NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1124693210|ref|WP_074971463|]
View 

MULTISPECIES: type VI secretion system baseplate subunit TssK [Pseudomonadaceae]

Protein Classification

type VI secretion system baseplate subunit TssK( domain architecture ID 10007516)

type VI secretion system baseplate subunit TssK is an essential baseplate (BP) subunit that connects the membrane complex, BP, and tail components

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
COG3522 COG3522
Predicted component of the type VI protein secretion system [Intracellular trafficking, ...
1-444 0e+00

Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 442744  Cd Length: 446  Bit Score: 637.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210   1 MSWNNRVVWSEGMFLRPQHFQQHDRYLEALVEGRCRSLRPGSWGFSELKIDESLLTQGKLAILSARGLLPDGTPFDIPGD 80
Cdd:COG3522     1 MSKINKVVWSEGMFLRPQHFQQQDRYLEHLLRARLRALSPYPWGFSELELDEDALALGKLALRRASGVFPDGTPFDAPDA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210  81 DVAPEPFDVEE-SLRDGIIYLALPLKRAGARDTVEEGEELGGARYRSQVREVRDDNAAFESRAPVSIGGRALRLVTERDG 159
Cdd:COG3522    81 DPLPPPLDLPElFVRNQTVYLALPLRRPGGANVAFEEAADSLARYRAEEEEVRDLNSGGGEPAEVQVARLNLRLLLESED 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 160 LGEYAAVGVVRVLEKRADRAVVLDESYIPPLLDVAVSKPLAAFRSELLGLLHQRGEALAGRVVASGAGGASEIADFLLLQ 239
Cdd:COG3522   161 RDGYVTLPVARILERRADGGVVLDESFIPPLLSISASPVLAGFLRELLGLLQARAEALAGRLREPGEFGVADVADFLLLQ 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 240 LVNRAEPLVAHLARIAPLHPEDFYREAVALAGEFSTFTASGRRPAEYPAYEHDDLANSFAPVMLALRQALSMVIDSRAVP 319
Cdd:COG3522   241 TLNRAEPLLRHLLRLPQLHPERLYRELLRLAGELATFSSESRRPPDLPAYDHDDLGASFAPLMDLLRQLLSTVLEQRAIA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 320 IPIVEKAYGVHVAMLADRTLLENSAFILVVRADVPGESIRGHFPQQAKVGSVEHIRDLVNLQLPGIGLLPLPVAPRQLPY 399
Cdd:COG3522   321 IPLEERRPGIWVARLDDRRLLENADFVLAVRADLPAEELRERFPAQVKVGSVEDIRDLVNSALPGIPLRPLPVAPRQIPY 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 1124693210 400 HAGSTYFELDRGSDHWKQLVHSGGFAFHIAGKFPGLNLAFWAIRS 444
Cdd:COG3522   401 HAGYVYFELDRSGPLWQQMLQSGGIALHVPGDFPGLELELWAVRR 445
 
Name Accession Description Interval E-value
COG3522 COG3522
Predicted component of the type VI protein secretion system [Intracellular trafficking, ...
1-444 0e+00

Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442744  Cd Length: 446  Bit Score: 637.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210   1 MSWNNRVVWSEGMFLRPQHFQQHDRYLEALVEGRCRSLRPGSWGFSELKIDESLLTQGKLAILSARGLLPDGTPFDIPGD 80
Cdd:COG3522     1 MSKINKVVWSEGMFLRPQHFQQQDRYLEHLLRARLRALSPYPWGFSELELDEDALALGKLALRRASGVFPDGTPFDAPDA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210  81 DVAPEPFDVEE-SLRDGIIYLALPLKRAGARDTVEEGEELGGARYRSQVREVRDDNAAFESRAPVSIGGRALRLVTERDG 159
Cdd:COG3522    81 DPLPPPLDLPElFVRNQTVYLALPLRRPGGANVAFEEAADSLARYRAEEEEVRDLNSGGGEPAEVQVARLNLRLLLESED 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 160 LGEYAAVGVVRVLEKRADRAVVLDESYIPPLLDVAVSKPLAAFRSELLGLLHQRGEALAGRVVASGAGGASEIADFLLLQ 239
Cdd:COG3522   161 RDGYVTLPVARILERRADGGVVLDESFIPPLLSISASPVLAGFLRELLGLLQARAEALAGRLREPGEFGVADVADFLLLQ 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 240 LVNRAEPLVAHLARIAPLHPEDFYREAVALAGEFSTFTASGRRPAEYPAYEHDDLANSFAPVMLALRQALSMVIDSRAVP 319
Cdd:COG3522   241 TLNRAEPLLRHLLRLPQLHPERLYRELLRLAGELATFSSESRRPPDLPAYDHDDLGASFAPLMDLLRQLLSTVLEQRAIA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 320 IPIVEKAYGVHVAMLADRTLLENSAFILVVRADVPGESIRGHFPQQAKVGSVEHIRDLVNLQLPGIGLLPLPVAPRQLPY 399
Cdd:COG3522   321 IPLEERRPGIWVARLDDRRLLENADFVLAVRADLPAEELRERFPAQVKVGSVEDIRDLVNSALPGIPLRPLPVAPRQIPY 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 1124693210 400 HAGSTYFELDRGSDHWKQLVHSGGFAFHIAGKFPGLNLAFWAIRS 444
Cdd:COG3522   401 HAGYVYFELDRSGPLWQQMLQSGGIALHVPGDFPGLELELWAVRR 445
T6SS_VasE pfam05936
Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE; T6SS_VasE is a family of of bacterial ...
19-440 0e+00

Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE; T6SS_VasE is a family of of bacterial proteins that are essential for the type VI pathogenic secretion system, although the exact function of this particular component of the system is still not known.


Pssm-ID: 428679  Cd Length: 427  Bit Score: 558.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210  19 HFQQHDRYLEALVEGRCRSLRPGSWGFSELKIDESLLTQGKLAILSARGLLPDGTPFDIPGDDVAPEPFDVEE--SLRDG 96
Cdd:pfam05936   1 HFQQQDRYLEHLLAARLRALSPYPWGFSELEIDEDALALGKLALTEASGVFPDGTLFDAPGNDPLPPPLELPEpaGTANL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210  97 IIYLALPLKRAGARDTVEEGEE--LGGARYRSQVREVRDDNAAFESRAPVSIGGRALRLVTERDGLGEYAAVGVVRVLEK 174
Cdd:pfam05936  81 TVYLALPLRRPGGGNVATEDADsaAAAARYRAEEEEVRDLNSGGADEAEVQLARLNLRLLLEGEDRGGYVTLPLARILED 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 175 RaDRAVVLDESYIPPLLDVAVSKPLAAFRSELLGLLHQRGEALAGRVVAS--GAGGASEIADFLLLQLVNRAEPLVAHLA 252
Cdd:pfam05936 161 R-DGGVVLDPDFIPPCLSLGASPALLGLLRELLGLLRARARALARRLRASqgAGFGVADVADFLLLQTLNRYEPLLRHLL 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 253 RIAPLHPEDFYREAVALAGEFSTFTASGRRPAEYPAYEHDDLANSFAPVMLALRQALSMVIDSRAVPIPIVEKAYGVHVA 332
Cdd:pfam05936 240 EAPQLHPERLYGELLQLAGELSTFSTESRRPRDLPPYDHDDLGASFAPLMDLLRQLLSTVLEQRAVSIPLEERRPGIYVA 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 333 MLADRTLLENSAFILVVRADVPGESIRGHFPQQAKVGSVEHIRDLVNLQLPGIGLLPLPVAPRQLPYHAGSTYFELDRGS 412
Cdd:pfam05936 320 RLDDRRLLENARFYLAVRADMPAEELRQRFPAQAKIGSPERIRELVNSALPGIPLRPLPVPPRQIPYRAGYQYFELDKQG 399
                         410       420
                  ....*....|....*....|....*...
gi 1124693210 413 DHWKQLVHSGGFAFHIAGKFPGLNLAFW 440
Cdd:pfam05936 400 PLWKQLLQSGGIALHVPGEFPDLQLELW 427
VI_chp_4 TIGR03353
type VI secretion protein, VC_A0114 family; Work by Mougous, et al. (2006), describes ...
6-443 0e+00

