|
Name |
Accession |
Description |
Interval |
E-value |
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1-371 |
0e+00 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 763.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 1 MNAKKSVGKPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPA 80
Cdd:PRK09452 4 LNKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 81 EQRHVNTVFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKP 160
Cdd:PRK09452 84 ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 161 KVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVAR 240
Cdd:PRK09452 164 KVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVAR 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 241 FIGEINVFEATAKSRQDEKRIVATIEGEESIIYHDKDVTPGQKLQVLLRPEDLRIEEIKESEQR-GIVGHIVERTYKGMT 319
Cdd:PRK09452 244 FIGEINIFDATVIERLDEQRVRANVEGRECNIYVNFAVEPGQKLHVLLRPEDLRVEEINDDEHAeGLIGYVRERNYKGMT 323
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 320 LDSVVELESGMRVMVSEFFNEDDPDVDHSLGQKVAVTWVESWEVVLEDEQEV 371
Cdd:PRK09452 324 LDSVVELENGKMVMVSEFFNEDDPDFDHSLGQKVAVTWVEGWEVVLADEEHK 375
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
9-367 |
0e+00 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 535.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 9 KPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTV 88
Cdd:COG3842 3 MPALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPEKRNVGMV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 89 FQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDES 168
Cdd:COG3842 83 FQDYALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRVLLLDEP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 169 LSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIGEINVF 248
Cdd:COG3842 163 LSALDAKLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPEEIYERPATRFVADFIGEANLL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 249 EATAKSRQDEkriVATIEGEESIIYHDKDVTPGQKLQVLLRPEDLRIEEikESEQRGIVGHIVERTYKGMTLDSVVELES 328
Cdd:COG3842 243 PGTVLGDEGG---GVRTGGRTLEVPADAGLAAGGPVTVAIRPEDIRLSP--EGPENGLPGTVEDVVFLGSHVRYRVRLGD 317
|
330 340 350
....*....|....*....|....*....|....*....
gi 1140790956 329 GMRVMVSEFFNEDDPdvdHSLGQKVAVTWVESWEVVLED 367
Cdd:COG3842 318 GQELVVRVPNRAALP---LEPGDRVGLSWDPEDVVVLPA 353
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
42-365 |
0e+00 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 508.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 42 ILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPR 121
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 122 VMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHD 201
Cdd:TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 202 QEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIGEINVFEATAKSRQDEKRIVATIEGEESIIYHDKDVTPG 281
Cdd:TIGR01187 161 QEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINVFEATVIERKSEQVVLAGVEGRRCDIYTDVPVEKD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 282 QKLQVLLRPEDLRIEEIKESEQ-RGIVGHIVERTYKGMTLDSVVELESGMRVMVSEFFNEDDPDVDHSLGQKVAVTWVES 360
Cdd:TIGR01187 241 QPLHVVLRPEKIVIEEEDEANSsNAIIGHVIDITYLGMTLEVHVRLETGQKVLVSEFFNEDDPHMSPSIGDRVGLTWHPG 320
|
....*
gi 1140790956 361 WEVVL 365
Cdd:TIGR01187 321 SEVVL 325
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
12-357 |
6.95e-151 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 429.49 E-value: 6.95e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVFQS 91
Cdd:COG3839 4 LELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKDRNIAMVFQS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 92 YALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSA 171
Cdd:COG3839 84 YALYPHMTVYENIAFPLKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKVFLLDEPLSN 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 172 LDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIGE--INVFE 249
Cdd:COG3839 164 LDAKLRVEMRAEIKRLHRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGTPEELYDRPANLFVAGFIGSppMNLLP 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 250 ATAKSRQdekrivATIEGEESIIYHDKDVTPGQKLQVLLRPEDLRIEEIKESEQRGIVgHIVERTykGMtlDSVVELESG 329
Cdd:COG3839 244 GTVEGGG------VRLGGVRLPLPAALAAAAGGEVTLGIRPEHLRLADEGDGGLEATV-EVVEPL--GS--ETLVHVRLG 312
|
330 340
....*....|....*....|....*...
gi 1140790956 330 MRVMVSEFfnedDPDVDHSLGQKVAVTW 357
Cdd:COG3839 313 GQELVARV----PGDTRLRPGDTVRLAF 336
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
12-243 |
1.38e-147 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 416.25 E-value: 1.38e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVFQS 91
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 92 YALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSA 171
Cdd:cd03300 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 172 LDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIG 243
Cdd:cd03300 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRFVADFIG 232
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
12-313 |
9.43e-130 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 375.64 E-value: 9.43e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNV-TQVPAEQRHVNTVFQ 90
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLfTNLPPRERRVGFVFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 91 SYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLS 170
Cdd:COG1118 83 HYALFPHMTVAENIAFGLRVRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEVLLLDEPFG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 171 ALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIGEINVFEA 250
Cdd:COG1118 163 ALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVYDRPATPFVARFLGCVNVLRG 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1140790956 251 TAKSRQdekrivATIEGeesIIYHDKDVTPGQKLQVLLRPEDLRIEEIKESEQ--RGIVGHIVER 313
Cdd:COG1118 243 RVIGGQ------LEADG---LTLPVAEPLPDGPAVAGVRPHDIEVSREPEGENtfPATVARVSEL 298
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
12-224 |
4.91e-119 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 343.35 E-value: 4.91e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVFQS 91
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 92 YALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSA 171
Cdd:cd03259 81 YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 172 LDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDG 224
Cdd:cd03259 161 LDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| PhnT2 |
TIGR03265 |
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ... |
10-328 |
1.21e-113 |
|
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 334.70 E-value: 1.21e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVF 89
Cdd:TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 90 QSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLePMAQRK-PHQLSGGQQQRIAIARAVVNKPKVLLLDES 168
Cdd:TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGL-PGSERKyPGQLSGGQQQRVALARALATSPGLLLLDEP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 169 LSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIGEINVF 248
Cdd:TIGR03265 162 LSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFVGEVNWL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 249 EATaksRQDEKRIVAtieGEESIIYHDKDVTPGQKLQVLLRPEDLRIEEIkESEQRGIVGHIVERTYKGMTLDSVVELES 328
Cdd:TIGR03265 242 PGT---RGGGSRARV---GGLTLACAPGLAQPGASVRLAVRPEDIRVSPA-GNAANLLLARVEDMEFLGAFYRLRLRLEG 314
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
12-295 |
2.64e-110 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 326.42 E-value: 2.64e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGK-EVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQV-PAEqRHVNTVF 89
Cdd:PRK11650 4 LKLQAVRKSYDGKtQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELePAD-RDIAMVF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 90 QSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESL 169
Cdd:PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 170 SALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIGE--INV 247
Cdd:PRK11650 163 SNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFVASFIGSpaMNL 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1140790956 248 FEATAkSRQDEKRIVATieGEESIIYHDKDVTPGQKLQVLLRPEDLRI 295
Cdd:PRK11650 243 LDGRV-SADGAAFELAG--GIALPLGGGYRQYAGRKLTLGIRPEHIAL 287
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
12-311 |
3.63e-107 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 318.20 E-value: 3.63e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVFQS 91
Cdd:PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 92 YALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSA 171
Cdd:PRK11432 87 YALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 172 LDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIGEINVFEAT 251
Cdd:PRK11432 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASFMGDANIFPAT 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 252 AKSRQdekrivATIEGEE-SIIYHDKDVTPGQKLQVLLRPEDLRIEEIKESEQRGIVGHIV 311
Cdd:PRK11432 247 LSGDY------VDIYGYRlPRPAAFAFNLPDGECTVGVRPEAITLSEQGEESQRCTIKHVA 301
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
12-224 |
1.24e-105 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 309.19 E-value: 1.24e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVFQS 91
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 92 YALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSA 171
Cdd:cd03301 81 YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 172 LDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDG 224
Cdd:cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
10-329 |
1.35e-104 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 312.54 E-value: 1.35e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVF 89
Cdd:PRK11607 18 PLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 90 QSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESL 169
Cdd:PRK11607 98 QSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPM 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 170 SALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIGEINVFE 249
Cdd:PRK11607 178 GALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFE 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 250 ATAKSRQDEKRIVATIEGEESI-IYHDKDVTPGQKLQVLLRPEDLRI-EEIKESEQRGIVGHIVERTYKGMTLDSVVELE 327
Cdd:PRK11607 258 GVLKERQEDGLVIDSPGLVHPLkVDADASVVDNVPVHVALRPEKIMLcEEPPADGCNFAVGEVIHIAYLGDLSIYHVRLK 337
|
..
