD-----ELSELLDLEELLDTPVRQLSLG 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1119351554 161 MRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVV 236
Cdd:cd03267 158 QRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
6-235 |
2.97e-22 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 95.54 E-value: 2.97e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSImrllkdtpgrIAG------GAVRFEGTDLT 79
Cdd:PRK10851 3 IEIANIKKSF----GRTQVLNDISLDIPSGQMVALLGPSGSGKT-TLLRI----------IAGlehqtsGHIRFHGTDVS 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 80 QLQEKDMRryrgneLAMIFQ-----EPMTSLNPV---LRIGRQLEEPimlHMGYSRKKArehaihtLRLVGIPRAEEVVD 151
Cdd:PRK10851 68 RLHARDRK------VGFVFQhyalfRHMTVFDNIafgLTVLPRRERP---NAAAIKAKV-------TQLLEMVQLAHLAD 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 152 DYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMY 231
Cdd:PRK10851 132 RYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMS 211
|
....
gi 1119351554 232 AGRV 235
Cdd:PRK10851 212 QGNI 215
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
9-273 |
3.28e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 94.77 E-value: 3.28e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 9 QGLKTEFRrdggsvmAVSGVDFHINKGEVLGLVGESGCGKSV-----------TSLSIMRLLKDTPGRIAGGAVRFEGTD 77
Cdd:PRK13651 14 KKLPTELK-------ALDNVSVEINQGEFIAIIGQTGSGKTTfiehlnalllpDTGTIEWIFKDEKNKKKTKEKEKVLEK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 78 LTqLQE---------KDMRRYRGnelaMIFQEPMTSLnpvlrIGRQLEEPIM---LHMGYSRKKAREHAIHTLRLVGIPr 145
Cdd:PRK13651 87 LV-IQKtrfkkikkiKEIRRRVG----VVFQFAEYQL-----FEQTIEKDIIfgpVSMGVSKEEAKKRAAKYIELVGLD- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 146 aEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMgMLLITHDLGVVAEMCD 225
Cdd:PRK13651 156 -ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKT-IILVTHDLDNVLEWTK 233
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 226 RVVVMYAGRVVEEAP-------VKELFENPQHPyTKgLIQSVPKLRQK---VRRLESI 273
Cdd:PRK13651 234 RTIFFKDGKIIKDGDtydilsdNKFLIENNMEP-PK-LLNFVNKLEKKgidVPKVTSI 289
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
27-235 |
3.50e-22 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 93.59 E-value: 3.50e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 27 GVDFHINKGEVLGLVGESGCGKSvtslSIMRLLK--DTPGriaGGAVRFEGTDLTQLQEkDMRryrgnelaMIFQEpmTS 104
Cdd:PRK11247 30 QLDLHIPAGQFVAVVGRSGCGKS----TLLRLLAglETPS---AGELLAGTAPLAEARE-DTR--------LMFQD--AR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 105 LNPVLRI----GRQLeepimlhmgysRKKAREHAIHTLRLVGI-PRAEEvvddYPHQLSGGMRQRVMIAMAMSCSPKLLI 179
Cdd:PRK11247 92 LLPWKKVidnvGLGL-----------KGQWRDAALQALAAVGLaDRANE----WPAALSGGQKQRVALARALIHRPGLLL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1119351554 180 ADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRV 235
Cdd:PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
15-245 |
4.18e-22 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 93.23 E-value: 4.18e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 15 FRRDGGSVmaVSGVDFHINKGEVLGLVGESGCGKSvTSLSI------------MRLLkdtpGRiaggavRFEGTDLTQLq 82
Cdd:COG1119 11 VRRGGKTI--LDDISWTVKPGEHWAILGPNGAGKS-TLLSLitgdlpptygndVRLF----GE------RRGGEDVWEL- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 83 ekdmRRYRG---NELAMIFQEPMTSLNPVL-----RIGRQLE-EPIMlhmgysRKKAREhaihTLRLVGIpraEEVVDDY 153
Cdd:COG1119 77 ----RKRIGlvsPALQLRFPRDETVLDVVLsgffdSIGLYREpTDEQ------RERARE----LLELLGL---AHLADRP 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 154 PHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAG 233
Cdd:COG1119 140 FGTLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDG 219
|
250
....*....|..
gi 1119351554 234 RVVEEAPVKELF 245
Cdd:COG1119 220 RVVAAGPKEEVL 231
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
20-248 |
4.68e-22 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 95.17 E-value: 4.68e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLL----KDTPGRIAggavrFEGTDLTQ--LQEKDmrryrgne 93
Cdd:PRK11432 17 GSNTVIDNLNLTIKQGTMVTLLGPSGCGKT----TVLRLVagleKPTEGQIF-----IDGEDVTHrsIQQRD-------- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 94 LAMIFQEpmTSLNPVLRIGRqleepimlHMGYSrkkarehaihtLRLVGIPRAE---------EVVD------DYPHQLS 158
Cdd:PRK11432 80 ICMVFQS--YALFPHMSLGE--------NVGYG-----------LKMLGVPKEErkqrvkealELVDlagfedRYVDQIS 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 159 GGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEE 238
Cdd:PRK11432 139 GGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQI 218
|
250
....*....|
gi 1119351554 239 APVKELFENP 248
Cdd:PRK11432 219 GSPQELYRQP 228
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
6-249 |
1.09e-21 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 92.01 E-value: 1.09e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTDLTQLqekD 85
Cdd:COG1137 4 LEAENLVKSY----GKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRI-----FLDGEDITHL---P 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 M-RRYRgneLAMIF--QEPmtSlnpvlrIGRQL--EEPIML---HMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQL 157
Cdd:COG1137 72 MhKRAR---LGIGYlpQEA--S------IFRKLtvEDNILAvleLRKLSKKEREERLEELLEEFGI---THLRKSKAYSL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 158 SGGMRQRVMIAMAMSCSPKLLIADEPTTALD-VTIqAQILDLMKRLKeEQEMGMlLIT-HD----LGVvaemCDRVVVMY 231
Cdd:COG1137 138 SGGERRRVEIARALATNPKFILLDEPFAGVDpIAV-ADIQKIIRHLK-ERGIGV-LITdHNvretLGI----CDRAYIIS 210
|
250
....*....|....*...
gi 1119351554 232 AGRVVEEAPVKELFENPQ 249
Cdd:COG1137 211 EGKVLAEGTPEEILNNPL 228
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
20-244 |
1.14e-21 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 92.07 E-value: 1.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIM-RLLKdtpgrIAGGAVRFEGTDLTqlqekdmrRYRGNELAMIF 98
Cdd:COG4604 12 GGKVVLDDVSLTIPKGGITALIGPNGAGKS-TLLSMIsRLLP-----PDSGEVLVDGLDVA--------TTPSRELAKRL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 99 ----QEPmtSLNPVLRIgRQLEE----PimlhmgYSR-------KKAREHAIHTLRLvgipraEEVVDDYPHQLSGGMRQ 163
Cdd:COG4604 78 ailrQEN--HINSRLTV-RELVAfgrfP------YSKgrltaedREIIDEAIAYLDL------EDLADRYLDELSGGQRQ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 164 RVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKE 243
Cdd:COG4604 143 RAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEE 222
|
.
gi 1119351554 244 L 244
Cdd:COG4604 223 I 223
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
35-248 |
1.23e-21 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 92.54 E-value: 1.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 35 GEVLGLVGESGCGKSvtslSIMRLLkdtpGR---IAGGAVRFEGTDLTQLQEKDMRRyrgnELAMIFQ-----EPMTsLN 106
Cdd:PRK10575 37 GKVTGLIGHNGSGKS----TLLKML----GRhqpPSEGEILLDAQPLESWSSKAFAR----KVAYLPQqlpaaEGMT-VR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 107 PVLRIGRQleePIMLHMGYSRKKAREHAIHTLRLVGI-PRAEEVVDdyphQLSGGMRQRVMIAMAMSCSPKLLIADEPTT 185
Cdd:PRK10575 104 ELVAIGRY---PWHGALGRFGAADREKVEEAISLVGLkPLAHRLVD----SLSGGERQRAWIAMLVAQDSRCLLLDEPTS 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 186 ALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENP 248
Cdd:PRK10575 177 ALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
20-238 |
1.31e-21 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 91.47 E-value: 1.31e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSVtslsimrLLKDTPG--RIAGGAVRFEGTDLTQLQEKDMRRYRgNELAMI 97
Cdd:PRK10908 13 GGRQALQGVTFHMRPGEMAFLTGHSGAGKST-------LLKLICGieRPSAGKIWFSGHDITRLKNREVPFLR-RQIGMI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 98 FQEPMtslnpvLRIGRQLEEPIMLHM---GYSRKKAREHAIHTLRLVGIPraeEVVDDYPHQLSGGMRQRVMIAMAMSCS 174
Cdd:PRK10908 85 FQDHH------LLMDRTVYDNVAIPLiiaGASGDDIRRRVSAALDKVGLL---DKAKNFPIQLSGGEQQRVGIARAVVNK 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119351554 175 PKLLIADEPTTALDVTIQAQILdlmkRLKEE-QEMG--MLLITHDLGVVAEMCDRVVVMYAGRVVEE 238
Cdd:PRK10908 156 PAVLLADEPTGNLDDALSEGIL----RLFEEfNRVGvtVLMATHDIGLISRRSYRMLTLSDGHLHGG 218
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
24-246 |
1.31e-21 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 91.52 E-value: 1.31e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 24 AVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTDLTQLQEKDMRryrgNELAMIFQEPM- 102
Cdd:cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI-----LIDGIDIRDISRKSLR----SMIGVVLQDTFl 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 103 --TSLNPVLRIGRQL--EEPIMlhmgysrKKAREHAIHTLrlvgIPRAEEVVDDYP----HQLSGGMRQRVMIAMAMSCS 174
Cdd:cd03254 89 fsGTIMENIRLGRPNatDEEVI-------EAAKEAGAHDF----IMKLPNGYDTVLgengGNLSQGERQLLAIARAMLRD 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1119351554 175 PKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmgMLLITHDLGVVAEmCDRVVVMYAGRVVEEAPVKELFE 246
Cdd:cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMKGRT--SIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLA 226
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
17-230 |
1.58e-21 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 95.05 E-value: 1.58e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 17 RDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLKDTpGRIAGGAVRFEGTDLTQLQEKDMRRyrgnELAM 96
Cdd:TIGR02857 330 AYPGRRPALRPVSFTVPPGERVALVGPSGAGKS----TLLNLLLGF-VDPTEGSIAVNGVPLADADADSWRD----QIAW 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 97 IFQepmtslNPVLRIGRQLEEpimlhMGYSRKKAREHAI-HTLRLVGIPRAEE--------VVDDYPHQLSGGMRQRVMI 167
Cdd:TIGR02857 401 VPQ------HPFLFAGTIAEN-----IRLARPDASDAEIrEALERAGLDEFVAalpqgldtPIGEGGAGLSGGQAQRLAL 469
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 168 AMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmgMLLITHDLGVVAEMcDRVVVM 230
Cdd:TIGR02857 470 ARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRT--VLLVTHRLALAALA-DRIVVL 529
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
19-244 |
2.08e-21 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 95.03 E-value: 2.08e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 19 GGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLKDtPgriAGGAVRFEGTDLTQLQEKDMRRYrgneLAMIF 98
Cdd:PRK13657 345 DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKS-TLINLLQRVFD-P---QSGRILIDGTDIRTVTRASLRRN----IAVVF 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 99 QEPM---TSLNPVLRIGRQLEEPIMLHMGYSRKKAREHaihtlrlvgIPRAEE----VVDDYPHQLSGGMRQRVMIAMAM 171
Cdd:PRK13657 416 QDAGlfnRSIEDNIRVGRPDATDEEMRAAAERAQAHDF---------IERKPDgydtVVGERGRQLSGGERQRLAIARAL 486
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 172 SCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmgMLLITHDLGVVAEmCDRVVVMYAGRVVEEAPVKEL 244
Cdd:PRK13657 487 LKDPPILILDEATSALDVETEAKVKAALDELMKGRT--TFIIAHRLSTVRN-ADRILVFDNGRVVESGSFDEL 556
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
6-237 |
2.55e-21 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 90.16 E-value: 2.55e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFRRDGGSVMavSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTDLTQLQEKD 85
Cdd:cd03369 7 IEVENLSVRYAPDLPPVL--KNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI-----EIDGIDISTIPLED 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRyrgnELAMIFQEPmTSLNPVLRIGRQLEEPimlhmgYSRKKAREhaihTLRlvgipraeevVDDYPHQLSGGMRQRV 165
Cdd:cd03369 80 LRS----SLTIIPQDP-TLFSGTIRSNLDPFDE------YSDEEIYG----ALR----------VSEGGLNLSQGQRQLL 134
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 166 MIAMAMSCSPKLLIADEPTTALDVTIQAQIldlMKRLKEE-QEMGMLLITHDLGVVAEmCDRVVVMYAGRVVE 237
Cdd:cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALI---QKTIREEfTNSTILTIAHRLRTIID-YDKILVMDAGEVKE 203
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-247 |
4.35e-21 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 93.84 E-value: 4.35e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLKDT-PGRIAGGAVRFEGTDLT 79
Cdd:PRK13549 1 MMEYLLEMKNITKTF----GGVKALDNVSLKVRAGEIVSLCGENGAGKS----TLMKVLSGVyPHGTYEGEIIFEGEELQ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 80 QLQEKDMRRyrgNELAMIFQEPMtsLNPVLRIGRQL---EEPIMLH-MGYSRKKAREHAIhtLRLVG--IPRAEEVVDdy 153
Cdd:PRK13549 73 ASNIRDTER---AGIAIIHQELA--LVKELSVLENIflgNEITPGGiMDYDAMYLRAQKL--LAQLKldINPATPVGN-- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 154 phqLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEMCDRVVVMYAG 233
Cdd:PRK13549 144 ---LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLK-AHGIACIYISHKLNEVKAISDTICVIRDG 219
|
250
....*....|....