type VI secretion protein, VC_A0114 family; Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274536  Cd Length: 439  Bit Score: 548.77  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210   6 RVVWSEGMFLRPQHFQQHDRYLEALVEGRCRSLRPGSWGFSELKIDESLLTQGKLAILSARGLLPDGTPFDIPGDDVAPE 85
Cdd:TIGR03353   1 RVVWSEGMFLRPQHFQQQDRYLEHLLELRARALSPYFWGVSELEFDQDALSLGKIALTSASGIFPDGTPFDIPGDDPLPP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210  86 PFDVEESLRDGIIYLALPLKRAGARDtVEEGEEL--GGARYRSQVREVRDDNAAfESRAPVSIGGRALRLVTERDGLGEY 163
Cdd:TIGR03353  81 PLDLDPGVRTLVVYLALPLLRPGGNN-VSTPERRaaQVSRYVAVEEEVRDLNSG-GDEETIQLARLNLRLLLEGEDLSGY 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 164 AAVGVVRVLEKRADRAVVLDESYIPPLLDVAVSKPLAAFRSELLGLLHQRGEALAGRVVASGA-GGASEIADFLLLQLVN 242
Cdd:TIGR03353 159 VSLPIARIKEVRADGGIILDPSFIPPCLSIGASPPLGQRLRELLGLLRARAEALAGRRRESDQqAGSADIADFLLLQLLN 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 243 RAEPLVAHLARIAPLHPEDFYREAVALAGEFSTFTASGRRPAEYPAYEHDDLANSFAPVMLALRQALSMVIDSRAVPIPI 322
Cdd:TIGR03353 239 RYEPLLAHLLRAPQLHPEELYRELLQLAGELSTFSTESRRPRDLPAYDHDDLGEVFAPLEDLLRELLSTVLEQRAVSLPL 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 323 VEKAYGVHVAMLADRTLLENSAFILVVRADVPGESIRGHFPQQAKVGSVEHIRDLVNLQLPGIGLLPLPVAPRQLPYHAG 402
Cdd:TIGR03353 319 EERRDGIYVARLDDDRLLESARFVLAVRADMPAEELRRQFPAQAKVGAVEQIRDLVNLALPGIPLTALPVAPRAIPYRAG 398
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 1124693210 403 STYFELDRGSDHWKQLVHSGGFAFHIAGKFPGLNLAFWAIR 443
Cdd:TIGR03353 399 YVYFELDKTGPLWQRMLRSGAIAIHIPGDFPDLQLELWAVR 439
 
Name Accession Description Interval E-value
COG3522 COG3522
Predicted component of the type VI protein secretion system [Intracellular trafficking, ...
1-444 0e+00

Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442744  Cd Length: 446  Bit Score: 637.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210   1 MSWNNRVVWSEGMFLRPQHFQQHDRYLEALVEGRCRSLRPGSWGFSELKIDESLLTQGKLAILSARGLLPDGTPFDIPGD 80
Cdd:COG3522     1 MSKINKVVWSEGMFLRPQHFQQQDRYLEHLLRARLRALSPYPWGFSELELDEDALALGKLALRRASGVFPDGTPFDAPDA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210  81 DVAPEPFDVEE-SLRDGIIYLALPLKRAGARDTVEEGEELGGARYRSQVREVRDDNAAFESRAPVSIGGRALRLVTERDG 159
Cdd:COG3522    81 DPLPPPLDLPElFVRNQTVYLALPLRRPGGANVAFEEAADSLARYRAEEEEVRDLNSGGGEPAEVQVARLNLRLLLESED 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 160 LGEYAAVGVVRVLEKRADRAVVLDESYIPPLLDVAVSKPLAAFRSELLGLLHQRGEALAGRVVASGAGGASEIADFLLLQ 239
Cdd:COG3522   161 RDGYVTLPVARILERRADGGVVLDESFIPPLLSISASPVLAGFLRELLGLLQARAEALAGRLREPGEFGVADVADFLLLQ 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 240 LVNRAEPLVAHLARIAPLHPEDFYREAVALAGEFSTFTASGRRPAEYPAYEHDDLANSFAPVMLALRQALSMVIDSRAVP 319
Cdd:COG3522   241 TLNRAEPLLRHLLRLPQLHPERLYRELLRLAGELATFSSESRRPPDLPAYDHDDLGASFAPLMDLLRQLLSTVLEQRAIA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 320 IPIVEKAYGVHVAMLADRTLLENSAFILVVRADVPGESIRGHFPQQAKVGSVEHIRDLVNLQLPGIGLLPLPVAPRQLPY 399
Cdd:COG3522   321 IPLEERRPGIWVARLDDRRLLENADFVLAVRADLPAEELRERFPAQVKVGSVEDIRDLVNSALPGIPLRPLPVAPRQIPY 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 1124693210 400 HAGSTYFELDRGSDHWKQLVHSGGFAFHIAGKFPGLNLAFWAIRS 444
Cdd:COG3522   401 HAGYVYFELDRSGPLWQQMLQSGGIALHVPGDFPGLELELWAVRR 445
T6SS_VasE pfam05936
Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE; T6SS_VasE is a family of of bacterial ...
19-440 0e+00

Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE; T6SS_VasE is a family of of bacterial proteins that are essential for the type VI pathogenic secretion system, although the exact function of this particular component of the system is still not known.