gi 1140790956 328 SG 329
Cdd:PRK11607 338 SG 339
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
12-244 |
5.10e-104 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 306.19 E-value: 5.10e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVFQS 91
Cdd:cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 92 YALFPHMTVFENVAFGLRMQKV----PNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDE 167
Cdd:cd03296 83 YALFRHMTVFDNVAFGLRVKPRserpPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 168 SLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIGE 244
Cdd:cd03296 163 PFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFVYSFLGE 239
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
6-218 |
5.04e-98 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 291.61 E-value: 5.04e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 6 SVGKPVVQLTGISKSF----DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE 81
Cdd:COG1116 2 SAAAPALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGPD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 82 qrhVNTVFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPK 161
Cdd:COG1116 82 ---RGVVFQEPALLPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPE 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 162 VLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDG 218
Cdd:COG1116 159 VLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVDEAVFLADRVVVLSAR 215
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
12-313 |
9.65e-96 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 289.62 E-value: 9.65e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVFQS 91
Cdd:PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 92 YALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSA 171
Cdd:PRK11000 84 YALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 172 LDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIG--EINVFE 249
Cdd:PRK11000 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFIGspKMNFLP 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1140790956 250 ATAKSRQDEKRIVATIEGEESIIYHD-KDVTPGQKLQVLLRPEDLRIEEIKESEQRGIVgHIVER 313
Cdd:PRK11000 244 VKVTATAIEQVQVELPNRQQVWLPVEgRGVQVGANMSLGIRPEHLLPSDIADVTLEGEV-QVVEQ 307
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
12-256 |
1.11e-95 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 288.91 E-value: 1.11e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVFQS 91
Cdd:PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 92 YALFPHMTVFENVAFGLRM---QKVPNS-EIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDE 167
Cdd:PRK10851 83 YALFRHMTVFDNIAFGLTVlprRERPNAaAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 168 SLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIGEINV 247
Cdd:PRK10851 163 PFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEFMGEVNR 242
|
....*....
gi 1140790956 248 FEATAKSRQ 256
Cdd:PRK10851 243 LQGTIRGGQ 251
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
12-215 |
4.41e-94 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 280.13 E-value: 4.41e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGK----EVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPaeqRHVNT 87
Cdd:cd03293 1 LEVRNVSKTYGGGggavTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPG---PDRGY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 88 VFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDE 167
Cdd:cd03293 78 VFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDE 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1140790956 168 SLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVM 215
Cdd:cd03293 158 PFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
29-243 |
6.43e-86 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 259.96 E-value: 6.43e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 29 NLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVFQSYALFPHMTVFENVAFGL 108
Cdd:cd03299 17 NVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 109 RMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQ 188
Cdd:cd03299 97 KKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIR 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1140790956 189 RQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIG 243
Cdd:cd03299 177 KEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAEFLG 231
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
9-223 |
4.40e-83 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 252.27 E-value: 4.40e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 9 KPVVQLTGISKSF-DGKE---VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQR- 83
Cdd:COG1136 2 SPLLELRNLTKSYgTGEGevtALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELa 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 -----HVNTVFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVN 158
Cdd:COG1136 82 rlrrrHIGFVFQFFNLLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVN 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1140790956 159 KPKVLLLDESLSALDYKLRKQ-MQIeLKQLQRQLGITFIFVTHDqEEALSMSDRIIVMRDGVIEQD 223
Cdd:COG1136 162 RPKLILADEPTGNLDSKTGEEvLEL-LRELNRELGTTIVMVTHD-PELAARADRVIRLRDGRIVSD 225
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
29-326 |
7.15e-82 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 254.64 E-value: 7.15e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 29 NLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ------RHVNTVFQSYALFPHMTVFE 102
Cdd:COG4175 45 DASFDVEEGEIFVIMGLSGSGKSTLVRCLNRLIEPTAGEVLIDGEDITKLSKKElrelrrKKMSMVFQHFALLPHRTVLE 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 103 NVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQI 182
Cdd:COG4175 125 NVAFGLEIQGVPKAERRERAREALELVGLAGWEDSYPDELSGGMQQRVGLARALATDPDILLMDEAFSALDPLIRREMQD 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 183 ELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIGEIN---VFeaTAKS----- 254
Cdd:COG4175 205 ELLELQAKLKKTIVFITHDLDEALRLGDRIAIMKDGRIVQIGTPEEILTNPANDYVADFVEDVDrskVL--TAGSvmrpp 282
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1140790956 255 ----RQDEKRIVATIEGEESIIYHDKDVTPGQKLQVLLRPEDLRIEEIKESEQRGIVGHIVERTYKGMTLDSVVEL 326
Cdd:COG4175 283 eavvSEKDGPRVALRRMREEGISSLYVVDRDRRLLGVVTADDALEAVKGEKDLEEILLTDVPTVSPDTPLRDLLPL 358
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
12-244 |
2.13e-81 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 248.75 E-value: 2.13e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSF-DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNTV 88
Cdd:cd03295 1 IEFENVTKRYgGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVElrRKIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 89 FQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEP--MAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLD 166
Cdd:cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPaeFADRYPHELSGGQQQRVGVARALAADPPLLLMD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1140790956 167 ESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIGE 244
Cdd:cd03295 161 EPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAEFVGA 238
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
29-242 |
1.35e-78 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 242.55 E-value: 1.35e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 29 NLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ------RHVNTVFQSYALFPHMTVFE 102
Cdd:cd03294 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKElrelrrKKISMVFQSFALLPHRTVLE 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 103 NVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQI 182
Cdd:cd03294 122 NVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQD 201
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 183 ELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFI 242
Cdd:cd03294 202 ELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFF 261
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
10-242 |
6.18e-78 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 239.50 E-value: 6.18e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ-----RH 84
Cdd:COG1127 4 PMIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKElyelrRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 85 VNTVFQSYALFPHMTVFENVAFGLRMQ-KVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVL 163
Cdd:COG1127 84 IGMLFQGGALFDSLTVFENVAFPLREHtDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPEIL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 164 LLDESLSALD-------YKLrkqmqieLKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIyEEPKNL 236
Cdd:COG1127 164 LYDEPTAGLDpitsaviDEL-------IRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEEL-LASDDP 235
|
....*.
