|
Name |
Accession |
Description |
Interval |
E-value |
| rpoB |
PRK00405 |
DNA-directed RNA polymerase subunit beta; Reviewed |
1-1165 |
0e+00 |
|
DNA-directed RNA polymerase subunit beta; Reviewed
Pssm-ID: 234749 [Multi-domain] Cd Length: 1112 Bit Score: 2255.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1 MPHPVKVGKGTRMSFSKIDKVLEMPNLIEIQKRSYKWFL-------EEGLMEAFNDISPIQDYTGNLILEFVDYSLdGKP 73
Cdd:PRK00405 1 MVYSYTGKKRIRKSFGKIKEVLELPNLLEIQLDSFDWFLqldvppeDEGLEEVFRSIFPIEDFNGNLSLEFVSYEL-GEP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 74 KYDQEECKERDVTYAVPLKVKVRFINKETGEVKEQEVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGPYYSVQIDKT- 152
Cdd:PRK00405 80 KYDVEECKERGLTYSAPLRVKLRLINKETGEIKEQEVYMGDIPLMTENGTFIINGTERVIVSQLHRSPGVYFDHDKDKTs 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 153 -GKRLFSTTVIPNRGAWLEYETDSNQIISVRIDRTRKLPFTVFVRALGYgTDQEIINLFGE------------------- 212
Cdd:PRK00405 160 sGKLLYSARIIPYRGSWLEFEFDPKDILYVRIDRRRKLPVTVLLRALGY-SDEEILDLFYEkeefgkeievpveyllgkv 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 213 --------------------------DERLLKTLEKDSVKSKEEGLIEVYKKLRPGEPPTVESASSLINSLFFDPKRYDL 266
Cdd:PRK00405 239 laedivdeetgevlaeandeiteeldGPYIRNTLEKDPTSSREEALVEIYRRLRPGEPPTVEAARSLLENLFFDPKRYDL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 267 AKVGRYKFNKKLslvdrivgfvaaenvvdentgeilvqegqkidketaqkiensgvksvniygedekvvkvignnfvdik 346
Cdd:PRK00405 319 SKVGRYKLNKKL-------------------------------------------------------------------- 330
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 347 ahidfnidDLNITEKVhyptlkkiletytteedikealrekigelvpKHIIIDDIIATMSYILNLPHGVGRVDDIDHLGN 426
Cdd:PRK00405 331 --------GLDEDEDV-------------------------------RVLTKEDIIATIKYLINLRNGKGEVDDIDHLGN 371
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 427 RRLRSVGELLQNQFRIGLSRMERVVRERMTIQDMDTITPQALINIRPVVAAIKEFFGSSQLSQFMDQTNPLSELTHKRRL 506
Cdd:PRK00405 372 RRVRSVGELLQNQFRIGLSRMERAVRERMSLQDLDTLTPQDLINAKPVVAAIKEFFGSSQLSQFMDQTNPLSELTHKRRL 451
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 507 SALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTYARINEYGFIEAPYRKVDKerGVVTDEIEYLTA 586
Cdd:PRK00405 452 SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATYARVNEYGFIETPYRKVVD--GKVTDEIVYLTA 529
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 587 DEEEKYVFAQANEPLDEEGRFINKRVVARlRGGDIDVVPSSEVDYVDVSPQQIVSVATAMIPFLENDDANRALMGSNMQR 666
Cdd:PRK00405 530 DEEDNYVIAQANAPLDEDGRFVDELVTAR-YKGEFVLVPPEEVDYMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQR 608
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 667 QAVPLIKTESPIIGTGMEYIAAKDSGTVVVAKNDGIVERVTADKIIVKR----HSDGGKDEYKLLKFKRSNQGTCINQKP 742
Cdd:PRK00405 609 QAVPLLRPEAPLVGTGMERRVARDSGAVVVAKRDGVVEYVDASRIVVRVeeldPGEDGVDIYNLIKFQRSNQNTCINQRP 688
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 743 LVDNGDEVKAGEIIADGPSTDNGEIALGKNLLVGFMTWEGYNYEDAILLSEELVMNDVLTSIHIEEYEAEARDTKLGPEE 822
Cdd:PRK00405 689 IVKVGDRVEKGDVLADGPSTDNGELALGQNVLVAFMPWNGYNFEDAILISERLVKEDVFTSIHIEEYEIEARDTKLGPEE 768
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 823 ITRDIPNVGEDALKNLDERGIIRIGAEVTSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGIIV 902
Cdd:PRK00405 769 ITRDIPNVSEEALRNLDESGIVRIGAEVKPGDILVGKVTPKGETELTPEEKLLRAIFGEKARDVKDTSLRVPHGEEGTVI 848
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 903 DVKVFTR-ENGDELPPGVNVLVRVYIAKKRKISVGDKMAGRHGNKGVISRILPVEDMPFLEDGTPLQVVLNPLGVPSRMN 981
Cdd:PRK00405 849 DVKVFTRiEQGDELPPGVNKLVKVYIAQKRKIQVGDKMAGRHGNKGVVSRILPVEDMPYLEDGTPVDIVLNPLGVPSRMN 928
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 982 IGQVLEVHLGLAAKKLGWKVATPVFDGAKETDIAELLEECGYPVDGKLQLYDGRTGEPFDNRVTVGYMYMLKLHHLVDDK 1061
Cdd:PRK00405 929 IGQILETHLGWAAKGLGIKFATPVFDGAKEEEIKELLEEAGLPEDGKTTLYDGRTGEPFDRPVTVGYMYMLKLHHLVDDK 1008
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1062 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGIPES 1141
Cdd:PRK00405 1009 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVVGRTKVYEAIVKGENIPEPGIPES 1088
|
1210 1220
....*....|....*....|....
gi 1120097870 1142 FKVLIKELQSLCLDVKVLSENADE 1165
Cdd:PRK00405 1089 FNVLVKELQSLGLDVELLDEDGNE 1112
|
|
| RpoB |
COG0085 |
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ... |
12-1162 |
0e+00 |
|
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 439855 [Multi-domain] Cd Length: 1001 Bit Score: 2018.86 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 12 RMSFSKIDKVLEMPNLIEIQKRSYKWFLEEGLMEAFNDISPIQDYTGNLILEFVDYSLdGKPKYDQEECKERDVTYAVPL 91
Cdd:COG0085 1 RWSFAKIKEPLELPNLLEIQLDSFNWFLEEGLQEIFDEISPIEDFTGNLSLEFGDYRL-GEPKYTPEECKERDLTYAAPL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 92 KVKVRFINKETGEVKEQEVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGPYYSVQIDKTGKRLFSTTVIPNRGAWLEY 171
Cdd:COG0085 80 YVKVRLVNKETGEIKEQEVFMGDFPLMTDSGTFIINGTERVIVSQLVRSPGVYFVEEEDKSGKDLYSAKVIPSRGAWLEF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 172 ETDSNQIISVRIDRTRKLPFTVFVRALGYGTDQEIINLFGED---ERLLKTLEKDSVKSKEEGLIEVYKKLRPGEPPTVE 248
Cdd:COG0085 160 ETDKDGTIYVRIDRKRKIPVTVLLRALGLETDEEILEAFGDDpiqEYILATLEKDNTKTQEEALLEIYRKLRPGEPPTIE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 249 SASSLINSLFFDPKRYDLAKVGRYKFNKKLSLvdrivgfvaaenvvdentgeilvqegqkidketaqkiensgvksvnIY 328
Cdd:COG0085 240 RAEQLLDNLFFDPKRYDLAHVGRYKINKKLGL----------------------------------------------DV 273
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 329 GEDEKVVKVignnfvdikahidfniddlnitekvhyptlkkiletytteedikealrekigelvpkhiiiDDIIATMSYI 408
Cdd:COG0085 274 PPEDRVLTA-------------------------------------------------------------EDIVATIKYL 292
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 409 LNLPHGVGRVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDMDTITPQALINIRPVVAAIKEFFGSSQLS 488
Cdd:COG0085 293 LELHLGEREPDDIDHLGNRRVRLVGELLQNQFRVGLSRMERVVRERMTTQDVEAITPQSLINIRPVVAAIKEFFGSSQLS 372
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 489 QFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTYARINEYGFIEAPYR 568
Cdd:COG0085 373 QFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLALYARVNEYGFIETPYR 452
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 569 KVdkERGVVTDEIEYLTADEEEKYVFAQANEPLDEEGRFINKRVVARlRGGDIDVVPSSEVDYVDVSPQQIVSVATAMIP 648
Cdd:COG0085 453 KV--ENGKVTDEIEYLTADEEENYYIAQANAPLDEDGNFLEERVLVR-YRGEEVLVPPEEVDYMDVSPKQIVSVATSLIP 529
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 649 FLENDDANRALMGSNMQRQAVPLIKTESPIigtgmeyiaakdsgtvvvakndgivervtadkiivkrhsdggkDEYKLLK 728
Cdd:COG0085 530 FLEHDDANRALMGANMQRQAVPLLRPEAPL-------------------------------------------LHYPLQK 566
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 729 FKRSNQGTCINQKPLVDNGDEVKAGEIIADGPSTDNGEIALGKNLLVGFMTWEGYNYEDAILLSEELVMNDVLTSIHIEE 808
Cdd:COG0085 567 FQRSNQGTCINQRPIVRVGDRVEKGDVLADGPATDNGELALGQNLLVAFMPWEGYNYEDAIIISERLVKDDVLTSIHIEE 646
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 809 YEAEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRIGAEVTSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRD 888
Cdd:COG0085 647 YEIEARDTKLGPEEITRDIPNVSEEALRNLDEDGIIRIGAEVKGGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRD 726
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 889 TSLKVPHGESGIIVDVKVFTRENGDELPPGVNVLVRVYIAKKRKISVGDKMAGRHGNKGVISRILPVEDMPFLEDGTPLQ 968
Cdd:COG0085 727 TSLRVPHGEKGKVIDVKVFSREEGDELPPGVNKLVRVYVAQKRKIEVGDKLAGRHGNKGVISRILPQEDMPFLEDGTPVD 806
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 969 VVLNPLGVPSRMNIGQVLEVHLGLAAKKLGWKVATPVFDGAKETDIAELLEECGYPVDGKLQLYDGRTGEPFDNRVTVGY 1048
Cdd:COG0085 807 IVLNPLGVPSRMNVGQVLETHLGWAAALLGRRVATPVFDGAPEEEIRELLEKAGLPPDGKEVLYDGRTGEPFDNPVTVGY 886
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1049 MYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIV 1128
Cdd:COG0085 887 MYYLKLHHMVDDKIHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQERLTIKSDDVCGRVKVYEAIV 966
|
1130 1140 1150
....*....|....*....|....*....|....