gi 1119351554 234 RVVEEAPVKELFEN 247
Cdd:PRK13549 220 RHIGTRPAAGMTED 233
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
27-247 |
5.51e-21 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 89.91 E-value: 5.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 27 GVDFHINKGEVLGLVGESGCGKSvtslSIMRLLKdtpgR---IAGGAVRFEGTDLTQLQEKDMRRyrgnELAMIFQEPM- 102
Cdd:cd03249 21 GLSLTIPPGKTVALVGSSGCGKS----TVVSLLE----RfydPTSGEILLDGVDIRDLNLRWLRS----QIGLVSQEPVl 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 103 --TSLNPVLRIGR---QLEEPImlhmgysrKKAREHAIHTLrLVGIP-RAEEVVDDYPHQLSGGMRQRVMIAMAMSCSPK 176
Cdd:cd03249 89 fdGTIAENIRYGKpdaTDEEVE--------EAAKKANIHDF-IMSLPdGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119351554 177 LLIADEPTTALDVTIQAQILDLMKRLKEeqEMGMLLITHDLGVVAEmCDRVVVMYAGRVVEEAPVKELFEN 247
Cdd:cd03249 160 ILLLDEATSALDAESEKLVQEALDRAMK--GRTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHDELMAQ 227
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
30-264 |
9.98e-21 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 88.75 E-value: 9.98e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 30 FHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRI--AGGAVRFEGTDLTQLQEKdmrryrgNELAMIFqePMTSLNP 107
Cdd:TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVkvAGASPGKGWRHIGYVPQR-------HEFAWDF--PISVAHT 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 108 VLRiGRQLeepimlHMGYSRKKAREHAI---HTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPT 184
Cdd:TIGR03771 72 VMS-GRTG------HIGWLRRPCVADFAavrDALRRVGL---TELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPF 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 185 TALDVTIQAQILDLMKRLKEEqEMGMLLITHDLGVVAEMCDRvVVMYAGRVVEEAPVKELFENPQHPYTKGLIQSVPKLR 264
Cdd:TIGR03771 142 TGLDMPTQELLTELFIELAGA-GTAILMTTHDLAQAMATCDR-VVLLNGRVIADGTPQQLQDPAPWMTTFGVSDSSPLLR 219
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
24-245 |
1.44e-20 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 89.56 E-value: 1.44e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 24 AVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMrllkdtpgriagGAVRFEGTDLTQLQEKDMRRYRGNELAMIFQ-EPM 102
Cdd:PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALM------------GFVRLASGKISILGQPTRQALQKNLVAYVPQsEEV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 103 TSLNPVLrigrqLEEPIML----HMGYSRK-KAREHAIhtlrlvgIPRAEEVVD--DYPH----QLSGGMRQRVMIAMAM 171
Cdd:PRK15056 90 DWSFPVL-----VEDVVMMgrygHMGWLRRaKKRDRQI-------VTAALARVDmvEFRHrqigELSGGQKKRVFLARAI 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119351554 172 SCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMgMLLITHDLGVVAEMCDrVVVMYAGRVVEEAPVKELF 245
Cdd:PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKT-MLVSTHNLGSVTEFCD-YTVMVKGTVLASGPTETTF 229
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
6-243 |
1.59e-20 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 89.37 E-value: 1.59e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFRRDGGS-VMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSImrllkdtpgrIAG------GAVRFEGTDL 78
Cdd:COG1101 2 LELKNLSKTFNPGTVNeKRALDGLNLTIEEGDFVTVIGSNGAGKS-TLLNA----------IAGslppdsGSILIDGKDV 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 79 TQLqeKDMRRYRgnELAMIFQEPMTSLNPVLRIgrqlEEPimLHMGYSRKKARehaihTLRLvGIPRAEEvvDDYPHQ-- 156
Cdd:COG1101 71 TKL--PEYKRAK--YIGRVFQDPMMGTAPSMTI----EEN--LALAYRRGKRR-----GLRR-GLTKKRR--ELFRELla 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 157 ----------------LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVV 220
Cdd:COG1101 133 tlglglenrldtkvglLSGGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQA 212
|
250 260
....*....|....*....|...
gi 1119351554 221 AEMCDRVVVMYAGRVVEEAPVKE 243
Cdd:COG1101 213 LDYGNRLIMMHEGRIILDVSGEE 235
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
24-240 |
1.98e-20 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 88.99 E-value: 1.98e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 24 AVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAGGAVRFEGTdltqlqekdmrryrGNELAMIFQE--- 100
Cdd:PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP--------------GAERGVVFQNegl 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 101 -PMTSLNPVLRIGRQLEepimlhmGYSRKKAREHAIHTLRLVGIPRAEEvvdDYPHQLSGGMRQRVMIAMAMSCSPKLLI 179
Cdd:PRK11248 82 lPWRNVQDNVAFGLQLA-------GVEKMQRLEIAHQMLKKVGLEGAEK---RYIWQLSGGQRQRVGIARALAANPQLLL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 180 ADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMY--AGRVVEEAP 240
Cdd:PRK11248 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSpgPGRVVERLP 214
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
6-249 |
2.86e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 88.64 E-value: 2.86e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLkTEFRRDGGSvmAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLlkDTPGRiagGAVRFEGTDLTQLQEKD 85
Cdd:PRK13647 5 IEVEDL-HFRYKDGTK--ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI--YLPQR---GRVKVMGREVNAENEKW 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRryrgNELAMIFQEPMTSLnpvlrIGRQLEEPIM---LHMGYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMR 162
Cdd:PRK13647 77 VR----SKVGLVFQDPDDQV-----FSSTVWDDVAfgpVNMGLDKDEVERRVEEALKAVRM---WDFRDKPPYHLSYGQK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 163 QRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMgMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPvK 242
Cdd:PRK13647 145 KRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKT-VIVATHDVDLAAEWADQVIVLKEGRVLAEGD-K 222
|
....*..
gi 1119351554 243 ELFENPQ 249
Cdd:PRK13647 223 SLLTDED 229
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
25-216 |
5.63e-20 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 86.38 E-value: 5.63e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 25 VSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLKDtPGRIAGGAVRFEGTDLTQLQ-EKdmRRyrgneLAMIFQEPMt 103
Cdd:COG4136 17 LAPLSLTVAPGEILTLMGPSGSGKS-TLLAAIAGTLS-PAFSASGEVLLNGRRLTALPaEQ--RR-----IGILFQDDL- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 104 sLNPVLRIGRQLeePIMLHMGYSRKKAREHAIHTLRLVGIPraeEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEP 183
Cdd:COG4136 87 -LFPHLSVGENL--AFALPPTIGRAQRRARVEQALEEAGLA---GFADRDPATLSGGQRARVALLRALLAEPRALLLDEP 160
|
170 180 190
....*....|....*....|....*....|...
gi 1119351554 184 TTALDVTIQAQILDLMKRLKEEQEMGMLLITHD 216
Cdd:COG4136 161 FSKLDAALRAQFREFVFEQIRQRGIPALLVTHD 193
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
24-248 |
1.21e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 86.96 E-value: 1.21e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 24 AVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAGGAVrfEGTDLTQLQEkdMRRYRGnelaMIFQEPMT 103
Cdd:PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGI--DTGDFSKLQG--IRKLVG----IVFQNPET 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 104 SLnpvlrIGRQLEEpimlHMGYSRKKAREHAIHTLRLVGIPRAEEVVDDY----PHQLSGGMRQRVMIAMAMSCSPKLLI 179
Cdd:PRK13644 89 QF-----VGRTVEE----DLAFGPENLCLPPIEIRKRVDRALAEIGLEKYrhrsPKTLSGGQGQCVALAGILTMEPECLI 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1119351554 180 ADEPTTALDVTIQAQILDLMKRLKEEQEMgMLLITHDLGVVaEMCDRVVVMYAGRVVEEAPVKELFENP 248
Cdd:PRK13644 160 FDEVTSMLDPDSGIAVLERIKKLHEKGKT-IVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENVLSDV 226
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-248 |
1.80e-19 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 86.20 E-value: 1.80e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTpgriaGGAVRFEGTDLTQ 80
Cdd:PRK11300 1 MSQPLLSVSGLMMRF----GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT-----GGTILLRGQHIEG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 81 LQEKDMRRY---RGNELAMIFQEpMTSL-NPVLRIGRQLEEPIMLHM----GYSR--KKAREHAIHTLRLVGIpraEEVV 150
Cdd:PRK11300 72 LPGHQIARMgvvRTFQHVRLFRE-MTVIeNLLVAQHQQLKTGLFSGLlktpAFRRaeSEALDRAATWLERVGL---LEHA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 151 DDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVM 230
Cdd:PRK11300 148 NRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVV 227
|
250
....*....|....*...
gi 1119351554 231 YAGRVVEEAPVKELFENP 248
Cdd:PRK11300 228 NQGTPLANGTPEEIRNNP 245
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
20-264 |
1.94e-19 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 86.19 E-value: 1.94e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLkdTPgriAGGAVRFEGTDLTQLQEKDMRRyrgnELAMIFQ 99
Cdd:PRK10253 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM--TP---AHGHVWLDGEHIQHYASKEVAR----RIGLLAQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 100 EPMT----SLNPVLRIGRQLEEPIMLHMgysRKKAREHAIHTLRLVGIPR-AEEVVDdyphQLSGGMRQRVMIAMAMSCS 174
Cdd:PRK10253 89 NATTpgdiTVQELVARGRYPHQPLFTRW---RKEDEEAVTKAMQATGITHlADQSVD----TLSGGQRQRAWIAMVLAQE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 175 PKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFenpqhpyTK 254
Cdd:PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV-------TA 234
|
250
....*....|
gi 1119351554 255 GLIQSVPKLR 264
Cdd:PRK10253 235 ELIERIYGLR 244
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
12-238 |
2.52e-19 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 84.89 E-value: 2.52e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 12 KTEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIM-RLLKDTPGRIAGgavrfegtdltqlqekdmrryR 90
Cdd:cd03220 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKS-TLLRLLaGIYPPDSGTVTV---------------------R 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 91 GN-----ELAMIFQEPMTSLNPVLRIGRQleepimlhMGYSRKKAREhaihtlrlvgipRAEEVVD--------DYP-HQ 156
Cdd:cd03220 83 GRvssllGLGGGFNPELTGRENIYLNGRL--------LGLSRKEIDE------------KIDEIIEfselgdfiDLPvKT 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 157 LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEeQEMGMLLITHDLGVVAEMCDRVVVMYAGRVV 236
Cdd:cd03220 143 YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK-QGKTVILVSHDPSSIKRLCDRALVLEKGKIR 221
|
..
gi 1119351554 237 EE 238
Cdd:cd03220 222 FD 223
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
24-246 |
3.70e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 85.94 E-value: 3.70e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 24 AVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAGGAVRFEGTDltqlQEKDMRRYRgNELAMIFQEPMT 103
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTS----KQKEIKPVR-KKVGVVFQFPES 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 104 SLnpvlrigrqLEEPIM-------LHMGYSRKKAREHAIHTLRLVGIprAEEVVDDYPHQLSGGMRQRVMIAMAMSCSPK 176
Cdd:PRK13643 96 QL---------FEETVLkdvafgpQNFGIPKEKAEKIAAEKLEMVGL--ADEFWEKSPFELSGGQMRRVAIAGILAMEPE 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 177 LLIADEPTTALDVTIQAQILDLMKRLKEEQEMgMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFE 246
Cdd:PRK13643 165 VLVLDEPTAGLDPKARIEMMQLFESIHQSGQT-VVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
6-238 |
1.50e-18 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 86.39 E-value: 1.50e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTsLSIMRLLKD---TPGRI---------------- 66
Cdd:TIGR03269 1 IEVKNLTKKF----DGKEVLKNISFTIEEGEVLGILGRSGAGKSVL-MHVLRGMDQyepTSGRIiyhvalcekcgyverp 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 67 ---------AGGAVRFEGTDLTQLQEKDMRRYRgNELAMIFQ------EPMTSLNPVLrigRQLEEpimlhMGYSRKKAR 131
Cdd:TIGR03269 76 skvgepcpvCGGTLEPEEVDFWNLSDKLRRRIR-KRIAIMLQrtfalyGDDTVLDNVL---EALEE-----IGYEGKEAV 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 132 EHAIHTLRLVGIP-RAEEVVDDyphqLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGM 210
Cdd:TIGR03269 147 GRAVDLIEMVQLShRITHIARD----LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISM 222
|
250 260
....*....|....*....|....*...
gi 1119351554 211 LLITHDLGVVAEMCDRVVVMYAGRVVEE 238
Cdd:TIGR03269 223 VLTSHWPEVIEDLSDKAIWLENGEIKEE 250
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
29-244 |
1.54e-18 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 83.09 E-value: 1.54e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 29 DFHINKGEVLGLVGESGCGKSvTSLSIMRLLKdTPgriAGGAVRFEGTDLTQLQEKdmRRyrgnELAMIFQEpmTSLNPV 108
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKS-TLLNLIAGFL-TP---ASGSLTLNGQDHTTTPPS--RR----PVSMLFQE--NNLFSH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 109 LRIGRQLEepIMLHMGYSRKKAREHAI-HTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTAL 187
Cdd:PRK10771 86 LTVAQNIG--LGLNPGLKLNAAQREKLhAIARQMGI---EDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSAL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1119351554 188 DVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKEL 244
Cdd:PRK10771 161 DPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDEL 217
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
27-246 |
2.99e-18 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 82.42 E-value: 2.99e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 27 GVDFHINKGEVLGLVGESGCGKSVTSLSIMrllkdtpGR----IAGGAVRFEGTDLTQLqEKDMRRYRGneLAMIFQEPM 102
Cdd:COG0396 18 GVNLTIKPGEVHAIMGPNGSGKSTLAKVLM-------GHpkyeVTSGSILLDGEDILEL-SPDERARAG--IFLAFQYPV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 103 ------------TSLNPVlrigRQLEEPIMLhmgySRKKAREhaihTLRLVGIPraeevvDDYPHQ-----LSGGMRQRV 165
Cdd:COG0396 88 eipgvsvsnflrTALNAR----RGEELSARE----FLKLLKE----KMKELGLD------EDFLDRyvnegFSGGEKKRN 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 166 MIA-MAMsCSPKLLIADEPTTALDV-TIQAqILDLMKRLKEEqEMGMLLITH-----DLGVVaemcDRVVVMYAGRVVEE 238
Cdd:COG0396 150 EILqMLL-LEPKLAILDETDSGLDIdALRI-VAEGVNKLRSP-DRGILIITHyqrilDYIKP----DFVHVLVDGRIVKS 222
|
....*...
gi 1119351554 239 APvKELFE 246
Cdd:COG0396 223 GG-KELAL 229
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
5-246 |
4.23e-18 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 84.88 E-value: 4.23e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLKDT-PGRIAGGAVRFEGTdltQLQE 83
Cdd:TIGR02633 1 LLEMKGIVKTF----GGVKALDGIDLEVRPGECVGLCGENGAGKS----TLMKILSGVyPHGTWDGEIYWSGS---PLKA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 84 KDMRRYRGNELAMIFQE----PMTSLNPVLRIGRQLEEPIMLhMGYSRKKAREHAI-HTLRLVGIPRAEEVVDdyphqLS 158
Cdd:TIGR02633 70 SNIRDTERAGIVIIHQEltlvPELSVAENIFLGNEITLPGGR-MAYNAMYLRAKNLlRELQLDADNVTRPVGD-----YG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 159 GGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEE 238
Cdd:TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLK-AHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222
|
....*...
gi 1119351554 239 APVKELFE 246
Cdd:TIGR02633 223 KDMSTMSE 230
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
29-235 |
6.85e-18 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 81.06 E-value: 6.85e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 29 DFHINKGEVLGLVGESGCGKSvTSLSIMRLLkDTPgriAGGAVRFEGTDLTQLQEkdmrrYRgNELAMIFQEpmTSLNPV 108
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKS-TLLNLIAGF-IEP---ASGSIKVNDQSHTGLAP-----YQ-RPVSMLFQE--NNLFAH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 109 LRIGRQLEepIMLHMGYSRKKAREHAIHTL-RLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTAL 187
Cdd:TIGR01277 85 LTVRQNIG--LGLHPGLKLNAEQQEKVVDAaQQVGI---ADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSAL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1119351554 188 DVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRV 235
Cdd:TIGR01277 160 DPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
28-238 |
1.02e-17 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 83.56 E-value: 1.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 28 VDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKdtpgrIAGGAVRFEGTDLTQLQEKDmRRYRGneLAMIFQEPMTSlnp 107
Cdd:PRK15439 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRP-----ARGGRIMLNGKEINALSTAQ-RLARG--LVYLPEDRQSS--- 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 108 vlriGRQLEEPI------MLH--MGYSRKKAREHAI--HTLRLVGIPRAEEvvDDYPHQLSGGMRQRVMIAMAMSCSPKL 177
Cdd:PRK15439 351 ----GLYLDAPLawnvcaLTHnrRGFWIKPARENAVleRYRRALNIKFNHA--EQAARTLSGGNQQKVLIAKCLEASPQL 424
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119351554 178 LIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEE 238
Cdd:PRK15439 425 LIVDEPTRGVDVSARNDIYQLIRSIA-AQNVAVLFISSDLEEIEQMADRVLVMHQGEISGA 484
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
25-254 |
1.03e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 81.62 E-value: 1.03e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 25 VSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLKDTPGRI-AGGAVRFEGTDLTQlQEKDMRRYRgNELAMIFQEPmt 103
Cdd:PRK14258 23 LEGVSMEIYQSKVTAIIGPSGCGKS-TFLKCLNRMNELESEVrVEGRVEFFNQNIYE-RRVNLNRLR-RQVSMVHPKP-- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 104 SLNPVlrigrqleePIMLHMGYSRKKAREHAihTLRLVGIP----RAEEVVDDYPHQ-------LSGGMRQRVMIAMAMS 172
Cdd:PRK14258 98 NLFPM---------SVYDNVAYGVKIVGWRP--KLEIDDIVesalKDADLWDEIKHKihksaldLSGGQQQRLCIARALA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 173 CSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYA-----GRVVEEAPVKELFEN 247
Cdd:PRK14258 167 VKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGnenriGQLVEFGLTKKIFNS 246
|
....*..