gi 1140790956 237 FVARFI 242
Cdd:COG1127 236 WVRQFL 241
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
8-234 |
5.92e-77 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 245.97 E-value: 5.92e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 8 GKPVVQLTGISKSFDGKE-----VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ 82
Cdd:COG1123 257 AEPLLEVRNLSKRYPVRGkggvrAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRS 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 83 -----RHVNTVFQ--SYALFPHMTVFENVAFGLRMQKV-PNSEIEPRVMDALKMVRLEP-MAQRKPHQLSGGQQQRIAIA 153
Cdd:COG1123 337 lrelrRRVQMVFQdpYSSLNPRMTVGDIIAEPLRLHGLlSRAERRERVAELLERVGLPPdLADRYPHELSGGQRQRVAIA 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 154 RAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEP 233
Cdd:COG1123 417 RALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFANP 496
|
.
gi 1140790956 234 K 234
Cdd:COG1123 497 Q 497
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
11-245 |
1.56e-76 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 236.04 E-value: 1.56e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE----QRHVN 86
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSKKDinklRRKVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 87 TVFQSYALFPHMTVFENVAFGLRM-QKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLL 165
Cdd:COG1126 81 MVFQQFNLFPHLTVLENVTLAPIKvKKMSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAMEPKVMLF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 166 DESLSALDYKLRKqmqiE----LKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARF 241
Cdd:COG1126 161 DEPTSALDPELVG----EvldvMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEFFENPQHERTRAF 235
|
....
gi 1140790956 242 IGEI 245
Cdd:COG1126 236 LSKV 239
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
12-220 |
3.92e-76 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 234.31 E-value: 3.92e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDG----KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQR---- 83
Cdd:cd03255 1 IELKNLSKTYGGggekVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELaafr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 --HVNTVFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPK 161
Cdd:cd03255 81 rrHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 162 VLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEAlSMSDRIIVMRDGVI 220
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-EYADRIIELRDGKI 218
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
29-244 |
1.73e-75 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 233.11 E-value: 1.73e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 29 NLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVFQSYALFPHMTVFENVAFGL 108
Cdd:COG3840 17 RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAERPVSMLFQENNLFPHLTVAQNIGLGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 109 RMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQ 188
Cdd:COG3840 97 RPGLKLTAEQRAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALDPALRQEMLDLVDELC 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1140790956 189 RQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIGE 244
Cdd:COG3840 177 RERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPPPALAAYLGI 232
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
12-218 |
1.63e-73 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 225.91 E-value: 1.63e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT----QVPAEQRHVNT 87
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTdledELPPLRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 88 VFQSYALFPHMTVFENVAFGlrmqkvpnseieprvmdalkmvrlepmaqrkphqLSGGQQQRIAIARAVVNKPKVLLLDE 167
Cdd:cd03229 81 VFQDFALFPHLTVLENIALG----------------------------------LSGGQQQRVALARALAMDPDVLLLDE 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 168 SLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDG 218
Cdd:cd03229 127 PTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
22-236 |
4.32e-71 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 221.82 E-value: 4.32e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNTVFQS--YALFpH 97
Cdd:COG1122 12 GGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRElrRKVGLVFQNpdDQLF-A 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 98 MTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLR 177
Cdd:COG1122 91 PTVEEDVAFGPENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVLVLDEPTAGLDPRGR 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 178 KQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNL 236
Cdd:COG1122 171 RELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDYELL 228
|
|
| proV |
TIGR01186 |
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine ... |
19-310 |
1.62e-70 |
|
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130254 [Multi-domain] Cd Length: 363 Bit Score: 224.73 E-value: 1.62e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 19 KSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT-QVPAEQRHVN-----TVFQSY 92
Cdd:TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMkQSPVELREVRrkkigMVFQQF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 93 ALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSAL 172
Cdd:TIGR01186 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 173 DYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIGEINVFEATA 252
Cdd:TIGR01186 161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFD 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 253 KSRQDEKRivatiegEESIIYHDKDVTPGQKLQVLlrpEDLRIEEIKESE-QRGIVGHI 310
Cdd:TIGR01186 241 AERIAQRM-------NTGPITKTADKGPRSALQLM---RDERVDSLYVVDrQNKLVGVV 289
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
29-224 |
1.78e-70 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 219.47 E-value: 1.78e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 29 NLDLNVNhGEFLTILGPSGCGKTTVLRMIAGFETADSGQILL-------AEQNVtQVPAEQRHVNTVFQSYALFPHMTVF 101
Cdd:cd03297 16 KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLngtvlfdSRKKI-NLPPQQRKIGLVFQQYALFPHLNVR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 102 ENVAFGLRmqKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQ 181
Cdd:cd03297 94 ENLAFGLK--RKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLL 171
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1140790956 182 IELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDG 224
Cdd:cd03297 172 PELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
11-224 |
6.48e-70 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 218.38 E-value: 6.48e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSF-DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ-----RH 84
Cdd:COG2884 1 MIRFENVSKRYpGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREipylrRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 85 VNTVFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLL 164
Cdd:COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELLL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 165 LDESLSALDYKLRKQ-MQIeLKQLQRqLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDG 224
Cdd:COG2884 161 ADEPTGNLDPETSWEiMEL-LEEINR-RGTTVLIATHDLELVDRMPKRVLELEDGRLVRDE 219
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
12-229 |
7.02e-69 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 216.21 E-value: 7.02e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQV-PAEQRHVNT--- 87
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLsEAELYRLRRrmg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 88 -VFQSYALFPHMTVFENVAFGLRMQ-KVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLL 165
Cdd:cd03261 81 mLFQSGALFDSLTVFENVAFPLREHtRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLY 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1140790956 166 DESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:cd03261 161 DEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
10-215 |
8.79e-68 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 214.34 E-value: 8.79e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDG----KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQvPAEQRHV 85
Cdd:COG4525 2 SMLTVRHVSVRYPGggqpQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTG-PGADRGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 86 ntVFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLL 165
Cdd:COG4525 81 --VFQKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLLM 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1140790956 166 DESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVM 215
Cdd:COG4525 159 DEPFGALDALTREQMQELLLDVWQRTGKGVFLITHSVEEALFLATRLVVM 208
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
12-220 |
6.72e-67 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 210.46 E-value: 6.72e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT----QVPAEQRHVNT 87
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTddkkNINELRQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 88 VFQSYALFPHMTVFENVAFGLR-MQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLD 166
Cdd:cd03262 81 VFQQFNLFPHLTVLENITLAPIkVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1140790956 167 ESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVI 220
Cdd:cd03262 161 EPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
12-235 |
2.67e-66 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 210.04 E-value: 2.67e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSF----DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVP--AEQRHV 85
Cdd:COG1124 2 LEVRNLSVSYgqggRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRrkAFRRRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 86 NTVFQSY--ALFPHMTVFENVAFGLRMQKVPnsEIEPRVMDALKMVRLEP-MAQRKPHQLSGGQQQRIAIARAVVNKPKV 162
Cdd:COG1124 82 QMVFQDPyaSLHPRHTVDRILAEPLRIHGLP--DREERIAELLEQVGLPPsFLDRYPHQLSGGQRQRVAIARALILEPEL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 163 LLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKN 235
Cdd:COG1124 160 LLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAGPKH 232
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
10-232 |
2.91e-65 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 207.60 E-value: 2.91e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSF-DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ-----R 83
Cdd:COG3638 1 PMLELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRAlrrlrR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 HVNTVFQSYALFPHMTVFENVAFG-------LR--MQKVPNSEIEpRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIAR 154
Cdd:COG3638 81 RIGMIFQQFNLVPRLSVLTNVLAGrlgrtstWRslLGLFPPEDRE-RALEALERVGLADKAYQRADQLSGGQQQRVAIAR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 155 AVVNKPKVLLLDESLSALDYKLRKQ-MQIeLKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:COG3638 160 ALVQEPKLILADEPVASLDPKTARQvMDL-LRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVVFDGPPAELTDA 237
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
12-232 |
1.53e-64 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 205.30 E-value: 1.53e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE-QRHVNTVFQ 90
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEvRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 91 SYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLS 170
Cdd:COG1131 81 EPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTS 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 171 ALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:COG1131 161 GLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKAR 221
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
13-218 |
1.95e-64 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 203.85 E-value: 1.95e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 13 QLTGISKSFDGKE--VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNTV 88
Cdd:cd03225 1 ELKNLSFSYPDGArpALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKElrRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 89 FQsyalFP-HM----TVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVL 163
Cdd:cd03225 81 FQ----NPdDQffgpTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDIL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1140790956 164 LLDESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDG 218
Cdd:cd03225 157 LLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDG 210
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
28-292 |
4.99e-64 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 207.65 E-value: 4.99e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 28 GNLDLNVN----HGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQ------NVTQVPAEQRHVNTVFQSYALFPH 97
Cdd:COG4148 12 GGFTLDVDftlpGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEvlqdsaRGIFLPPHRRRIGYVFQEARLFPH 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 98 MTVFENVAFGLRMQKVPNSEIEPRvmDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLR 177
Cdd:COG4148 92 LSVRGNLLYGRKRAPRAERRISFD--EVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 178 KQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIGEINVFEATAKSRQD 257
Cdd:COG4148 170 AEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRPDLLPLAGGEEAGSVLEATVAAHDP 249
|
250 260 270
....*....|....*....|....*....|....*
gi 1140790956 258 EKRIVATIEGEESIIYHDKDVTPGQKLQVLLRPED 292
Cdd:COG4148 250 DYGLTRLALGGGRLWVPRLDLPPGTRVRVRIRARD 284
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
11-222 |
3.68e-63 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 201.20 E-value: 3.68e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFDGK----EVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQR--- 83
Cdd:cd03257 1 LLEVKNLSVSFPTGggsvKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRkir 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 --HVNTVFQSY--ALFPHMTVFENVAFGLRMQKVPN--SEIEPRVMDALKMVRLEP-MAQRKPHQLSGGQQQRIAIARAV 156
Cdd:cd03257 81 rkEIQMVFQDPmsSLNPRMTIGEQIAEPLRIHGKLSkkEARKEAVLLLLVGVGLPEeVLNRYPHELSGGQRQRVAIARAL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 157 VNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDG-VIEQ 222
Cdd:cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGkIVEE 227
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
12-256 |
2.44e-62 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 203.00 E-value: 2.44e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGK----EVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ----- 82
Cdd:COG1135 2 IELENLSKTFPTKggpvTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERElraar 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 83 RHVNTVFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKV 162
Cdd:COG1135 82 RKIGMIFQHFNLLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPKV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 163 LLLDESLSALDYK-------LrkqmqieLKQLQRQLGITFIFVTHDqeealsMS------DRIIVMRDGVIEQDGTPREI 229
Cdd:COG1135 162 LLCDEATSALDPEttrsildL-------LKDINRELGLTIVLITHE------MDvvrricDRVAVLENGRIVEQGPVLDV 228
|
250 260
....*....|....*....|....*..
gi 1140790956 230 YEEPKNLFVARFIGEINVFEATAKSRQ 256
Cdd:COG1135 229 FANPQSELTRRFLPTVLNDELPEELLA 255
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
9-236 |
6.08e-62 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 206.68 E-value: 6.08e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 9 KPVVQLTGISKSFDG--KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAG---FETADSGQILLAEQNVTQVPAEQR 83
Cdd:COG1123 2 TPLLEVRDLSVRYPGgdVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGllpHGGRISGEVLLDGRDLLELSEALR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 --HVNTVFQS--YALFPhMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNK 159
Cdd:COG1123 82 grRIGMVFQDpmTQLNP-VTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 160 PKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNL 236
Cdd:COG1123 161 PDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPQAL 237
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
11-229 |
8.42e-62 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 198.73 E-value: 8.42e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNTV 88
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRElaRRIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 89 FQSYALFPHMTVFENVAFG----LRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLL 164
Cdd:COG1120 81 PQEPPAPFGLTVRELVALGryphLGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 165 LDESLSALDykLRKQMQI--ELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:COG1120 161 LDEPTSHLD--LAHQLEVleLLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEV 225
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
11-234 |
3.39e-61 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 196.65 E-value: 3.39e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFDGK----EVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVP-----AE 81
Cdd:cd03258 1 MIELKNVSKVFGDTggkvTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSgkelrKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 82 QRHVNTVFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPK 161
Cdd:cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 162 VLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPK 234
Cdd:cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANPQ 233
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
22-217 |
1.12e-58 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 189.23 E-value: 1.12e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETAD---SGQILLAEQNVTQVPAEQRHVNTVFQSYALFPHM 98
Cdd:COG4136 12 GGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAfsaSGEVLLNGRRLTALPAEQRRIGILFQDDLLFPHL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 99 TVFENVAFGLRmQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRK 178
Cdd:COG4136 92 SVGENLAFALP-PTIGRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSKLDAALRA 170
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1140790956 179 QM-QIELKQLqRQLGITFIFVTHDQEEALSMSdRIIVMRD 217
Cdd:COG4136 171 QFrEFVFEQI-RQRGIPALLVTHDEEDAPAAG-RVLDLGN 208
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
8-234 |
2.08e-57 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 189.94 E-value: 2.08e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 8 GKPVVQLTGISKSFdgkEVIGNL--------------DLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQ 73
Cdd:COG4608 4 AEPLLEVRDLKKHF---PVRGGLfgrtvgvvkavdgvSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 74 NVTQVPAEQ-----RHVNTVFQ-SYA-LFPHMTVFENVAFGLRMQKV-PNSEIEPRVMDALKMVRLEP-MAQRKPHQLSG 144
Cdd:COG4608 81 DITGLSGRElrplrRRMQMVFQdPYAsLNPRMTVGDIIAEPLRIHGLaSKAERRERVAELLELVGLRPeHADRYPHEFSG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 145 GQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDqeeaLSM----SDRIIVMRDGVI 220
Cdd:COG4608 161 GQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHD----LSVvrhiSDRVAVMYLGKI 236
|
250
....*....|....
gi 1140790956 221 EQDGTPREIYEEPK 234
Cdd:COG4608 237 VEIAPRDELYARPL 250
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
13-220 |
9.46e-57 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 184.25 E-value: 9.46e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 13 QLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNTVFQ 90
Cdd:COG4619 2 ELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEwrRQVAYVPQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 91 SYALFPhMTVFENVAFGLRMQKVPNSeiEPRVMDALKMVRLEP-MAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESL 169
Cdd:COG4619 82 EPALWG-GTVRDNLPFPFQLRERKFD--RERALELLERLGLPPdILDKPVERLSGGERQRLALIRALLLQPDVLLLDEPT 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 170 SALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVI 220
Cdd:COG4619 159 SALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
12-236 |
1.82e-56 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 185.33 E-value: 1.82e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKE--VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQIL------LAEQNVTQVpaeQR 83
Cdd:TIGR04520 1 IEVENVSFSYPESEkpALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTvdgldtLDEENLWEI---RK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 HVNTVFQSyalfPH-----MTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVN 158
Cdd:TIGR04520 78 KVGMVFQN----PDnqfvgATVEDDVAFGLENLGVPREEMRKRVDEALKLVGMEDFRDREPHLLSGGQKQRVAIAGVLAM 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 159 KPKVLLLDESLSALDYKLRKQ-MQIeLKQLQRQLGITFIFVTHDQEEALsMSDRIIVMRDGVIEQDGTPREIYEEPKNL 236
Cdd:TIGR04520 154 RPDIIILDEATSMLDPKGRKEvLET-IRKLNKEEGITVISITHDMEEAV-LADRVIVMNKGKIVAEGTPREIFSQVELL 230
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
11-235 |
2.42e-56 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 184.14 E-value: 2.42e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVN---- 86
Cdd:PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRqeag 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 87 TVFQSYALFPHMTVFENVAFG-LRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLL 165
Cdd:PRK09493 81 MVFQQFYLFPHLTALENVMFGpLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 166 DESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKN 235
Cdd:PRK09493 161 DEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPS 229
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
13-232 |
2.84e-56 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 183.92 E-value: 2.84e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 13 QLTGISKSF-DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVP-----AEQRHVN 86
Cdd:cd03256 2 EVENLSKTYpNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKgkalrQLRRQIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 87 TVFQSYALFPHMTVFENVAFGL--RMQKV-----PNSEIE-PRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVN 158
Cdd:cd03256 82 MIFQQFNLIERLSVLENVLSGRlgRRSTWrslfgLFPKEEkQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQ 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1140790956 159 KPKVLLLDESLSALDYKLRKQ-MQIeLKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:cd03256 162 QPKLILADEPVASLDPASSRQvMDL-LKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDE 235
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
13-218 |
1.53e-55 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 182.59 E-value: 1.53e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 13 QLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQvPAEQRHVntVFQSY 92
Cdd:PRK11248 3 QISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG-PGAERGV--VFQNE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 93 ALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSAL 172
Cdd:PRK11248 80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1140790956 173 DYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDG 218
Cdd:PRK11248 160 DAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
30-224 |
8.79e-55 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 179.23 E-value: 8.79e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 30 LDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVFQSYALFPHMTVFENVAFGLR 109
Cdd:cd03298 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 110 MQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQR 189
Cdd:cd03298 97 PGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA 176
|
170 180 190
....*....|....*....|....*....|....*
gi 1140790956 190 QLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDG 224
Cdd:cd03298 177 ETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
8-227 |
2.13e-54 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 179.87 E-value: 2.13e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 8 GKPVVqLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRhvnT 87
Cdd:PRK11247 10 GTPLL-LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTR---L 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 88 VFQSYALFPHMTVFENVAFGLRmqkvpnSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDE 167
Cdd:PRK11247 86 MFQDARLLPWKKVIDNVGLGLK------GQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 168 SLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGT---PR 227
Cdd:PRK11247 160 PLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTvdlPR 222
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
11-245 |
2.91e-54 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 181.92 E-value: 2.91e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFD--GKEVIG--NLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ---- 82
Cdd:PRK11153 1 MIELKNISKVFPqgGRTIHAlnNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKElrka 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 83 -RHVNTVFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPK 161
Cdd:PRK11153 81 rRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 162 VLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDG-VIEQdGTPREIYEEPKNLFVAR 240
Cdd:PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGrLVEQ-GTVSEVFSHPKHPLTRE 239
|
....*
gi 1140790956 241 FIGEI 245
Cdd:PRK11153 240 FIQST 244
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
16-232 |
6.87e-54 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 177.88 E-value: 6.87e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 16 GISKSF-DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE-----QRHVNTVF 89
Cdd:TIGR02315 6 NLSKVYpNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKklrklRRRIGMIF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 90 QSYALFPHMTVFENVAFG-------LRM--QKVPNSEIEpRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKP 160
Cdd:TIGR02315 86 QHYNLIERLTVLENVLHGrlgykptWRSllGRFSEEDKE-RALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQP 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 161 KVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:TIGR02315 165 DLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELDDE 236
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
31-229 |
7.16e-54 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 177.47 E-value: 7.16e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 31 DLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVFQSYALFPHMTVFENVAFGLRM 110
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNP 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 111 QKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQ 190
Cdd:PRK10771 99 GLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQE 178
|
170 180 190
....*....|....*....|....*....|....*....
gi 1140790956 191 LGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:PRK10771 179 RQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDEL 217
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
10-228 |
9.71e-54 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 177.24 E-value: 9.71e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKE----VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQR-- 83
Cdd:COG4181 7 PIIELRGLTKTVGTGAgeltILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEDARar 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 ----HVNTVFQSYALFPHMTVFENVAFGLRMQKVPNSEiePRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNK 159
Cdd:COG4181 87 lrarHVGFVFQSFQLLPTLTALENVMLPLELAGRRDAR--ARARALLERVGLGHRLDHYPAQLSGGEQQRVALARAFATE 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 160 PKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEAlSMSDRIIVMRDGVIEQDGTPRE 228
Cdd:COG4181 165 PAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALA-ARCDRVLRLRAGRLVEDTAATA 232
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
13-232 |
1.49e-53 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 176.97 E-value: 1.49e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 13 QLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE-QRHVNTVFQS 91
Cdd:COG4555 3 EVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREaRRQIGVLPDE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 92 YALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSA 171
Cdd:COG4555 83 RGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTNG 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 172 LDYKLRKQMQIELKQLqRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:COG4555 163 LDVMARRLLREILRAL-KKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREE 222
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
8-229 |
1.73e-53 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 177.15 E-value: 1.73e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 8 GKPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRH--- 84
Cdd:COG0411 1 SDPLLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIArlg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 85 -VNTvFQSYALFPHMTVFENVAFG-------------LRMQKVPNSEIEPR--VMDALKMVRLEPMAQRKPHQLSGGQQQ 148
Cdd:COG0411 81 iART-FQNPRLFPELTVLENVLVAaharlgrgllaalLRLPRARREEREARerAEELLERVGLADRADEPAGNLSYGQQR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 149 RIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPRE 228
Cdd:COG0411 160 RLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAE 239
|
.
gi 1140790956 229 I 229
Cdd:COG0411 240 V 240
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
12-229 |
2.77e-53 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 175.83 E-value: 2.77e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFE-----TADSGQILLAEQNV----TQVPAEQ 82
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNdlipgAPDEGEVLLDGKDIydldVDVLELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 83 RHVNTVFQSYALFPhMTVFENVAFGLRMQKV-PNSEIEPRVMDALKMVRLEPMAQRKPH--QLSGGQQQRIAIARAVVNK 159
Cdd:cd03260 81 RRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIkLKEELDERVEEALRKAALWDEVKDRLHalGLSGGQQQRLCLARALANE 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 160 PKVLLLDESLSALDykLRKQMQIE--LKQLQRQlgITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:cd03260 160 PEVLLLDEPTSALD--PISTAKIEelIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
27-218 |
3.18e-53 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 175.73 E-value: 3.18e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 27 IGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQvPAEQRHVntVFQSYALFPHMTVFENVAF 106
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITE-PGPDRMV--VFQNYSLLPWLTVRENIAL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 107 GLR--MQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIEL 184
Cdd:TIGR01184 78 AVDrvLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157
|
170 180 190
....*....|....*....|....*....|....
gi 1140790956 185 KQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDG 218
Cdd:TIGR01184 158 MQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
30-336 |
6.90e-53 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 178.77 E-value: 6.90e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 30 LDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILL-------AEQNVtQVPAEQRHVNTVFQSYALFPHMTVFE 102
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLngrtlfdSRKGI-FLPPEKRRIGYVFQEARLFPHLSVRG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 103 NVAFGLRMQKVPNSEIEP-RVMDalkMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQ 181
Cdd:TIGR02142 95 NLRYGMKRARPSERRISFeRVIE---LLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 182 IELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPkNLFVARFIGEINVFEATAKSRQDEKRI 261
Cdd:TIGR02142 172 PYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP-DLPWLAREDQGSLIEGVVAEHDQHYGL 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 262 VATIEGEESIIYHDKDVTPGQKLQVLL----------RPEDLRIEEIKESEQRGIvghivERTYKGMTLdsvVELESGMR 331
Cdd:TIGR02142 251 TALRLGGGHLWVPENLGPTGARLRLRVpardvslalqKPEATSIRNILPARVVEI-----EDSDIGRVG---VVLESGGK 322
|
....*
gi 1140790956 332 VMVSE 336
Cdd:TIGR02142 323 TLWAR 327
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
13-229 |
1.06e-52 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 174.55 E-value: 1.06e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 13 QLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRH---VNTVF 89
Cdd:cd03219 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIArlgIGRTF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 90 QSYALFPHMTVFENVAFGLRMQKVPN----------SEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNK 159
Cdd:cd03219 82 QIPRLFPELTVLENVMVAAQARTGSGlllararreeREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATD 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 160 PKVLLLDESLSALDYKLRKQMQIELKQLqRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:cd03219 162 PKLLLLDEPAAGLNPEETEELAELIREL-RERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
10-233 |
7.00e-52 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 172.58 E-value: 7.00e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQ-------VPaeQ 82
Cdd:COG1121 5 PAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRarrrigyVP--Q 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 83 RHvntvfQSYALFPhMTVFENVAFGL----RMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVN 158
Cdd:COG1121 83 RA-----EVDWDFP-ITVRDVVLMGRygrrGLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQ 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1140790956 159 KPKVLLLDESLSALDYKLRKQ-MQIeLKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEqDGTPREIYEEP 233
Cdd:COG1121 157 DPDLLLLDEPFAGVDAATEEAlYEL-LRELRRE-GKTILVVTHDLGAVREYFDRVLLLNRGLVA-HGPPEEVLTPE 229
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
22-231 |
1.07e-51 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 183.11 E-value: 1.07e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNTVFQSYALFpHMT 99
Cdd:COG2274 486 DSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASlrRQIGVVLQDVFLF-SGT 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 100 VFENVAFGLrmqkvPNSEIEpRVMDALKMVRLEPMAQRKPH-----------QLSGGQQQRIAIARAVVNKPKVLLLDES 168
Cdd:COG2274 565 IRENITLGD-----PDATDE-EIIEAARLAGLHDFIEALPMgydtvvgeggsNLSGGQRQRLAIARALLRNPRILILDEA 638
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 169 LSALDYKLRKQMQIELKQLQRqlGITFIFVTHDqEEALSMSDRIIVMRDGVIEQDGTPREIYE 231
Cdd:COG2274 639 TSALDAETEAIILENLRRLLK--GRTVIIIAHR-LSTIRLADRIIVLDKGRIVEDGTHEELLA 698
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
29-234 |
1.11e-51 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 179.88 E-value: 1.11e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 29 NLDLNVNHGEFLTILGPSGCGKTT----VLRMIAGfetadSGQILLAEQNVTQVPAEQ-----RHVNTVFQS-YA-LFPH 97
Cdd:COG4172 304 GVSLTLRRGETLGLVGESGSGKSTlglaLLRLIPS-----EGEIRFDGQDLDGLSRRAlrplrRRMQVVFQDpFGsLSPR 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 98 MTVFENVAFGLRMQKVPNS--EIEPRVMDALKMVRLEP-MAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDY 174
Cdd:COG4172 379 MTVGQIIAEGLRVHGPGLSaaERRARVAEALEEVGLDPaARHRYPHEFSGGQRQRIAIARALILEPKLLVLDEPTSALDV 458
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 175 KLRKQMqIEL-KQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDG-VIEQdGTPREIYEEPK 234
Cdd:COG4172 459 SVQAQI-LDLlRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGkVVEQ-GPTEQVFDAPQ 518
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
13-224 |
3.81e-51 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 168.77 E-value: 3.81e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 13 QLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNTVFQ 90
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKElaRKIAYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 91 syalfphmtvfenvafglrmqkvpnseieprvmdALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLS 170
Cdd:cd03214 81 ----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTS 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1140790956 171 ALDYKlrkqMQIE----LKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDG 224
Cdd:cd03214 127 HLDIA----HQIEllelLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
12-234 |
4.93e-51 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 170.58 E-value: 4.93e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQ--NVTQVPAEQ------R 83
Cdd:COG4161 3 IQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHqfDFSQKPSEKairllrQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 HVNTVFQSYALFPHMTVFEN-VAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKV 162
Cdd:COG4161 83 KVGMVFQQYNLWPHLTVMENlIEAPCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQV 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 163 LLLDESLSALDYKLRKQMQIELKQLQrQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTpREIYEEPK 234
Cdd:COG4161 163 LLFDEPTAALDPEITAQVVEIIRELS-QTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGD-ASHFTQPQ 232
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
11-234 |
5.75e-51 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 172.55 E-value: 5.75e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFDGKE----VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFE---TADSGQILLAEQNVTQVPAEQ- 82
Cdd:COG0444 1 LLEVRNLKVYFPTRRgvvkAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLpppGITSGEILFDGEDLLKLSEKEl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 83 -----RHVNTVFQ-SY-ALFPHMTVFENVAFGLRM-QKVPNSEIEPRVMDALKMVRLEPMAQRK---PHQLSGGQQQRIA 151
Cdd:COG0444 81 rkirgREIQMIFQdPMtSLNPVMTVGDQIAEPLRIhGGLSKAEARERAIELLERVGLPDPERRLdryPHELSGGMRQRVM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 152 IARAVVNKPKVLLLDESLSALDykLRKQMQI--ELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDG-VIEQdGTPRE 228
Cdd:COG0444 161 IARALALEPKLLIADEPTTALD--VTIQAQIlnLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGrIVEE-GPVEE 237
|
....*.