gi 1120097870 1129 KGENIPEPGIPESFKVLIKELQSLCLDVKVLSEN 1162
Cdd:COG0085 967 KGENIPEPGIPESFKVLLKELQSLGLDVEVLSED 1000
|
|
| rpoB |
TIGR02013 |
DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit ... |
12-1158 |
0e+00 |
|
DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit of Bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit. [Transcription, DNA-dependent RNA polymerase]
Pssm-ID: 273928 [Multi-domain] Cd Length: 1065 Bit Score: 1918.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 12 RMSFSKIDKVLEMPNLIEIQKRSYKWFL----------EEGLMEAFNDISPIQDYTGNLILEFVDYSLDgKPKYDQEECK 81
Cdd:TIGR02013 5 RIDFGKIPEVLEVPNLLEIQLDSYDWFLqqdtppekrkEEGLEEVFKSIFPIEDYTGNIELEYLSYRLG-EPKYSVEECK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 82 ERDVTYAVPLKVKVRFINKE---TGEVKEQEVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGPYYSVQID--KTGKRL 156
Cdd:TIGR02013 84 ERGLTYSAPLKVKLRLINKEedgTKEIKEQDVYMGDIPLMTDRGTFIINGAERVVVSQLHRSPGVFFSSEKDttKSGKVL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 157 FSTTVIPNRGAWLEYETDSNQIISVRIDRTRKLPFTVFVRALGYGTDQEIINLFGEDERLLKTLEKDSVKSKEEGLIEVY 236
Cdd:TIGR02013 164 FSARIIPYRGSWLEFETDKKDVLYVRIDRKRKLPATVLLRALGYTIDTLILNRLGSGEYIRNTLRKDPTNSEEEALVEIY 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 237 KKLRPGEPPTVESASSLINSLFFDPKRYDLAKVGRYKFNKKLSLvdrivgfvaaenvvdentgeilvqegqkidketaqk 316
Cdd:TIGR02013 244 RKLRPGEPPTVEAARSLLENLFFDPKRYDLGRVGRYKLNKKLGL------------------------------------ 287
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 317 iensgvksvniygedekvvkvignnfvdikahidfniddlnitekvHYPTLKKILETytteedikealrekigelvpkhi 396
Cdd:TIGR02013 288 ----------------------------------------------DVPESIGVLTK----------------------- 298
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 397 iiDDIIATMSYILNLPHGVGRVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDMDTITPQALINIRPVVA 476
Cdd:TIGR02013 299 --EDIIATIKYLIKLRNGKGEIDDIDHLGNRRIRSVGELLQNQFRVGLARMERIVRERMSTQDTDTLTPQDLINAKPISA 376
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 477 AIKEFFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTYAR 556
Cdd:TIGR02013 377 AIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTYAR 456
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 557 INEYGFIEAPYRKVDKERGVVTDEIEYLTADEEEKYVFAQANEPLDEEGRFINKRVVARLRGgDIDVVPSSEVDYVDVSP 636
Cdd:TIGR02013 457 VNEYGFIETPYRKVKDGKVVVTDEIDYLTADEEDNYVIAQANAPLDENGRFVEDLVVARYRG-EITLVSPDQVDYMDVSP 535
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 637 QQIVSVATAMIPFLENDDANRALMGSNMQRQAVPLIKTESPIIGTGMEYIAAKDSGTVVVAKNDGIVERVTADKIIVKRH 716
Cdd:TIGR02013 536 KQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPLLRSEAPLVGTGMEAKVARDSGAVIVAKRGGVVEYVDAKRIVIRYD 615
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 717 S-----DGGKDEYKLLKFKRSNQGTCINQKPLVDNGDEVKAGEIIADGPSTDNGEIALGKNLLVGFMTWEGYNYEDAILL 791
Cdd:TIGR02013 616 EdeeepDGGIDIYRLLKYQRSNQDTCINQRPIVSVGDRVEAGDVLADGPSTDLGELALGRNVLVAFMPWNGYNYEDAILI 695
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 792 SEELVMNDVLTSIHIEEYEAEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRIGAEVTSGDILVGKVTPKGETELTAE 871
Cdd:TIGR02013 696 SERLVKDDVFTSIHIEEYEVEARDTKLGPEEITRDIPNVSEEALRNLDENGIVRIGAEVKAGDILVGKVTPKGETELTPE 775
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 872 ERLLRAIFGEKAREVRDTSLKVPHGESGIIVDVKVFTRENGDELPPGVNVLVRVYIAKKRKISVGDKMAGRHGNKGVISR 951
Cdd:TIGR02013 776 EKLLRAIFGEKARDVRDTSLRVPPGVEGTVIDVKVFSREQGDELPPGVNKLVKVYIAQKRKIQVGDKMAGRHGNKGVVSK 855
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 952 ILPVEDMPFLEDGTPLQVVLNPLGVPSRMNIGQVLEVHLGLAAKKLGWK---VATPVFDGAKETDIAELLEECGYPVDGK 1028
Cdd:TIGR02013 856 ILPIEDMPFLEDGTPVDIVLNPLGVPSRMNIGQILETHLGWAGKRLGRKgvpIATPVFDGASEEEIKEYLEKAGLPRDGK 935
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1029 LQLYDGRTGEPFDNRVTVGYMYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQE 1108
Cdd:TIGR02013 936 VRLYDGRTGEQFDRPVTVGYMYMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1015
|
1130 1140 1150 1160 1170
....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1109 ILTVKSDDVVGRVKTYEAIVKGENIPEPGIPESFKVLIKELQSLCLDVKV 1158
Cdd:TIGR02013 1016 MLTVKSDDVVGRTKAYEAIVKGENVPEPGIPESFNVLIKELQSLGLDIEL 1065
|
|
| RNA_pol_B_RPB2 |
cd00653 |
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ... |
27-1158 |
0e+00 |
|
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.
Pssm-ID: 238353 [Multi-domain] Cd Length: 866 Bit Score: 989.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 27 LIEIQKRSYKWFLEEGLMEAFNDISPIQDYT--GNLILEFVDYSLdGKP---------KYDQEECKERDVTYAVPLKVKV 95
Cdd:cd00653 1 LVKQQIDSFNYFLNVGLQEIVKSIPPITDTDddGRLKLKFGDIYL-GKPkveeggvtrKLTPNECRLRDLTYSAPLYVDI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 96 RFINKETGEVKEQEVFMGDFPLMTE------------------------KGTFIINGAERVIVSQLVRSPGPYYsvQIDK 151
Cdd:cd00653 80 RLTVNDKGKIKEQEVFIGEIPIMLRsklcnlngltpeeliklgecpldpGGYFIINGTEKVIINQEQRSPNVII--VEDS 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 152 TGKRLFSTTVIPN----RGAWLEYETDS-NQIISVRIDRTRKlpftvfvralgygtdqeiinlfgederllktlekdsvk 226
Cdd:cd00653 158 KGKRIYTKTSIPSyspyRGSWLEVKSDKkKDRIYVRIDLKRQ-------------------------------------- 199
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 227 skEEGLIEVYKKLRpgepptvesasslinslffdpkrydlakvgrykfnkklslvdrivgfvaaenvvdentgeilvqeg 306
Cdd:cd00653 200 --EEALKYIGKRFE------------------------------------------------------------------ 211
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 307 qkidketaqkiensgvksvniygedekvvkvignnfvdikahidfniddlnitekvhyptlkkiletytteedikealre 386
Cdd:cd00653 --------------------------------------------------------------------------------
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 387 kigelvpkhiiidDIIATMSYILNLPHGVGRVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDM--DTIT 464
Cdd:cd00653 212 -------------DLIYMIRKLILLVLGKGKLDDIDHLGNKRVRLAGELLQNLFRSGLKRLEREVKEKLQKQLSkkKDLT 278
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 465 PQALINIRPVVAAIKEFFGSSQ------------LSQFMDQTNPLSELTHKRRLSAlgpGGLSRERAGFEVRDVHHSHYG 532
Cdd:cd00653 279 PQLLINSKPITSGIKEFLATGNwgskrflmqrsgLSQVLDRLNPLSELSHKRRISS---LGLFRERKGFEVRDLHPSHWG 355
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 533 RMCPIETPEGPNIGLINSLSTYARINeyGFIEAPYRKVDKErgvvtdeieyltadeeekyvfaqanepldeegrfinkrv 612
Cdd:cd00653 356 RICPIETPEGENCGLVKNLALMARIS--GRIERPYRIVEKE--------------------------------------- 394
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 613 varlrggdidvvpsseVDYVDVSPQQIVSVATAMIPFLENDDANRALMGSNMQRQAVPLIKTESPIIGTGMEYIaakdsg 692
Cdd:cd00653 395 ----------------VTHIEISPSQILSVAASLIPFPEHNQSPRNLYQSNMQKQAVGTPALNQQYRMDTKLYL------ 452
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 693 tvvvakndgivervtadkiivkrhsdggkdeykLLKfkrsnqgtciNQKPLVDNGDEvkagEIIAdgpstdNGEIALGKN 772
Cdd:cd00653 453 ---------------------------------LLY----------PQKPLVGTGIE----EYIA------FGELPLGQN 479
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 773 LLVGFMTWEGYNYEDAILLSEELVMNDVLTSIHIEEYEAEARDTKLGPEEITR-DIPNVGEDALKNLDERGIIRIGAEVT 851
Cdd:cd00653 480 AIVAVMSYSGYNFEDAIIINKSSVDRGFFRSIHYKKYEIELRKTKNGPEEITRgDIPNVSEEKLKNLDEDGIIRPGARVE 559
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 852 SGDILVGKVTPKGETELTAeerllraIFGEKAREVRDTSLKVPHGESGIIVDVKVFTREngdeLPPGVNVLVRVYIAKKR 931
Cdd:cd00653 560 PGDILVGKITPKGETESTP-------IFGEKARDVRDTSLKYPGGEKGIVDDVKIFSRE----LNDGGNKLVKVYIRQKR 628
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 932 KISVGDKMAGRHGNKGVISRILPVEDMPFLEDGTPLQVVLNPLGVPSRMNIGQVLEVHLGLAAKKLGWKVATPVFDGAKE 1011
Cdd:cd00653 629 KPQIGDKFASRHGQKGVISKILPQEDMPFTEDGIPPDIILNPHGFPSRMTIGQLLESLLGKAGALLGKFGDATPFDGAEE 708
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1012 TDIAELLEECGYPVDGKLQLYDGRTGEPFDNRVTVGYMYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1091
Cdd:cd00653 709 EDISELLGEAGLNYYGKEVLYDGRTGEPLEAPIFVGPVYYQRLKHMVDDKIHARSTGPYSLLTRQPLKGRSRGGGQRFGE 788
|
1130 1140 1150 1160 1170 1180 1190
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1120097870 1092 MEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIV----------KGENIPEPGIPESFKVLIKELQSLCLDVKV 1158
Cdd:cd00653 789 MERDALIAHGAAYLLQERLTIKSDDVVARVCVKCGIIlsanlcrlckKGTNISKVGIPYAFKLLFQELQSMNIDPRL 865
|
|
| RNA_pol_Rpb2_6 |
pfam00562 |
RNA polymerase Rpb2, domain 6; RNA polymerases catalyze the DNA dependent polymerization of ... |
696-1083 |
0e+00 |
|
RNA polymerase Rpb2, domain 6; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain and the wall domain. The hybrid binding domain binds the nascent RNA strand / template DNA strand in the Pol II transcription elongation complex. This domain contains the important structural motifs, switch 3 and the flap loop and binds an active site metal ion. This domain is also involved in binding to Rpb1 and Rpb3. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 2 (DRII).