Pssm-ID: 428679  Cd Length: 427  Bit Score: 558.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210  19 HFQQHDRYLEALVEGRCRSLRPGSWGFSELKIDESLLTQGKLAILSARGLLPDGTPFDIPGDDVAPEPFDVEE--SLRDG 96
Cdd:pfam05936   1 HFQQQDRYLEHLLAARLRALSPYPWGFSELEIDEDALALGKLALTEASGVFPDGTLFDAPGNDPLPPPLELPEpaGTANL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210  97 IIYLALPLKRAGARDTVEEGEE--LGGARYRSQVREVRDDNAAFESRAPVSIGGRALRLVTERDGLGEYAAVGVVRVLEK 174
Cdd:pfam05936  81 TVYLALPLRRPGGGNVATEDADsaAAAARYRAEEEEVRDLNSGGADEAEVQLARLNLRLLLEGEDRGGYVTLPLARILED 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 175 RaDRAVVLDESYIPPLLDVAVSKPLAAFRSELLGLLHQRGEALAGRVVAS--GAGGASEIADFLLLQLVNRAEPLVAHLA 252
Cdd:pfam05936 161 R-DGGVVLDPDFIPPCLSLGASPALLGLLRELLGLLRARARALARRLRASqgAGFGVADVADFLLLQTLNRYEPLLRHLL 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 253 RIAPLHPEDFYREAVALAGEFSTFTASGRRPAEYPAYEHDDLANSFAPVMLALRQALSMVIDSRAVPIPIVEKAYGVHVA 332
Cdd:pfam05936 240 EAPQLHPERLYGELLQLAGELSTFSTESRRPRDLPPYDHDDLGASFAPLMDLLRQLLSTVLEQRAVSIPLEERRPGIYVA 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 333 MLADRTLLENSAFILVVRADVPGESIRGHFPQQAKVGSVEHIRDLVNLQLPGIGLLPLPVAPRQLPYHAGSTYFELDRGS 412
Cdd:pfam05936 320 RLDDRRLLENARFYLAVRADMPAEELRQRFPAQAKIGSPERIRELVNSALPGIPLRPLPVPPRQIPYRAGYQYFELDKQG 399
                         410       420
                  ....*....|....*....|....*...
gi 1124693210 413 DHWKQLVHSGGFAFHIAGKFPGLNLAFW 440
Cdd:pfam05936 400 PLWKQLLQSGGIALHVPGEFPDLQLELW 427
VI_chp_4 TIGR03353
type VI secretion protein, VC_A0114 family; Work by Mougous, et al. (2006), describes ...
6-443 0e+00

type VI secretion protein, VC_A0114 family; Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274536  Cd Length: 439  Bit Score: 548.77  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210   6 RVVWSEGMFLRPQHFQQHDRYLEALVEGRCRSLRPGSWGFSELKIDESLLTQGKLAILSARGLLPDGTPFDIPGDDVAPE 85
Cdd:TIGR03353   1 RVVWSEGMFLRPQHFQQQDRYLEHLLELRARALSPYFWGVSELEFDQDALSLGKIALTSASGIFPDGTPFDIPGDDPLPP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210  86 PFDVEESLRDGIIYLALPLKRAGARDtVEEGEEL--GGARYRSQVREVRDDNAAfESRAPVSIGGRALRLVTERDGLGEY 163
Cdd:TIGR03353  81 PLDLDPGVRTLVVYLALPLLRPGGNN-VSTPERRaaQVSRYVAVEEEVRDLNSG-GDEETIQLARLNLRLLLEGEDLSGY 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 164 AAVGVVRVLEKRADRAVVLDESYIPPLLDVAVSKPLAAFRSELLGLLHQRGEALAGRVVASGA-GGASEIADFLLLQLVN 242
Cdd:TIGR03353 159 VSLPIARIKEVRADGGIILDPSFIPPCLSIGASPPLGQRLRELLGLLRARAEALAGRRRESDQqAGSADIADFLLLQLLN 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 243 RAEPLVAHLARIAPLHPEDFYREAVALAGEFSTFTASGRRPAEYPAYEHDDLANSFAPVMLALRQALSMVIDSRAVPIPI 322
Cdd:TIGR03353 239 RYEPLLAHLLRAPQLHPEELYRELLQLAGELSTFSTESRRPRDLPAYDHDDLGEVFAPLEDLLRELLSTVLEQRAVSLPL 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124693210 323 VEKAYGVHVAMLADRTLLENSAFILVVRADVPGESIRGHFPQQAKVGSVEHIRDLVNLQLPGIGLLPLPVAPRQLPYHAG 402
Cdd:TIGR03353 319 EERRDGIYVARLDDDRLLESARFVLAVRADMPAEELRRQFPAQAKVGAVEQIRDLVNLALPGIPLTALPVAPRAIPYRAG 398
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 1124693210 403 STYFELDRGSDHWKQLVHSGGFAFHIAGKFPGLNLAFWAIR 443
Cdd:TIGR03353 399 YVYFELDKTGPLWQRMLRSGAIAIHIPGDFPDLQLELWAVR 439
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH