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Conserved domains on  [gi|1134295681|ref|WP_076535916|]
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transglycosylase domain-containing protein [Bacillus wiedmannii]

Protein Classification

transglycosylase domain-containing protein( domain architecture ID 11432910)

transglycosylase domain-containing protein catalyzes the polymerization of murein glycan chains; such as biosynthetic peptidoglycan transglycosylase and bifunctional penicillin-binding proteins

CAZY:  GT51
EC:  2.4.-.-
PubMed:  8830253
SCOP:  4002510

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
MrcB COG0744
Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall ...
2-612 0e+00

Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 440507 [Multi-domain]  Cd Length: 630  Bit Score: 665.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681   2 KKVKWTLLGGLATLVLAIVLYKLIVLAGGYMM------DEKQLVFHSSSRIVDQKGKEITKLYVENRDLVPVEQIPKYVQ 75
Cdd:COG0744     8 KRLLRRLLGLLLLLLAVLVLAALAGLVALYVAdlpdpeELEDLALPQTSTIYDRDGTLIATLGDENREWVPLDQIPPHLK 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681  76 QSFIAVEDSRFYEHQGIDYPSIFRALYKDTLAGEKVEGGSTITQQLAKNVFLTREKTFTRKMKEVAISLQLEQKYTKQQI 155
Cdd:COG0744    88 DAVVAIEDRRFYEHGGVDPKGIARALVANLTAGGVVQGGSTITQQLVKNLFLSNERTLSRKLKEALLALKLERKYSKDEI 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 156 LEMYMNHIYFGHGAYGIQAAAKLYFNKNVEDLTVEEGAMLAGLPKSPNGYSPYFSPEKSKERRDLVLSLMHKQGYLTAEE 235
Cdd:COG0744   168 LELYLNTVYFGRGAYGIEAAAQYYFGKSASDLTLAEAALLAGLVKAPSYYDPYRNPEAAKERRNLVLDRMVEQGYITQAE 247
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 236 SVRYQGKTIALYKNLDENELAYMPY-IDMVIDEAARLYGLshQEVLRGGYTFVVPMDEKIQKVAYNQFQDARNfPGKEEG 314
Cdd:COG0744   248 ADAAKAEPLTLVPPPNGAAAGKYPYfVDYVRRELEELLGE--DDLYRGGLKIYTTLDPKLQKAAEKAVKNVLP-EGKPGG 324
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 315 AQGAFLLMDNRTGGIKAAIGGRKYVPRGFNRVF-AKRQPGSVLKPlIVYAPALEtKKYNPYSLLTNERNSFEG--YEPRN 391
Cdd:COG0744   325 LQAALVVVDPKTGEVLAMVGGRDYGKSQFNRATqAKRQPGSTFKP-FVYAAALE-QGYTPATTVDDEPVTFPGggWSPKN 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 392 YNHAYSKEMTMYDAILESANVPAVSLLNELGVEEGKQYLEKGNVHI-ADAGLSTALGGlkNGVSTFDLVKMYRAFLANGA 470
Cdd:COG0744   403 YDGRYRGPVTLREALANSLNTPAVRLAQEVGLDKVVDTARRLGITSpLDPNPSLALGT--SEVSPLEMASAYATFANGGV 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 471 IIEPHVIDKVLNRHGAVIGESPKVETKIFSKQTAWYMTKMLEGVVKEGTAKAGIYSGA-LAGKTGTTslpnddNGARDMW 549
Cdd:COG0744   481 YVEPHAITKVTDADGKVLYEAKPKCEQVISPEVAYLMTDMLQDVVTSGTGRAARLPGRpVAGKTGTT------NDNRDAW 554
                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1134295681 550 FVGYTPNLVGAVWIGYDRTDKEHQLQGESASAtKLFKKILTKA-KVEQKEQFMKPEGVETIGAP 612
Cdd:COG0744   555 FVGYTPQLVTAVWVGNDDNSPMGYVTGGSLPA-PIWRDFMEAAlEGLPVEDFPKPSGVVRIDEP 617
 
Name Accession Description Interval E-value
MrcB COG0744
Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall ...
2-612 0e+00

Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440507 [Multi-domain]  Cd Length: 630  Bit Score: 665.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681   2 KKVKWTLLGGLATLVLAIVLYKLIVLAGGYMM------DEKQLVFHSSSRIVDQKGKEITKLYVENRDLVPVEQIPKYVQ 75
Cdd:COG0744     8 KRLLRRLLGLLLLLLAVLVLAALAGLVALYVAdlpdpeELEDLALPQTSTIYDRDGTLIATLGDENREWVPLDQIPPHLK 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681  76 QSFIAVEDSRFYEHQGIDYPSIFRALYKDTLAGEKVEGGSTITQQLAKNVFLTREKTFTRKMKEVAISLQLEQKYTKQQI 155
Cdd:COG0744    88 DAVVAIEDRRFYEHGGVDPKGIARALVANLTAGGVVQGGSTITQQLVKNLFLSNERTLSRKLKEALLALKLERKYSKDEI 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 156 LEMYMNHIYFGHGAYGIQAAAKLYFNKNVEDLTVEEGAMLAGLPKSPNGYSPYFSPEKSKERRDLVLSLMHKQGYLTAEE 235
Cdd:COG0744   168 LELYLNTVYFGRGAYGIEAAAQYYFGKSASDLTLAEAALLAGLVKAPSYYDPYRNPEAAKERRNLVLDRMVEQGYITQAE 247
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 236 SVRYQGKTIALYKNLDENELAYMPY-IDMVIDEAARLYGLshQEVLRGGYTFVVPMDEKIQKVAYNQFQDARNfPGKEEG 314
Cdd:COG0744   248 ADAAKAEPLTLVPPPNGAAAGKYPYfVDYVRRELEELLGE--DDLYRGGLKIYTTLDPKLQKAAEKAVKNVLP-EGKPGG 324
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 315 AQGAFLLMDNRTGGIKAAIGGRKYVPRGFNRVF-AKRQPGSVLKPlIVYAPALEtKKYNPYSLLTNERNSFEG--YEPRN 391
Cdd:COG0744   325 LQAALVVVDPKTGEVLAMVGGRDYGKSQFNRATqAKRQPGSTFKP-FVYAAALE-QGYTPATTVDDEPVTFPGggWSPKN 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 392 YNHAYSKEMTMYDAILESANVPAVSLLNELGVEEGKQYLEKGNVHI-ADAGLSTALGGlkNGVSTFDLVKMYRAFLANGA 470
Cdd:COG0744   403 YDGRYRGPVTLREALANSLNTPAVRLAQEVGLDKVVDTARRLGITSpLDPNPSLALGT--SEVSPLEMASAYATFANGGV 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 471 IIEPHVIDKVLNRHGAVIGESPKVETKIFSKQTAWYMTKMLEGVVKEGTAKAGIYSGA-LAGKTGTTslpnddNGARDMW 549
Cdd:COG0744   481 YVEPHAITKVTDADGKVLYEAKPKCEQVISPEVAYLMTDMLQDVVTSGTGRAARLPGRpVAGKTGTT------NDNRDAW 554
                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1134295681 550 FVGYTPNLVGAVWIGYDRTDKEHQLQGESASAtKLFKKILTKA-KVEQKEQFMKPEGVETIGAP 612
Cdd:COG0744   555 FVGYTPQLVTAVWVGNDDNSPMGYVTGGSLPA-PIWRDFMEAAlEGLPVEDFPKPSGVVRIDEP 617
PBP_1a_fam TIGR02074
penicillin-binding protein, 1A family; Bacterial that synthesize a cell wall of peptidoglycan ...
61-592 0e+00