Pssm-ID: 459854 [Multi-domain] Cd Length: 371 Bit Score: 564.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 696 VAKNDGIVERVTADKIIVKrhSDGGKDE---YKLLKFKRSNQGT---CINQKPLVDNGDeVKAGeiiadgpstDNGEIAL 769
Cdd:pfam00562 1 VASLIPFVDHNQSPRNTYQ--CAMGKQAmgiYTLNKFYRSDQNTyvlCYPQKPLVKTGA-VEAG---------GFGELPL 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 770 GKNLLVGFMTWEGYNYEDAILLSEELVMNDVLTSIHIEEYEAeaRDTKLGP-EEITRDIPNVGEDALKNLDERGIIRIGA 848
Cdd:pfam00562 69 GQNAIVAVMSYTGYNQEDAIIINKSSVDRGFFTSIHIKEIEA--RKTKLGPiEEITRDIPNVSEEALKKLDEDGIVRVGA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 849 EVTSGDILVGKVtpkGETELTaeeRLLRAIFGEKAREVRDTSLKVPHGESGIIVDVKVFTrengdeLPPGVNVLVRVYIA 928
Cdd:pfam00562 147 EVKPGDILVGKV---GPTELT---KLLRAIFGEKARDVKDTSLKVPPGEEGVVDDVIVFE------LPPGGIKMVKVYIR 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 929 KKRKISVGDKMAGRHGNKGVISRILPVEDMPFLEDGTPLQVVLNPLGVPSRMNIGQVLEVHLGLAAKKLGWKVATPVFDG 1008
Cdd:pfam00562 215 QKRKPEVGDKFASRHGQKGVVSRILPQEDMPFTEDGIPPDIILNPHGVPSRMTIGQLLETHLGKAAALLGVFVDATPFDG 294
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1120097870 1009 AKET--DIAELLEECGYPVDGKLQLYDGRTGEPFDNRVTVGYMYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQ 1083
Cdd:pfam00562 295 ASTEveDIGELLEKAGYNYYGKEVLYDGRTGEPFEAPIFVGPIYYQKLKHMVDDKIHARSTGPYSLLTRQPLGGRAR 371
|
|
| PRK00566 |
PRK00566 |
DNA-directed RNA polymerase subunit beta'; Provisional |
279-327 |
1.11e-10 |
|
DNA-directed RNA polymerase subunit beta'; Provisional
Pssm-ID: 234794 [Multi-domain] Cd Length: 1156 Bit Score: 66.24 E-value: 1.11e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1120097870 279 SLVDRIVGFVAAENVVDENTGEILVQEGQKIDKETAQKIENSGVKSVNI 327
Cdd:PRK00566 801 PLEERILGRVLAEDVVDPETGEVIVPAGTLIDEEIADKIEEAGIEEVKI 849
|
|
| RpoC |
COG0086 |
DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]; DNA-directed RNA ... |
279-327 |
1.47e-05 |
|
DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]; DNA-directed RNA polymerase, beta' subunit/160 kD subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 439856 [Multi-domain] Cd Length: 1165 Bit Score: 49.39 E-value: 1.47e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1120097870 279 SLVDRIVGFVAAENVVDENTGEILVQEGQKIDKETAQKIENSGVKSVNI 327
Cdd:COG0086 800 PLKERILGRVAAEDVVDPGTGEVLVPAGTLIDEEVAEIIEEAGIDSVKV 848
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| rpoB |
PRK00405 |
DNA-directed RNA polymerase subunit beta; Reviewed |
1-1165 |
0e+00 |
|
DNA-directed RNA polymerase subunit beta; Reviewed
Pssm-ID: 234749 [Multi-domain] Cd Length: 1112 Bit Score: 2255.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1 MPHPVKVGKGTRMSFSKIDKVLEMPNLIEIQKRSYKWFL-------EEGLMEAFNDISPIQDYTGNLILEFVDYSLdGKP 73
Cdd:PRK00405 1 MVYSYTGKKRIRKSFGKIKEVLELPNLLEIQLDSFDWFLqldvppeDEGLEEVFRSIFPIEDFNGNLSLEFVSYEL-GEP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 74 KYDQEECKERDVTYAVPLKVKVRFINKETGEVKEQEVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGPYYSVQIDKT- 152
Cdd:PRK00405 80 KYDVEECKERGLTYSAPLRVKLRLINKETGEIKEQEVYMGDIPLMTENGTFIINGTERVIVSQLHRSPGVYFDHDKDKTs 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 153 -GKRLFSTTVIPNRGAWLEYETDSNQIISVRIDRTRKLPFTVFVRALGYgTDQEIINLFGE------------------- 212
Cdd:PRK00405 160 sGKLLYSARIIPYRGSWLEFEFDPKDILYVRIDRRRKLPVTVLLRALGY-SDEEILDLFYEkeefgkeievpveyllgkv 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 213 --------------------------DERLLKTLEKDSVKSKEEGLIEVYKKLRPGEPPTVESASSLINSLFFDPKRYDL 266
Cdd:PRK00405 239 laedivdeetgevlaeandeiteeldGPYIRNTLEKDPTSSREEALVEIYRRLRPGEPPTVEAARSLLENLFFDPKRYDL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 267 AKVGRYKFNKKLslvdrivgfvaaenvvdentgeilvqegqkidketaqkiensgvksvniygedekvvkvignnfvdik 346
Cdd:PRK00405 319 SKVGRYKLNKKL-------------------------------------------------------------------- 330
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 347 ahidfnidDLNITEKVhyptlkkiletytteedikealrekigelvpKHIIIDDIIATMSYILNLPHGVGRVDDIDHLGN 426
Cdd:PRK00405 331 --------GLDEDEDV-------------------------------RVLTKEDIIATIKYLINLRNGKGEVDDIDHLGN 371
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 427 RRLRSVGELLQNQFRIGLSRMERVVRERMTIQDMDTITPQALINIRPVVAAIKEFFGSSQLSQFMDQTNPLSELTHKRRL 506
Cdd:PRK00405 372 RRVRSVGELLQNQFRIGLSRMERAVRERMSLQDLDTLTPQDLINAKPVVAAIKEFFGSSQLSQFMDQTNPLSELTHKRRL 451
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 507 SALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTYARINEYGFIEAPYRKVDKerGVVTDEIEYLTA 586
Cdd:PRK00405 452 SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATYARVNEYGFIETPYRKVVD--GKVTDEIVYLTA 529
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 587 DEEEKYVFAQANEPLDEEGRFINKRVVARlRGGDIDVVPSSEVDYVDVSPQQIVSVATAMIPFLENDDANRALMGSNMQR 666
Cdd:PRK00405 530 DEEDNYVIAQANAPLDEDGRFVDELVTAR-YKGEFVLVPPEEVDYMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQR 608
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 667 QAVPLIKTESPIIGTGMEYIAAKDSGTVVVAKNDGIVERVTADKIIVKR----HSDGGKDEYKLLKFKRSNQGTCINQKP 742
Cdd:PRK00405 609 QAVPLLRPEAPLVGTGMERRVARDSGAVVVAKRDGVVEYVDASRIVVRVeeldPGEDGVDIYNLIKFQRSNQNTCINQRP 688
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 743 LVDNGDEVKAGEIIADGPSTDNGEIALGKNLLVGFMTWEGYNYEDAILLSEELVMNDVLTSIHIEEYEAEARDTKLGPEE 822
Cdd:PRK00405 689 IVKVGDRVEKGDVLADGPSTDNGELALGQNVLVAFMPWNGYNFEDAILISERLVKEDVFTSIHIEEYEIEARDTKLGPEE 768
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 823 ITRDIPNVGEDALKNLDERGIIRIGAEVTSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGIIV 902
Cdd:PRK00405 769 ITRDIPNVSEEALRNLDESGIVRIGAEVKPGDILVGKVTPKGETELTPEEKLLRAIFGEKARDVKDTSLRVPHGEEGTVI 848
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 903 DVKVFTR-ENGDELPPGVNVLVRVYIAKKRKISVGDKMAGRHGNKGVISRILPVEDMPFLEDGTPLQVVLNPLGVPSRMN 981
Cdd:PRK00405 849 DVKVFTRiEQGDELPPGVNKLVKVYIAQKRKIQVGDKMAGRHGNKGVVSRILPVEDMPYLEDGTPVDIVLNPLGVPSRMN 928
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 982 IGQVLEVHLGLAAKKLGWKVATPVFDGAKETDIAELLEECGYPVDGKLQLYDGRTGEPFDNRVTVGYMYMLKLHHLVDDK 1061
Cdd:PRK00405 929 IGQILETHLGWAAKGLGIKFATPVFDGAKEEEIKELLEEAGLPEDGKTTLYDGRTGEPFDRPVTVGYMYMLKLHHLVDDK 1008
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1062 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGIPES 1141
Cdd:PRK00405 1009 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVVGRTKVYEAIVKGENIPEPGIPES 1088
|
1210 1220
....*....|....*....|....
gi 1120097870 1142 FKVLIKELQSLCLDVKVLSENADE 1165
Cdd:PRK00405 1089 FNVLVKELQSLGLDVELLDEDGNE 1112
|
|
| RpoB |
COG0085 |
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ... |
12-1162 |
0e+00 |
|
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 439855 [Multi-domain] Cd Length: 1001 Bit Score: 2018.86 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 12 RMSFSKIDKVLEMPNLIEIQKRSYKWFLEEGLMEAFNDISPIQDYTGNLILEFVDYSLdGKPKYDQEECKERDVTYAVPL 91
Cdd:COG0085 1 RWSFAKIKEPLELPNLLEIQLDSFNWFLEEGLQEIFDEISPIEDFTGNLSLEFGDYRL-GEPKYTPEECKERDLTYAAPL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 92 KVKVRFINKETGEVKEQEVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGPYYSVQIDKTGKRLFSTTVIPNRGAWLEY 171
Cdd:COG0085 80 YVKVRLVNKETGEIKEQEVFMGDFPLMTDSGTFIINGTERVIVSQLVRSPGVYFVEEEDKSGKDLYSAKVIPSRGAWLEF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 172 ETDSNQIISVRIDRTRKLPFTVFVRALGYGTDQEIINLFGED---ERLLKTLEKDSVKSKEEGLIEVYKKLRPGEPPTVE 248
Cdd:COG0085 160 ETDKDGTIYVRIDRKRKIPVTVLLRALGLETDEEILEAFGDDpiqEYILATLEKDNTKTQEEALLEIYRKLRPGEPPTIE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 249 SASSLINSLFFDPKRYDLAKVGRYKFNKKLSLvdrivgfvaaenvvdentgeilvqegqkidketaqkiensgvksvnIY 328
Cdd:COG0085 240 RAEQLLDNLFFDPKRYDLAHVGRYKINKKLGL----------------------------------------------DV 273
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 329 GEDEKVVKVignnfvdikahidfniddlnitekvhyptlkkiletytteedikealrekigelvpkhiiiDDIIATMSYI 408
Cdd:COG0085 274 PPEDRVLTA-------------------------------------------------------------EDIVATIKYL 292
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 409 LNLPHGVGRVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDMDTITPQALINIRPVVAAIKEFFGSSQLS 488
Cdd:COG0085 293 LELHLGEREPDDIDHLGNRRVRLVGELLQNQFRVGLSRMERVVRERMTTQDVEAITPQSLINIRPVVAAIKEFFGSSQLS 372
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 489 QFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTYARINEYGFIEAPYR 568
Cdd:COG0085 373 QFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLALYARVNEYGFIETPYR 452
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 569 KVdkERGVVTDEIEYLTADEEEKYVFAQANEPLDEEGRFINKRVVARlRGGDIDVVPSSEVDYVDVSPQQIVSVATAMIP 648
Cdd:COG0085 453 KV--ENGKVTDEIEYLTADEEENYYIAQANAPLDEDGNFLEERVLVR-YRGEEVLVPPEEVDYMDVSPKQIVSVATSLIP 529
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 649 FLENDDANRALMGSNMQRQAVPLIKTESPIigtgmeyiaakdsgtvvvakndgivervtadkiivkrhsdggkDEYKLLK 728
Cdd:COG0085 530 FLEHDDANRALMGANMQRQAVPLLRPEAPL-------------------------------------------LHYPLQK 566
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 729 FKRSNQGTCINQKPLVDNGDEVKAGEIIADGPSTDNGEIALGKNLLVGFMTWEGYNYEDAILLSEELVMNDVLTSIHIEE 808
Cdd:COG0085 567 FQRSNQGTCINQRPIVRVGDRVEKGDVLADGPATDNGELALGQNLLVAFMPWEGYNYEDAIIISERLVKDDVLTSIHIEE 646
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 809 YEAEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRIGAEVTSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRD 888
Cdd:COG0085 647 YEIEARDTKLGPEEITRDIPNVSEEALRNLDEDGIIRIGAEVKGGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRD 726
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 889 TSLKVPHGESGIIVDVKVFTRENGDELPPGVNVLVRVYIAKKRKISVGDKMAGRHGNKGVISRILPVEDMPFLEDGTPLQ 968
Cdd:COG0085 727 TSLRVPHGEKGKVIDVKVFSREEGDELPPGVNKLVRVYVAQKRKIEVGDKLAGRHGNKGVISRILPQEDMPFLEDGTPVD 806
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 969 VVLNPLGVPSRMNIGQVLEVHLGLAAKKLGWKVATPVFDGAKETDIAELLEECGYPVDGKLQLYDGRTGEPFDNRVTVGY 1048
Cdd:COG0085 807 IVLNPLGVPSRMNVGQVLETHLGWAAALLGRRVATPVFDGAPEEEIRELLEKAGLPPDGKEVLYDGRTGEPFDNPVTVGY 886
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1049 MYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIV 1128
Cdd:COG0085 887 MYYLKLHHMVDDKIHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQERLTIKSDDVCGRVKVYEAIV 966
|
1130 1140 1150
....*....|....*....|....*....|....