gi 1119351554 248 PQHPYTK 254
Cdd:PRK14258 247 PHDSRTR 253
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
24-237 |
1.25e-17 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 80.23 E-value: 1.25e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 24 AVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTDLTQLQEKDMRRyrgnELAMIFQEPMT 103
Cdd:cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI-----LIDGVDISKIGLHDLRS----RISIIPQDPVL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 104 -------SLNPvlrIGRQLEEPImlhmgysrkkarehaIHTLRLVGIpraEEVVDDYPHQL-----------SGGMRQRV 165
Cdd:cd03244 90 fsgtirsNLDP---FGEYSDEEL---------------WQALERVGL---KEFVESLPGGLdtvveeggenlSVGQRQLL 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 166 MIAMAMSCSPKLLIADEPTTALDVTIQAQIldlMKRLKEE-QEMGMLLITHDLGVVAEmCDRVVVMYAGRVVE 237
Cdd:cd03244 149 CLARALLRKSKILVLDEATASVDPETDALI---QKTIREAfKDCTVLTIAHRLDTIID-SDRILVLDKGRVVE 217
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
29-236 |
1.66e-17 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 79.84 E-value: 1.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 29 DFHINKGEVLGLVGESGCGKSvTSLSIMRLLkDTPgriAGGAVRFEGTDLTQLQEKDmrryrgNELAMIFQEPMT----- 103
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKS-TLLNLIAGF-ETP---QSGRVLINGVDVTAAPPAD------RPVSMLFQENNLfahlt 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 104 -------SLNPVLRIG---RQLEEPIMLHMGYSRKKAREhaihtlrlvgipraeevvddyPHQLSGGMRQRVMIAMAMSC 173
Cdd:cd03298 87 veqnvglGLSPGLKLTaedRQAIEVALARVGLAGLEKRL---------------------PGELSGGERQRVALARVLVR 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 174 SPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVV 236
Cdd:cd03298 146 DKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2-254 |
1.67e-17 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 80.98 E-value: 1.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 2 TSKLLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAGGAVRFEGTDL--T 79
Cdd:PRK14243 7 TETVLRTENLNVYY----GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLyaP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 80 QLQEKDMRRYRGnelaMIFQEPmtslNPvlrigrqLEEPIMLHMGYSRK------KAREHAIHTLRLVGIprAEEVVD-- 151
Cdd:PRK14243 83 DVDPVEVRRRIG----MVFQKP----NP-------FPKSIYDNIAYGARingykgDMDELVERSLRQAAL--WDEVKDkl 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 152 -DYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmgMLLITHDLGVVAEMCDRVVVM 230
Cdd:PRK14243 146 kQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYT--IIIVTHNMQQAARVSDMTAFF 223
|
250 260 270
....*....|....*....|....*....|...
gi 1119351554 231 YA---------GRVVEEAPVKELFENPQHPYTK 254
Cdd:PRK14243 224 NVeltegggryGYLVEFDRTEKIFNSPQQQATR 256
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
25-245 |
1.75e-17 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 80.27 E-value: 1.75e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 25 VSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLkdTPGriaGGAVRFEGTDLTQLQEKDMRRYRgnelAMIFQepmts 104
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKS-TLLARMAGL--LPG---QGEILLNGRPLSDWSAAELARHR----AYLSQ----- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 105 lnpvlrigRQLEEPIM-----LHMGYSRKKAREHAIHTLRLvgIPRAEEVVDDYP---HQLSGGMRQRVMIAMAM----- 171
Cdd:COG4138 77 --------QQSPPFAMpvfqyLALHQPAGASSEAVEQLLAQ--LAEALGLEDKLSrplTQLSGGEWQRVRLAAVLlqvwp 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1119351554 172 SCSP--KLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELF 245
Cdd:COG4138 147 TINPegQLLLLDEPMNSLDVAQQAALDRLLRELC-QQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVM 221
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
6-217 |
2.29e-17 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 82.79 E-value: 2.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKteFRRDGGSVmAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLkDTPGriagGAVRFEGTDLTQLQEKD 85
Cdd:TIGR02868 335 LELRDLS--AGYPGAPP-VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLL-DPLQ----GEVTLDGVPVSSLDQDE 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRYRG--NELAMIFQepmTSLNPVLRIGRQleepimlhmgysrKKAREHAIHTLRLVGIpraEEVVDDYPH-------- 155
Cdd:TIGR02868 407 VRRRVSvcAQDAHLFD---TTVRENLRLARP-------------DATDEELWAALERVGL---ADWLRALPDgldtvlge 467
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119351554 156 ---QLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMkrLKEEQEMGMLLITHDL 217
Cdd:TIGR02868 468 ggaRLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL--LAALSGRTVVLITHHL 530
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
6-247 |
3.25e-17 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 78.72 E-value: 3.25e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEfrRDGGSVmaVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLlkdtPG-RIAGGAVRFEGTDLTQLqEK 84
Cdd:cd03217 1 LEIKDLHVS--VGGKEI--LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH----PKyEVTEGEILFKGEDITDL-PP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRYRGneLAMIFQEPMtslnpvlrigrqleepimlhmgysrkkarehAIHTLRLVGIPRAeevVDDyphQLSGGMRQR 164
Cdd:cd03217 72 EERARLG--IFLAFQYPP-------------------------------EIPGVKNADFLRY---VNE---GFSGGEKKR 112
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 165 VMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEqEMGMLLITHdLGVVAEMC--DRVVVMYAGRVVEEAP-- 240
Cdd:cd03217 113 NEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE-GKSVLIITH-YQRLLDYIkpDRVHVLYDGRIVKSGDke 190
|
....*...
gi 1119351554 241 -VKELFEN 247
Cdd:cd03217 191 lALEIEKK 198
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
19-248 |
3.46e-17 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 81.04 E-value: 3.46e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 19 GGSVMAVSGVDFHINKGEVLGLVGESGCGKSVtslsimrLLKDTPG--RIAGGAVRFEGTDLTQLQEKDmrryRGneLAM 96
Cdd:PRK11650 14 DGKTQVIKGIDLDVADGEFIVLVGPSGCGKST-------LLRMVAGleRITSGEIWIGGRVVNELEPAD----RD--IAM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 97 IFQepmtslNPVLRigrqleePIML---HMGYSRKKAR----------EHAIHTLRLvgipraEEVVDDYPHQLSGGMRQ 163
Cdd:PRK11650 81 VFQ------NYALY-------PHMSvreNMAYGLKIRGmpkaeieervAEAARILEL------EPLLDRKPRELSGGQRQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 164 RVMIAMAMSCSPKLLIADEPTTALD----VTIQAQILDLMKRLKEEQemgmLLITHDLGVVAEMCDRVVVMYAGRvVEE- 238
Cdd:PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDaklrVQMRLEIQRLHRRLKTTS----LYVTHDQVEAMTLADRVVVMNGGV-AEQi 216
|
250
....*....|.
gi 1119351554 239 -APVkELFENP 248
Cdd:PRK11650 217 gTPV-EVYEKP 226
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
20-263 |
4.22e-17 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 81.23 E-value: 4.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLKDtpgrIAGGAVRFEGTDLTQLQEKDmrryRGneLAMIFQ 99
Cdd:PRK11000 14 GDVVISKDINLDIHEGEFVVFVGPSGCGKS-TLLRMIAGLED----ITSGDLFIGEKRMNDVPPAE----RG--VGMVFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 100 EpmTSLNPVLRIGRqleepimlHMGYSRKKAR----------EHAIHTLRLvgipraEEVVDDYPHQLSGGMRQRVMIAM 169
Cdd:PRK11000 83 S--YALYPHLSVAE--------NMSFGLKLAGakkeeinqrvNQVAEVLQL------AHLLDRKPKALSGGQRQRVAIGR 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 170 AMSCSPKLLIADEPTTALD----VTIQAQILDLMKRLKEEqemgMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELF 245
Cdd:PRK11000 147 TLVAEPSVFLLDEPLSNLDaalrVQMRIEISRLHKRLGRT----MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222
|
250
....*....|....*...
gi 1119351554 246 ENPQHPYTKGLIQSvPKL 263
Cdd:PRK11000 223 HYPANRFVAGFIGS-PKM 239
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
2-277 |
5.21e-17 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 81.59 E-value: 5.21e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 2 TSKLLEVQGLKTEFRrdggSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLL-----KDTpGRIA--GGAVRFE 74
Cdd:PRK10762 1 MQALLQLKGIDKAFP----GVKALSGAALNVYPGRVMALVGENGAGKS----TMMKVLtgiytRDA-GSILylGKEVTFN 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 75 GTDLTQLQEkdmrryrgneLAMIFQEpmtsLN--PVLRI------GRQLEEPIMlhmGYSRKKAREHAIHTLRLVGIPRA 146
Cdd:PRK10762 72 GPKSSQEAG----------IGIIHQE----LNliPQLTIaeniflGREFVNRFG---RIDWKKMYAEADKLLARLNLRFS 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 147 eevvddyPHQLSG----GMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAE 222
Cdd:PRK10762 135 -------SDKLVGelsiGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELK-SQGRGIVYISHRLKEIFE 206
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1119351554 223 MCDRVVVMYAGRVVEEAPVKELFENpqhpytkGLIQSV--PKLRQKVRRLESIPGNV 277
Cdd:PRK10762 207 ICDDVTVFRDGQFIAEREVADLTED-------SLIEMMvgRKLEDQYPRLDKAPGEV 256
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-244 |
6.79e-17 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 81.37 E-value: 6.79e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLKDT--PgriAGGAVRFEGTDL 78
Cdd:PRK09700 1 MATPYISMAGIGKSF----GPVHALKSVNLTVYPGEIHALLGENGAGKS----TLMKVLSGIheP---TKGTITINNINY 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 79 TQLQEKDMRRyrgNELAMIFQEpMTSLNPV-----LRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLVGIPRA-EEVVDD 152
Cdd:PRK09700 70 NKLDHKLAAQ---LGIGIIYQE-LSVIDELtvlenLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDlDEKVAN 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 153 yphqLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmGMLLITHDLGVVAEMCDRVVVMYA 232
Cdd:PRK09700 146 ----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGT-AIVYISHKLAEIRRICDRYTVMKD 220
|
250
....*....|..
gi 1119351554 233 GRVVEEAPVKEL 244
Cdd:PRK09700 221 GSSVCSGMVSDV 232
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
6-236 |
7.10e-17 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 81.33 E-value: 7.10e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLktEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLKdtpG--RIAGGAVRFEGTDLTQLQE 83
Cdd:COG4618 331 LSVENL--TVVPPGSKRPILRGVSFSLEPGEVLGVIGPSGSGKS----TLARLLV---GvwPPTAGSVRLDGADLSQWDR 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 84 KDMRRYRGN-----EL--AMIFQepmtslNpvlrIGRqLEEPIMlhmgysrkkarEHAIHTLRLVGI-------PRA-EE 148
Cdd:COG4618 402 EELGRHIGYlpqdvELfdGTIAE------N----IAR-FGDADP-----------EKVVAAAKLAGVhemilrlPDGyDT 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 149 VVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEqemGM--LLITHDLGVVAEmCDR 226
Cdd:COG4618 460 RIGEGGARLSGGQRQRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKAR---GAtvVVITHRPSLLAA-VDK 535
|
250
....*....|
gi 1119351554 227 VVVMYAGRVV 236
Cdd:COG4618 536 LLVLRDGRVQ 545
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
5-237 |
1.02e-16 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 80.60 E-value: 1.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLkdtpgriAG--------GAVRFEGt 76
Cdd:NF040905 1 ILEMRGITKTF----PGVKALDDVNLSVREGEIHALCGENGAGKS----TLMKVL-------SGvyphgsyeGEILFDG- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 77 dltqlQEKDMRRYRGNE---LAMIFQEpmTSLNPVLRIGrqleEPIML-----HMGY-SRKKAREHAIHTLRLVGIprae 147
Cdd:NF040905 65 -----EVCRFKDIRDSEalgIVIIHQE--LALIPYLSIA----ENIFLgneraKRGViDWNETNRRARELLAKVGL---- 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 148 evvDDYPHQLSG----GMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEM 223
Cdd:NF040905 130 ---DESPDTLVTdigvGKQQLVEIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLELK-AQGITSIIISHKLNEIRRV 205
|
250
....*....|....
gi 1119351554 224 CDRVVVMYAGRVVE 237
Cdd:NF040905 206 ADSITVLRDGRTIE 219
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
5-238 |
1.23e-16 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 80.60 E-value: 1.23e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKtefRRDGGSVMAVSgvdFHINKGEVLGLVGESGCGKSVTSLSIMRLLKdtpgrIAGGAVRFEGTDLTQLQEK 84
Cdd:PRK09700 265 VFEVRNVT---SRDRKKVRDIS---FSVCRGEILGFAGLVGSGRTELMNCLFGVDK-----RAGGEIRLNGKDISPRSPL 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 85 DMRRyrgNELAMIFQE-------PMTSLNPVLRIGRQLEEP-IMLHMG-YSRKKAREHAIHTLRLVGIPRAEevVDDYPH 155
Cdd:PRK09700 334 DAVK---KGMAYITESrrdngffPNFSIAQNMAISRSLKDGgYKGAMGlFHEVDEQRTAENQRELLALKCHS--VNQNIT 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 156 QLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmGMLLITHDLGVVAEMCDRVVVMYAGRV 235
Cdd:PRK09700 409 ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGK-VILMVSSELPEIITVCDRIAVFCEGRL 487
|
...
gi 1119351554 236 VEE 238
Cdd:PRK09700 488 TQI 490
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
20-247 |
1.35e-16 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 77.61 E-value: 1.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLKDTPgRIAGGAVRFEGTDLTQLQEkdmrryrgnelAMIFQ 99
Cdd:PRK11614 16 GKIQALHEVSLHINQGEIVTLIGANGAGKT----TLLGTLCGDP-RATSGRIVFDGKDITDWQT-----------AKIMR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 100 EPMTSLNPVLRIGRQLEEPIMLHMG---YSRKKAREHAIHTLRLvgIPRAEEVVDDYPHQLSGGMRQRVMIAMAMSCSPK 176
Cdd:PRK11614 80 EAVAIVPEGRRVFSRMTVEENLAMGgffAERDQFQERIKWVYEL--FPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119351554 177 LLIADEPTTALDVTIQAQILDLMKRLKEEQeMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFEN 247
Cdd:PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQLREQG-MTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
27-235 |
1.85e-16 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 77.13 E-value: 1.85e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 27 GVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTpgriaGGAVRFEGTDLTQLQEKDMRRyrgnELAMIFQEPMTSln 106
Cdd:cd03248 32 DVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ-----GGQVLLDGKPISQYEHKYLHS----KVSLVGQEPVLF-- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 107 pvlriGRQLEEPIMLHMG--------YSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLL 178
Cdd:cd03248 101 -----ARSLQDNIAYGLQscsfecvkEAAQKAHAHSFISELASGY---DTEVGEKGSQLSGGQKQRVAIARALIRNPQVL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1119351554 179 IADEPTTALDVTIQAQILDLMKRLKEEQEmgMLLITHDLGVVaEMCDRVVVMYAGRV 235
Cdd:cd03248 173 ILDEATSALDAESEQQVQQALYDWPERRT--VLVIAHRLSTV-ERADQILVLDGGRI 226
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
15-258 |
2.50e-16 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 77.74 E-value: 2.50e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 15 FRRDGGSVMAVSGVDFHINKgeVLGLVGESGCGKSVTSLSIMRLLkdtpgRIAGGAVRFEGTDLtQLQEKDMRRYRgNEL 94
Cdd:PRK13638 9 FRYQDEPVLKGLNLDFSLSP--VTGLVGANGCGKSTLFMNLSGLL-----RPQKGAVLWQGKPL-DYSKRGLLALR-QQV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 95 AMIFQEPMTSLnpvlrigrqLEEPIMLHMGYSrkkarehaihtLRLVGIPRAE--EVVDD---------YPHQ----LSG 159
Cdd:PRK13638 80 ATVFQDPEQQI---------FYTDIDSDIAFS-----------LRNLGVPEAEitRRVDEaltlvdaqhFRHQpiqcLSH 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 160 GMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEA 239
Cdd:PRK13638 140 GQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIV-AQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218
|
250
....*....|....*....
gi 1119351554 240 PVKELFENPQHPYTKGLIQ 258
Cdd:PRK13638 219 APGEVFACTEAMEQAGLTQ 237
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
16-246 |
4.55e-16 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 77.95 E-value: 4.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 16 RRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavrfegtdlTQLQEKDMRRYRGNELA 95
Cdd:PRK13536 48 SKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI------------TVLGVPVPARARLARAR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 96 MIFQEPMTSLNPVLRIgrqlEEPIMLHMGYSRKKAREHAIHTLRLVGIPRAEEVVDDYPHQLSGGMRQRVMIAMAMSCSP 175
Cdd:PRK13536 116 IGVVPQFDNLDLEFTV----RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDP 191
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119351554 176 KLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFE 246
Cdd:PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLL-ARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
25-243 |
9.83e-16 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 77.74 E-value: 9.83e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 25 VSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLKDTPGRiAGGAVRFEGTDLTQLQEKDM-----------RRYRGNE 93
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRT----ELMKVLYGALPR-TSGYVTLDGHEVVTRSPQDGlangivyisedRKRDGLV 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 94 LAMIFQEPM--TSLNPVLRIGRQLeepimlhmgysrKKAREHAI--HTLRLVGI--PRAEEVVDDyphqLSGGMRQRVMI 167
Cdd:PRK10762 343 LGMSVKENMslTALRYFSRAGGSL------------KHADEQQAvsDFIRLFNIktPSMEQAIGL----LSGGNQQKVAI 406
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1119351554 168 AMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQeMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKE 243
Cdd:PRK10762 407 ARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEG-LSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
5-235 |
1.75e-15 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 75.05 E-value: 1.75e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLKTEFRRDggsvMAVSGVDFHINKGEVLGLVGESGCGKS--VTSLSIMRLLKDTPG---RIAGGAVRFEGTdlt 79
Cdd:PRK09984 4 IIRVEKLAKTFNQH----QALHAVDLNIHHGEMVALLGPSGSGKStlLRHLSGLITGDKSAGshiELLGRTVQREGR--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 80 qlQEKDMRRYRGnELAMIFQE-----PMTSLNPVLrIGRQLEEPIMLH-MGYSRKKAREHAIHTLRLVGIPRaeevvddY 153
Cdd:PRK09984 77 --LARDIRKSRA-NTGYIFQQfnlvnRLSVLENVL-IGALGSTPFWRTcFSWFTREQKQRALQALTRVGMVH-------F 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 154 PHQ----LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVV 229
Cdd:PRK09984 146 AHQrvstLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVA 225
|
....*.
gi 1119351554 230 MYAGRV 235
Cdd:PRK09984 226 LRQGHV 231
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
17-250 |
2.27e-15 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 74.86 E-value: 2.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 17 RDGGSVMavSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLK-DTPGRIAGGAVR------FEGTDLTQLQEKDMRRY 89
Cdd:PRK13547 11 RRHRAIL--RDLSLRIEPGRVTALLGRNGAGKS----TLLKALAgDLTGGGAPRGARvtgdvtLNGEPLAAIDAPRLARL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 90 RG-----NELAMIFqepmtSLNPVLRIGRQleePIMLHMGYSRKKAREHAIHTLRLVGiprAEEVVDDYPHQLSGGMRQR 164
Cdd:PRK13547 85 RAvlpqaAQPAFAF-----SAREIVLLGRY---PHARRAGALTHRDGEIAWQALALAG---ATALVGRDVTTLSGGELAR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 165 VMIAMAMS---------CSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRV 235
Cdd:PRK13547 154 VQFARVLAqlwpphdaaQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAI 233
|
250
....*....|....*
gi 1119351554 236 VEEAPVKELFEnPQH 250
Cdd:PRK13547 234 VAHGAPADVLT-PAH 247
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
27-238 |
2.93e-15 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 76.40 E-value: 2.93e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 27 GVDFHINKGEVLGLVGESGCGKSvtslSIMRLL---KDtpgrIAGGAVRFEGTDLTQLQEKDMRRYrgneLAMIFQEpmT 103
Cdd:COG5265 376 GVSFEVPAGKTVAIVGPSGAGKS----TLARLLfrfYD----VTSGRILIDGQDIRDVTQASLRAA----IGIVPQD--T 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 104 SL-NpvlrigrqleEPIMLHMGYSRKKAREHAI-HTLRLVGIpraEEVVDDYPHQ-----------LSGGMRQRVMIAMA 170
Cdd:COG5265 442 VLfN----------DTIAYNIAYGRPDASEEEVeAAARAAQI---HDFIESLPDGydtrvgerglkLSGGEKQRVAIART 508
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 171 MSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmgMLLITHDLGVVAEmCDRVVVMYAGRVVEE 238
Cdd:COG5265 509 LLKNPPILIFDEATSALDSRTERAIQAALREVARGRT--TLVIAHRLSTIVD-ADEILVLEAGRIVER 573
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
27-259 |
5.03e-15 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 76.17 E-value: 5.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 27 GVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAggavrFEGTDLTQLQEKDMRRYrgneLAMIFQEPMTSLN 106
Cdd:PLN03232 1254 GLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIM-----IDDCDVAKFGLTDLRRV----LSIIPQSPVLFSG 1324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 107 PVlrigRQLEEPIMLHMGYSRKKAREHAihtlrlvgipRAEEVVDDYPHQL-----------SGGMRQRVMIAMAMSCSP 175
Cdd:PLN03232 1325 TV----RFNIDPFSEHNDADLWEALERA----------HIKDVIDRNPFGLdaevseggenfSVGQRQLLSLARALLRRS 1390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 176 KLLIADEPTTALDVTIQAQIldlMKRLKEE-QEMGMLLITHDLGVVAEmCDRVVVMYAGRVVEEAPVKELFENPQHPYTK 254
Cdd:PLN03232 1391 KILVLDEATASVDVRTDSLI---QRTIREEfKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRDTSAFFR 1466
|
....*
gi 1119351554 255 gLIQS 259
Cdd:PLN03232 1467 -MVHS 1470
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-246 |
9.59e-15 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 73.69 E-value: 9.59e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLsiMRLLKDTPgriAGGAVRFEGTDLTQ 80
Cdd:PRK13537 3 MSVAPIDFRNVEKRY----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLR--MLLGLTHP---DAGSISLCGEPVPS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 81 LQEKDMRRyrgneLAMIFQ----EPMTSLNPVLRI-GRqleepimlHMGYSRKKAREHAIHTLRLVgipRAEEVVDDYPH 155
Cdd:PRK13537 74 RARHARQR-----VGVVPQfdnlDPDFTVRENLLVfGR--------YFGLSAAAARALVPPLLEFA---KLENKADAKVG 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 156 QLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVtiQAQILdLMKRLKEEQEMG--MLLITHDLGVVAEMCDRVVVMYAG 233
Cdd:PRK13537 138 ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDP--QARHL-MWERLRSLLARGktILLTTHFMEEAERLCDRLCVIEEG 214
|
250
....*....|...
gi 1119351554 234 RVVEEAPVKELFE 246
Cdd:PRK13537 215 RKIAEGAPHALIE 227
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
28-244 |
1.27e-14 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 74.50 E-value: 1.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 28 VDFHINKGEVLGLVGESGCGKsvTSLsIMRLLKDTPGRiagGAVRFEGTDLTQLQEKDMRRYrgneLAMIFQEPMTsLNP 107
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGK--TSL-LNALLGFLPYQ---GSLKINGIELRELDPESWRKH----LSWVGQNPQL-PHG 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 108 VLRigrqleEPIMLhmgySRKKAREHAIHTLrlvgIPRAE--EVVDDYPH-----------QLSGGMRQRVMIAMAMSCS 174
Cdd:PRK11174 438 TLR------DNVLL----GNPDASDEQLQQA----LENAWvsEFLPLLPQgldtpigdqaaGLSVGQAQRLALARALLQP 503
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 175 PKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmgMLLITHDLGVVAEMcDRVVVMYAGRVVEEAPVKEL 244
Cdd:PRK11174 504 CQLLLLDEPTASLDAHSEQLVMQALNAASRRQT--TLMVTHQLEDLAQW-DQIWVMQDGQIVQQGDYAEL 570
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
5-260 |
1.39e-14 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 74.48 E-value: 1.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLktEFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLkdTPGRIA-GGAVRFEGTDLTQLQE 83
Cdd:PRK11160 338 SLTLNNV--SFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKS----TLLQLL--TRAWDPqQGEILLNGQPIADYSE 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 84 KDMRRyrgnelAMIF--QEPMTsLNPVLRIGRQLEEPimlhmgysrKKAREHAIHTLRLVGIpraEEVVDDYP------- 154
Cdd:PRK11160 410 AALRQ------AISVvsQRVHL-FSATLRDNLLLAAP---------NASDEALIEVLQQVGL---EKLLEDDKglnawlg 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 155 ---HQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMkrLKEEQEMGMLLITHDLGVVAEMcDRVVVMY 231
Cdd:PRK11160 471 eggRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL--AEHAQNKTVLMITHRLTGLEQF-DRICVMD 547
|
250 260
....*....|....*....|....*....
gi 1119351554 232 AGRVVEEAPVKELFEnpQHPYTKGLIQSV 260
Cdd:PRK11160 548 NGQIIEQGTHQELLA--QQGRYYQLKQRL 574
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
6-230 |
2.08e-14 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 69.40 E-value: 2.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLktEFRRDGGSVMavSGVDFHINKGEVLGLVGESGCGKSvTSLSImrllkdtpgrIAGGAVRFEGTDltqlqekd 85
Cdd:cd03221 1 IELENL--SKTYGGKLLL--KDISLTINPGDRIGLVGRNGAGKS-TLLKL----------IAGELEPDEGIV-------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 mrryrgnelamifqepmtSLNPVLRIGrqleepimlhmgysrkkarehaihtlrlvgipraeevvddYPHQLSGGMRQRV 165
Cdd:cd03221 58 ------------------TWGSTVKIG----------------------------------------YFEQLSGGEKMRL 79
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119351554 166 MIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEeqemGMLLITHDLGVVAEMCDRVVVM 230
Cdd:cd03221 80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPG----TVILVSHDRYFLDQVATKIIEL 140
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
25-236 |
2.33e-14 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 70.66 E-value: 2.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 25 VSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLKdtpGRIAG----GAVRFEGTDLtqlqekDMRRYRGnELAMIFQE 100
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKS----TLLNALA---GRRTGlgvsGEVLINGRPL------DKRSFRK-IIGYVPQD 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 101 PMtsLNPVLRIgrqleepimlhmgysrkkaREHAIHTLRLVGIpraeevvddyphqlSGGMRQRVMIAMAMSCSPKLLIA 180
Cdd:cd03213 91 DI--LHPTLTV-------------------RETLMFAAKLRGL--------------SGGERKRVSIALELVSNPSLLFL 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1119351554 181 DEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVV 236
Cdd:cd03213 136 DEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
6-236 |
2.37e-14 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 71.15 E-value: 2.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKteFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDtpGRIAGGAVRFEGTDLTQLQEKD 85
Cdd:cd03234 6 WWDVGLK--AKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEG--GGTTSGQILFNGQPRKPDQFQK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRY-RGNElamIFQEPMT-----SLNPVLRIGRqleepimlHMGYSRKKAREhAIHTLRLVGIPRaeeVVDDYPHQLSG 159
Cdd:cd03234 82 CVAYvRQDD---ILLPGLTvretlTYTAILRLPR--------KSSDAIRKKRV-EDVLLRDLALTR---IGGNLVKGISG 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 160 GMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmGMLLITHDLGV-VAEMCDRVVVMYAGRVV 236
Cdd:cd03234 147 GERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR-IVILTIHQPRSdLFRLFDRILLLSSGEIV 223
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
25-235 |
2.54e-14 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 73.54 E-value: 2.54e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 25 VSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLKdtpGRI--AGGAVRFEGTDLTQLQekdmRRYRGNELAMIFQE-- 100
Cdd:TIGR01842 334 LRGISFSLQAGEALAIIGPSGSGKS----TLARLIV---GIWppTSGSVRLDGADLKQWD----RETFGKHIGYLPQDve 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 101 --PMTSLNPVLRIGRQLE-EPIMlhmgysrKKAREHAIHTLRLvGIPRA-EEVVDDYPHQLSGGMRQRVMIAMAMSCSPK 176
Cdd:TIGR01842 403 lfPGTVAENIARFGENADpEKII-------EAAKLAGVHELIL-RLPDGyDTVIGPGGATLSGGQRQRIALARALYGDPK 474
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1119351554 177 LLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVaEMCDRVVVMYAGRV 235
Cdd:TIGR01842 475 LVVLDEPNSNLDEEGEQALANAIKALK-ARGITVVVITHRPSLL-GCVDKILVLQDGRI 531
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
20-230 |
3.53e-14 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 69.96 E-value: 3.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavrfegtdltqlqekdmRRYRGNELAMIFQ 99
Cdd:NF040873 3 GGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTV--------------------RRAGGARVAYVPQ 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 100 EpmTSLNPVLRIgrQLEEPIML----HMGYSR---KKAREHAIHTLRLVGIPR-AEEVVDDyphqLSGGMRQRVMIAMAM 171
Cdd:NF040873 63 R--SEVPDSLPL--TVRDLVAMgrwaRRGLWRrltRDDRAAVDDALERVGLADlAGRQLGE----LSGGQRQRALLAQGL 134
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1119351554 172 SCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQeMGMLLITHDLGVVAEMcDRVVVM 230
Cdd:NF040873 135 AQEADLLLLDEPTTGLDAESRERIIALLAEEHARG-ATVVVVTHDLELVRRA-DPCVLL 191
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
28-230 |
6.45e-14 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 70.13 E-value: 6.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 28 VDFHINKGEVLGLVGESGCGKSvTSLSIM-RLLKDTPGRIAggavrFEGTDLTQLQEKdmrRYRgNELAMIFQEPMTSLN 106
Cdd:PRK10247 26 ISFSLRAGEFKLITGPSGCGKS-TLLKIVaSLISPTSGTLL-----FEGEDISTLKPE---IYR-QQVSYCAQTPTLFGD 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 107 PVLRigrQLEEPIMLhmgysRKKA--REHAIHTLRLVGIPraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPT 184
Cdd:PRK10247 96 TVYD---NLIFPWQI-----RNQQpdPAIFLDDLERFALP--DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEIT 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1119351554 185 TALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEmCDRVVVM 230
Cdd:PRK10247 166 SALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH-ADKVITL 210
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
139-252 |
9.19e-14 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 71.06 E-value: 9.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 139 RLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLG 218
Cdd:PRK11144 114 ALLGI---EPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD 190
|
90 100 110
....*....|....*....|....*....|....*
gi 1119351554 219 VVAEMCDRVVVMYAGRVVEEAPVKELFENPQ-HPY 252
Cdd:PRK11144 191 EILRLADRVVVLEQGKVKAFGPLEEVWASSAmRPW 225
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
30-236 |
1.54e-13 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 69.19 E-value: 1.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 30 FHINKGEVLGLVGESGCGKSvTSLSIMRLLkdTPGriaGGAVRFEGTDLTQLQEKDMRRYRGnELAMifQEPMTSLNPVL 109
Cdd:PRK03695 17 AEVRAGEILHLVGPNGAGKS-TLLARMAGL--LPG---SGSIQFAGQPLEAWSAAELARHRA-YLSQ--QQTPPFAMPVF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 110 RIgrqleepIMLHMGYS-RKKAREHAIHTL-RLVGIpraeevvDDYPH----QLSGGMRQRVMIAMAM-----SCSP--K 176
Cdd:PRK03695 88 QY-------LTLHQPDKtRTEAVASALNEVaEALGL-------DDKLGrsvnQLSGGEWQRVRLAAVVlqvwpDINPagQ 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 177 LLIADEPTTALDVTiQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVV 236
Cdd:PRK03695 154 LLLLDEPMNSLDVA-QQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLL 212
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
27-259 |
1.62e-13 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 71.69 E-value: 1.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 27 GVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAggavrFEGTDLTQLQEKDMRryrgNELAMIFQepmtslN 106
Cdd:PLN03130 1257 GLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRIL-----IDGCDISKFGLMDLR----KVLGIIPQ------A 1321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 107 PVLRIG--RQLEEPIMLHMGYSRKKAREHAiHtLRLVgIPR------AEevVDDYPHQLSGGMRQRVMIAMAMSCSPKLL 178
Cdd:PLN03130 1322 PVLFSGtvRFNLDPFNEHNDADLWESLERA-H-LKDV-IRRnslgldAE--VSEAGENFSVGQRQLLSLARALLRRSKIL 1396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 179 IADEPTTALDVTIQAQIldlMKRLKEE-QEMGMLLITHDLGVVAEmCDRVVVMYAGRVVEEAPVKELFENPQHPYTKgLI 257
Cdd:PLN03130 1397 VLDEATAAVDVRTDALI---QKTIREEfKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSNEGSAFSK-MV 1471
|
..
gi 1119351554 258 QS 259
Cdd:PLN03130 1472 QS 1473
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
7-235 |
1.71e-13 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 71.31 E-value: 1.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 7 EVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTslsiMR----LLKDTPG--RIAGGAVrfEGTDLtq 80
Cdd:NF033858 268 EARGLTMRF----GDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTT----MKmltgLLPASEGeaWLFGQPV--DAGDI-- 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 81 lqekDMRRyrgnelamifqepmtslnpvlRIGrqleepimlHMG-----YSRKKARE----HAihtlRLVGIPRAE---- 147
Cdd:NF033858 336 ----ATRR---------------------RVG---------YMSqafslYGELTVRQnlelHA----RLFHLPAAEiaar 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 148 -----------EVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHD 216
Cdd:NF033858 378 vaemlerfdlaDVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLLIELSREDGVTIFISTHF 457
|
250
....*....|....*....
gi 1119351554 217 LGvVAEMCDRVVVMYAGRV 235
Cdd:NF033858 458 MN-EAERCDRISLMHAGRV 475
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
16-265 |
3.71e-13 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 70.52 E-value: 3.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 16 RRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSVtslsimrLLKDTPGRIAG------GAVRFEGTDltqlQEKDMRRY 89
Cdd:TIGR00956 68 FRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCST-------LLKTIASNTDGfhigveGVITYDGIT----PEEIKKHY 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 90 RGnELAMIFQepmTSLN-PVLRIGRQLEEPIMLH------MGYSRKKAREHAIH-TLRLVG--IPRAEEVVDDYPHQLSG 159
Cdd:TIGR00956 137 RG-DVVYNAE---TDVHfPHLTVGETLDFAARCKtpqnrpDGVSREEYAKHIADvYMATYGlsHTRNTKVGNDFVRGVSG 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 160 GMRQRVMIAMAMSCSPKLLIADEPTTALDvtiQAQILDLMKRLKEeqemgMLLITHDLGVVA---------EMCDRVVVM 230
Cdd:TIGR00956 213 GERKRVSIAEASLGGAKIQCWDNATRGLD---SATALEFIRALKT-----SANILDTTPLVAiyqcsqdayELFDKVIVL 284
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1119351554 231 YAGRVVEEAP---VKELFEN-----PQHPYTKGLIQSV--PKLRQ 265
Cdd:TIGR00956 285 YEGYQIYFGPadkAKQYFEKmgfkcPDRQTTADFLTSLtsPAERQ 329
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
6-244 |
7.62e-13 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 68.61 E-value: 7.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDT---PGRIAGGAVRFEGTDLTQLQ 82
Cdd:NF000106 14 VEVRGLVKHF----GEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*GPDAgrrPWRF*TWCANRRALRRTIG* 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 83 EKDMRRYRgnelamifQEPMTSLNPVLRIGRQLEepimlhmgYSRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMR 162
Cdd:NF000106 90 HRPVR*GR--------RESFSGRENLYMIGR*LD--------LSRKDARARADELLERFSL---TEAAGRAAAKYSGGMR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 163 QRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMgMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVK 242
Cdd:NF000106 151 RRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGAT-VLLTTQYMEEAEQLAHELTVIDRGRVIADGKVD 229
|
..
gi 1119351554 243 EL 244
Cdd:NF000106 230 EL 231
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
14-248 |
9.37e-13 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 68.97 E-value: 9.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 14 EFRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLKDtpgrIAGGAVRFEGTDLTQLQEKDMRRyrgnE 93
Cdd:PRK10789 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKS-TLLSLIQRHFD----VSEGDIRFHDIPLTKLQLDSWRS----R 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 94 LAMIFQEPMTSLNPV---LRIGR------QLEEpimlhmgysrkKAREHAIH--TLRLvgiPRAEEV-VDDYPHQLSGGM 161
Cdd:PRK10789 391 LAVVSQTPFLFSDTVannIALGRpdatqqEIEH-----------VARLASVHddILRL---PQGYDTeVGERGVMLSGGQ 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 162 RQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILdlmKRLKEEQEMGMLLIT-HDLGVVAEmCDRVVVMYAGRVVEEAP 240
Cdd:PRK10789 457 KQRISIARALLLNAEILILDDALSAVDGRTEHQIL---HNLRQWGEGRTVIISaHRLSALTE-ASEILVMQHGHIAQRGN 532
|
....*...
gi 1119351554 241 VKELFENP 248
Cdd:PRK10789 533 HDQLAQQS 540
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
6-220 |
1.00e-12 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 65.84 E-value: 1.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEfrRDGgsVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLKdtpG--RIAGGAVRFEGTDLTQLQE 83
Cdd:TIGR01189 1 LAARNLACS--RGE--RMLFEGLSFTLNAGEALQVTGPNGIGKT----TLLRILA---GllRPDSGEVRWNGTPLAEQRD 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 84 KdmrryRGNELAMIFQEPmtSLNPVLRIGRQLEEPIMLHMGYSRkkarehAIHT-LRLVGIPRAEevvdDYP-HQLSGGM 161
Cdd:TIGR01189 70 E-----PHENILYLGHLP--GLKPELSALENLHFWAAIHGGAQR------TIEDaLAAVGLTGFE----DLPaAQLSAGQ 132
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 162 RQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMkRLKEEQEMGMLLITH-DLGVV 220
Cdd:TIGR01189 133 QRRLALARLWLSRRPLWILDEPTTALDKAGVALLAGLL-RAHLARGGIVLLTTHqDLGLV 191
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
2-250 |
1.19e-12 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 67.10 E-value: 1.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 2 TSKLLEVQGLKteFRRdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLKdtpGRIA--GGAVRFEGTDLT 79
Cdd:PRK11831 4 VANLVDMRGVS--FTR--GNRCIFDNISLTVPRGKITAIMGPSGIGKT----TLLRLIG---GQIApdHGEILFDGENIP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 80 QLQEKDMRRYRgNELAMIFQEP--MTSLNPV------LRIGRQLEEPIMlhmgysrkkaREHAIHTLRLVGIPRAEEVVd 151
Cdd:PRK11831 73 AMSRSRLYTVR-KRMSMLFQSGalFTDMNVFdnvaypLREHTQLPAPLL----------HSTVMMKLEAVGLRGAAKLM- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 152 dyPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMY 231
Cdd:PRK11831 141 --PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVA 218
|
250
....*....|....*....
gi 1119351554 232 AGRVVEEAPVKELFENPQH 250
Cdd:PRK11831 219 DKKIVAHGSAQALQANPDP 237
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
26-228 |
1.33e-12 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 68.17 E-value: 1.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 26 SGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLKdtpGRIA--GGAVRFEgtdltqlqekdmrryRGNELAMIFQEP-- 101
Cdd:COG0488 15 DDVSLSINPGDRIGLVGRNGAGKS----TLLKILA---GELEpdSGEVSIP---------------KGLRIGYLPQEPpl 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 102 ----------MTSLNPVLRIGRQLEEpIMLHMGYSRKKAREHAIHTLRLVGI------PRAEEV-----VDDYPHQ---- 156
Cdd:COG0488 73 dddltvldtvLDGDAELRALEAELEE-LEAKLAEPDEDLERLAELQEEFEALggweaeARAEEIlsglgFPEEDLDrpvs 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 157 -LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDvtIQAqILDLMKRLKEEqEMGMLLITHDLGVVAEMCDRVV 228
Cdd:COG0488 152 eLSGGWRRRVALARALLSEPDLLLLDEPTNHLD--LES-IEWLEEFLKNY-PGTVLVVSHDRYFLDRVATRIL 220
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
15-238 |
2.65e-12 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 64.26 E-value: 2.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 15 FRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLS-IMRLLKDTPGRIAggavrFEGTDLTQLqEKDMRRYrgne 93
Cdd:cd03247 8 FSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKS-TLLQlLTGDLKPQQGEIT-----LDGVPVSDL-EKALSSL---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 94 LAMIFQEPMTsLNPVLR--IGRQLeepimlhmgysrkkarehaihtlrlvgipraeevvddyphqlSGGMRQRVMIAMAM 171
Cdd:cd03247 77 ISVLNQRPYL-FDTTLRnnLGRRF------------------------------------------SGGERQRLALARIL 113
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119351554 172 SCSPKLLIADEPTTALDVTIQAQILDLMkrLKEEQEMGMLLITHDLGVVAEMcDRVVVMYAGRVVEE 238
Cdd:cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLI--FEVLKDKTLIWITHHLTGIEHM-DKILFLENGKIIMQ 177
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
25-251 |
3.24e-12 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 67.38 E-value: 3.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 25 VSGvdfHINKGEVLGLVGESGCGKSvTSLSIM--RLLKDTPGriaGGAVRFEGTDLTQlqeKDMRRYRgnelAMIFQEPM 102
Cdd:TIGR00955 44 VSG---VAKPGELLAVMGSSGAGKT-TLMNALafRSPKGVKG---SGSVLLNGMPIDA---KEMRAIS----AYVQQDDL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 103 tsLNPVLRIGRQLEEPIMLHMG--YSRKKAREHAIHTLRLVGIPRAEEVVDDYPHQ---LSGGMRQRVMIAMAMSCSPKL 177
Cdd:TIGR00955 110 --FIPTLTVREHLMFQAHLRMPrrVTKKEKRERVDEVLQALGLRKCANTRIGVPGRvkgLSGGERKRLAFASELLTDPPL 187
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119351554 178 LIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKEL---FENPQHP 251
Cdd:TIGR00955 188 LFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAvpfFSDLGHP 264
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
25-249 |
4.62e-12 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 64.91 E-value: 4.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 25 VSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAggaVRFEGTDLTQLQEKDMRR--YRGNElAMIFQE-- 100
Cdd:PRK10895 19 VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII---IDDEDISLLPLHARARRGigYLPQE-ASIFRRls 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 101 PMTSLNPVLRIGRQLeepimlhmgySRKKAREHAIHTLRLVGIpraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIA 180
Cdd:PRK10895 95 VYDNLMAVLQIRDDL----------SAEQREDRANELMEEFHI---EHLRDSMGQSLSGGERRRVEIARALAANPKFILL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1119351554 181 DEPTTALDVTIQAQILDLMKRLKEEQeMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKELFENPQ 249
Cdd:PRK10895 162 DEPFAGVDPISVIDIKRIIEHLRDSG-LGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEH 229
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
20-228 |
5.11e-12 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 64.75 E-value: 5.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavrfegtdltqlqekdmRRYRGNELAMIFQ 99
Cdd:PRK09544 15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI--------------------KRNGKLRIGYVPQ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 100 EpmTSLNPVLRIgrQLEEPIMLHMGYSRKK-----AREHAIHTLrlvgipraeevvdDYPHQ-LSGGMRQRVMIAMAMSC 173
Cdd:PRK09544 75 K--LYLDTTLPL--TVNRFLRLRPGTKKEDilpalKRVQAGHLI-------------DAPMQkLSGGETQRVLLARALLN 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1119351554 174 SPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVV 228
Cdd:PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVL 192
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
15-246 |
6.10e-12 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 66.20 E-value: 6.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 15 FRRDGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMRLLKDtpgrIAGGAVRFEGTDLTQLQEKDMRryrgNEL 94
Cdd:PRK11176 349 FTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKS-TIANLLTRFYD----IDEGEILLDGHDLRDYTLASLR----NQV 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 95 AMIFQepmtslNPVLrigrqLEEPIMLHMGYSRKK--AREHAIHTLRLVgipRAEEVVDDYPH-----------QLSGGM 161
Cdd:PRK11176 420 ALVSQ------NVHL-----FNDTIANNIAYARTEqySREQIEEAARMA---YAMDFINKMDNgldtvigengvLLSGGQ 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 162 RQRVMIAMAMSCSPKLLIADEPTTALDV----TIQAQILDLMKrlkeeqEMGMLLITHDLGVVaEMCDRVVVMYAGRVVE 237
Cdd:PRK11176 486 RQRIAIARALLRDSPILILDEATSALDTeserAIQAALDELQK------NRTSLVIAHRLSTI-EKADEILVVEDGEIVE 558
|
....*....
gi 1119351554 238 EAPVKELFE 246
Cdd:PRK11176 559 RGTHAELLA 567
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
6-249 |
1.90e-11 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 65.19 E-value: 1.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFRRdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKdtpgrIAGGAVRFEGTDLTQLQEKD 85
Cdd:PTZ00243 1309 LVFEGVQMRYRE--GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE-----VCGGEIRVNGREIGAYGLRE 1381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRyrgnELAMIFQEPMTSLNPVlrigRQLEEPIMlhmgysrKKAREHAIHTLRLVG----IPRAEEVVDDypHQLSGGM 161
Cdd:PTZ00243 1382 LRR----QFSMIPQDPVLFDGTV----RQNVDPFL-------EASSAEVWAALELVGlrerVASESEGIDS--RVLEGGS 1444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 162 R----QRVMIAMAMSCSPK---LLIADEPTT----ALDVTIQAQILDLMKRLKeeqemgMLLITHDLGVVAEmCDRVVVM 230
Cdd:PTZ00243 1445 NysvgQRQLMCMARALLKKgsgFILMDEATAnidpALDRQIQATVMSAFSAYT------VITIAHRLHTVAQ-YDKIIVM 1517
|
250
....*....|....*....
gi 1119351554 231 YAGRVVEEAPVKELFENPQ 249
Cdd:PTZ00243 1518 DHGAVAEMGSPRELVMNRQ 1536
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-237 |
8.09e-11 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 61.58 E-value: 8.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSlsimRLLKDTPG-RIAGGAVRFEGTDLT 79
Cdd:CHL00131 3 KNKPILEIKNLHASV----NENEILKGLNLSINKGEIHAIMGPNGSGKSTLS----KVIAGHPAyKILEGDILFKGESIL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 80 QLqEKDMRRYRGNELAmiFQepmtslNPVLRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLVGIPRAE-EVVDDYPHQL- 157
Cdd:CHL00131 75 DL-EPEERAHLGIFLA--FQ------YPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKlKLVGMDPSFLs 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 158 -------SGGMRQRVMI-AMAMScSPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHD---LGVVAEmcDR 226
Cdd:CHL00131 146 rnvnegfSGGEKKRNEIlQMALL-DSELAILDETDSGLDIDALKIIAEGINKLM-TSENSIILITHYqrlLDYIKP--DY 221
|
250
....*....|.
gi 1119351554 227 VVVMYAGRVVE 237
Cdd:CHL00131 222 VHVMQNGKIIK 232
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
6-220 |
8.74e-11 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 60.58 E-value: 8.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEfrRDGGSVMavSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLKDTpGRIAGGAVRFEGTDLTQLQEKD 85
Cdd:cd03231 1 LEADELTCE--RDGRALF--SGLSFTLAAGEALQVTGPNGSGKT----TLLRILAGL-SPPLAGRVLLNGGPLDFQRDSI 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRR--YRGNELAMifqepMTSLNPvlrigrqLEEPIMLHMGYSRKKArEHAIHTLRLVGipraeevVDDYP-HQLSGGMR 162
Cdd:cd03231 72 ARGllYLGHAPGI-----KTTLSV-------LENLRFWHADHSDEQV-EEALARVGLNG-------FEDRPvAQLSAGQQ 131
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 163 QRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVV 220
Cdd:cd03231 132 RRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLS 189
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-237 |
1.05e-10 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 62.39 E-value: 1.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 4 KLLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLKdtpGRIA--GGAVRFeGTDL--- 78
Cdd:COG0488 314 KVLELEGLSKSY----GDKTLLDDLSLRIDRGDRIGLIGPNGAGKS----TLLKLLA---GELEpdSGTVKL-GETVkig 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 79 --TQLQEkdmrryrgnelamifqepmtSLNPvlrigrqlEEPIMLHM-GYSRKKAREHAIHTLRLVGIPRAEevVDDYPH 155
Cdd:COG0488 382 yfDQHQE--------------------ELDP--------DKTVLDELrDGAPGGTEQEVRGYLGRFLFSGDD--AFKPVG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 156 QLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDV-TIQAqILDLMKRLKeeqemG-MLLITHDLGVVAEMCDRVVVMYAG 233
Cdd:COG0488 432 VLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIeTLEA-LEEALDDFP-----GtVLLVSHDRYFLDRVATRILEFEDG 505
|
....
gi 1119351554 234 RVVE 237
Cdd:COG0488 506 GVRE 509
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
25-236 |
1.05e-10 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 60.35 E-value: 1.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 25 VSGVDFHINKGEVLGLVGESGCGKSvtslsimRLLKDTPGRIAG-----GAVRFEGTDLtqlqEKDMRRYRGnELAMIFQ 99
Cdd:cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCS-------TLLKALANRTEGnvsveGDIHYNGIPY----KEFAEKYPG-EIIYVSE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 100 EpmTSLNPVLRIGRQLEepimlhmgysrkkarehaiHTLRLVGipraeevvDDYPHQLSGGMRQRVMIAMAMSCSPKLLI 179
Cdd:cd03233 91 E--DVHFPTLTVRETLD-------------------FALRCKG--------NEFVRGISGGERKRVSIAEALVSRASVLC 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1119351554 180 ADEPTTALDVTIqaqILDLMKRLKEeqemgmllITHDLGVVA------------EMCDRVVVMYAGRVV 236
Cdd:cd03233 142 WDNSTRGLDSST---ALEILKCIRT--------MADVLKTTTfvslyqasdeiyDLFDKVLVLYEGRQI 199
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
156-244 |
1.24e-10 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 62.25 E-value: 1.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 156 QLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEMCDRVVVMYAGRV 235
Cdd:PRK13549 405 RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLV-QQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
....*....
gi 1119351554 236 VEEAPVKEL 244
Cdd:PRK13549 484 KGDLINHNL 492
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
22-237 |
2.29e-10 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 61.47 E-value: 2.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 22 VMAVSGVDFHINKGEVLGLVGESGCGKSVtslsimrLLKDTPG---------RIAGGAVRFEGTdltqlqekdmRRYRGN 92
Cdd:PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKST-------LLKILSGnyqpdagsiLIDGQEMRFAST----------TAALAA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 93 ELAMIFQEpmTSLNPVLRIGrqleEPIML-----HMGY-SRKKAREHAIHTLRLVGipraeevVDDYPHQ----LSGGMR 162
Cdd:PRK11288 80 GVAIIYQE--LHLVPEMTVA----ENLYLgqlphKGGIvNRRLLNYEAREQLEHLG-------VDIDPDTplkyLSIGQR 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119351554 163 QRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMgMLLITHDLGVVAEMCDRVVVMYAGRVVE 237
Cdd:PRK11288 147 QMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRV-ILYVSHRMEEIFALCDAITVFKDGRYVA 220
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
6-215 |
3.19e-10 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 60.98 E-value: 3.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLktEFRRDGGSVMaVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLlkdtpgrIAG----GavrfEGTdltql 81
Cdd:COG4178 363 LALEDL--TLRTPDGRPL-LEDLSLSLKPGERLLITGPSGSGKS----TLLRA-------IAGlwpyG----SGR----- 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 82 qekdMRRYRGNELAMIFQEPMTslnPV--LRigRQLEEPiMLHMGYSRKKAREhaihTLRLVG----IPRAEEVvDDYPH 155
Cdd:COG4178 420 ----IARPAGARVLFLPQRPYL---PLgtLR--EALLYP-ATAEAFSDAELRE----ALEAVGlghlAERLDEE-ADWDQ 484
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1119351554 156 QLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQildLMKRLKEE-QEMGMLLITH 215
Cdd:COG4178 485 VLSLGEQQRLAFARLLLHKPDWLFLDEATSALDEENEAA---LYQLLREElPGTTVISVGH 542
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
25-234 |
3.44e-10 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 61.05 E-value: 3.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 25 VSGVDFHINKGEVLGLVGESGCGKSVtslsimrLLKDTPGRIAGGAvrFEGTDLT---QLQEKDMRRyrgneLAMIFQEP 101
Cdd:PLN03211 84 LNGVTGMASPGEILAVLGPSGSGKST-------LLNALAGRIQGNN--FTGTILAnnrKPTKQILKR-----TGFVTQDD 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 102 MtsLNPVLRIGRQLEEPIMLHMGYSRKK-----AREHAIHTLrlvGIPRAEEVV--DDYPHQLSGGMRQRVMIAMAMSCS 174
Cdd:PLN03211 150 I--LYPHLTVRETLVFCSLLRLPKSLTKqekilVAESVISEL---GLTKCENTIigNSFIRGISGGERKRVSIAHEMLIN 224
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 175 PKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGR 234
Cdd:PLN03211 225 PSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGR 284
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
18-229 |
6.98e-10 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 58.57 E-value: 6.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 18 DGGSVMAVSGVDFhiNKGEVLGLVGESGCGKSvtslSIMRLLKdtpGRIA--GGAVRFEGTDLTQLQEKDMRRYRGNELA 95
Cdd:cd03237 10 LGEFTLEVEGGSI--SESEVIGILGPNGIGKT----TFIKMLA---GVLKpdEGDIEIELDTVSYKPQYIKADYEGTVRD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 96 MIFqepmtSLNPVLRIGRQLEEPIMlhmgysrkkarehaiHTLRLvgipraEEVVDDYPHQLSGGMRQRVMIAMAMSCSP 175
Cdd:cd03237 81 LLS-----SITKDFYTHPYFKTEIA---------------KPLQI------EQILDREVPELSGGELQRVAIAACLSKDA 134
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1119351554 176 KLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVV 229
Cdd:cd03237 135 DIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIV 188
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
29-236 |
7.74e-10 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 59.96 E-value: 7.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 29 DFHINKGEVLGLVGESGCGKSV-------------------TSLSIMRLLKDTPGRIAGGAVRFEGTDLTQLQEKdMRRY 89
Cdd:PRK11147 23 ELHIEDNERVCLVGRNGAGKSTlmkilngevllddgriiyeQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEY-LKRY 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 90 RgNELAMIFQEPMTS-LNPVLRIGRQLEepimlHMGYSRKKAREHaiHTLRLVGIPRAEEVVDdyphqLSGGMRQRVMIA 168
Cdd:PRK11147 102 H-DISHLVETDPSEKnLNELAKLQEQLD-----HHNLWQLENRIN--EVLAQLGLDPDAALSS-----LSGGWLRKAALG 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1119351554 169 MAMSCSPKLLIADEPTTALDV-TIQAqildLMKRLKEEQEmGMLLITHDLGVVAEMCDRVVVMYAGRVV 236
Cdd:PRK11147 169 RALVSNPDVLLLDEPTNHLDIeTIEW----LEGFLKTFQG-SIIFISHDRSFIRNMATRIVDLDRGKLV 232
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
24-237 |
1.01e-09 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 58.29 E-value: 1.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 24 AVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAggavrfegtdltqlqekdmrryRGNELAMIFQEpmT 103
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD----------------------RNGEVSVIAIS--A 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 104 SLNPVLrIGRQLEEPIMLHMGYSRKKAREHaihTLRLVGIPRAEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEP 183
Cdd:PRK13546 95 GLSGQL-TGIENIEFKMLCMGFKRKEIKAM---TPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEA 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1119351554 184 TTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVE 237
Cdd:PRK13546 171 LSVGDQTFAQKCLDKIYEFK-EQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
157-243 |
1.12e-09 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 59.42 E-value: 1.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 157 LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVV 236
Cdd:NF040905 405 LSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELA-AEGKGVIVISSELPELLGMCDRIYVMNEGRIT 483
|
....*..
gi 1119351554 237 EEAPVKE 243
Cdd:NF040905 484 GELPREE 490
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
28-240 |
1.64e-09 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 58.77 E-value: 1.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 28 VDFHINKGEVLGLVGESGCGKSvtslSIMRLLKDTPgRIAGGAVRFEGTDLTQLQEKDM-----------RRYRGnelam 96
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRS----ELMKLLYGAT-RRTAGQVYLDGKPIDIRSPRDAiragimlcpedRKAEG----- 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 97 IFqePMTSLNPVLRI---GRQLEEPIMLHMGYSRKKAREHaIHTLRlVGIPRAEEVVddypHQLSGGMRQRVMIAMAMSC 173
Cdd:PRK11288 342 II--PVHSVADNINIsarRHHLRAGCLINNRWEAENADRF-IRSLN-IKTPSREQLI----MNLSGGNQQKAILGRWLSE 413
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1119351554 174 SPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAP 240
Cdd:PRK11288 414 DMKVILLDEPTRGIDVGAKHEIYNVIYELA-AQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
157-235 |
3.08e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 57.91 E-value: 3.08e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1119351554 157 LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQeMGMLLITHDLGVVAEMCDRVVVMYAGRV 235
Cdd:TIGR02633 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG-VAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
28-237 |
3.54e-09 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 58.42 E-value: 3.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 28 VDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDtpgriAGGAVRFEGTDLTQLQEKDMRryrgNELAMIFQEPM----- 102
Cdd:TIGR00957 1305 INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES-----AEGEIIIDGLNIAKIGLHDLR----FKITIIPQDPVlfsgs 1375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 103 --TSLNPvlrIGRQLEEPIMLHMGYSRkkarehaIHTLrLVGIPraeevvDDYPHQ-------LSGGMRQRVMIAMAMSC 173
Cdd:TIGR00957 1376 lrMNLDP---FSQYSDEEVWWALELAH-------LKTF-VSALP------DKLDHEcaeggenLSVGQRQLVCLARALLR 1438
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 174 SPKLLIADEPTTALDVT----IQAQIldlmkRLKEEqEMGMLLITHDLGVVAEMCdRVVVMYAGRVVE 237
Cdd:TIGR00957 1439 KTKILVLDEATAAVDLEtdnlIQSTI-----RTQFE-DCTVLTIAHRLNTIMDYT-RVIVLDKGEVAE 1499
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
26-219 |
4.35e-09 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 55.65 E-value: 4.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 26 SGVDFHINKGEVLGLVGESGCGKsvTSL--SIMRLLkdtpgRIAGGAVRFEGTDLTQLQEKDMRRYRGNELAMifqepmt 103
Cdd:PRK13539 19 SGLSFTLAAGEALVLTGPNGSGK--TTLlrLIAGLL-----PPAAGTIKLDGGDIDDPDVAEACHYLGHRNAM------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 104 slNPVLRIGRQLEepimlhmGYSR-KKAREHAIH-TLRLVGIPRAEEVVDDYphqLSGGMRQRVMIAmamscspKLLIA- 180
Cdd:PRK13539 85 --KPALTVAENLE-------FWAAfLGGEELDIAaALEAVGLAPLAHLPFGY---LSAGQKRRVALA-------RLLVSn 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1119351554 181 ------DEPTTALDVTIQAQILDLMK-RLKEEqemGMLLI-TH-DLGV 219
Cdd:PRK13539 146 rpiwilDEPTAALDAAAVALFAELIRaHLAQG---GIVIAaTHiPLGL 190
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
20-246 |
5.75e-09 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 57.44 E-value: 5.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 20 GSVMAVSGVDFHINKGEVLGLVGESGCGKSvTSLSImrllkdtpgrIAG------GAVRFEGTDLTQlqekdmRRYRgne 93
Cdd:NF033858 12 GKTVALDDVSLDIPAGCMVGLIGPDGVGKS-SLLSL----------IAGarkiqqGRVEVLGGDMAD------ARHR--- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 94 lamifqepmTSLNPvlRI-------GRQL------EEPIMLH---MGYSRKkAREHAIHTL-----------RLVGipra 146
Cdd:NF033858 72 ---------RAVCP--RIaympqglGKNLyptlsvFENLDFFgrlFGQDAA-ERRRRIDELlratglapfadRPAG---- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 147 eevvddyphQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmGMLLIthdlgvV------ 220
Cdd:NF033858 136 ---------KLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLSRRQFWELIDRIRAERP-GMSVL------Vatayme 199
|
250 260
....*....|....*....|....*..
gi 1119351554 221 -AEMCDRVVVMYAGRVVEEAPVKELFE 246
Cdd:NF033858 200 eAERFDWLVAMDAGRVLATGTPAELLA 226
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
35-231 |
7.22e-09 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 55.84 E-value: 7.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 35 GEVLGLVGESGCGKSvTSLSIMrllkdtpgriAGGAVrfegTDLTQLQEKD-----MRRYRGNELAMIFQE-------PM 102
Cdd:cd03236 26 GQVLGLVGPNGIGKS-TALKIL----------AGKLK----PNLGKFDDPPdwdeiLDEFRGSELQNYFTKllegdvkVI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 103 TSLNPVLRIGRQLEEPIMLHMgySRKKAR---EHAIHTLRLvgipraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLI 179
Cdd:cd03236 91 VKPQYVDLIPKAVKGKVGELL--KKKDERgklDELVDQLEL------RHVLDRNIDQLSGGELQRVAIAAALARDADFYF 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1119351554 180 ADEPTTALDVTIQAQILDLMKRLKEEqEMGMLLITHDLGVVAEMCDRVVVMY 231
Cdd:cd03236 163 FDEPSSYLDIKQRLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHCLY 213
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
34-231 |
1.19e-08 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 56.33 E-value: 1.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 34 KGEVLGLVGESGCGKSvTSLSIMR-LLKDTPGRIAGGAvrfegtdltqlqEKD--MRRYRGNELAMIFQ-----EPMTSL 105
Cdd:COG1245 98 KGKVTGILGPNGIGKS-TALKILSgELKPNLGDYDEEP------------SWDevLKRFRGTELQDYFKklangEIKVAH 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 106 NP--VLRIGRQLE-EPIMLHMGYSRKKAREHAIHTLRLvgipraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADE 182
Cdd:COG1245 165 KPqyVDLIPKVFKgTVRELLEKVDERGKLDELAEKLGL------ENILDRDISELSGGELQRVAIAAALLRDADFYFFDE 238
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1119351554 183 PTTALDVTiqaQILDLMKRLKEEQEMG--MLLITHDLGVVAEMCDRVVVMY 231
Cdd:COG1245 239 PSSYLDIY---QRLNVARLIRELAEEGkyVLVVEHDLAILDYLADYVHILY 286
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
157-229 |
1.93e-08 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 55.59 E-value: 1.93e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 157 LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVV 229
Cdd:PRK13409 454 LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMV 526
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
69-229 |
3.01e-08 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 55.42 E-value: 3.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 69 GAVRFEGTDLTQLQEKDMRryrgNELAMIFQEPM---TSLNPVLRIGRQ---LEEPimlhmgysrKKAREHAIHTLRLVG 142
Cdd:PTZ00265 1277 GKILLDGVDICDYNLKDLR----NLFSIVSQEPMlfnMSIYENIKFGKEdatREDV---------KRACKFAAIDEFIES 1343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 143 IPRAEEV-VDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVa 221
Cdd:PTZ00265 1344 LPNKYDTnVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASI- 1422
|
....*...
gi 1119351554 222 EMCDRVVV 229
Cdd:PTZ00265 1423 KRSDKIVV 1430
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
32-228 |
3.38e-08 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 54.79 E-value: 3.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 32 INKGEVLGLVGESGCGKSvtslSIMRLLKdtpGRIA--GGAVRFEGTdltqlqekdmrryrgNELAMIFQE----PMTSL 105
Cdd:PRK10636 24 INPGQKVGLVGKNGCGKS----TLLALLK---NEISadGGSYTFPGN---------------WQLAWVNQEtpalPQPAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 106 NPVL---RIGRQLEEpimlHMGYSRKKAREHAIHTLR------------------LVGIPRAEEVVDDYPHQLSGGMRQR 164
Cdd:PRK10636 82 EYVIdgdREYRQLEA----QLHDANERNDGHAIATIHgkldaidawtirsraaslLHGLGFSNEQLERPVSDFSGGWRMR 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119351554 165 VMIAMAMSCSPKLLIADEPTTALDVTiqaQILDLMKRLKEEQEMgMLLITHDLGVVAEMCDRVV 228
Cdd:PRK10636 158 LNLAQALICRSDLLLLDEPTNHLDLD---AVIWLEKWLKSYQGT-LILISHDRDFLDPIVDKII 217
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
34-231 |
3.74e-08 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 54.81 E-value: 3.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 34 KGEVLGLVGESGCGKSvTSLSIMrllkdtpgriAGGAV----RFEGTDltqlqEKD--MRRYRGNELAMIFQ-----EPM 102
Cdd:PRK13409 98 EGKVTGILGPNGIGKT-TAVKIL----------SGELIpnlgDYEEEP-----SWDevLKRFRGTELQNYFKklyngEIK 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 103 TSLNP--VLRIGRQLEEPI--MLHMGYSRKKAREhaihtlrLVGIPRAEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLL 178
Cdd:PRK13409 162 VVHKPqyVDLIPKVFKGKVreLLKKVDERGKLDE-------VVERLGLENILDRDISELSGGELQRVAIAAALLRDADFY 234
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 179 IADEPTTALDVTIQAQILDLMKRLKEEQEmgMLLITHDLGVVAEMCDRVVVMY 231
Cdd:PRK13409 235 FFDEPTSYLDIRQRLNVARLIRELAEGKY--VLVVEHDLAVLDYLADNVHIAY 285
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
5-222 |
3.77e-08 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 52.88 E-value: 3.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 5 LLEVQGLktEFRRDGGSVMavSGVDFHINKGEVLGLVGESGCGKsvTSLsiMRLLkdtpgriAG------GAVRFEGTDL 78
Cdd:PRK13538 1 MLEARNL--ACERDERILF--SGLSFTLNAGELVQIEGPNGAGK--TSL--LRIL-------AGlarpdaGEVLWQGEPI 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 79 TQLQEkdmrRYRGNEL-----AMIFQEpmtsLNPV--LRIGRQLEEPimlhmgysrkkAREHAIHT-LRLVGIPRAEEVv 150
Cdd:PRK13538 66 RRQRD----EYHQDLLylghqPGIKTE----LTALenLRFYQRLHGP-----------GDDEALWEaLAQVGLAGFEDV- 125
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119351554 151 ddyP-HQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMkrLKEEQEMGMLLIT--HDLGVVAE 222
Cdd:PRK13538 126 ---PvRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALL--AQHAEQGGMVILTthQDLPVASD 195
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
25-246 |
3.86e-08 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 54.95 E-value: 3.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 25 VSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAggavrFEGTdltqlqekdmrryrgneLAMIFQEPMT- 103
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH-----MKGS-----------------VAYVPQQAWIq 711
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 104 --SLNPVLRIGRQLEEPimlhmgysRKKAREHAIHTL-RLVGIPRAEEV-VDDYPHQLSGGMRQRVMIAMAMSCSPKLLI 179
Cdd:TIGR00957 712 ndSLRENILFGKALNEK--------YYQQVLEACALLpDLEILPSGDRTeIGEKGVNLSGGQKQRVSLARAVYSNADIYL 783
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 180 ADEPTTALDVTIQAQILDlmkrlKEEQEMGML------LITHDLGVVAEMcDRVVVMYAGRVVEEAPVKELFE 246
Cdd:TIGR00957 784 FDDPLSAVDAHVGKHIFE-----HVIGPEGVLknktriLVTHGISYLPQV-DVIIVMSGGKISEMGSYQELLQ 850
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
19-233 |
3.90e-08 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 53.10 E-value: 3.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 19 GGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGriaggAVRFEGTDLTQLQEKDMRRYRGNELAMIF 98
Cdd:cd03290 11 GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEG-----KVHWSNKNESEPSFEATRSRNRYSVAYAA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 99 QEPMTsLNPVLrigrqlEEPIMLHMGYSRKKAREhAIHTLRLvgipraEEVVDDYPH-----------QLSGGMRQRVMI 167
Cdd:cd03290 86 QKPWL-LNATV------EENITFGSPFNKQRYKA-VTDACSL------QPDIDLLPFgdqteigergiNLSGGQRQRICV 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 168 AMAMSCSPKLLIADEPTTALDVTIQAQILD--LMKRLKEEQEMgMLLITHDLGVVAEmCDRVVVMYAG 233
Cdd:cd03290 152 ARALYQNTNIVFLDDPFSALDIHLSDHLMQegILKFLQDDKRT-LVLVTHKLQYLPH-ADWIIAMKDG 217
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
157-229 |
7.29e-08 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 53.63 E-value: 7.29e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1119351554 157 LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVV 229
Cdd:COG1245 456 LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAENRGKTAMVVDHDIYLIDYISDRLMV 528
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
34-226 |
7.55e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 50.83 E-value: 7.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 34 KGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggaVRFEGTDLTQLQEKDMRryrgnelamifqepmtslnpvlrigr 113
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV----IYIDGEDILEEVLDQLL-------------------------- 50
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 114 qleepimlhmgysrkkarehaihtlrlvgipraEEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQA 193
Cdd:smart00382 51 ---------------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEA 97
|
170 180 190
....*....|....*....|....*....|....*...
gi 1119351554 194 QILDL-----MKRLKEEQEMGMLLITHDLGVVAEMCDR 226
Cdd:smart00382 98 LLLLLeelrlLLLLKSEKNLTVILTTNDEKDLGPALLR 135
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
2-244 |
7.70e-08 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 53.52 E-value: 7.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 2 TSKLLEVQGLKTEFrrdgGSVMAVSGVDFHINKGEVLGLVGESGCGKSVtslsimrLLKDTPGRIA--GGAVRFEG---T 76
Cdd:PRK15439 8 APPLLCARSISKQY----SGVEVLKGIDFTLHAGEVHALLGGNGAGKST-------LMKIIAGIVPpdSGTLEIGGnpcA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 77 DLTQLQEKDMRRYrgnelaMIFQEPMtsLNPVLRIgrqlEEPIML----HMGYSRK---KAREHAIHtLRLVGIPRAEEV 149
Cdd:PRK15439 77 RLTPAKAHQLGIY------LVPQEPL--LFPNLSV----KENILFglpkRQASMQKmkqLLAALGCQ-LDLDSSAGSLEV 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 150 VDdyphqlsggmRQRVMIAMAMSCSPKLLIADEPTTALdvtIQAQILDLMKRLKE--EQEMGMLLITHDLGVVAEMCDRV 227
Cdd:PRK15439 144 AD----------RQIVEILRGLMRDSRILILDEPTASL---TPAETERLFSRIREllAQGVGIVFISHKLPEIRQLADRI 210
|
250
....*....|....*..
gi 1119351554 228 VVMYAGRVVEEAPVKEL 244
Cdd:PRK15439 211 SVMRDGTIALSGKTADL 227
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
27-238 |
7.87e-08 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 52.27 E-value: 7.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 27 GVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGriaGGAVRFegtdltqlqekdmrryrgnelamifqepmtsln 106
Cdd:COG2401 48 DLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPV---AGCVDV--------------------------------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 107 PVLRIGRqlEEPIMLHMGysRKKAREHAIHTLRLVGIpraeevVDDY-----PHQLSGGMRQRVMIAMAMSCSPKLLIAD 181
Cdd:COG2401 92 PDNQFGR--EASLIDAIG--RKGDFKDAVELLNAVGL------SDAVlwlrrFKELSTGQKFRFRLALLLAERPKLLVID 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 182 EPTTALDVTiQAQILDL-MKRLKEEQEMGMLLITHDLGVVAEMCDRVVVM--YAGRVVEE 238
Cdd:COG2401 162 EFCSHLDRQ-TAKRVARnLQKLARRAGITLVVATHHYDVIDDLQPDLLIFvgYGGVPEEK 220
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
25-214 |
1.00e-07 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 51.00 E-value: 1.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 25 VSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLkdtpgriAGgavrfegtdLTQLQEKDMRRYRGNELAMIFQEP-MT 103
Cdd:cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKS----SLFRAL-------AG---------LWPWGSGRIGMPEGEDLLFLPQRPyLP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 104 SLnpvlrigrqleepimlhmgysrkkarehaihTLRlvgipraEEVVddYP--HQLSGGMRQRVMIAMAMSCSPKLLIAD 181
Cdd:cd03223 77 LG-------------------------------TLR-------EQLI--YPwdDVLSGGEQQRLAFARLLLHKPKFVFLD 116
|
170 180 190
....*....|....*....|....*....|...
gi 1119351554 182 EPTTALDVTIQAQILDLMKrlkeeqEMGMLLIT 214
Cdd:cd03223 117 EATSALDEESEDRLYQLLK------ELGITVIS 143
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
157-231 |
1.01e-07 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 51.03 E-value: 1.01e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1119351554 157 LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLITHDLGVVAEMCDRVVVMY 231
Cdd:cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
24-235 |
1.57e-07 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 53.09 E-value: 1.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 24 AVSGVDFHINKGEVLGLVGESGCGKSvTSLSIMR-LLKDTPGRIAGGAVRFEgTDLTQLQEkdmrryrgnELAMIFQepm 102
Cdd:TIGR01257 945 AVDRLNITFYENQITAFLGHNGAGKT-TTLSILTgLLPPTSGTVLVGGKDIE-TNLDAVRQ---------SLGMCPQ--- 1010
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 103 tslNPVLRIGRQLEEPIMLHM---GYSRKKAREHAIHTLRLVGI--PRAEEVVDdyphqLSGGMRQRVMIAMAMSCSPKL 177
Cdd:TIGR01257 1011 ---HNILFHHLTVAEHILFYAqlkGRSWEEAQLEMEAMLEDTGLhhKRNEEAQD-----LSGGMQRKLSVAIAFVGDAKV 1082
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 178 LIADEPTTALDVTIQAQILDLMkrLKEEQEMGMLLITHDLGVVAEMCDRVVVMYAGRV 235
Cdd:TIGR01257 1083 VVLDEPTSGVDPYSRRSIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
157-235 |
2.22e-07 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 52.04 E-value: 2.22e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1119351554 157 LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmGMLLITHDLGVVAEMCDRVVVMYAGRV 235
Cdd:PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDK-GIIIISSEMPELLGITDRILVMSNGLV 469
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
28-215 |
2.52e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 50.33 E-value: 2.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 28 VDFHINKGEVLGLVGESGCGKSVtslsimrLLKDTPG--RIAGGAVRFEGTDLtqlqEKDMRRYRGNelaMIFQEPMTSL 105
Cdd:PRK13540 20 ISFHLPAGGLLHLKGSNGAGKTT-------LLKLIAGllNPEKGEILFERQSI----KKDLCTYQKQ---LCFVGHRSGI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 106 NPVLrigrQLEEPIMLHMGYSRKkarehAIHTLRLVGIPRAEEVVdDYPHQL--SGGMRQRVMIAMAMScSPKLLIADEP 183
Cdd:PRK13540 86 NPYL----TLRENCLYDIHFSPG-----AVGITELCRLFSLEHLI-DYPCGLlsSGQKRQVALLRLWMS-KAKLWLLDEP 154
|
170 180 190
....*....|....*....|....*....|....
gi 1119351554 184 TTALDvtiQAQILDLMKRLKEEQEMG--MLLITH 215
Cdd:PRK13540 155 LVALD---ELSLLTIITKIQEHRAKGgaVLLTSH 185
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
28-220 |
2.56e-07 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 52.34 E-value: 2.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 28 VDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAGgavrfegTDLTQLQEKDMRRYRgNELAMIFQEPMT---- 103
Cdd:PTZ00265 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIII-------NDSHNLKDINLKWWR-SKIGVVSQDPLLfsns 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 104 ----------SLNPVLRIGRQLEEPIMLHMGYSRKKAREHA------------------IHTLRLVGIPRAEEVVD---- 151
Cdd:PTZ00265 476 iknnikyslySLKDLEALSNYYNEDGNDSQENKNKRNSCRAkcagdlndmsnttdsnelIEMRKNYQTIKDSEVVDvskk 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 152 ----DY---------------PHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLL 212
Cdd:PTZ00265 556 vlihDFvsalpdkyetlvgsnASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITII 635
|
....*...
gi 1119351554 213 ITHDLGVV 220
Cdd:PTZ00265 636 IAHRLSTI 643
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
19-238 |
5.01e-07 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 49.24 E-value: 5.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 19 GGSVMAVSGVDFHINKGEVLGLVGESGCGKSVtslsimrLLKDTpgriaggavrfegtdltqLQEKDMRRYrgnelamIF 98
Cdd:cd03238 5 GANVHNLQNLDVSIPLNVLVVVTGVSGSGKST-------LVNEG------------------LYASGKARL-------IS 52
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 99 QEPMTSLNPVLRIGrQLEEPIMLHMGYsrkkarehaihtLRLvGIPRAeevvddyphQLSGGMRQRVMIA--MAMSCSPK 176
Cdd:cd03238 53 FLPKFSRNKLIFID-QLQFLIDVGLGY------------LTL-GQKLS---------TLSGGELQRVKLAseLFSEPPGT 109
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 177 LLIADEPTTALDVTIQAQILDLMKRLKEEQEMgMLLITHDLGVVaEMCDRVVVM------YAGRVVEE 238
Cdd:cd03238 110 LFILDEPSTGLHQQDINQLLEVIKGLIDLGNT-VILIEHNLDVL-SSADWIIDFgpgsgkSGGKVVFS 175
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
27-246 |
8.04e-07 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 49.40 E-value: 8.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 27 GVDFHINKGEVLGLVGESGCGKSVTSLSImrllkdtPGR----IAGGAVRFEGTDLTQLQEKDMrryRGNELAMIFQEPM 102
Cdd:PRK09580 19 GLNLEVRPGEVHAIMGPNGSGKSTLSATL-------AGRedyeVTGGTVEFKGKDLLELSPEDR---AGEGIFMAFQYPV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 103 ------------TSLNPVlRIGRQlEEPImlhmgySRKKAREHAIHTLRLVGIPrAEEVVDDYPHQLSGGMRQRVMIAMA 170
Cdd:PRK09580 89 eipgvsnqfflqTALNAV-RSYRG-QEPL------DRFDFQDLMEEKIALLKMP-EDLLTRSVNVGFSGGEKKRNDILQM 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 171 MSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEmGMLLITHDLGVVAEM-CDRVVVMYAGRVVEEAP---VKELFE 246
Cdd:PRK09580 160 AVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKR-SFIIVTHYQRILDYIkPDYVHVLYQGRIVKSGDftlVKQLEE 238
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
157-247 |
9.24e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 50.74 E-value: 9.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 157 LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDlmKRLKEE-QEMGMLLITHDLGVVAEMcDRVVVMYAGRV 235
Cdd:PLN03232 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFD--SCMKDElKGKTRVLVTNQLHFLPLM-DRIILVSEGMI 817
|
90
....*....|..