penicillin-binding protein, 1A family; Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273955 [Multi-domain]  Cd Length: 531  Bit Score: 573.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681  61 NRDLVPVEQIPKYVQQSFIAVEDSRFYEHQGIDYPSIFRALYKDTLAGEKVEGGSTITQQLAKNVFLTREKTFTRKMKEV 140
Cdd:TIGR02074   1 RREYVPIDDIPENLINAFLAIEDRRFYDHFGIDLKGIGRAAVANITSGRVLEGGSTITQQLAKNLYLTNERTITRKIQEA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 141 AISLQLEQKYTKQQILEMYMNHIYFGHGAYGIQAAAKLYFNKNVEDLTVEEGAMLAGLPKSPNGYSPYFSPEKSKERRDL 220
Cdd:TIGR02074  81 LLALKLEQKLSKDEILELYLNRIYFGNGAYGIEAAAQFYFGKSVNDLTLAEAAMLAGLPKAPSAYNPFKNPERAKDRRNL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 221 VLSLMHKQGYLTAEESVRYQGKTIALYKNLDENELAYMPY-IDMVIDEAARLYGlshQEVLRGGYTFVVPMDEKIQKVAY 299
Cdd:TIGR02074 161 VLSNMVENGYITAEEAEEAINEPIQLYLQTKKSEQYKAPYfVDYVIQELEEEYG---EELYTGGLKIYTTLDLDAQKAAE 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 300 NQFQDARNFPGKEEG--AQGAFLLMDNRTGGIKAAIGGRKYVPRGFNR-VFAKRQPGSVLKPLiVYAPALEtKKYNPYSL 376
Cdd:TIGR02074 238 KVLNTGLRVAGRRDGddLQAALVAIDPDTGAVRALVGGRDYGKSQFNRaTQAKRQPGSTFKPF-VYAAALE-KGLTPATI 315
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 377 LTNERNSFEG---YEPRNYNHAYSKEMTMYDAILESANVPAVSLLNELGVEEGKQYLEKgnVHIADA---GLSTALGGlk 450
Cdd:TIGR02074 316 VNDEPITYNGngpWSPKNYGGGYRGNVTLRQALAQSRNIPAVRLLQEVGLDKVVALAKR--FGITSPldpVLSLALGT-- 391
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 451 NGVSTFDLVKMYRAFLANGAIIEPHVIDKVLNRHGAVIGESPKVETKIFSKQTAWYMTKMLEGVVKEGTAK-AGIYSGAL 529
Cdd:TIGR02074 392 VEVSPLEMASAYAVFANGGKYVEPHGIRKIVDRDGKVIYENKPKTTQVISPATAYIMTDMLKGVVESGTGRsARLPGRPV 471
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1134295681 530 AGKTGTTslpnddNGARDMWFVGYTPNLVGAVWIGYDRTDKEHQLQGESASATKLFKKILTKA 592
Cdd:TIGR02074 472 AGKTGTT------QNWRDAWFVGYTPYYVTAVWVGYDDKKTLGKSGTGGGLAAPIWRDFMAEA 528
Transgly pfam00912
Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of ...
51-226 8.81e-93

Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively. The transglycosylase domain catalyzes the polymerization of murein glycan chains.


Pssm-ID: 459993 [Multi-domain]  Cd Length: 177  Bit Score: 285.57  E-value: 8.81e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681  51 GKEITKLYVENRDLVPVEQIPKYVQQSFIAVEDSRFYEHQGIDYPSIFRALYKDTLAGEKVEGGSTITQQLAKNVFLTRE 130
Cdd:pfam00912   2 GTLLAELGEENREYVPLDDIPPALKNAVLAIEDRRFYEHGGVDPKGIARALLSNLRSGRIVQGGSTITQQLAKNLFLTPE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 131 KTFTRKMKEVAISLQLEQKYTKQQILEMYMNHIYFGHGAYGIQAAAKLYFNKNVEDLTVEEGAMLAGLPKSPNGYSPYFS 210
Cdd:pfam00912  82 RTLTRKLKEAVLALKLERRYSKDEILEAYLNTVYFGRGAYGIEAAARAYFGKDASDLTLAEAALLAGLPQAPSRYNPLRN 161
                         170
                  ....*....|....*.
gi 1134295681 211 PEKSKERRDLVLSLMH 226
Cdd:pfam00912 162 PERAKRRRNLVLDRMV 177
PRK14850 PRK14850
penicillin-binding protein 1b; Provisional
60-589 2.18e-68

penicillin-binding protein 1b; Provisional


Pssm-ID: 237835 [Multi-domain]  Cd Length: 764  Bit Score: 238.98  E-value: 2.18e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681  60 ENRDLVPVEQIPKYVQQSFIAVEDSRFYEHQGIDYPSIFRALYKDTLAGEKVEGGSTITQQLAKNVFLTREKTFTRKMKE 139
Cdd:PRK14850  155 KKRLFIPRNQYPEMLIKTLLAIEDKYFYEHDGIHLSSIGRAFLVNLMSGHTIQGGSTLTQQLVKNLFLTNTRSLWRKINE 234
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 140 VAISLQLEQKYTKQQILEMYMNHIYFGHGA----YGIQAAAKLYFNKNVEDLTVEEGAMLAGLPKSPNGYSPYFSPEKSK 215
Cdd:PRK14850  235 IYMALILDRFYSKDRILELYLNEVYLGQDGneqiRGFPLASIYYFGRPINELNLDQYALLVGMVKGASLYNPWTNPNLTL 314
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 216 ERRDLVLSLMHKQGYLTAEesvryqgktiaLYKNLDENELAYMP----------YIDMVIDEAARLYGLSHQEVlrGGYT 285
Cdd:PRK14850  315 KRRNLVLFLLYKQKVITRK-----------LYKDLCSRPLNVQSkgniisshpaFIQLVCEEFHKKIHYPFKNF--SGTK 381
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 286 FVVPMDEKIQKVAYNQFQDARNFPGKEEGAQ---GAFLLMDNRTGGIKAAIGGRKYVPRGFNR-VFAKRQPGSVLKPLIV 361
Cdd:PRK14850  382 IFTTLDYISQNAAEQAVKIGIPILKRKKRLKdleVAMVIIDRFSGEVRALIGSSKPEFNGYNRaLKARRSIGSLSKPITY 461
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 362 YAPALETKKYNPYSLLTN-----ERNSFEGYEPRNYNHAYSKEMTMYDAILESANVPAVSLLNELGVEEGKQYLEKGNV- 435
Cdd:PRK14850  462 LTALSQPEKYHLNTWISDtpisiKLDNGQYWTPKNNNFSFSGKVMLIDALIHSINIPTVHLSINLGLKKLVDSWILLGIs 541
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 436 --HIADAGlSTALGGLKngVSTFDLVKMYRAFLANGAIIEPHVIDKVLNRHGAVIGESPKVETKIFSKQTAWYMTKMLEG 513
Cdd:PRK14850  542 snYITPLP-SISLGAIN--LTPMEVAQVFQIIGSGGYKSSLSSIRSIISDDNKVLYQNFPQSKHVESSQASYLTLYAMQQ 618
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1134295681 514 VVKEGTAK--AGIYSG-ALAGKTGTTslpnddNGARDMWFVGYTPNLVGAVWIGYDrTDKEHQLQGeSASATKLFKKIL 589
Cdd:PRK14850  619 VVKSGTAKslGTIFKEfSLAGKTGTT------NNLVDSWFVGIDGKQVVITWIGRD-NNHTTKLYG-SSGAMKIYKRYL 689
 
Name Accession Description Interval E-value
MrcB COG0744
Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall ...
2-612 0e+00

Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440507 [Multi-domain]  Cd Length: 630  Bit Score: 665.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681   2 KKVKWTLLGGLATLVLAIVLYKLIVLAGGYMM------DEKQLVFHSSSRIVDQKGKEITKLYVENRDLVPVEQIPKYVQ 75
Cdd:COG0744     8 KRLLRRLLGLLLLLLAVLVLAALAGLVALYVAdlpdpeELEDLALPQTSTIYDRDGTLIATLGDENREWVPLDQIPPHLK 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681  76 QSFIAVEDSRFYEHQGIDYPSIFRALYKDTLAGEKVEGGSTITQQLAKNVFLTREKTFTRKMKEVAISLQLEQKYTKQQI 155
Cdd:COG0744    88 DAVVAIEDRRFYEHGGVDPKGIARALVANLTAGGVVQGGSTITQQLVKNLFLSNERTLSRKLKEALLALKLERKYSKDEI 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 156 LEMYMNHIYFGHGAYGIQAAAKLYFNKNVEDLTVEEGAMLAGLPKSPNGYSPYFSPEKSKERRDLVLSLMHKQGYLTAEE 235
Cdd:COG0744   168 LELYLNTVYFGRGAYGIEAAAQYYFGKSASDLTLAEAALLAGLVKAPSYYDPYRNPEAAKERRNLVLDRMVEQGYITQAE 247
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 236 SVRYQGKTIALYKNLDENELAYMPY-IDMVIDEAARLYGLshQEVLRGGYTFVVPMDEKIQKVAYNQFQDARNfPGKEEG 314
Cdd:COG0744   248 ADAAKAEPLTLVPPPNGAAAGKYPYfVDYVRRELEELLGE--DDLYRGGLKIYTTLDPKLQKAAEKAVKNVLP-EGKPGG 324
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 315 AQGAFLLMDNRTGGIKAAIGGRKYVPRGFNRVF-AKRQPGSVLKPlIVYAPALEtKKYNPYSLLTNERNSFEG--YEPRN 391
Cdd:COG0744   325 LQAALVVVDPKTGEVLAMVGGRDYGKSQFNRATqAKRQPGSTFKP-FVYAAALE-QGYTPATTVDDEPVTFPGggWSPKN 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 392 YNHAYSKEMTMYDAILESANVPAVSLLNELGVEEGKQYLEKGNVHI-ADAGLSTALGGlkNGVSTFDLVKMYRAFLANGA 470
Cdd:COG0744   403 YDGRYRGPVTLREALANSLNTPAVRLAQEVGLDKVVDTARRLGITSpLDPNPSLALGT--SEVSPLEMASAYATFANGGV 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 471 IIEPHVIDKVLNRHGAVIGESPKVETKIFSKQTAWYMTKMLEGVVKEGTAKAGIYSGA-LAGKTGTTslpnddNGARDMW 549
Cdd:COG0744   481 YVEPHAITKVTDADGKVLYEAKPKCEQVISPEVAYLMTDMLQDVVTSGTGRAARLPGRpVAGKTGTT------NDNRDAW 554
                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1134295681 550 FVGYTPNLVGAVWIGYDRTDKEHQLQGESASAtKLFKKILTKA-KVEQKEQFMKPEGVETIGAP 612
Cdd:COG0744   555 FVGYTPQLVTAVWVGNDDNSPMGYVTGGSLPA-PIWRDFMEAAlEGLPVEDFPKPSGVVRIDEP 617
PBP_1a_fam TIGR02074
penicillin-binding protein, 1A family; Bacterial that synthesize a cell wall of peptidoglycan ...
61-592 0e+00

penicillin-binding protein, 1A family; Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273955 [Multi-domain]  Cd Length: 531  Bit Score: 573.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681  61 NRDLVPVEQIPKYVQQSFIAVEDSRFYEHQGIDYPSIFRALYKDTLAGEKVEGGSTITQQLAKNVFLTREKTFTRKMKEV 140
Cdd:TIGR02074   1 RREYVPIDDIPENLINAFLAIEDRRFYDHFGIDLKGIGRAAVANITSGRVLEGGSTITQQLAKNLYLTNERTITRKIQEA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 141 AISLQLEQKYTKQQILEMYMNHIYFGHGAYGIQAAAKLYFNKNVEDLTVEEGAMLAGLPKSPNGYSPYFSPEKSKERRDL 220
Cdd:TIGR02074  81 LLALKLEQKLSKDEILELYLNRIYFGNGAYGIEAAAQFYFGKSVNDLTLAEAAMLAGLPKAPSAYNPFKNPERAKDRRNL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 221 VLSLMHKQGYLTAEESVRYQGKTIALYKNLDENELAYMPY-IDMVIDEAARLYGlshQEVLRGGYTFVVPMDEKIQKVAY 299
Cdd:TIGR02074 161 VLSNMVENGYITAEEAEEAINEPIQLYLQTKKSEQYKAPYfVDYVIQELEEEYG---EELYTGGLKIYTTLDLDAQKAAE 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 300 NQFQDARNFPGKEEG--AQGAFLLMDNRTGGIKAAIGGRKYVPRGFNR-VFAKRQPGSVLKPLiVYAPALEtKKYNPYSL 376
Cdd:TIGR02074 238 KVLNTGLRVAGRRDGddLQAALVAIDPDTGAVRALVGGRDYGKSQFNRaTQAKRQPGSTFKPF-VYAAALE-KGLTPATI 315
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 377 LTNERNSFEG---YEPRNYNHAYSKEMTMYDAILESANVPAVSLLNELGVEEGKQYLEKgnVHIADA---GLSTALGGlk 450
Cdd:TIGR02074 316 VNDEPITYNGngpWSPKNYGGGYRGNVTLRQALAQSRNIPAVRLLQEVGLDKVVALAKR--FGITSPldpVLSLALGT-- 391
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 451 NGVSTFDLVKMYRAFLANGAIIEPHVIDKVLNRHGAVIGESPKVETKIFSKQTAWYMTKMLEGVVKEGTAK-AGIYSGAL 529
Cdd:TIGR02074 392 VEVSPLEMASAYAVFANGGKYVEPHGIRKIVDRDGKVIYENKPKTTQVISPATAYIMTDMLKGVVESGTGRsARLPGRPV 471
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1134295681 530 AGKTGTTslpnddNGARDMWFVGYTPNLVGAVWIGYDRTDKEHQLQGESASATKLFKKILTKA 592
Cdd:TIGR02074 472 AGKTGTT------QNWRDAWFVGYTPYYVTAVWVGYDDKKTLGKSGTGGGLAAPIWRDFMAEA 528
MrcA COG5009
Membrane carboxypeptidase/penicillin-binding protein [Cell wall/membrane/envelope biogenesis];
1-567 1.44e-173

Membrane carboxypeptidase/penicillin-binding protein [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 444033 [Multi-domain]  Cd Length: 785  Bit Score: 515.86  E-value: 1.44e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681   1 MKKVKWTLLGGLATLVLAIVlykliVLAGGYMMDEKQLVFHSS---------SRIVDQKGKEITKLYVENRDLVPVEQIP 71
Cdd:COG5009     1 MRLLKILLILLLLLLLLGAL-----AVAGLYLYLSPDLPDVETlkdyqpptpSRVYSADGKLIAEFGEERRIPVPIEEIP 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681  72 KYVQQSFIAVEDSRFYEHQGIDYPSIFRALYKDTLAGEKVEGGSTITQQLAKNVFLTREKTFTRKMKEVAISLQLEQKYT 151
Cdd:COG5009    76 PLLINAFLAAEDKRFYEHPGVDPIGIARAAVVNLRTGRRVQGGSTITQQVAKNFLLSPERTLTRKIKEAILALRIEQELS 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 152 KQQILEMYMNHIYFGHGAYGIQAAAKLYFNKNVEDLTVEEGAMLAGLPKSPNGYSPYFSPEKSKERRDLVLSLMHKQGYL 231
Cdd:COG5009   156 KDEILELYLNKIYLGHRAYGVAAAAQTYFGKSLDELTLAEAAMLAGLPKAPSRYNPIRNPERALERRNYVLGRMLELGYI 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 232 TAEESVRYQGKTIALYKNLDENELaYMPYI-DMVIDEAARLYGLshQEVLRGGYTFVVPMDEKIQKVAYNQFQDA----- 305
Cdd:COG5009   236 TQAEYEAAKAEPLTARYHGASAEV-DAPYFaEMVRRELVERYGE--DALYTGGLKVYTTLDPRLQEAAEKALRDGllayd 312
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 306 ---------RNFPGKEEG-------------------------------------------------------------- 314
Cdd:COG5009   313 rrhgyrgpeAHLDLAEEDwdealaevpdvgdlrpavvlevddksarvglrdgetgtlpleglkwarpyindnrrgpapks 392
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 315 ----------------------------AQGAFLLMDNRTGGIKAAIGGRKYVPRGFNRVF-AKRQPGSVLKPlIVYAPA 365
Cdd:COG5009   393 asdvlkpgdvirvrpvadggwrlrqipeVQGALVALDPHTGAVLALVGGFDFEQSKFNRATqAKRQPGSSFKP-FVYAAA 471
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 366 LEtKKYNPYSLLT------NERNSFEGYEPRNYNHAYSKEMTMYDAILESANVPAVSLLNELGVEEGKQYLEKgnVHIAD 439
Cdd:COG5009   472 LD-NGYTPATIINdapivfDDGGGGGVWRPKNYSGKFYGPTTLREALEKSRNLVTVRLLQDVGIDYVIDYAER--FGIYS 548
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 440 ---AGLSTALgglknGVSTFDLVKMYRAF--LANGAI-IEPHVIDKVLNRHGAVI---------------------GESP 492
Cdd:COG5009   549 klpPNLSLAL-----GSGEVTPLEMARAYavFANGGYrVEPYLIDRIEDRNGKVIyradparacedcdaaewdgaePRLP 623
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 493 KVETKIFSKQTAWYMTKMLEGVVKEGTAKAgiysgA------LAGKTGTTslpnddNGARDMWFVGYTPNLVGAVWIGYD 566
Cdd:COG5009   624 DPAEQVIDPRTAYQMTSMLRGVVQRGTGRR-----AralgrdIAGKTGTT------NDSKDAWFVGFTPDLVAGVWVGFD 692

                  .
gi 1134295681 567 R 567
Cdd:COG5009   693 D 693
PBP_1b TIGR02071
penicillin-binding protein 1B; Bacterial that synthesize a cell wall of peptidoglycan (murein) ...
52-610 2.68e-107

penicillin-binding protein 1B; Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273952 [Multi-domain]  Cd Length: 730  Bit Score: 342.47  E-value: 2.68e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681  52 KEITKLY---VENRDLVPVEQIPKYVQQSFIAVEDSRFYEHQGIDYPSIFRALYKDTLAGEKVEGGSTITQQLAKNVFLT 128
Cdd:TIGR02071 134 KLIAMLYspnGEQRLFVPRDQFPELLVDTLLATEDRDFYEHDGISLYSIGRAVWVNLTAGRTVQGGSTLTQQLVKNLFLS 213
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 129 REKTFTRKMKEVAISLQLEQKYTKQQILEMYMNHIYFGH-GA---YGIQAAAKLYFNKNVEDLTVEEGAMLAGLPKSPNG 204
Cdd:TIGR02071 214 NERSLWRKANEAYMALILDARYSKDRILELYLNEVYLGQsGDdaiHGFPLASQYYFGRPLGELSLDQVALLVGMVKGPSY 293
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 205 YSPYFSPEKSKERRDLVLSLMHKQGYLTAEESVRYQGKTIALYK--NLDENELAYMpyiDMVIDEAARLYGlshQEVLRG 282
Cdd:TIGR02071 294 YNPWRNPDRALERRNLVLRLLQEQKIIDDEEYDMLSARPLGVQKkgGIISRQPAFL---QLVRRELRQKLG---DKVKDL 367
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 283 -GYTFVVPMDEKIQKVAYN-------QFQDARNFPGKEegaqGAFLLMDNRTGGIKAAIGGRKYVPRGFNRVF-AKRQPG 353
Cdd:TIGR02071 368 sGLRIFTTLDPVSQSAAEQavqetipALKKKKKLPDLE----AAMVVTDRFTGEVRAMVGGSDPQFAGFNRALqARRQIG 443
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 354 SVLKPlIVYAPALET-KKYNPYSLLTNERNSFEG-----YEPRNYNHAYSKEMTMYDAILESANVPAVSLLNELGVEEGK 427
Cdd:TIGR02071 444 SLVKP-AVYLTALSQpDKYRLNTWIEDQPLSIKLsngqvWSPQNYDRRYSGTVMLYDALAHSLNIPTVNLGMKVGLPKVS 522
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 428 QYLEK--GNVHIADAGLSTALGGLKngVSTFDLVKMYRaFLANGAIIEP-HVIDKVLNRHGAVIGESPKVETKIFSKQTA 504
Cdd:TIGR02071 523 QTWNKlgINKDEIPPVPSMLLGAIN--LTPYEVAQLYQ-TIASGGNRAPlSAVRSVLDEDGKVLYQSDPQAEQAVPSQAA 599
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 505 WYMTKMLEGVVKEGTAK---AGIYSGALAGKTGTTslpnddNGARDMWFVGYTPNLVGAVWIGYDRtDKEHQLQGESAsA 581
Cdd:TIGR02071 600 YLTLYAMQQVVQRGTARslgADFPSLSLAGKTGTT------NDNRDSWFAGIDGKEVTIIWLGRDD-NGPTKLTGASG-A 671
                         570       580
                  ....*....|....*....|....*....
gi 1134295681 582 TKLFKKILTKAKVEQKEQFMkPEGVETIG 610
Cdd:TIGR02071 672 LQVYARYLSYQTPEPLLLVP-PEGIDWFG 699
PbpC COG4953
Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope ...
65-564 1.41e-95

Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443980 [Multi-domain]  Cd Length: 773  Bit Score: 312.54  E-value: 1.41e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681  65 VPVEQIPKYVQQSFIAVEDSRFYEHQGIDYPSIFRALYKDTLAGEKVEGGSTITQQLAKnvfLT--REKTFTRKMKEVAI 142
Cdd:COG4953    68 VPLDEVSPRYLQALLAYEDRRFYYHPGVNPLALLRAAWQNLRSGRIVSGGSTLTMQVAR---LLepRPRTLSGKLRQILR 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 143 SLQLEQKYTKQQILEMYMNHIYFGHGAYGIQAAAKLYFNKNVEDLTVEEGAMLAGLPKSPNGYSPYFSPEKSKERRDLVL 222
Cdd:COG4953   145 ALQLERRYSKDEILELYLNLAPYGGNIEGVEAASLAYFGKPPSRLSLAEAALLAVLPQAPSRRRPDRNPERARAARDRVL 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 223 SLMHKQGYLTAEE----------SVRYQGKTIA------LYKNLDENELaympyIDMVIDeaARLyglshQEVLrggytf 286
Cdd:COG4953   225 ARLAEAGVIDAEEaalallepvpARRRPLPQLAphlarrLLRQLPGGTR-----IRTTLD--AGL-----QRRL------ 286
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 287 vvpmdEKIQKVAYNQFQDarnfPGKEegaQGAFLLMDNRTGGIKAAIGGRKYvprgFNR--------VFAKRQPGSVLKP 358
Cdd:COG4953   287 -----ERLVRRYVRRLKQ----NGIH---NAAVLVVDNRTGEVLAYVGSADF----FDAsrqgqvdmVRALRSPGSTLKP 350
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 359 LIvYAPALETKKYNPYSLLTNERNSFEGYEPRNYNHAYSKEMTMYDAILESANVPAVSLLNELGVEEGKQYLEKGNVHIA 438
Cdd:COG4953   351 FL-YGLALDQGLIHPETLLADVPTSFGGYRPENFDGTFQGPVSAREALARSLNIPAVRLLEALGPARFYARLRRAGLRLL 429
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 439 DA-----GLSTALGGLknGVSTFDLVKMYRAFLANGAIIEPHVidkvlnrhgaVIGESPKVETKIFSKQTAWYMTKMLEG 513
Cdd:COG4953   430 LPpaehyGLSLILGGA--EVTLEELVGLYAALARGGEARPLRL----------LAGEPASPGRRLLSPGAAWLVRDILSD 497
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1134295681 514 V---VKEGTAKAGIYSGALAGKTGTTSlpnddnGARDMWFVGYTPNLVGAVWIG 564
Cdd:COG4953   498 VprpDGAFGWRALDSPPPIAWKTGTSY------GFRDAWAVGFTGRYTVGVWVG 545
Transgly pfam00912
Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of ...
51-226 8.81e-93

Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively. The transglycosylase domain catalyzes the polymerization of murein glycan chains.


Pssm-ID: 459993 [Multi-domain]  Cd Length: 177  Bit Score: 285.57  E-value: 8.81e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681  51 GKEITKLYVENRDLVPVEQIPKYVQQSFIAVEDSRFYEHQGIDYPSIFRALYKDTLAGEKVEGGSTITQQLAKNVFLTRE 130
Cdd:pfam00912   2 GTLLAELGEENREYVPLDDIPPALKNAVLAIEDRRFYEHGGVDPKGIARALLSNLRSGRIVQGGSTITQQLAKNLFLTPE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 131 KTFTRKMKEVAISLQLEQKYTKQQILEMYMNHIYFGHGAYGIQAAAKLYFNKNVEDLTVEEGAMLAGLPKSPNGYSPYFS 210
Cdd:pfam00912  82 RTLTRKLKEAVLALKLERRYSKDEILEAYLNTVYFGRGAYGIEAAARAYFGKDASDLTLAEAALLAGLPQAPSRYNPLRN 161
                         170
                  ....*....|....*.
gi 1134295681 211 PEKSKERRDLVLSLMH 226
Cdd:pfam00912 162 PERAKRRRNLVLDRMV 177
PBP_1c TIGR02073
penicillin-binding protein 1C; This subfamily of the penicillin binding proteins includes the ...
42-564 2.53e-80

penicillin-binding protein 1C; This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273954 [Multi-domain]  Cd Length: 727  Bit Score: 270.45  E-value: 2.53e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681  42 SSSRIVDQKGkEITKLYVEN----RDLVPVEQIPKYVQQSFIAVEDSRFYEHQGIDYPSIFRALYKDTLAGEKVEGGSTI 117
Cdd:TIGR02073  10 SSTVVLDRHG-TLLRALLANdgqwRLPVPLEDISPKFLQALLLYEDKRFYWHPGVNPLALLRAAWQNLTNGRRVSGGSTL 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 118 TQQLAKNVFLTREKTFTRKMKEVAISLQLEQKYTKQQILEMYMNHIYFGHGAYGIQAAAKLYFNKNVEDLTVEEGAMLAG 197
Cdd:TIGR02073  89 TMQLARLLDPELSRTLTGKLRQMWRAIQLEARYSKREILEAYLNLAPYGGNLEGLRAASLIYFGKEPSSLSLAEAALLAA 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 198 LPKSPNGYSPYFSPEKSKERRDLVLSLMHKQGYLTAEesvryQGKTIALYKNLDENELayMPYI-----DMVIDEAARLY 272
Cdd:TIGR02073 169 LPQAPSARRLDRLPKAAKAARDRLLDRMVEQGPDDSE-----QVALAALEPLPALPEP--LPQLaphfaLKLLRARPEIA 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 273 GlshqevlrggyTFVVPMDEKIQKVAYNQFQDARNFPGKEEGAQGAFLLMDNRTGGIKAAIGGRKYV-PRGFNRV---FA 348
Cdd:TIGR02073 242 S-----------VIVSTLDADLQRRLEELARRYLSALRPRGISNLAILVVDNRSGAVLAYVGSADFFdDSNSGQVdgvRA 310
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 349 KRQPGSVLKPLIvYAPALETKKYNPYSLLTNERNSFEGYEPRNYNHAYSKEMTMYDAILESANVPAVSLLNELGVEEGKQ 428
Cdd:TIGR02073 311 PRSPGSTLKPFL-YALALDDGLLHPDSLLKDVPLRFGDYAPENFDKTFHGPVPAREALARSLNIPAVRLLERVGPPRFAD 389
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 429 YLEKGNVHIAD-----AGLSTALGGlkNGVSTFDLVKMYRAfLANGAIIEPhvIDKVLNRhgavigESPKVETKIFSKQT 503
Cdd:TIGR02073 390 FLRQAGLNLLKpksdyYGLSLALGG--AEITLQDLANLYAM-LANQGLSGP--LRFLQTD------AKRPERERLLSPGA 458
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1134295681 504 AWYMTKMLEGVVKEGTA--KAGIYSG-ALAGKTGTTslpnddNGARDMWFVGYTPNLVGAVWIG 564
Cdd:TIGR02073 459 AWIVLDILKDRPRPDDTlpLSALPTRlPLAWKTGTS------YGFRDAWAAGVSGRYTIGVWVG 516
PRK14850 PRK14850
penicillin-binding protein 1b; Provisional
60-589 2.18e-68

penicillin-binding protein 1b; Provisional


Pssm-ID: 237835 [Multi-domain]  Cd Length: 764  Bit Score: 238.98  E-value: 2.18e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681  60 ENRDLVPVEQIPKYVQQSFIAVEDSRFYEHQGIDYPSIFRALYKDTLAGEKVEGGSTITQQLAKNVFLTREKTFTRKMKE 139
Cdd:PRK14850  155 KKRLFIPRNQYPEMLIKTLLAIEDKYFYEHDGIHLSSIGRAFLVNLMSGHTIQGGSTLTQQLVKNLFLTNTRSLWRKINE 234
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 140 VAISLQLEQKYTKQQILEMYMNHIYFGHGA----YGIQAAAKLYFNKNVEDLTVEEGAMLAGLPKSPNGYSPYFSPEKSK 215
Cdd:PRK14850  235 IYMALILDRFYSKDRILELYLNEVYLGQDGneqiRGFPLASIYYFGRPINELNLDQYALLVGMVKGASLYNPWTNPNLTL 314
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 216 ERRDLVLSLMHKQGYLTAEesvryqgktiaLYKNLDENELAYMP----------YIDMVIDEAARLYGLSHQEVlrGGYT 285
Cdd:PRK14850  315 KRRNLVLFLLYKQKVITRK-----------LYKDLCSRPLNVQSkgniisshpaFIQLVCEEFHKKIHYPFKNF--SGTK 381
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 286 FVVPMDEKIQKVAYNQFQDARNFPGKEEGAQ---GAFLLMDNRTGGIKAAIGGRKYVPRGFNR-VFAKRQPGSVLKPLIV 361
Cdd:PRK14850  382 IFTTLDYISQNAAEQAVKIGIPILKRKKRLKdleVAMVIIDRFSGEVRALIGSSKPEFNGYNRaLKARRSIGSLSKPITY 461
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 362 YAPALETKKYNPYSLLTN-----ERNSFEGYEPRNYNHAYSKEMTMYDAILESANVPAVSLLNELGVEEGKQYLEKGNV- 435
Cdd:PRK14850  462 LTALSQPEKYHLNTWISDtpisiKLDNGQYWTPKNNNFSFSGKVMLIDALIHSINIPTVHLSINLGLKKLVDSWILLGIs 541
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 436 --HIADAGlSTALGGLKngVSTFDLVKMYRAFLANGAIIEPHVIDKVLNRHGAVIGESPKVETKIFSKQTAWYMTKMLEG 513
Cdd:PRK14850  542 snYITPLP-SISLGAIN--LTPMEVAQVFQIIGSGGYKSSLSSIRSIISDDNKVLYQNFPQSKHVESSQASYLTLYAMQQ 618
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1134295681 514 VVKEGTAK--AGIYSG-ALAGKTGTTslpnddNGARDMWFVGYTPNLVGAVWIGYDrTDKEHQLQGeSASATKLFKKIL 589
Cdd:PRK14850  619 VVKSGTAKslGTIFKEfSLAGKTGTT------NNLVDSWFVGIDGKQVVITWIGRD-NNHTTKLYG-SSGAMKIYKRYL 689
mrcA PRK11636
penicillin-binding protein 1a; Provisional
53-566 1.16e-65

penicillin-binding protein 1a; Provisional


Pssm-ID: 183248 [Multi-domain]  Cd Length: 850  Bit Score: 232.71  E-value: 1.16e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681  53 EITKLYVENRDL-VPVEQIPKYVQQSFIAVEDSRFYEHQGIDYPSIFRALYKDTLAGEKVEGGSTITQQLAKNVFLTREK 131
Cdd:PRK11636   56 ELIAQYGEKRRIpLTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIFRAASVALFSGHASQGASTITQQLARNFFLSPER 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 132 TFTRKMKEVAISLQLEQKYTKQQILEMYMNHIYFGHGAYGIQAAAKLYFNKNVEDLTVEEGAMLAGLPKSPNGYSPYFSP 211
Cdd:PRK11636  136 TLMRKIKEAFLAIRIEQLLTKDEILELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLSEMAVIAGLPKAPSTFNPLYSM 215
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 212 EKSKERRDLVLSLMHKQGYLTAEEsvrY-QGKTIALYKNLDENELAY-MPYI-DMVIDEAARLYGlshQEVLRGGYTFVV 288
Cdd:PRK11636  216 DRAVARRNVVLSRMLDEGYITQAQ---YdQARSEPIVANYHAPEIAFsAPYLsEMVRQEMYNRYG---ENAYEDGYRVYT 289
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 289 PMDEKIQKVAYNQFQD---------------------------------------------------------------- 304
Cdd:PRK11636  290 TITRKVQQAAQQAVRNnvldydmrhgyrgpanvlwkvgesawdnkkitdtlkalptygpllpavvtsanpqeatamladg 369
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 305 ------------ARNFpgKEEGAQG-----------------------------------AFLLMDNRTGGIKAAIGGRK 337
Cdd:PRK11636  370 ssvalpmegvrwARPY--RSDTQQGptprkvtdvvqtgqqiwvrqvddawwlaqvpdvnsALVSINPQNGAVMALVGGFD 447
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 338 YVPRGFNRVF-AKRQPGSVLKPLIvYAPALEtKKYNPYSLLTN------ERNSFEGYEPRNYNHAYSKEMTMYDAILESA 410
Cdd:PRK11636  448 FNQSKFNRATqALRQVGSNIKPFL-YTAAMD-KGLTLASMLNDvpisrwDAGAGSDWRPKNSPPQYAGPIRLRQGLGQSK 525
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 411 NVPAVSLLNELGVEEGKQYLEKGN------VHIAdaglSTALGGlkngvSTFDLVKMYR--AFLANGA-IIEPHVIDKVL 481
Cdd:PRK11636  526 NVVMVRAMRAMGVDYAAEYLQRFGfpaqniVHTE----SLALGS-----ASFTPMQVARgyAVMANGGfLVDPYFISKIE 596
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 482 NRHGAVI------------------GESPK--------VETKIFSKQTAWYMTKM--LEGVVKEGTAKAG-------IYS 526
Cdd:PRK11636  597 NDQGGVIfeakpkvacpecdipviyGDTQKsnvlenddVENVATSQEQQNSSVPMpqLEQANQALVAQNGaqeyaphVIN 676
                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1134295681 527 GALA----------------------------------GKTGTTslpnddNGARDMWFVGYTPNLVGAVWIGYD 566
Cdd:PRK11636  677 TPLAfliksalntnifgepgwmgtgwragrdlkrrdigGKTGTT------NSSKDAWFSGYGPGVVTSVWIGFD 744
mrcB PRK09506
bifunctional glycosyl transferase/transpeptidase; Reviewed
52-566 2.24e-64

bifunctional glycosyl transferase/transpeptidase; Reviewed


Pssm-ID: 236544 [Multi-domain]  Cd Length: 830  Bit Score: 228.89  E-value: 2.24e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681  52 KEITKLYV---ENRDLVPVEQIPKYVQQSFIAVEDSRFYEHQGIDYPSIFRALYKDTLAGEKVEGGSTITQQLAKNVFLT 128
Cdd:PRK09506  198 RLITMLQSpngEQRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGGSTLTQQLVKNLFLS 277
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 129 REKTFTRKMKEVAISLQLEQKYTKQQILEMYMNHIYFGHGA----YGIQAAAKLYFNKNVEDLTVEEGAMLAGLPKSPNG 204
Cdd:PRK09506  278 NERSLWRKANEAYMALIMDARYSKDRILELYLNEVYLGQSGddqiRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASL 357
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 205 YSPYFSPEKSKERRDLVLSLMHKQGYLTAEesvryqgktiaLYKNLDENELAYMP----------YIDMVIDEAARLYGL 274
Cdd:PRK09506  358 YNPWRNPKLALERRNLVLRLLQQQQIIDQE-----------LYDMLSARPLGVQPkggvispqpaFMQMVRQELQAKLGD 426
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 275 SHQEvLRGGYTFVVpMDEKIQKVAYNQFQD-------ARNFPGKEegaqGAFLLMDNRTGGIKAAIGGRKYVPRGFNRVF 347
Cdd:PRK09506  427 KVKD-LSGVKIFTT-LDPVSQDAAEKAVEEgipalkkQRKLSDLE----TAMVVVDRFSGEVRAMVGGSEPQFAGYNRAM 500
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 348 -AKRQPGSVLKPLIvYAPAL-ETKKYNPYSLLTNERNSFEG-----YEPRNYNHAYSKEMTMYDAILESANVPAVSLLNE 420
Cdd:PRK09506  501 qARRSIGSLAKPAT-YLTALsQPDKYRLNTWIADAPISLRQpngqvWSPQNDDRRFSGRVMLVDALTRSMNVPTVNLGMA 579
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 421 LGVEEGKQYLEKGNV-----HIADAGLstaLGGLknGVSTFDLVKMYRAFLANGAIIEPHVIDKVLNRHGAVIGES-PKV 494
Cdd:PRK09506  580 LGLPAVTDTWIKLGVpkdqlNPVPAML---LGAL--NLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSfPQA 654
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1134295681 495 ETKIFSKqtAWYMT-KMLEGVVKEGTAKA--GIYSGA-LAGKTGTTslpnddNGARDMWFVGYTPNLVGAVWIGYD 566
Cdd:PRK09506  655 ERAVPAQ--AAYLTlYTMQQVVQRGTGRQlgAKYPNLhLAGKTGTT------NDLVDSWFAGIDGKEVTITWVGRD 722
PRK11240 PRK11240
penicillin-binding protein 1C; Provisional
65-564 7.09e-45

penicillin-binding protein 1C; Provisional


Pssm-ID: 183049 [Multi-domain]  Cd Length: 772  Bit Score: 172.19  E-value: 7.09e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681  65 VPVEQIPKYVQQSFIAVEDSRFYEHQGIDYPSIFRALYKDTLAGEKVEGGSTITQQLAKnVFLTREKTFTRKMKEVAISL 144
Cdd:PRK11240   65 VTIEDVSPRYLEALINYEDRWFWKHPGVNPFSVARAAWQDLTSGRVISGGSTLTMQVAR-LLDPHPRTFGGKIRQLWRAL 143
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 145 QLEQKYTKQQILEMYMNHIYFGHGAYGIQAAAKLYFNKNVEDLTVEEGAMLAGLPKSPNGYSPYFSPEKSKERRDLVLSL 224
Cdd:PRK11240  144 QLEWHLSKREILTLYLNRAPFGGTLQGIGAASWAYLGKSPANLSYAEAALLAVLPQAPSRLRPDRWPERAEAARNKVLER 223
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 225 MHKQGYLTAEESVRYQGKTIALYKNLdENELAymPYIdmvideAARLYGLSHQEVLRggytfvVPMDEKIQKvaynQFQD 304
Cdd:PRK11240  224 MAEQGVWSAEQVKESREEPVWLAPRQ-MPQLA--PLF------ARMMLGKSKSDKIV------TTLDAGLQR----RLED 284
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 305 -ARNFPGK-EEGAQGAFLLMDNRTGGIKAAIGGRKYV-PRGFNRV---FAKRQPGSVLKPLiVYAPALETKKYNPYSLLT 378
Cdd:PRK11240  285 lALNWKGRlPPRSSLAMIVVDHTDMAVRGWVGSVDLNdDSRFGHVdmvNAIRSPGSVLKPF-VYGLALDDGLIHPASLLQ 363
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 379 NERNSFEGYEPRNYNHAYSKEMTMYDAILESANVPAVSLLNELGVEEGKQYLEKGNVHI-----ADAGLSTALGGlkNGV 453
Cdd:PRK11240  364 DVPRRTGDYRPGNFDSGFHGPVSMSEALVRSLNLPAVQVLEAYGPKRFAAKLRNVGLPLylpagAEPNLSLILGG--AGA 441
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 454 STFDLVKMYRAFLangaiiephvidkvlnRHGAV-----IGESPKVETKIFSKQTAWYMTKMLEGVVKEGTAKAGIYSGA 528
Cdd:PRK11240  442 RLEDMVAAYSAFA----------------RHGKAaklrlQPDDPLLERPLMSPGAAWIIRRIMADEAQPLPDAALPRVVP 505
                         490       500       510
                  ....*....|....*....|....*....|....*.
gi 1134295681 529 LAGKTGTTSlpnddnGARDMWFVGYTPNLVGAVWIG 564
Cdd:PRK11240  506 LAWKTGTSY------GYRDAWAIGVNARYVIGIWTG 535
mono_pep_trsgly TIGR02070
monofunctional biosynthetic peptidoglycan transglycosylase; This family is one of the ...
4-218 1.29e-42

monofunctional biosynthetic peptidoglycan transglycosylase; This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain described by pfam00912 for transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are Proteobacteria that produce murein (peptidoglycan). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273951 [Multi-domain]  Cd Length: 224  Bit Score: 153.77  E-value: 1.29e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681   4 VKWTLLGGLATLVlAIVLYKLIVLAGGYMMDEKQLvfhsSSRIVDQKGKEItklyveNRDLVPVEQIPKYVQQSFIAVED 83
Cdd:TIGR02070   8 VAGVLLFNLAVFA-ALASWRFVPPPSTAFMVAEKL----ALWGQGDPTCGI------QHRWRPYDQISPNLKRAVIASED 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681  84 SRFYEHQGIDYPSIFRALYKDTLAGEKVEGGSTITQQLAKNVFLTREKTFTRKMKEVAISLQLEQKYTKQQILEMYMNHI 163
Cdd:TIGR02070  77 AKFVEHHGFDWEAIQDALEKNEKSGKVVRGGSTISQQLAKNLFLWSGRSYLRKGLEAWATWMLETWWSKQRILEVYLNSV 156
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 164 YFGHGAYGIQAAAKLYFNKNVEDLTVEEGAMLAGLPKSP-----NGYSPYFSPEKSKERR 218
Cdd:TIGR02070 157 EWGNGVFGAEAAARYYFKRSASNLTRGQAARLAAVLPNPkyydeNRPGPYVRRKATWILK 216
PRK13481 PRK13481
glycosyltransferase; Provisional
1-235 8.85e-41

glycosyltransferase; Provisional


Pssm-ID: 184078 [Multi-domain]  Cd Length: 232  Bit Score: 149.18  E-value: 8.85e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681   1 MKKVKWTLLGGLATLVLAIVLYKlivlagGYMmdekqlVFHSSSRIVDQKgKEITklyvENRDLVPVEQIPKYVQQSFIA 80
Cdd:PRK13481    1 KKKSKRILLKILLTILIIIALFI------GIM------YFLSTRDNVDEL-RKIE----NKSSFVSADNMPEYVKGAFIS 63
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681  81 VEDSRFYEHQGIDYPSIFRALYKdTLAGEKVEGGSTITQQLAKNVFLTREKTFTRKMKEVAISLQLEQKYTKQQILEMYM 160
Cdd:PRK13481   64 MEDERFYKHHGFDLKGTTRALFS-TISDRDVQGGSTITQQVVKNYFYDNERSFTRKVKELFVAHRVEKQYSKNEILSFYL 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 161 NHIYFGHGAYGIQAAAKLYF-------NKNVEDLTVEEGAMLAGLPKSPNGYSPYFSPEKSKERRDLVLSLMHKQGYLTA 233
Cdd:PRK13481  143 NNIYFGDNQYTLEGAANHYFgttvnknSTTMSHITVLQSAILASKVNAPSVYNINDMSENFTQRVSTNLEKMKQQNYINE 222

                  ..
gi 1134295681 234 EE 235
Cdd:PRK13481  223 TQ 224
Transpeptidase pfam00905
Penicillin binding protein transpeptidase domain; The active site serine (residue 337 in Swiss: ...
317-589 1.67e-31

Penicillin binding protein transpeptidase domain; The active site serine (residue 337 in Swiss:P14677) is conserved in all members of this family.


Pssm-ID: 425939 [Multi-domain]  Cd Length: 296  Bit Score: 124.84  E-value: 1.67e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 317 GAFLLMDNRTGGIKAAIGGRKYVPRGFNRVFAKR------QPGSVLKPLIVyAPALETKKYNPYSLLTNERNSFEGYEP- 389
Cdd:pfam00905   1 GSAVVLDPKTGEVLAMVGKPSYDPNGFIGPLRNRavtsryEPGSTFKPFTA-LAALDNGVLKPDETIFDWPGKQQGGKSi 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 390 RNYNHAYSKEMTMYDAILESANVPAVSLLNELGVEEGKQYLEK---GN-VHIADAG------------LSTALGGLKNGV 453
Cdd:pfam00905  80 GDWNQDQVGIGTLRQALEYSSNWYMQKLAQKLGADKLRSYLKKfgyGNkTGIGLPGenagyltpywleGATASFGIGLTI 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 454 STFDLVKMYRAFLANGAIIEPHVIDKVLNRhgavigESPKVETKI-FSKQTAWYMTKMLEGVVKE--GTAKAGIYSGALA 530
Cdd:pfam00905 160 TPLQQAQAYAAIANGGKLVPPHLVKSIEDK------VDPKVLNKLpISKSTAEKVKDMLRLVVNDgtGTGTAAVPGYKVA 233
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1134295681 531 GKTGTT-----SLPNDDNGARDMWFVGYT----PNLVGAVWIgydrtdKEHQLQGESASATKLFKKIL 589
Cdd:pfam00905 234 GKTGTAqvagpKGGGYYDGAQIGWFVGYApadnPKYAFAVLI------DDPKRYYGGKVAAPIFKDIL 295
FtsI COG0768
Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) [Cell ...
291-555 2.00e-27

Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) [Cell cycle control, cell division, chromosome partitioning, Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440531 [Multi-domain]  Cd Length: 568  Bit Score: 117.23  E-value: 2.00e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 291 DEKIQKVAYNQFQDARNfpgKEEGAQGAFLLMDNRTGGIKAA----------IGGRKYVPRgFNRVFAKRQ-PGSVLKPL 359
Cdd:COG0768   226 DSDLQKIAEEALKKAVE---EYKAKSGAVVVMDPKTGEILAMasypsfdpnlFVGGPDEPL-RNRAVQGTYePGSTFKPF 301
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 360 IVYApALETKKYNPYSLLtNERNSFE--GYEPRNYNHAYSKEMTMYDAILESANVPAVSLLNELGVEEGKQYLEK----- 432
Cdd:COG0768   302 TAAA-ALEEGVITPDTTF-DCPGYYRvgGRTIRDWDRGGHGTLTLTEALAKSSNVGFYKLALRLGIDKLYDYLKKfglgq 379
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 433 -----------GNVHIADAG-----LSTALG-GLKngVSTFDLVKMYrAFLAN-GAIIEPHVIDKVLNRHGAVIGESPKV 494
Cdd:COG0768   380 ktgidlpgeasGLLPSPKRWypgetATMSIGqGLS--VTPLQLAQAY-AAIANgGVLVKPHLVKEIVDPDGEVVKEEPEV 456
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1134295681 495 ETKIFSKQTAWYMTKMLEGVVKE--GTAK-AGIYSGALAGKTGTTSLPNDDNGARDM-----WFVGYTP 555
Cdd:COG0768   457 LRRVISPETAETVREGMEGVVNEpgGTARrAAIPGYRVAGKTGTAQVVDIGNGGYYKgrhiaSFVGFAP 525
pbp2_mrdA TIGR03423
penicillin-binding protein 2; Members of this protein family are penicillin-binding protein 2 ...
291-592 1.12e-13

penicillin-binding protein 2; Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 274573 [Multi-domain]  Cd Length: 592  Bit Score: 74.48  E-value: 1.12e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 291 DEKIQKVAYNQFQDARnfpgkeegaqGAFLLMDNRTGGIKAA--------------IGGRKYV-----PRG--FNRVFAK 349
Cdd:TIGR03423 233 DARLQQAAEKALGGRR----------GAVVVMDPRTGEILAMvstpsfdpnlfvdgISSKDYKallndPDRplLNRAIQG 302
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 350 RQ-PGSVLKPlIVYAPALETKKYNP-YSLLTNERNSFEGYEPRNYNHAYSKEMTMYDAILESANVPAVSLLNELGVEEGK 427
Cdd:TIGR03423 303 VYpPGSTFKP-VVALAALEEGVITPeTRIYCPGYFQLGGRRFRCWKRGGHGRVDLRKAIEESCDVYFYQLALRLGIDKIA 381
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 428 QYLEK----------------GNV--------------HIADAgLSTALGGLKNGVSTFDLVKMYrAFLAN-GAIIEPHV 476
Cdd:TIGR03423 382 EYAKRfgfgqktgidlpgeksGLVpsrewkrkrfgqpwYPGDT-LNVSIGQGYVLVTPLQLAVAT-AALANgGKLYKPHL 459
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134295681 477 IDKVLNRHGAVIGES-PKVETKI-FSKQTAWYMTKMLEGVVKE--GTA-KAGIYSGA-LAGKTGT--------TSLPNDD 542
Cdd:TIGR03423 460 VKSIEDPDGGVVRRTePEVLRPLpISPENLDVVREGMRDVVNGpgGTArRARLGLPYkMAGKTGTaqvvslkqGEKYDAE 539
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1134295681 543 NGARDM----WFVGYTP----NLVGAVWIgydrtdkEHQLQGESASAtKLFKKILTKA 592
Cdd:TIGR03423 540 QIPERLrdhaLFVAFAPydnpKIAVAVIV-------EHGGGGSSAAA-PIARKIMDAY 589
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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