gi 1120097870 1129 KGENIPEPGIPESFKVLIKELQSLCLDVKVLSEN 1162
Cdd:COG0085 967 KGENIPEPGIPESFKVLLKELQSLGLDVEVLSED 1000
|
|
| rpoB |
TIGR02013 |
DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit ... |
12-1158 |
0e+00 |
|
DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit of Bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit. [Transcription, DNA-dependent RNA polymerase]
Pssm-ID: 273928 [Multi-domain] Cd Length: 1065 Bit Score: 1918.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 12 RMSFSKIDKVLEMPNLIEIQKRSYKWFL----------EEGLMEAFNDISPIQDYTGNLILEFVDYSLDgKPKYDQEECK 81
Cdd:TIGR02013 5 RIDFGKIPEVLEVPNLLEIQLDSYDWFLqqdtppekrkEEGLEEVFKSIFPIEDYTGNIELEYLSYRLG-EPKYSVEECK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 82 ERDVTYAVPLKVKVRFINKE---TGEVKEQEVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGPYYSVQID--KTGKRL 156
Cdd:TIGR02013 84 ERGLTYSAPLKVKLRLINKEedgTKEIKEQDVYMGDIPLMTDRGTFIINGAERVVVSQLHRSPGVFFSSEKDttKSGKVL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 157 FSTTVIPNRGAWLEYETDSNQIISVRIDRTRKLPFTVFVRALGYGTDQEIINLFGEDERLLKTLEKDSVKSKEEGLIEVY 236
Cdd:TIGR02013 164 FSARIIPYRGSWLEFETDKKDVLYVRIDRKRKLPATVLLRALGYTIDTLILNRLGSGEYIRNTLRKDPTNSEEEALVEIY 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 237 KKLRPGEPPTVESASSLINSLFFDPKRYDLAKVGRYKFNKKLSLvdrivgfvaaenvvdentgeilvqegqkidketaqk 316
Cdd:TIGR02013 244 RKLRPGEPPTVEAARSLLENLFFDPKRYDLGRVGRYKLNKKLGL------------------------------------ 287
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 317 iensgvksvniygedekvvkvignnfvdikahidfniddlnitekvHYPTLKKILETytteedikealrekigelvpkhi 396
Cdd:TIGR02013 288 ----------------------------------------------DVPESIGVLTK----------------------- 298
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 397 iiDDIIATMSYILNLPHGVGRVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDMDTITPQALINIRPVVA 476
Cdd:TIGR02013 299 --EDIIATIKYLIKLRNGKGEIDDIDHLGNRRIRSVGELLQNQFRVGLARMERIVRERMSTQDTDTLTPQDLINAKPISA 376
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 477 AIKEFFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTYAR 556
Cdd:TIGR02013 377 AIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTYAR 456
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 557 INEYGFIEAPYRKVDKERGVVTDEIEYLTADEEEKYVFAQANEPLDEEGRFINKRVVARLRGgDIDVVPSSEVDYVDVSP 636
Cdd:TIGR02013 457 VNEYGFIETPYRKVKDGKVVVTDEIDYLTADEEDNYVIAQANAPLDENGRFVEDLVVARYRG-EITLVSPDQVDYMDVSP 535
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 637 QQIVSVATAMIPFLENDDANRALMGSNMQRQAVPLIKTESPIIGTGMEYIAAKDSGTVVVAKNDGIVERVTADKIIVKRH 716
Cdd:TIGR02013 536 KQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPLLRSEAPLVGTGMEAKVARDSGAVIVAKRGGVVEYVDAKRIVIRYD 615
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 717 S-----DGGKDEYKLLKFKRSNQGTCINQKPLVDNGDEVKAGEIIADGPSTDNGEIALGKNLLVGFMTWEGYNYEDAILL 791
Cdd:TIGR02013 616 EdeeepDGGIDIYRLLKYQRSNQDTCINQRPIVSVGDRVEAGDVLADGPSTDLGELALGRNVLVAFMPWNGYNYEDAILI 695
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 792 SEELVMNDVLTSIHIEEYEAEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRIGAEVTSGDILVGKVTPKGETELTAE 871
Cdd:TIGR02013 696 SERLVKDDVFTSIHIEEYEVEARDTKLGPEEITRDIPNVSEEALRNLDENGIVRIGAEVKAGDILVGKVTPKGETELTPE 775
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 872 ERLLRAIFGEKAREVRDTSLKVPHGESGIIVDVKVFTRENGDELPPGVNVLVRVYIAKKRKISVGDKMAGRHGNKGVISR 951
Cdd:TIGR02013 776 EKLLRAIFGEKARDVRDTSLRVPPGVEGTVIDVKVFSREQGDELPPGVNKLVKVYIAQKRKIQVGDKMAGRHGNKGVVSK 855
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 952 ILPVEDMPFLEDGTPLQVVLNPLGVPSRMNIGQVLEVHLGLAAKKLGWK---VATPVFDGAKETDIAELLEECGYPVDGK 1028
Cdd:TIGR02013 856 ILPIEDMPFLEDGTPVDIVLNPLGVPSRMNIGQILETHLGWAGKRLGRKgvpIATPVFDGASEEEIKEYLEKAGLPRDGK 935
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1029 LQLYDGRTGEPFDNRVTVGYMYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQE 1108
Cdd:TIGR02013 936 VRLYDGRTGEQFDRPVTVGYMYMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1015
|
1130 1140 1150 1160 1170
....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1109 ILTVKSDDVVGRVKTYEAIVKGENIPEPGIPESFKVLIKELQSLCLDVKV 1158
Cdd:TIGR02013 1016 MLTVKSDDVVGRTKAYEAIVKGENVPEPGIPESFNVLIKELQSLGLDIEL 1065
|
|
| rpoB |
CHL00207 |
RNA polymerase beta subunit; Provisional |
24-1168 |
0e+00 |
|
RNA polymerase beta subunit; Provisional
Pssm-ID: 214397 [Multi-domain] Cd Length: 1077 Bit Score: 1241.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 24 MPNLIEIQKRSYKWFLEEGLMEAFNDISPIQDYTGNLILEFV--DYSLDgKPKYDQEECKERDVTYAVPLKVKVRFINKE 101
Cdd:CHL00207 7 LPDFLEIQRTSFCWFLNEGLNEELNIFSKIFDYTGNLELLLFgkNYKLK-YPKYNLLSAKSYDSNYSIQIYLPLKFINLK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 102 TGEVKEQEVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGPYYSVQIDKTGKRLFSTTVIPNRGAWLEYETDSNQIISV 181
Cdd:CHL00207 86 TNKIKFINYLIGNLPKMTQRGTFIINGLERVIVSQIIRSPGIYFKKEIKKNSNKIYSATLIPNRGSWIKFELDKNKEIWI 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 182 RIDRTRKLPFTVFVRALGYgTDQEI-INLFGEDERLLKT--LEKDSVKSKEEGLIEVYKKLRPGEPPTVESASSLINSLF 258
Cdd:CHL00207 166 RIDKNRKKPLIIFLKALGL-TDQDIySRLTKSEFLKKLKpiLLNSNSYTNEEILLEIYKNLSPIEPATVNDANQNLFSRF 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 259 FDPKRYDLAKVGRYKFNKKLslvdrivgfvaaenvvdentgeilvqegqkidketaqkiensgvksvniygedekvvkvi 338
Cdd:CHL00207 245 FDPKNYDLGKVGRYKINNKL------------------------------------------------------------ 264
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 339 gnnfvdikahidfnidDLNITEKVhyptlkkiletytteedikealrekigelvpKHIIIDDIIATMSYILNLPHGVGRV 418
Cdd:CHL00207 265 ----------------NLNIPERV-------------------------------RNLTYEDILSIIDKLINLKINKGNF 297
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 419 DDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDMDTITPQALINIRPVVAAIKEFFGSSQLSQFMDQTNPLS 498
Cdd:CHL00207 298 DDIDHLKNRRVRSVGELLQNQFRIGLKRLERILRNRMTICDIDSLSKFNLINPKPLIALIREFFGSSQLSQYMDQTNPLS 377
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 499 ELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTYARINEYGFIEAPYRKVDKERGVVT 578
Cdd:CHL00207 378 ELTHKRRISILGPGGLDKDRISFAVRDIHPSHYGRICPIETPEGPNCGLIGSLATNARINKFGFIETPFYKVINGKVKKF 457
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 579 DEIEYLTADEEEKYVFAQANEPLDEEGRFINKRVVARLRGgDIDVVPSSEVDYVDVSPQQIVSVATAMIPFLENDDANRA 658
Cdd:CHL00207 458 GNPIYLTADSEDLYRIAPNDINLNKNNYFKKNIIPVRYKQ-EFKTVNPSKVDFIAISPIQVFSIAESLIPFLEHNDANRA 536
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 659 LMGSNMQRQAVPLIKTESPIIGTGMEYIAAKDSGTVVVAKNDGIVERVTADKIIVKrHSDGGKDEYKLLKFKRSNQGTCI 738
Cdd:CHL00207 537 LMGSNMQRQAVPLLYPEKPIVGTGYEKQIALDSGMTIISLTEGIVVSVSAYKIIIQ-DDNNRYIHYYLQKYQRSNQNTCI 615
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 739 NQKPLVDNGDEVKAGEIIADGPSTDNGEIALGKNLLVGFMTWEGYNYEDAILLSEELVMNDVLTSIHIEEYEAEARDTKL 818
Cdd:CHL00207 616 NYRPIVWVGEKINIGQILADGSDIDNSELALGQNVLVAYMPWEGYNFEDAILINKRLVYEDLFTSIHIEKYEIELRQTKL 695
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 819 GPEEITRDIPNVGEDALKNLDERGIIRIGAEVTSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGES 898
Cdd:CHL00207 696 GSEEITRNIPNVSEYSLKNLDENGIISIGSKVLAGDILVGKITPKGESDQLPEGKLLRAIFGEKAKDVKDTSLRMPNGGY 775
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 899 GIIVDVKVFTRENGDELPPGVNVLVRVYIAKKRKISVGDKMAGRHGNKGVISRILPVEDMPFLEDGTPLQVVLNPLGVPS 978
Cdd:CHL00207 776 GRVIKVEIFSRSKGDELKFGYYLKIRVFIAQIRKIQVGDKLAGRHGNKGIISRILPRQDMPYLPDGTPPDIILNPLGVPS 855
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 979 RMNIGQVLEVHLGLAAKKLGWKVATPVFD-----GAKETDIAELLEECGYPVD----------GKLQLYDGRTGEPFDNR 1043
Cdd:CHL00207 856 RMNVGQLFECLLGLAGDNLNKRFKILPFDemygsEYSRILINNKLNQASIKNNeywlfnsyhpGKMVLRDGRTGYKFKNP 935
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1044 VTVGYMYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKT 1123
Cdd:CHL00207 936 VTVGIAYMLKLIHLVDDKIHARTTGPYSLVTQQPLGGKAQHGGQRFGEMEVWALEAFGAAYTLKELLTIKSDDMQGRNET 1015
|
1130 1140 1150 1160 1170
....*....|....*....|....*....|....*....|....*....|.