gi 1119351554 236 VEEAPVKELFEN 247
Cdd:PLN03232 818 KEEGTFAELSKS 829
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
155-231 |
1.15e-06 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 47.74 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 155 HQLSGGMRQRVMIAMAMS-CSPK---LLIADEPTTALDVTIQAQILDLMKRLKEEQEMgMLLITHDLGvVAEMCDRVVVM 230
Cdd:cd03227 76 LQLSGGEKELSALALILAlASLKprpLYILDEIDRGLDPRDGQALAEAILEHLVKGAQ-VIVITHLPE-LAELADKLIHI 153
|
.
gi 1119351554 231 Y 231
Cdd:cd03227 154 K 154
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
22-244 |
1.77e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 49.34 E-value: 1.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 22 VMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLL-----KDTpgriagGAVRFEGTdltQLQEKDMRRYRGNELAM 96
Cdd:PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKS----TLLKCLfgiyqKDS------GSILFQGK---EIDFKSSKEALENGISM 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 97 IFQEpmtsLNPVLrigrqlEEPIMLHMGYSR----------KKAREHAIHTLRLVGI---PRaEEVVDdyphqLSGGMRQ 163
Cdd:PRK10982 78 VHQE----LNLVL------QRSVMDNMWLGRyptkgmfvdqDKMYRDTKAIFDELDIdidPR-AKVAT-----LSVSQMQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 164 RVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMGMLLITHDLGVVAEMCDRVVVMYAGRVVEEAPVKE 243
Cdd:PRK10982 142 MIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK-ERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAG 220
|
.
gi 1119351554 244 L 244
Cdd:PRK10982 221 L 221
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
1-246 |
2.57e-06 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 48.95 E-value: 2.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 1 MTSKLLEVQGLKTEFRRDGgsvMAVSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIaggavRFEGTDLTQ 80
Cdd:PRK10790 336 LQSGRIDIDNVSFAYRDDN---LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI-----RLDGRPLSS 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 81 LQEKDMRryrgNELAMIFQEPMT---SLNPVLRIGRQLEEpimlhmgysrkKAREHAIHTLRLVGIPRA-----EEVVDD 152
Cdd:PRK10790 408 LSHSVLR----QGVAMVQQDPVVladTFLANVTLGRDISE-----------EQVWQALETVQLAELARSlpdglYTPLGE 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 153 YPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDV-TIQA--QILDLMKrlkeeQEMGMLLITHDLGVVAEmCDRVVV 229
Cdd:PRK10790 473 QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSgTEQAiqQALAAVR-----EHTTLVVIAHRLSTIVE-ADTILV 546
|
250
....*....|....*..
gi 1119351554 230 MYAGRVVEEAPVKELFE 246
Cdd:PRK10790 547 LHRGQAVEQGTHQQLLA 563
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
19-233 |
3.00e-06 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 49.24 E-value: 3.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 19 GGSVMAVSGVDFHINKGEVLGLVGESGCGKSVTslsiMRLLKDTPGRIAGGAVRFEGTDLTQLQEkdmrryrgnelamif 98
Cdd:TIGR01257 1949 GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTT----FKMLTGDTTVTSGDATVAGKSILTNISD--------------- 2009
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 99 qepmtslnpvlrigrqleepIMLHMGYSRK--------KAREHAIHTLRLVGIPrAEEV----------------VDDYP 154
Cdd:TIGR01257 2010 --------------------VHQNMGYCPQfdaiddllTGREHLYLYARLRGVP-AEEIekvanwsiqslglslyADRLA 2068
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1119351554 155 HQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEqEMGMLLITHDLGVVAEMCDRVVVMYAG 233
Cdd:TIGR01257 2069 GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
157-247 |
3.08e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 48.97 E-value: 3.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 157 LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDlmKRLKEE-QEMGMLLITHDLGVVAEMcDRVVVMYAGRV 235
Cdd:PLN03130 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD--KCIKDElRGKTRVLVTNQLHFLSQV-DRIILVHEGMI 817
|
90
....*....|..
gi 1119351554 236 VEEAPVKELFEN 247
Cdd:PLN03130 818 KEEGTYEELSNN 829
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
38-216 |
4.49e-06 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 48.01 E-value: 4.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 38 LGLVGESGCGKSvTSLSIMRLLkDTPgrIAGGAVRFEGTDLTQL-QE------KDMR---------------RYrgNELA 95
Cdd:TIGR03719 34 IGVLGLNGAGKS-TLLRIMAGV-DKD--FNGEARPQPGIKVGYLpQEpqldptKTVRenveegvaeikdaldRF--NEIS 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 96 MIFQEPMTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLvgiPRAEEVVDDyphqLSGGMRQRVMIAMAMSCSP 175
Cdd:TIGR03719 108 AKYAEPDADFDKLAAEQAELQEIIDAADAWDLDSQLEIAMDALRC---PPWDADVTK----LSGGERRRVALCRLLLSKP 180
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1119351554 176 KLLIADEPTTALDvtiqAQILDLMKRLKEEQEMGMLLITHD 216
Cdd:TIGR03719 181 DMLLLDEPTNHLD----AESVAWLERHLQEYPGTVVAVTHD 217
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
21-234 |
7.88e-06 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 45.92 E-value: 7.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 21 SVMAVSGVDFHINKGEVLGLVGESGCGKSvtSL--SI---MRLLKDT---PGRIA---------GGAVR----Fegtdlt 79
Cdd:cd03250 17 TSFTLKDINLEVPKGELVAIVGPVGSGKS--SLlsALlgeLEKLSGSvsvPGSIAyvsqepwiqNGTIRenilF------ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 80 qLQEKDMRRYRgnelamifqepmtslnPVLRiGRQLEEPI-MLHMGysrkkarehaIHTLrlVGipraEEVVDdyphqLS 158
Cdd:cd03250 89 -GKPFDEERYE----------------KVIK-ACALEPDLeILPDG----------DLTE--IG----EKGIN-----LS 129
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 159 GGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILD--LMKRLKEEQEmgMLLITHDLGVVAEmCDRVVVMYAGR 234
Cdd:cd03250 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEncILGLLLNNKT--RILVTHQLQLLPH-ADQIVVLDNGR 204
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
28-253 |
8.37e-06 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 46.44 E-value: 8.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 28 VDFHINKGEVLGLVGESGCGKSVTSLSIMRLLKDTPGRIAggavrFEGTDLTQLQEKDMRryrgNELAMIFQEPmtslnp 107
Cdd:cd03288 40 VKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV-----IDGIDISKLPLHTLR----SRLSIILQDP------ 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 108 VLRIGRqleepIMLHMGYSRK-------KAREHAIHTLRLVGIPRA-EEVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLI 179
Cdd:cd03288 105 ILFSGS-----IRFNLDPECKctddrlwEALEIAQLKNMVKSLPGGlDAVVTEGGENFSVGQRQLFCLARAFVRKSSILI 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1119351554 180 ADEPTTALDVTIQaQILD--LMKRLKEEQemgMLLITHDLGVVAEmCDRVVVMYAGRVVEEAPVKELFENPQHPYT 253
Cdd:cd03288 180 MDEATASIDMATE-NILQkvVMTAFADRT---VVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLAQEDGVFA 250
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
156-216 |
6.51e-05 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 43.36 E-value: 6.51e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 156 QLSGGMRQ------RVMIAMAMSCSPKLLIADEPTTALDV-TIQAQILDLMKRLKEEQEMGMLLITHD 216
Cdd:cd03240 115 RCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDEeNIEESLAEIIEERKSQKNFQLIVITHD 182
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
6-192 |
1.07e-04 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 44.13 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFRRDGGSVMavSGVDFHINKGEVLGLVGESGCGKSVTSLSIMRLLkDTPGRIAGGAVRFEGTDLTQlqekd 85
Cdd:TIGR01271 1218 MDVQGLTAKYTEAGRAVL--QDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL-STEGEIQIDGVSWNSVTLQT----- 1289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 86 MRRYRGNELAMIFQEPMT---SLNPVLRIGrqlEEPIMlhmgysrKKAREHAIHTLRLVGIPRAEEVVDDYPHQLSGGMR 162
Cdd:TIGR01271 1290 WRKAFGVIPQKVFIFSGTfrkNLDPYEQWS---DEEIW-------KVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359
|
170 180 190
....*....|....*....|....*....|.
gi 1119351554 163 QRVMIAMAMSCSPKLLIADEPTTALD-VTIQ 192
Cdd:TIGR01271 1360 QLMCLARSILSKAKILLLDEPSAHLDpVTLQ 1390
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
156-213 |
2.03e-04 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 43.08 E-value: 2.03e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 156 QLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQeMGMLLI 213
Cdd:PRK10938 135 YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSG-ITLVLV 191
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
157-220 |
6.37e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 41.54 E-value: 6.37e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 157 LSGGMRQRVMIAMAMS---CSPKLLIADEPTTAL---DVtiqAQILDLMKRLKeEQEMGMLLITHDLGVV 220
Cdd:TIGR00630 830 LSGGEAQRIKLAKELSkrsTGRTLYILDEPTTGLhfdDI---KKLLEVLQRLV-DKGNTVVVIEHNLDVI 895
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
39-188 |
9.26e-04 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 40.87 E-value: 9.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 39 GLVGESGCGKSvTSLSIMRLLkDTPgrIAGGAVRFEGTDLTQL-QE------KDMR---------------RYrgNELAM 96
Cdd:PRK11819 37 GVLGLNGAGKS-TLLRIMAGV-DKE--FEGEARPAPGIKVGYLpQEpqldpeKTVRenveegvaevkaaldRF--NEIYA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 97 IFQEPMTSLNPVLRIGRQLEEPIMLHMGYSRKKAREHAIHTLRLvgiPRAEEVVDdyphQLSGGMRQRVMIAMAMSCSPK 176
Cdd:PRK11819 111 AYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC---PPWDAKVT----KLSGGERRRVALCRLLLEKPD 183
|
170
....*....|..
gi 1119351554 177 LLIADEPTTALD 188
Cdd:PRK11819 184 MLLLDEPTNHLD 195
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
157-216 |
9.55e-04 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 41.09 E-value: 9.55e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 157 LSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVtiqaQILDLMKRLKEEQEMGMLLITHD 216
Cdd:PRK11147 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDV----ETLELLEELLDSYQGTVLLVSHD 496
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
6-90 |
2.40e-03 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 39.40 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 6 LEVQGLKTEFRR-DGGSVMAVSGVDFHINKGEVLGLVGESGCGKSvtslSIMRLLkdtPG--RIAGGAVRFEGTDLTqlq 82
Cdd:COG4615 328 LELRGVTYRYPGeDGDEGFTLGPIDLTIRRGELVFIVGGNGSGKS----TLAKLL---TGlyRPESGEILLDGQPVT--- 397
|
....*...
gi 1119351554 83 EKDMRRYR 90
Cdd:COG4615 398 ADNREAYR 405
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
157-228 |
2.44e-03 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 39.13 E-value: 2.44e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1119351554 157 LSGGMRQRVMIAMAMS---CSPKLLIADEPTTAL---DVtiqAQILDLMKRLKeEQEMGMLLITHDLGVVAeMCDRVV 228
Cdd:cd03271 170 LSGGEAQRIKLAKELSkrsTGKTLYILDEPTTGLhfhDV---KKLLEVLQRLV-DKGNTVVVIEHNLDVIK-CADWII 242
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
156-193 |
2.52e-03 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 39.53 E-value: 2.52e-03
10 20 30
....*....|....*....|....*....|....*....
gi 1119351554 156 QLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDV-TIQA 193
Cdd:TIGR03719 443 QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVeTLRA 481
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
133-228 |
3.84e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 39.04 E-value: 3.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 133 HAIHTLRLVGIPRAEEVvddypHQLSGGMRQRVMIA---MAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKeEQEMG 209
Cdd:PRK00635 791 HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAyelLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLT-HQGHT 864
|
90
....*....|....*....
gi 1119351554 210 MLLITHDLGVVaEMCDRVV 228
Cdd:PRK00635 865 VVIIEHNMHVV-KVADYVL 882
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
136-260 |
3.86e-03 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 39.06 E-value: 3.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 136 HTLRLVGIPRAEEVV--DDYPHQLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDVTIQAQILDLMKRLKEEQEMGMLLI 213
Cdd:PLN03140 314 YTLKILGLDICKDTIvgDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMS 393
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1119351554 214 -------THDLgvvaemCDRVVVMYAGRVVEEAP---VKELFEN-----PQHPYTKGLIQSV 260
Cdd:PLN03140 394 llqpapeTFDL------FDDIILLSEGQIVYQGPrdhILEFFEScgfkcPERKGTADFLQEV 449
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
30-214 |
4.52e-03 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 38.96 E-value: 4.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 30 FHINKGEVLGLVGESGCGKSvtslSIMRLLkdtpgriaGGAVRFEGTDLTqlqeKDmrryRGNELAMIFQEPMTSLnpvl 109
Cdd:TIGR00954 473 FEVPSGNNLLICGPNGCGKS----SLFRIL--------GELWPVYGGRLT----KP----AKGKLFYVPQRPYMTL---- 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 110 rigRQLEEPIMLHMGYSRKKAR-------EHAIHTLRLVGIPRAE---EVVDDYPHQLSGGMRQRVMIAMAMSCSPKLLI 179
Cdd:TIGR00954 529 ---GTLRDQIIYPDSSEDMKRRglsdkdlEQILDNVQLTHILEREggwSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605
|
170 180 190
....*....|....*....|....*....|....*
gi 1119351554 180 ADEPTTALDVTIQAQILDLMKrlkeeqEMGMLLIT 214
Cdd:TIGR00954 606 LDECTSAVSVDVEGYMYRLCR------EFGITLFS 634
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
157-267 |
9.36e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 37.69 E-value: 9.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119351554 157 LSGGMRQRvmIAMAMSCSPKLL----IADEPTTALDvtiQAQILDLMKRLKEEQEMG--MLLITHDLGVVAEmCDRVVVM 230
Cdd:TIGR00630 489 LSGGEAQR--IRLATQIGSGLTgvlyVLDEPSIGLH---QRDNRRLINTLKRLRDLGntLIVVEHDEDTIRA-ADYVIDI 562
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1119351554 231 ------YAGRVVEEAPVKELFENPQH---PYTKGLIQ-SVPKLRQKV 267
Cdd:TIGR00630 563 gpgageHGGEVVASGTPEEILANPDSltgQYLSGRKKiEVPAERRPG 609
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
156-189 |
9.88e-03 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 37.92 E-value: 9.88e-03
10 20 30
....*....|....*....|....*....|....
gi 1119351554 156 QLSGGMRQRVMIAMAMSCSPKLLIADEPTTALDV 189
Cdd:PLN03073 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDL 377
|
|
| |