gi 1120097870 1124 YEAIVKGENIPEPGIPESFKVLIKELQSLCLDVKV------LSENADEIEI 1168
Cdd:CHL00207 1016 LNAIVKGQPIPKPGTPESFKVLMRELQSLGLDIEAykienfLEGQRLEIEI 1066
|
|
| rpoB |
CHL00001 |
RNA polymerase beta subunit |
13-1170 |
0e+00 |
|
RNA polymerase beta subunit
Pssm-ID: 214330 [Multi-domain] Cd Length: 1070 Bit Score: 1216.67 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 13 MSFSKIDKVLEMPNLIEIQKRSYKWFLEEGLMEAFNDISPIQDYTGNLILEFV--DYSLDgKPKYDQEECKERDVTYAVP 90
Cdd:CHL00001 1 MLRDGNEGMSTIPGFNQIQFEGFCRFIDQGLTEELSKFPKIEDTDQEIEFQLFveTYQLV-EPLIKERDAVYESLTYSSE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 91 LKVKVRFINKETGEVKEQEVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGPYYSVQIDKTGKRLFSTTVIPNRGAWLE 170
Cdd:CHL00001 80 LYVPAGLIWKKSRDMQEQTVFIGNIPLMNSLGTFIINGIYRVVINQILRSPGIYYRSELDHNGISVYTGTIISDWGGRLE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 171 YETDSNQIISVRIDRTRKLPFTVFVRALGYgTDQEIINLFGEDERLLKTL---EKDSVKSKEEGLIEVYKKL--RPGEPP 245
Cdd:CHL00001 160 LEIDRKARIWARVSRKQKISILVLLSAMGL-NLREILDNVCYPEIFLSFLndkEKKKIGSKENAILEFYQQFacVGGDPV 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 246 TVESASSLINSLFFDpKRYDLAKVGRYKFNKKLSLvdrivgfvaaenvvdentgeilvqegqkidketaqkiensgvksv 325
Cdd:CHL00001 239 FSESLCKELQKKFFQ-QRCELGRIGRRNMNRKLNL--------------------------------------------- 272
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 326 niygedekvvkvignnfvDIKAHIDFniddlnitekvhyptlkkiletytteedikealrekigeLVPKhiiidDIIATM 405
Cdd:CHL00001 273 ------------------DIPENNTF---------------------------------------LLPQ-----DVLAAA 290
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 406 SYILNLPHGVGRVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERM--TIQDMDTITPQALINIRPVVAAIKEFFG 483
Cdd:CHL00001 291 DYLIGMKFGMGTLDDIDHLKNKRIRSVADLLQDQFGLALNRLENAVRGTIcgAIRRKLIPTPQNLVTSTPLTTTYESFFG 370
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 484 SSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTYARINEYGFI 563
Cdd:CHL00001 371 SHPLSQFLDQTNPLTEIVHGRKLSSLGPGGLTGRTASFRVRDIHPSHYGRICPIDTSEGINAGLIGSLAIHARIGHWGSL 450
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 564 EAPYRKV---DKERGVVtdeieYLTADEEEKYVFAQANEPLDEEGRFINKRVVARLRGgDIDVVPSSEVDYVDVSPQQIV 640
Cdd:CHL00001 451 ESPFYEIserSKEERMV-----YLSPSEDEYYMIAAGNSLALNQGIQEEQVVPARYRQ-EFLTIAWEQIHLRSIFPFQYF 524
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 641 SVATAMIPFLENDDANRALMGSNMQRQAVPLIKTESPIIGTGMEYIAAKDSGTVVVAKNDGIVERVTADKIIVKrhSDGG 720
Cdd:CHL00001 525 SIGASLIPFLEHNDANRALMGSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVVAIAEHEGKIIYTDTDKIILS--GNGD 602
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 721 KDEYKLLKFKRSNQGTCINQKPLVDNGDEVKAGEIIADGPSTDNGEIALGKNLLVGFMTWEGYNYEDAILLSEELVMNDV 800
Cdd:CHL00001 603 TLSIPLVMYQRSNKNTCMHQKPQVRRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDI 682
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 801 LTSIHIEEYEAEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRIGAEVTSGDILVGKVTPK--GETELTAEERLLRAI 878
Cdd:CHL00001 683 YTSFHIRKYEIQTHVTSQGPERITKEIPHLEAHLLRNLDKNGIVMLGSWVETGDILVGKLTPQeaEESSYAPEGRLLRAI 762
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 879 FGEKAREVRDTSLKVPHGESGIIVDVKVFTRENGDELPPGVnvlVRVYIAKKRKISVGDKMAGRHGNKGVISRILPVEDM 958
Cdd:CHL00001 763 FGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPET---IHVYILQKREIQVGDKVAGRHGNKGIISKILPRQDM 839
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 959 PFLEDGTPLQVVLNPLGVPSRMNIGQVLEVHLGLAAKKLG--WKVaTPvFDGAKETD------IAELLE----------- 1019
Cdd:CHL00001 840 PYLQDGTPVDMVLNPLGVPSRMNVGQIFECLLGLAGDLLNrhYRI-AP-FDERYEQEasrklvFSELYEaskqtanpwvf 917
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1020 ECGYPvdGKLQLYDGRTGEPFDNRVTVGYMYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1099
Cdd:CHL00001 918 EPEYP--GKSRLFDGRTGDPFEQPVTIGKAYILKLIHQVDDKIHARSSGPYALVTQQPLRGRSKQGGQRVGEMEVWALEG 995
|
1130 1140 1150 1160 1170 1180 1190
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1120097870 1100 YGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEP-GIPESFKVLIKELQSLCLDVK--VLSENADEIEIKE 1170
Cdd:CHL00001 996 FGVAYILQEMLTYKSDHIRARQEVLGAIITGGTIPKPeDAPESFRLLVRELRSLALELNhfLVSEKNFQINRKE 1069
|
|
| PRK09603 |
PRK09603 |
DNA-directed RNA polymerase subunit beta/beta'; |
1-1172 |
0e+00 |
|
DNA-directed RNA polymerase subunit beta/beta';
Pssm-ID: 181983 [Multi-domain] Cd Length: 2890 Bit Score: 1128.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1 MPHPVKVGKGTRMSFSKIDKVLEMPNLIEIQKRSYKWFL------EEGLMEAFNDISPIQDYTGNLILEFVDYSLdGKPK 74
Cdd:PRK09603 1 MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLyskdgkESGIEKVFKSIFPIQDEHNRITLEYAGCEF-GKSK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 75 YDQEECKERDVTYAVPLKVKVRFI----NKETGE------VKEQEVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGPY 144
Cdd:PRK09603 80 YTVREAMERGITYSIPLKIKVRLIlwekDTKSGEkngikdIKEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 145 YSVQIDKT--GKRLFSTTVIPNRGAWLEYETDSNQIISVRIDRTRKLPFTVFVRALGYgTDQEIINLFgedERLLKtlek 222
Cdd:PRK09603 160 FKEEESSTslNKLIYTGQIIPDRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDY-QKQDIIKMF---YPLVK---- 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 223 dsVKSKEEGLIEVYKKLRPGEPPTVESASSLINSLFFDPKRYDLAKVGRYKfNKKLSLV----DRIVGFVAAENVVDENt 298
Cdd:PRK09603 232 --VRYENDKYLIPFASLDANQRMEFDLKDPQGKIILLAGKKLTSRKIKELK-ENHLEWVeypmDILLNRHLAEPVMVGK- 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 299 gEILVQEGQKIDKETAQKIENSGVKSVNI-----YGEDEKVVKVIGNNFVDIKA-HIDFNIDDLN--------------- 357
Cdd:PRK09603 308 -EVLLDMLTQLDKNKLEKIHDLGVQEFVIindlaLGHDASIIHSFSADSESLKLlKQTEKIDDENalaairihkvmkpgd 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 358 -ITEKVHYPTLKKIL---ETYTTEEDIKEALREKIGELVPKHIII---DDIIATMSYILNLPHGVGRVDDIDHLGNRRLR 430
Cdd:PRK09603 387 pVTTEVAKQFVKKLFfdpERYDLTMVGRMKMNHKLGLHVPDYITTlthEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIR 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 431 SVGELLQNQFRIGLSRMERVVRERMTIQD--MDTITPQALINIRPVVAAIKEFFGSSQLSQFMDQTNPLSELTHKRRLSA 508
Cdd:PRK09603 467 AVGELLANELHSGLVKMQKTIKDKLTTMSgaFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTHKRRLSA 546
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 509 LGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTYARINEYGFIEAPYRKVdkERGVVTDEIEYLTADE 588
Cdd:PRK09603 547 LGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGFIEAPYKKV--VDGKVVGETIYLTAIQ 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 589 EEKYVFAQANEPLDEEGRFINKRVVARLrGGDIDVVPSSEVDYVDVSPQQIVSVATAMIPFLENDDANRALMGSNMQRQA 668
Cdd:PRK09603 625 EDSHIIAPASTPIDEEGNILGDLIETRV-EGEIVLNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQA 703
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 669 VPLIKTESPIIGTGMEYIAAKDSGTVVVAKNDGIVERVTADKIIVKRHSDGGK--DEYKLLKFKRSNQGTCINQKPLVDN 746
Cdd:PRK09603 704 VPLLRSDAPIVGTGIEKIIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAyiDAYSLQKNLRTNQNTSFNQVPIVKV 783
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 747 GDEVKAGEIIADGPSTDNGEIALGKNLLVGFMTWEGYNYEDAILLSEELVMNDVLTSIHIEEYEAEARDTKLGPEEITRD 826
Cdd:PRK09603 784 GDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDIFTSTHIYEKEVDARELKHGVEEFTAD 863
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 827 IPNVGEDALKNLDERGIIRIGAEVTSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGIIVDVKV 906
Cdd:PRK09603 864 IPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKV 943
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 907 FTR----------------------------------------------------------------------------- 909
Cdd:PRK09603 944 FTKkgyekdarvlsayeeekakldmehfdrltmlnreellrvssllsqaileepfshngkdykegdqipkeeiasinrft 1023
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 910 -----------------------------------------ENGDELPPGVNVLVRVYIAKKRKISVGDKMAGRHGNKGV 948
Cdd:PRK09603 1024 laslvkkyskevqnhyeitknnfleqkkvlgeeheeklsilEKDDILPNGVIKKVKLYIATKRKLKVGDKMAGRHGNKGI 1103
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 949 ISRILPVEDMPFLEDGTPLQVVLNPLGVPSRMNIGQVLEVHLGLAAKKLG------------------------------ 998
Cdd:PRK09603 1104 VSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQILEMHLGLVGKEFGkqiasmledktkdfakelrakmleianain 1183
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 999 ------------------------W----KVATPVFDGAKETDIAELLEECGYPVDGKLQLYDGRTGEPFDNRVTVGYMY 1050
Cdd:PRK09603 1184 ekdpltihalencsdeelleyakdWskgvKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVGYMY 1263
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1051 MLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKG 1130
Cdd:PRK09603 1264 MIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLKEMLTIKSDDIRGRENAYRAIAKG 1343
|
1370 1380 1390 1400
....*....|....*....|....*....|....*....|....*...
gi 1120097870 1131 ENIPEPGIPESFKVLIKELQSLCLDVKVLSENADE------IEIKEND 1172
Cdd:PRK09603 1344 EQVGESEIPETFYVLTKELQSLALDINIFGDDVDEdgapkpIVIKEDD 1391
|
|
| PRK14844 |
PRK14844 |
DNA-directed RNA polymerase subunit beta/beta'; |
12-1167 |
0e+00 |
|
DNA-directed RNA polymerase subunit beta/beta';
Pssm-ID: 173305 [Multi-domain] Cd Length: 2836 Bit Score: 1034.19 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 12 RMSFSK-IDKVLEMPNLIEIQKRSYKWFL-----EEGLMEAFNDISPIQDYTGNLILEFVDYSLDgKPKYDQEECKERDV 85
Cdd:PRK14844 16 RVSYSRsIDLKDSLLDLVKVQKESYDSFTpknkgNERLEVIFHTIFPINDPLHRATIEFISCRVD-DPKYDESECIKRGI 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 86 TYAVPLKVKVRFIN-------------KETGE----------VKEQEVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPG 142
Cdd:PRK14844 95 TFSAQVIASIRLVImqdgisldeyksiKESGDhsklatviksIEEQEVHFCELPMMTDKGTFIINGVEKVIVSQMHRSPG 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 143 PYYSVQIDKT---GKRLFSTTVIPNRGAWLEYETDSNQIISVRIDRTRKLPFTVFVRALGYgTDQEIINLFGEDERLLKt 219
Cdd:PRK14844 175 VFFDSDKGKTynsGKLIYSARVIPYRGSWLDIEFDVKDHLYFRIDRKRKLPISVLLKALGL-SNNDILDRFYEKIKYIK- 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 220 lEKDS-----VKSKEEGlIEVYKKLRPGEPPTVESASSLINSLFfDPKRYDlakvgrYKFNKKLSLVDRIVGFVAAENVV 294
Cdd:PRK14844 253 -HKDGwkvpfVPDKFKG-VRLPFDLMDVEGNVLLKANVRITSRL-AKKLYD------NELKEYLVPFDSICGLFLAEDLI 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 295 DENTGEILVQEGQKIDKETAQKIENSGVKSVNIYGEDEKVVKVIGNNFVDIKAHIDFNiDDLNITEKVHYPTLKKILET- 373
Cdd:PRK14844 324 DSASSTKILSAGESIKLEDIKKLELLSIDEISVLNIDNLSVGPYILNTLFLDENMSYQ-DALYEIYKVLRPGEVPVLEIv 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 374 --------YTTEE-DIKEALREKIGELVPKH-------IIIDDIIATMSYILNLPHGVGRVDDIDHLGNRRLRSVGELLQ 437
Cdd:PRK14844 403 eeffrnlfFSPEYyDLSNIGRLKLNSYLGLNydedltvLTHEDIIEIVRKIVLLRDGQGSVDDIDHLGNRRVRSVGEFIE 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 438 NQFRIGLSRMERVVRERMTIQDMDTITPQALINIRPVVAAIKEFFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRE 517
Cdd:PRK14844 483 NQFRTGLLKLERAVVDSMSTSSLDKVSPSDFINPKVLTNVLRDFFNSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRE 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 518 RAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTYARINEYGFIEAPYRKVDKErgVVTDEIEYLTADEEEKYVFAQA 597
Cdd:PRK14844 563 RAGFEVRDVHPTHYGRICPIETPEGQNIGLINSLAIYARINKYGFIESPYRKVVNR--VVTDQIEYLSAIDEGLYYIADT 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 598 NEPLDEEGRFINKRVVARLrGGDIDVVPSSEVDYVDVSPQQIVSVATAMIPFLENDDANRALMGSNMQRQAVPLIKTESP 677
Cdd:PRK14844 641 SAKLDENNCFVDDMLYCRY-AGSFVMVSSDQVSYIDVSPKQVISVAASLIPFLENDDANRALMGSNMQRQAVPLLKPTAP 719
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 678 IIGTGMEYIAAKDSGTVVVAKNDGIVERVTADKIIVKRHSDG-----GKDEYKLLKFKRSNQGTCINQKPLVDNGDEVKA 752
Cdd:PRK14844 720 LVATGMESFVASGSGAVVLAKRDGIVDSSDSNSIVIRAFDKErvnylDVDIYHLRKFQRSNHNTCINQKPLVCVGDYVKE 799
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 753 GEIIADGPSTDNGEIALGKNLLVGFMTWEGYNYEDAILLSEELVMNDVLTSIHIEEYEAEARDTKLGPEEITRDIPNVGE 832
Cdd:PRK14844 800 GDVIADGPAINSGELALGQNLLVAFMSWQGYNFEDSIIISSEVVKKDLFTSIHIEEFECVVHDTPLGSEKITRAIPGVNE 879
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 833 DALKNLDERGIIRIGAEVTSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGIIVDVKVFTR--- 909
Cdd:PRK14844 880 ENLYHLDDSGIVKIGTRVGPGYILVGKVTPKPSLSLPPETKLLMTIFGEKSFDCADSSLYTSPDVEGTVIDVQVFTRrgv 959
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 910 -EN----------------------------------------------------------------------------- 911
Cdd:PRK14844 960 eENerallikqkeindfekerdyiinvtseyfydelkkllinsgsqdrekfdsiereqwwgiglknqsiseqvkslkkdf 1039
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 912 --------------------GDELPPGVNVLVRVYIAKKRKISVGDKMAGRHGNKGVISRILPVEDMPFLEDGTPLQVVL 971
Cdd:PRK14844 1040 dekvshaiaqfkrkveklheGYDLPQGVSMSVKVFIAVKHSLQPGDKMAGRHGNKGVISRVVPVEDMPYLEDGTPVDIIL 1119
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 972 NPLGVPSRMNIGQVLEVHLGLAAKKLGWK--------------------------------------------------- 1000
Cdd:PRK14844 1120 NPLGVPSRMNVGQILETHVGWACKKLGEKvgnildeinkiksafckgirslnddnftkfaaayldnkkienidddeitas 1199
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1001 ------------------------------------------------------------------------VATPVFDG 1008
Cdd:PRK14844 1200 vlntpnknalndelnelvenylnscksaysnlrnflievyscgsnvsicnnirdisdnnliefarklrdgipVAAPVFEG 1279
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1009 AKETDIAELLEECGYPVDGKLQLYDGRTGEPFDNRVTVGYMYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQR 1088
Cdd:PRK14844 1280 PKDEQIAKLFELAGLDNSGQAVLYDGCSGEKFDRKVTVGYMYMLKLHHLVDGKIHARSVGPYSLVTQQPLGGKSHFGGQR 1359
|
1370 1380 1390 1400 1410 1420 1430
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1120097870 1089 FGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGIPESFKVLIKELQSLCLDVKvLSENADEIE 1167
Cdd:PRK14844 1360 FGEMECWALQAYGAAYTLQEMLTVKSDDINGRVKIYESIIKGDSNFECGIPESFNVMIKELRSLCLNVD-LKQNDVVIE 1437
|
|
| RNA_pol_B_RPB2 |
cd00653 |
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ... |
27-1158 |
0e+00 |
|
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.
Pssm-ID: 238353 [Multi-domain] Cd Length: 866 Bit Score: 989.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 27 LIEIQKRSYKWFLEEGLMEAFNDISPIQDYT--GNLILEFVDYSLdGKP---------KYDQEECKERDVTYAVPLKVKV 95
Cdd:cd00653 1 LVKQQIDSFNYFLNVGLQEIVKSIPPITDTDddGRLKLKFGDIYL-GKPkveeggvtrKLTPNECRLRDLTYSAPLYVDI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 96 RFINKETGEVKEQEVFMGDFPLMTE------------------------KGTFIINGAERVIVSQLVRSPGPYYsvQIDK 151
Cdd:cd00653 80 RLTVNDKGKIKEQEVFIGEIPIMLRsklcnlngltpeeliklgecpldpGGYFIINGTEKVIINQEQRSPNVII--VEDS 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 152 TGKRLFSTTVIPN----RGAWLEYETDS-NQIISVRIDRTRKlpftvfvralgygtdqeiinlfgederllktlekdsvk 226
Cdd:cd00653 158 KGKRIYTKTSIPSyspyRGSWLEVKSDKkKDRIYVRIDLKRQ-------------------------------------- 199
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 227 skEEGLIEVYKKLRpgepptvesasslinslffdpkrydlakvgrykfnkklslvdrivgfvaaenvvdentgeilvqeg 306
Cdd:cd00653 200 --EEALKYIGKRFE------------------------------------------------------------------ 211
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 307 qkidketaqkiensgvksvniygedekvvkvignnfvdikahidfniddlnitekvhyptlkkiletytteedikealre 386
Cdd:cd00653 --------------------------------------------------------------------------------
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 387 kigelvpkhiiidDIIATMSYILNLPHGVGRVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDM--DTIT 464
Cdd:cd00653 212 -------------DLIYMIRKLILLVLGKGKLDDIDHLGNKRVRLAGELLQNLFRSGLKRLEREVKEKLQKQLSkkKDLT 278
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 465 PQALINIRPVVAAIKEFFGSSQ------------LSQFMDQTNPLSELTHKRRLSAlgpGGLSRERAGFEVRDVHHSHYG 532
Cdd:cd00653 279 PQLLINSKPITSGIKEFLATGNwgskrflmqrsgLSQVLDRLNPLSELSHKRRISS---LGLFRERKGFEVRDLHPSHWG 355
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 533 RMCPIETPEGPNIGLINSLSTYARINeyGFIEAPYRKVDKErgvvtdeieyltadeeekyvfaqanepldeegrfinkrv 612
Cdd:cd00653 356 RICPIETPEGENCGLVKNLALMARIS--GRIERPYRIVEKE--------------------------------------- 394
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 613 varlrggdidvvpsseVDYVDVSPQQIVSVATAMIPFLENDDANRALMGSNMQRQAVPLIKTESPIIGTGMEYIaakdsg 692
Cdd:cd00653 395 ----------------VTHIEISPSQILSVAASLIPFPEHNQSPRNLYQSNMQKQAVGTPALNQQYRMDTKLYL------ 452
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 693 tvvvakndgivervtadkiivkrhsdggkdeykLLKfkrsnqgtciNQKPLVDNGDEvkagEIIAdgpstdNGEIALGKN 772
Cdd:cd00653 453 ---------------------------------LLY----------PQKPLVGTGIE----EYIA------FGELPLGQN 479
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 773 LLVGFMTWEGYNYEDAILLSEELVMNDVLTSIHIEEYEAEARDTKLGPEEITR-DIPNVGEDALKNLDERGIIRIGAEVT 851
Cdd:cd00653 480 AIVAVMSYSGYNFEDAIIINKSSVDRGFFRSIHYKKYEIELRKTKNGPEEITRgDIPNVSEEKLKNLDEDGIIRPGARVE 559
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 852 SGDILVGKVTPKGETELTAeerllraIFGEKAREVRDTSLKVPHGESGIIVDVKVFTREngdeLPPGVNVLVRVYIAKKR 931
Cdd:cd00653 560 PGDILVGKITPKGETESTP-------IFGEKARDVRDTSLKYPGGEKGIVDDVKIFSRE----LNDGGNKLVKVYIRQKR 628
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 932 KISVGDKMAGRHGNKGVISRILPVEDMPFLEDGTPLQVVLNPLGVPSRMNIGQVLEVHLGLAAKKLGWKVATPVFDGAKE 1011
Cdd:cd00653 629 KPQIGDKFASRHGQKGVISKILPQEDMPFTEDGIPPDIILNPHGFPSRMTIGQLLESLLGKAGALLGKFGDATPFDGAEE 708
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1012 TDIAELLEECGYPVDGKLQLYDGRTGEPFDNRVTVGYMYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGE 1091
Cdd:cd00653 709 EDISELLGEAGLNYYGKEVLYDGRTGEPLEAPIFVGPVYYQRLKHMVDDKIHARSTGPYSLLTRQPLKGRSRGGGQRFGE 788
|
1130 1140 1150 1160 1170 1180 1190
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1120097870 1092 MEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIV----------KGENIPEPGIPESFKVLIKELQSLCLDVKV 1158
Cdd:cd00653 789 MERDALIAHGAAYLLQERLTIKSDDVVARVCVKCGIIlsanlcrlckKGTNISKVGIPYAFKLLFQELQSMNIDPRL 865
|
|
| RNA_pol_Rpb2_6 |
pfam00562 |
RNA polymerase Rpb2, domain 6; RNA polymerases catalyze the DNA dependent polymerization of ... |
696-1083 |
0e+00 |
|
RNA polymerase Rpb2, domain 6; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain and the wall domain. The hybrid binding domain binds the nascent RNA strand / template DNA strand in the Pol II transcription elongation complex. This domain contains the important structural motifs, switch 3 and the flap loop and binds an active site metal ion. This domain is also involved in binding to Rpb1 and Rpb3. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 2 (DRII).
Pssm-ID: 459854 [Multi-domain] Cd Length: 371 Bit Score: 564.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 696 VAKNDGIVERVTADKIIVKrhSDGGKDE---YKLLKFKRSNQGT---CINQKPLVDNGDeVKAGeiiadgpstDNGEIAL 769
Cdd:pfam00562 1 VASLIPFVDHNQSPRNTYQ--CAMGKQAmgiYTLNKFYRSDQNTyvlCYPQKPLVKTGA-VEAG---------GFGELPL 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 770 GKNLLVGFMTWEGYNYEDAILLSEELVMNDVLTSIHIEEYEAeaRDTKLGP-EEITRDIPNVGEDALKNLDERGIIRIGA 848
Cdd:pfam00562 69 GQNAIVAVMSYTGYNQEDAIIINKSSVDRGFFTSIHIKEIEA--RKTKLGPiEEITRDIPNVSEEALKKLDEDGIVRVGA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 849 EVTSGDILVGKVtpkGETELTaeeRLLRAIFGEKAREVRDTSLKVPHGESGIIVDVKVFTrengdeLPPGVNVLVRVYIA 928
Cdd:pfam00562 147 EVKPGDILVGKV---GPTELT---KLLRAIFGEKARDVKDTSLKVPPGEEGVVDDVIVFE------LPPGGIKMVKVYIR 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 929 KKRKISVGDKMAGRHGNKGVISRILPVEDMPFLEDGTPLQVVLNPLGVPSRMNIGQVLEVHLGLAAKKLGWKVATPVFDG 1008
Cdd:pfam00562 215 QKRKPEVGDKFASRHGQKGVVSRILPQEDMPFTEDGIPPDIILNPHGVPSRMTIGQLLETHLGKAAALLGVFVDATPFDG 294
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1120097870 1009 AKET--DIAELLEECGYPVDGKLQLYDGRTGEPFDNRVTVGYMYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQ 1083
Cdd:pfam00562 295 ASTEveDIGELLEKAGYNYYGKEVLYDGRTGEPFEAPIFVGPIYYQKLKHMVDDKIHARSTGPYSLLTRQPLGGRAR 371
|
|
| PRK08565 |
PRK08565 |
DNA-directed RNA polymerase subunit B; Provisional |
34-1159 |
4.50e-125 |
|
DNA-directed RNA polymerase subunit B; Provisional
Pssm-ID: 236291 [Multi-domain] Cd Length: 1103 Bit Score: 413.20 E-value: 4.50e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 34 SYKWFLEEGLMEAFNDISPIQDYTGNLILEFVDYSLdGKPKYDQE----------ECKERDVTYAVPLKVKVRFINkETG 103
Cdd:PRK08565 21 SYNDFIERGLQEIVDEFGEIKTEIPGLKIVLGKIRV-GEPEIKEAdgserpitpmEARLRNLTYAAPLYLTMIPVE-NGI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 104 EVKEQEVFMGDFPLM----------------TEKGT--------FIINGAERVIVSQ--------LVRSPGPYYSV-QID 150
Cdd:PRK08565 99 EYEPEEVKIGDLPIMvkskicplsglspdelIEIGEdpkdpggyFIINGSERVIVSQedlapnrvLVDKGEAGSSItHTA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 151 KTgkrlFSTTVIPNRGAWLEYETDSnqIISVRIDRTR-KLPFTVFVRALGYGTDQEIINLFGEDER----LLKTLEKDS- 224
Cdd:PRK08565 179 KV----ISSRAGYRAQVTVERRKDG--TIYVSFPAVPgKIPFVILMRALGLETDRDIVYAVSLDPEiqqeLLPSLEQASs 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 225 -VKSKEEGLIEVYKKLRPGEPPTVesasslinslffdpkrydlakvgrykfnkklslvdRIvgfvaaenvvdentgeilv 303
Cdd:PRK08565 253 iAATVEDALDYIGKRVAIGQPREY-----------------------------------RI------------------- 278
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 304 qegqkidketaqkiensgvksvniygedEKVVKVIGNNFVdikAHIDfniddlnitekvhyptlkkiletyTTEED-IKE 382
Cdd:PRK08565 279 ----------------------------ERAEQILDKYLL---PHLG------------------------TSPEDrIKK 303
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 383 ALRekIGELVPKhiiiddiiatmsyILNLPHGVGRVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQ---- 458
Cdd:PRK08565 304 AYF--LGQMASK-------------LLELYLGRREPDDKDHYANKRLRLAGDLLAELFRVAFKQLVKDLKYQLEKSyarg 368
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 459 ---DMDTITPQALIN--IRPVVAAIKEFFGSSQLSQFMDQTNPLSELTHKRRLsaLGPggLSRERAGFEVRDVHHSHYGR 533
Cdd:PRK08565 369 rklDLRAIVRPDIITerIRHALATGNWVGGRTGVSQLLDRTNYLSTLSHLRRV--VSP--LSRGQPHFEARDLHGTQWGR 444
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 534 MCPIETPEGPNIGLINSLSTYARI--------------------------NEY-------------GFIEAPYRKVDKER 574
Cdd:PRK08565 445 ICPFETPEGPNCGLVKNLALMAQIsvgvdeeeveeilyelgvvpveeareEEYiswsrvylngrliGYHPDGEELAEKIR 524
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 575 -----GVVTDEIE---YLTADEEEKYVFAQANE---PL--DEEGRF-INKRVVARLRGGDI---DVVPSSEVDYVD---- 633
Cdd:PRK08565 525 elrrsGKISDEVNvayIETGEINEVYVNCDSGRvrrPLivVENGKPkLTREHVEKLKKGELtfdDLVKMGVIEYLDaeee 604
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 634 ------VSPQQ--------------IVSVATAMIPFLENDDANRALMGSNMQRQAVPL------IKTESPiiGTGMEYia 687
Cdd:PRK08565 605 enayvaLDPEDltpehthleiwppaILGITASIIPYPEHNQSPRNTYQAAMAKQSLGLyaanfrIRTDTR--GHLLHY-- 680
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 688 akdsgtvvvakndgivervtadkiivkrhsdggkdeykllkfkrsnqgtciNQKPLVdngdEVKAGEIIA--DGPStdng 765
Cdd:PRK08565 681 ---------------------------------------------------PQRPLV----QTRALEIIGynDRPA---- 701
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 766 eialGKNLLVGFMTWEGYNYEDAILLSEELVMNDVLTSIHIEEYEAEARDTKLGPE-EITRDIPNV----GEDALKNLDE 840
Cdd:PRK08565 702 ----GQNAVVAVLSYTGYNIEDAIIMNKASIERGLARSTFFRTYETEERKYPGGQEdKIEIPEPNVrgyrGEEYYRKLDE 777
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 841 RGIIRIGAEVTSGDILVGKVTPKGETELTAEERLlraifGEKARevRDTSLKVPHGESGIIVDVKVFTRENGdelppgvN 920
Cdd:PRK08565 778 DGIVSPEVEVKGGDVLIGKTSPPRFLEELEELSL-----GLQER--RDTSVTVRHGEKGIVDTVLITESPEG-------N 843
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 921 VLVRVYIAKKRKISVGDKMAGRHGNKGVISRILPVEDMPFLEDGTPLQVVLNPLGVPSRMNIGQVLEVHLGLAAKKLGWK 1000
Cdd:PRK08565 844 KLVKVRVRDLRIPELGDKFASRHGQKGVIGMLVPQEDMPFTEDGIVPDLIINPHAIPSRMTVGQLLESIAGKVAALEGRF 923
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1001 V-ATPvFDGAKETDIAELLEECGYPVDGKLQLYDGRTGEPFDNRVTVGYMYMLKLHHLVDDKIHARSTGPYSLVTQQPLG 1079
Cdd:PRK08565 924 VdATP-FYGEPEEELRKELLKLGYKPDGTEVMYDGRTGEKIKAPIFIGVVYYQKLHHMVADKIHARARGPVQILTRQPTE 1002
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1080 GKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVV--------------GRVKTYEAIVKGE--NIPEPGIPESFK 1143
Cdd:PRK08565 1003 GRAREGGLRFGEMERDCLIGHGAAMLLKERLLDSSDKTTiyvcelcghiawydRRKNKYVCPIHGDkgNISPVEVSYAFK 1082
|
1290
....*....|....*.
gi 1120097870 1144 VLIKELQSLCLDVKVL 1159
Cdd:PRK08565 1083 LLLQELMSMGISPRLK 1098
|
|
| rpoB_arch |
TIGR03670 |
DNA-directed RNA polymerase subunit B; This model represents the archaeal version of ... |
581-1157 |
1.13e-90 |
|
DNA-directed RNA polymerase subunit B; This model represents the archaeal version of DNA-directed RNA polymerase subunit B (rpoB) and is observed in all archaeal genomes.
Pssm-ID: 274713 [Multi-domain] Cd Length: 599 Bit Score: 305.03 E-value: 1.13e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 581 IEYLTADEEEKYVFAQANEPLdeegrfinkrvvarlrggdidvvpSSEVDYVDVSPQQIVSVATAMIPFLENDDANRALM 660
Cdd:TIGR03670 92 IEYLDAEEEENAYIALDPEEL------------------------TPEHTHLEIDPSAILGIIASTIPYPEHNQSPRNTM 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 661 GSNMQRQAVPLIKTESPIigtgmeyiaakdsgtvvvakndgiveRVTADKiivkrHsdggkdeykLLKFKrsnqgtcinQ 740
Cdd:TIGR03670 148 GAAMAKQSLGLYAANYRI--------------------------RLDTRG-----H---------LLHYP---------Q 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 741 KPLVdngdEVKAGEIIA--DGPStdngeialGKNLLVGFMTWEGYNYEDAILLSEELVMNDVLTSIHIEEYEAEARDTKL 818
Cdd:TIGR03670 179 KPLV----KTRVLELIGydDRPA--------GQNFVVAVMSYEGYNIEDALIMNKASIERGLARSTFFRTYEAEERRYPG 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 819 GPE-EITRDIPNV----GEDALKNLDERGIIRIGAEVTSGDILVGKVTPKgeteltaeeRLL--RAIFGEKAREVRDTSL 891
Cdd:TIGR03670 247 GQEdRFEIPEPDVrgyrGEEAYKHLDEDGIVYPEVEVKGGDVLIGKTSPP---------RFLeeLREFGLVTERRRDTSV 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 892 KVPHGESGIiVDvKVFTRENGDElppgvNVLVRVYIAKKRKISVGDKMAGRHGNKGVISRILPVEDMPFLEDGTPLQVVL 971
Cdd:TIGR03670 318 TVRHGEKGI-VD-KVIITETEEG-----NKLVKVRVRDLRIPELGDKFASRHGQKGVIGMIVPQEDMPFTEDGIVPDLII 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 972 NPLGVPSRMNIGQVLEVHLGLAAKKLGWKV-ATPvFDGAKETDIAELLEECGYPVDGKLQLYDGRTGEPFDNRVTVGYMY 1050
Cdd:TIGR03670 391 NPHAIPSRMTVGQLLEMIAGKVAALEGRRVdGTP-FEGEPEEELRKELLKLGFKPDGKEVMYDGITGEKLEAEIFIGVIY 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1051 MLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVV-------GRVKT 1123
Cdd:TIGR03670 470 YQKLHHMVADKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMLLKERLLDESDKYVvyvcencGHIAW 549
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 1120097870 1124 YEAI-------VKGE--NIPEPGIPESFKVLIKELQSLCLDVK 1157
Cdd:TIGR03670 550 EDKRkgtaycpVCGEtgDISPVEMSYAFKLLLDELKSLGISPR 592
|
|
| PRK07225 |
PRK07225 |
DNA-directed RNA polymerase subunit B'; Validated |
573-1163 |
4.77e-86 |
|
DNA-directed RNA polymerase subunit B'; Validated
Pssm-ID: 235972 [Multi-domain] Cd Length: 605 Bit Score: 292.25 E-value: 4.77e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 573 ERGVvtdeIEYLTADEEEKYVFAQANEPLDEEGRFInkrvvarlrggdidvvpssEVDyvdvsPQQIVSVATAMIPFLEN 652
Cdd:PRK07225 94 KQGV----IEYLDAEEEENAYIAVYEEDLTEEHTHL-------------------EID-----PSLILGIGAGMIPYPEH 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 653 DDANRALMGSNMQRQAVPL------IKTESpiigtgmeyiaakdsgtvvvakndgivervtadkiivKRHsdggkdeykL 726
Cdd:PRK07225 146 NASPRITMGAGMIKQSLGLpaanykLRPDT-------------------------------------RGH---------L 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 727 LKFKrsnqgtcinQKPLVdngdEVKAGEIIA--DGPStdngeialGKNLLVGFMTWEGYNYEDAILLSEELVMNDVLTSI 804
Cdd:PRK07225 180 LHYP---------QVPLV----KTQTQEIIGfdERPA--------GQNFVVAVMSYEGYNIEDALIMNKASIERGLGRSH 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 805 HIEEYEAEARDTKLGPE-EITRDIPNV----GEDALKNLDERGIIRIGAEVTSGDILVGKVTP------KGETELTAEER 873
Cdd:PRK07225 239 FFRTYEGEERRYPGGQEdRFEIPDKDVrgyrGEEAYRHLDEDGLVNPETEVKEGDVLIGKTSPprfleePDDFGISPEKR 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 874 llraifgekarevRDTSLKVPHGESGIIVDVKVFTRENGdelppgvNVLVRVYIAKKRKISVGDKMAGRHGNKGVISRIL 953
Cdd:PRK07225 319 -------------RETSVTMRSGEEGIVDTVILTETEEG-------SRLVKVRVRDLRIPELGDKFASRHGQKGVIGLIV 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 954 PVEDMPFLEDGTPLQVVLNPLGVPSRMNIGQVLEVHLGLAAKKLGWKVATPVFDGAKETDIAELLEECGYPVDGKLQLYD 1033
Cdd:PRK07225 379 PQEDMPFTESGVVPDLIINPHAIPSRMTVGHVLEMIGGKVGSLEGRRVDGTAFSGEDEEDLREALEKLGFEHTGKEVMYD 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1034 GRTGEPFDNRVTVGYMYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVK 1113
Cdd:PRK07225 459 GITGEKIEAEIFVGVIYYQKLHHMVANKLHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMLLKERLLDE 538
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1120097870 1114 SDDVV-------GRVKTYEAI-------VKGE--NIPEPGIPESFKVLIKELQSLCLDVKVLSENA 1163
Cdd:PRK07225 539 SDKVEiyvcakcGMIAIYDKKrnrkycpICGEetDIYPVEMSYAFKLLLDELKSLGIAPRLELEDK 604
|
|
| RNA_pol_Rpb2_1 |
pfam04563 |
RNA polymerase beta subunit; RNA polymerases catalyze the DNA dependent polymerization of RNA. ... |
26-474 |
1.32e-39 |
|
RNA polymerase beta subunit; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the protrusion domain. The other lobe (pfam04561) is nested within this domain.
Pssm-ID: 367994 [Multi-domain] Cd Length: 396 Bit Score: 152.15 E-value: 1.32e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 26 NLIEIQKRSYKWFLEEGLME------AFNDISPIQDYTGN---LILEFVDYSLdGKPKYDQ----------EECKERDVT 86
Cdd:pfam04563 1 GLVRQQLDSFNEFVDNDLQKiidenaLIESEFEIQHPGENgdkLSLKFGQIRL-GKPMFDEtdgstreiypQECRLRNLT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 87 YAVPLKVKVRFINKETGEVKEQEVFMGDFPLMTEK------------------------GTFIINGAERVIVSQLVRS-- 140
Cdd:pfam04563 80 YSAPLYVDLELSVYNGEDIKPIEVFIGRLPIMLRSnacilsgateselvklgecpldpgGYFIINGSEKVIVAQEHRSrn 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 141 -PGPYYSVQIDKTG---KRLFST--TVIPNRGAWLE-YETDSNQIISVRIDRTRK-LPFTVFVRALGYGTDQEIINLFGE 212
Cdd:pfam04563 160 hPIVFKKADPKKRGsvaSVRSSAeiSVRPDSTSWVNvLEYLSNGTIYFKFPYIKKeIPIVIILRALGFTSDREIFELICY 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 213 D-------ERLLKTLEKDSVKSkeeglievykklrpgePPTVESASSLINSLFFDPKRYDLAKVGRYKfnkklslvdriv 285
Cdd:pfam04563 240 DvndqqlqEELLPSLEEGFKIR----------------IQTQEQALDYIGGRGRAIFRMGRPREPRIK------------ 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 286 gfvAAENVVDEntgEILVqegqkidketaqkiensgvksvniygedekvvkvignnfvdikaHIDfnIDDLNITEKVHYp 365
Cdd:pfam04563 292 ---YAEEILQK---EVLP--------------------------------------------HLG--TYELDETKKAYF- 318
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 366 tlkkiletytteedikealrekigelvpkhiiiddIIATMSYILNLPHGVGRVDDIDHLGNRRLRSVGELLQNQFRIGLS 445
Cdd:pfam04563 319 -----------------------------------IGYMIRRLLLLALGRREVDDRDHLGNKRLRLAGPLLASLFRVLFK 363
|
490 500 510
....*....|....*....|....*....|.
gi 1120097870 446 RMERVVRERM--TIQDMDTITPQALINIRPV 474
Cdd:pfam04563 364 KLVRDVRERLqkVLGSPDDLMLQLLVNAKPI 394
|
|
| RNA_pol_Rpb2_3 |
pfam04565 |
RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of ... |
489-556 |
1.35e-36 |
|
RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site.
Pssm-ID: 428011 [Multi-domain] Cd Length: 67 Bit Score: 132.26 E-value: 1.35e-36
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1120097870 489 QFMDQTNPLSELTHKRRLSAlGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTYAR 556
Cdd:pfam04565 1 QVLDRTNYLSTLSHLRRVNS-PRGGLFREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKHLALYAR 67
|
|
| RNA_pol_Rpb2_7 |
pfam04560 |
RNA polymerase Rpb2, domain 7; RNA polymerases catalyze the DNA dependent polymerization of ... |
1085-1161 |
2.17e-36 |
|
RNA polymerase Rpb2, domain 7; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain comprised of the structural domains anchor and clamp. The clamp region (C-terminal) contains a zinc-binding motif. The clamp region is named due to its interaction with the clamp domain found in Rpb1. The domain also contains a region termed "switch 4". The switches within the polymerase are thought to signal different stages of transcription.
Pssm-ID: 461355 [Multi-domain] Cd Length: 87 Bit Score: 132.33 E-value: 2.17e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 1085 GGQRFGEMEVWALEAYGAAHTLQEILTVKSD----DVVGRVKTYEA-----IVKGENIPEPG-IPESFKVLIKELQSLCL 1154
Cdd:pfam04560 1 GGLRFGEMERWALIAYGAAHTLQERLTIKSDayevDVCGRCGLYAAynkcpICKGETDISPGyIPESFKLLFQELQSLGI 80
|
....*..
gi 1120097870 1155 DVKVLSE 1161
Cdd:pfam04560 81 DPRLLLE 87
|
|
| PRK09606 |
PRK09606 |
DNA-directed RNA polymerase subunit B''; Validated |
18-559 |
2.25e-34 |
|
DNA-directed RNA polymerase subunit B''; Validated
Pssm-ID: 236587 [Multi-domain] Cd Length: 494 Bit Score: 138.93 E-value: 2.25e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 18 IDKVLEMPNLIEIQKRSYKWFLEEGLMEAFNDISPIQ-DYTGNLILEFVDYSLdGKPK-----------YDQEeCKERDV 85
Cdd:PRK09606 9 SDAYFKEHRLVRHHIDSYNDFVDNGLQKIIDEQGPIEtEIEDGVYVELGKIRV-GKPVvkeadgsereiYPME-ARLRNL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 86 TYAVPLKVKVRfINKETGEVKEQEVFMGDFPLM-----------TEK-------------GTFIINGAERVIVSQLVRSP 141
Cdd:PRK09606 87 TYSAPLYLEMS-PVEGGEEEEPEEVYIGELPVMvgskicnlyglSEEelievgedpldpgGYFIVNGSERVLMTLEDLAP 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 142 GPYYSVQIDKTGKRLFSTTVIPNRG---AWLEYETDSNQIISVRIDR-TRKLPFTVFVRALGYGTDQEIINLFGEDER-- 215
Cdd:PRK09606 166 NKILVEKDERYGDRIEVAKVFSQRRgyrALVTVERNRDGLLEVSFPSvPGSIPFVILMRALGLETDEEIVEAVSDDPEiv 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 216 --LLKTLEKDSVKSKEEGLIEVYKKLRPGEPptvesasslinslffdpKRYdlakvgRYKfnkklslvdrivgfvAAENV 293
Cdd:PRK09606 246 kfMLENLEEAEVDTQEEALEYIGKRVAPGQT-----------------KEY------RIK---------------RAEYV 287
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 294 VDentgeilvqegqkidketaqkiensgvksvniygedekvvkvigNNFVdikAHIdfNIDdlnitekvhyptlkkilet 373
Cdd:PRK09606 288 ID--------------------------------------------RYLL---PHL--GVE------------------- 299
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 374 ytteediKEALREKIGELvpkhiiiddiiATM-SYILNLPHGVGRVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVR 452
Cdd:PRK09606 300 -------PEVRRAKAHYL-----------GRMaEACFELALGRREEDDKDHYANKRLKLAGDLMEDLFRVAFNRLARDVK 361
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 453 ---ERMTIQDMDTitpqaliNIRPVVAA------IKEFF-------GSSQLSQFMDQTNPLSELTHKRRLSAlgpgGLSR 516
Cdd:PRK09606 362 yqlERANMRNREL-------SIKTAVRSdvlterLEHAMatgnwvgGRTGVSQLLDRTDYMATLSHLRRVVS----PLSR 430
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 1120097870 517 ERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTYARINE 559
Cdd:PRK09606 431 SQPHFEARDLHPTQWGRICPSETPEGPNCGLVKNFAQMVEIST 473
|
|
| RNA_pol_Rpb2_45 |
pfam10385 |
RNA polymerase beta subunit external 1 domain; RNA polymerases catalyze the DNA-dependent ... |
567-635 |
1.30e-31 |
|
RNA polymerase beta subunit external 1 domain; RNA polymerases catalyze the DNA-dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared with three in eukaryotes (not including mitochondrial or chloroplast polymerases). This domain in prokaryotes spans the gap between domains 4 and 5 of the yeast protein. It is also known as the external 1 region of the polymerase and is bound in association with the external 2 region.
Pssm-ID: 463067 [Multi-domain] Cd Length: 66 Bit Score: 117.85 E-value: 1.30e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1120097870 567 YRKVDKerGVVTDEIEYLTADEEEKYVFAQANEPLDEEGRFINKRVVARlRGGDIDVVPSSEVDYVDVS 635
Cdd:pfam10385 1 YRKVED--GKVTDEIVYLTADEEDGYVIAQANAPLDEDGRFVDERVSAR-YRGEFPLVPPEEVDYMDVS 66
|
|
| RNA_pol_Rpb2_2 |
pfam04561 |
RNA polymerase Rpb2, domain 2; RNA polymerases catalyze the DNA dependent polymerization of ... |
139-280 |
2.39e-17 |
|
RNA polymerase Rpb2, domain 2; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the lobe domain. DNA has been demonstrated to bind to the concave surface of the lobe domain, and plays a role in maintaining the transcription bubble. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 1 (DRI).
Pssm-ID: 398318 [Multi-domain] Cd Length: 185 Bit Score: 81.24 E-value: 2.39e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 139 RSPGPYYSVQIDKTGKRLFST-TVIPNRGAWLEYETDSNQIISVRIDRTRKLPFTVFVRALGYGTDQEIINLFGED---- 213
Cdd:pfam04561 1 RSNGIYVEKELDKNGIIATYTsSLISNRGSWLKLEIDGKTLIWSRPSKKRKIPIVIFLKALGLVSDREILDRLCYDfndp 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1120097870 214 ----ERLLKTLEKDSVKSKEEGLIEVYK--KLRPGEPPTVESASSLINSlffdpkrydlaKVGRYKFNKKLSL 280
Cdd:pfam04561 81 qmleLLKPELEEAENIYTQEEALDYIGKgfALRRGEEPRLQRAREILYS-----------RDPKYNLNKHLGL 142
|
|
| PRK00566 |
PRK00566 |
DNA-directed RNA polymerase subunit beta'; Provisional |
279-327 |
1.11e-10 |
|
DNA-directed RNA polymerase subunit beta'; Provisional
Pssm-ID: 234794 [Multi-domain] Cd Length: 1156 Bit Score: 66.24 E-value: 1.11e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1120097870 279 SLVDRIVGFVAAENVVDENTGEILVQEGQKIDKETAQKIENSGVKSVNI 327
Cdd:PRK00566 801 PLEERILGRVLAEDVVDPETGEVIVPAGTLIDEEIADKIEEAGIEEVKI 849
|
|
| PRK09603 |
PRK09603 |
DNA-directed RNA polymerase subunit beta/beta'; |
279-327 |
5.17e-06 |
|
DNA-directed RNA polymerase subunit beta/beta';
Pssm-ID: 181983 [Multi-domain] Cd Length: 2890 Bit Score: 51.08 E-value: 5.17e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1120097870 279 SLVDRIVGFVAAENVVDENTGEILVQEGQKIDKETAQKIENSGVKSVNI 327
Cdd:PRK09603 2199 PLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITI 2247
|
|
| rpoC2 |
PRK02597 |
DNA-directed RNA polymerase subunit beta'; Provisional |
277-327 |
1.11e-05 |
|
DNA-directed RNA polymerase subunit beta'; Provisional
Pssm-ID: 235052 [Multi-domain] Cd Length: 1331 Bit Score: 49.99 E-value: 1.11e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1120097870 277 KLSLVDRIVGFVAAENVVDeNTGEILVQEGQKIDKETAQKIENSGVKSVNI 327
Cdd:PRK02597 232 LIPLGDRLLGRVLAEDVVD-PEGEVIAERNTAIDPDLAKKIEKAGVEEVMV 281
|
|
| RpoC |
COG0086 |
DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]; DNA-directed RNA ... |
279-327 |
1.47e-05 |
|
DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]; DNA-directed RNA polymerase, beta' subunit/160 kD subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 439856 [Multi-domain] Cd Length: 1165 Bit Score: 49.39 E-value: 1.47e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1120097870 279 SLVDRIVGFVAAENVVDENTGEILVQEGQKIDKETAQKIENSGVKSVNI 327
Cdd:COG0086 800 PLKERILGRVAAEDVVDPGTGEVLVPAGTLIDEEVAEIIEEAGIDSVKV 848
|
|
| M23_peptidase |
cd12797 |
M23 family metallopeptidase, also known as beta-lytic metallopeptidase, and similar proteins; ... |
686-762 |
4.76e-03 |
|
M23 family metallopeptidase, also known as beta-lytic metallopeptidase, and similar proteins; This model describes the metallopeptidase M23 family, which includes beta-lytic metallopeptidase and lysostaphin. Members of this family are zinc endopeptidases that lyse bacterial cell wall peptidoglycans; they cleave either the N-acylmuramoyl-Ala bond between the cell wall peptidoglycan and the cross-linking peptide (e.g. beta-lytic endopeptidase) or a bond within the cross-linking peptide (e.g. stapholysin, and lysostaphin). Beta-lytic metallopeptidase, formerly known as beta-lytic protease, has a preference for cleavage of Gly-X bonds and favors hydrophobic or apolar residues on either side. It inhibits growth of sensitive organisms and may potentially serve as an antimicrobial agent. Lysostaphin, produced by Staphylococcus genus, cleaves pentaglycine cross-bridges of cell wall peptidoglycan, acting as autolysins to maintain cell wall metabolism or as toxins and weapons against competing strains. Staphylolysin (also known as LasA) is implicated in a range of processes related to Pseudomonas virulence, including stimulating shedding of the ectodomain of cell surface heparan sulphate proteoglycan syndecan-1, and elastin degradation in connective tissue. Its active site is less constricted and contains a five-coordinate zinc ion with trigonal bipyramidal geometry and two metal-bound water molecules, possibly contributing to its activity against a wider range of substrates than those used by related lytic enzymes, consistent with its multiple roles in Pseudomonas virulence. The family includes members that do not appear to have the conserved zinc-binding site and might be lipoproteins lacking proteolytic activity.
Pssm-ID: 410984 [Multi-domain] Cd Length: 85 Bit Score: 37.19 E-value: 4.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120097870 686 IAAKdSGTVVVAKNDGIVERVTADK-----IIVkRHSDGGKDEYKLLKfkrsnqgtcinqKPLVDNGDEVKAGEIIA--- 757
Cdd:cd12797 6 IAAP-EGTPVYAAADGTVVFAGWDGgygnyVII-DHGNGYYTLYAHLS------------SILVKVGQRVKKGQVIGtvg 71
|
....*.
gi 1120097870 758 -DGPST 762
Cdd:cd12797 72 nTGRST 77
|
|
| |