gi 1140790956 229 IYEEPK 234
Cdd:COG0444 238 LFENPR 243
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
12-220 |
7.10e-51 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 167.57 E-value: 7.10e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE-QRHVNTVFQ 90
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEvKRRIGYLPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 91 SYALFPHMTVFENVafglrmqkvpnseieprvmdalkmvrlepmaqrkphQLSGGQQQRIAIARAVVNKPKVLLLDESLS 170
Cdd:cd03230 81 EPSLYENLTVRENL------------------------------------KLSGGMKQRLALAQALLHDPELLILDEPTS 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1140790956 171 ALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVI 220
Cdd:cd03230 125 GLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
10-217 |
1.00e-49 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 165.73 E-value: 1.00e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE-QRHVNTV 88
Cdd:COG4133 1 MMLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDyRRRLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 89 FQSYALFPHMTVFENVAFGLRMQKVPNSEIepRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDES 168
Cdd:COG4133 81 GHADGLKPELTVRENLRFWAALYGLRADRE--AIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEP 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 169 LSALDyklrKQMQIELKQL---QRQLGITFIFVTHDQEEALsmSDRIIVMRD 217
Cdd:COG4133 159 FTALD----AAGVALLAELiaaHLARGGAVLLTTHQPLELA--AARVLDLGD 204
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
9-231 |
2.22e-49 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 167.50 E-value: 2.22e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 9 KPVVQLTGISKSFDGKE--VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQI-----LLAEQNVTQVpae 81
Cdd:PRK13635 3 EEIIRVEHISFRYPDAAtyALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTItvggmVLSEETVWDV--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 82 QRHVNTVFQSY-ALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKP 160
Cdd:PRK13635 80 RRQVGMVFQNPdNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQP 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 161 KVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSmSDRIIVMRDGVIEQDGTPREIYE 231
Cdd:PRK13635 160 DIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFK 229
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
31-224 |
2.46e-49 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 165.03 E-value: 2.46e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 31 DLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVFQSYALFPHMTVFENVAFGLRM 110
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 111 QKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQ 190
Cdd:TIGR01277 98 GLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE 177
|
170 180 190
....*....|....*....|....*....|....
gi 1140790956 191 LGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDG 224
Cdd:TIGR01277 178 RQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
10-242 |
7.23e-49 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 165.36 E-value: 7.23e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT--------QVPAE 81
Cdd:COG4598 7 PALEVRDLHKSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIRlkpdrdgeLVPAD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 82 QRHVNT-------VFQSYALFPHMTVFENVAFG-LRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIA 153
Cdd:COG4598 87 RRQLQRirtrlgmVFQSFNLWSHMTVLENVIEApVHVLGRPKAEAIERAEALLAKVGLADKRDAYPAHLSGGQQQRAAIA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 154 RAVVNKPKVLLLDESLSALDyklrKQMQIELKQLQRQL---GITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIY 230
Cdd:COG4598 167 RALAMEPEVMLFDEPTSALD----PELVGEVLKVMRDLaeeGRTMLVVTHEMGFARDVSSHVVFLHQGRIEEQGPPAEVF 242
|
250
....*....|..
gi 1140790956 231 EEPKNLFVARFI 242
Cdd:COG4598 243 GNPKSERLRQFL 254
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
12-234 |
9.71e-49 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 164.42 E-value: 9.71e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQ--NVTQVPAEQ------R 83
Cdd:PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfDFSKTPSDKairelrR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 HVNTVFQSYALFPHMTVFEN-VAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKV 162
Cdd:PRK11124 83 NVGMVFQQYNLWPHLTVQQNlIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQV 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 163 LLLDESLSALDYKLRKQMQIELKQLQrQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTpREIYEEPK 234
Cdd:PRK11124 163 LLFDEPTAALDPEITAQIVSIIRELA-ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD-ASCFTQPQ 232
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
29-220 |
2.37e-48 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 162.58 E-value: 2.37e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 29 NLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT-----QVPAEQRHVNTVFQSYALFPHMTVFEN 103
Cdd:cd03292 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSdlrgrAIPYLRRKIGVVFQDFRLLPDRNVYEN 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 104 VAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIE 183
Cdd:cd03292 99 VAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNL 178
|
170 180 190
....*....|....*....|....*....|....*..
gi 1140790956 184 LKQLQrQLGITFIFVTHDQEEALSMSDRIIVMRDGVI 220
Cdd:cd03292 179 LKKIN-KAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
29-167 |
7.11e-48 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 159.35 E-value: 7.11e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 29 NLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQ--VPAEQRHVNTVFQSYALFPHMTVFENVAF 106
Cdd:pfam00005 3 NVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDdeRKSLRKEIGYVFQDPQLFPRLTVRENLRL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1140790956 107 GLRMQKVPNSEIEPRVMDALKMVRLEPMAQRK----PHQLSGGQQQRIAIARAVVNKPKVLLLDE 167
Cdd:pfam00005 83 GLLLKGLSKREKDARAEEALEKLGLGDLADRPvgerPGTLSGGQRQRVAIARALLTKPKLLLLDE 147
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
27-267 |
6.61e-47 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 164.44 E-value: 6.61e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 27 IGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVP-AEQRHVN-----TVFQSYALFPHMTV 100
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISdAELREVRrkkiaMVFQSFALMPHMTV 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 101 FENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQM 180
Cdd:PRK10070 124 LDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEM 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 181 QIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIGEIN---VFEATAKSRQD 257
Cdd:PRK10070 204 QDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDisqVFSAKDIARRT 283
|
250
....*....|
gi 1140790956 258 EKRIVATIEG 267
Cdd:PRK10070 284 PNGLIRKTPG 293
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
12-243 |
1.07e-46 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 159.53 E-value: 1.07e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAE----------QNVTQVPAE 81
Cdd:PRK11264 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDitidtarslsQQKGLIRQL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 82 QRHVNTVFQSYALFPHMTVFENVAFG-LRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKP 160
Cdd:PRK11264 84 RQHVGFVFQNFNLFPHRTVLENIIEGpVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 161 KVLLLDESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKN----L 236
Cdd:PRK11264 164 EVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQprtrQ 242
|
....*..
gi 1140790956 237 FVARFIG 243
Cdd:PRK11264 243 FLEKFLL 249
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
10-233 |
3.61e-46 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 165.71 E-value: 3.61e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDG--KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHV 85
Cdd:COG4987 332 PSLELEDVSFRYPGagRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDlrRRI 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 86 NTVFQSYALFpHMTVFENvafgLRMQKvPN-SEIEprVMDALKMVRLEPMAQRKPH-----------QLSGGQQQRIAIA 153
Cdd:COG4987 412 AVVPQRPHLF-DTTLREN----LRLAR-PDaTDEE--LWAALERVGLGDWLAALPDgldtwlgeggrRLSGGERRRLALA 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 154 RAVVNKPKVLLLDESLSALDYKLRKQMqieLKQLQRQL-GITFIFVTHDqEEALSMSDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:COG4987 484 RALLRDAPILLLDEPTEGLDAATEQAL---LADLLEALaGRTVLLITHR-LAGLERMDRILVLEDGRIVEQGTHEELLAQ 559
|
.
gi 1140790956 233 P 233
Cdd:COG4987 560 N 560
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
29-230 |
6.22e-46 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 158.36 E-value: 6.22e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 29 NLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQI-----LLAEQNVTQVpaeQRHVNTVFQSY-ALFPHMTVFE 102
Cdd:PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIiidgdLLTEENVWDI---RHKIGMVFQNPdNQFVGATVED 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 103 NVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQI 182
Cdd:PRK13650 102 DVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIK 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1140790956 183 ELKQLQRQLGITFIFVTHDQEEaLSMSDRIIVMRDGVIEQDGTPREIY 230
Cdd:PRK13650 182 TIKGIRDDYQMTVISITHDLDE-VALSDRVLVMKNGQVESTSTPRELF 228
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
22-228 |
1.89e-45 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 163.80 E-value: 1.89e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNTVFQSYALFpHMT 99
Cdd:COG1132 351 GDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESlrRQIGVVPQDTFLF-SGT 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 100 VFENVAFGlrmqkvpNSEI-EPRVMDALKMVRLEPMAQRKPH-----------QLSGGQQQRIAIARAVVNKPKVLLLDE 167
Cdd:COG1132 430 IRENIRYG-------RPDAtDEEVEEAAKAAQAHEFIEALPDgydtvvgergvNLSGGQRQRIAIARALLKDPPILILDE 502
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1140790956 168 SLSALDYKLRKQMQIELKQLQRqlGITFIFVTHDqeeaLS---MSDRIIVMRDGVIEQDGTPRE 228
Cdd:COG1132 503 ATSALDTETEALIQEALERLMK--GRTTIVIAHR----LStirNADRILVLDDGRIVEQGTHEE 560
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-235 |
3.54e-45 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 155.58 E-value: 3.54e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 1 MNAKKSVGKPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLR-------MIAGFETadSGQILLAEQ 73
Cdd:COG1117 1 MTAPASTLEPKIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRclnrmndLIPGARV--EGEILLDGE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 74 NV----TQVPAEQRHVNTVFQSYALFPhMTVFENVAFGLRMQKVPN-SEIEPRVMDALKMV--------RLepmaQRKPH 140
Cdd:COG1117 79 DIydpdVDVVELRRRVGMVFQKPNPFP-KSIYDNVAYGLRLHGIKSkSELDEIVEESLRKAalwdevkdRL----KKSAL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 141 QLSGGQQQRIAIARAVVNKPKVLLLDESLSALD-----------YKLRKQMQIelkqlqrqlgitfIFVTHDQEEALSMS 209
Cdd:COG1117 154 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDpistakieeliLELKKDYTI-------------VIVTHNMQQAARVS 220
|
250 260
....*....|....*....|....*..
gi 1140790956 210 DRIIVMRDG-VIEQDGTpREIYEEPKN 235
Cdd:COG1117 221 DYTAFFYLGeLVEFGPT-EQIFTNPKD 246
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
13-218 |
4.81e-45 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 152.01 E-value: 4.81e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 13 QLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNTVFQ 90
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEElrRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 91 syalfphmtvfenvafglrmqkvpnseieprvmdalkmvrlepmaqrkphqLSGGQQQRIAIARAVVNKPKVLLLDESLS 170
Cdd:cd00267 81 ---------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTS 109
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1140790956 171 ALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDG 218
Cdd:cd00267 110 GLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDG 156
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
12-218 |
4.82e-45 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 152.54 E-value: 4.82e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDG--KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE--QRHVNT 87
Cdd:cd03228 1 IEFKNVSFSYPGrpKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLEslRKNIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 88 VFQSYALFpHMTVFENVafglrmqkvpnseieprvmdalkmvrlepmaqrkphqLSGGQQQRIAIARAVVNKPKVLLLDE 167
Cdd:cd03228 81 VPQDPFLF-SGTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILILDE 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 168 SLSALDYKLRKQMQIELKQLQRqlGITFIFVTHDqEEALSMSDRIIVMRDG 218
Cdd:cd03228 123 ATSALDPETEALILEALRALAK--GKTVIVIAHR-LSTIRDADRIIVLDDG 170
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
13-220 |
1.17e-44 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 153.07 E-value: 1.17e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 13 QLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQvpaEQRHVNTVFQSY 92
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK---ERKRIGYVPQRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 93 AL---FPhMTVFENVAFGL----RMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLL 165
Cdd:cd03235 78 SIdrdFP-ISVRDVVLMGLyghkGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1140790956 166 DESLSALDYKLRKQMQIELKQLqRQLGITFIFVTHDQEEALSMSDRIIVMRDGVI 220
Cdd:cd03235 157 DEPFAGVDPKTQEDIYELLREL-RREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
10-253 |
2.68e-43 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 151.14 E-value: 2.68e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGK---------EVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPA 80
Cdd:COG4167 3 ALLEVRNLSKTFKYRtglfrrqqfEAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEILINGHKLEYGDY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 81 EQR--HVNTVFQ--SYALFPHMTVFENVAFGLRMQ-KVPNSEIEPRVMDALKMVRLEP-MAQRKPHQLSGGQQQRIAIAR 154
Cdd:COG4167 83 KYRckHIRMIFQdpNTSLNPRLNIGQILEEPLRLNtDLTAEEREERIFATLRLVGLLPeHANFYPHMLSSGQKQRVALAR 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 155 AVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDG-VIEQDGTpREIYEEP 233
Cdd:COG4167 163 ALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGeVVEYGKT-AEVFANP 241
|
250 260
....*....|....*....|....
gi 1140790956 234 KNLFVARFI----GEINVFEATAK 253
Cdd:COG4167 242 QHEVTKRLIeshfGEALTADAWRR 265
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
24-222 |
4.79e-43 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 150.34 E-value: 4.79e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ-----RHVNTVFQ-SYALF-P 96
Cdd:TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQrrafrRDVQLVFQdSPSAVnP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 97 HMTVFENVAFGLR-MQKVPNSEIEPRVMDALKMVRLEP-MAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDY 174
Cdd:TIGR02769 104 RMTVRQIIGEPLRhLTSLDESEQKARIAELLDMVGLRSeDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1140790956 175 KLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDG-VIEQ 222
Cdd:TIGR02769 184 VLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGqIVEE 232
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
12-229 |
8.10e-43 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 148.29 E-value: 8.10e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE-QRHVNTVFQ 90
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREvRRRIGIVFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 91 SYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLS 170
Cdd:cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 171 ALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:cd03265 161 GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
8-232 |
9.19e-43 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 156.46 E-value: 9.19e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 8 GKPVVQLTGISKSF-DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE--QRH 84
Cdd:COG4988 333 GPPSIELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPAswRRQ 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 85 VNTVFQSYALFpHMTVFENVAFGLrmqkvPNSEIEpRVMDALKMVRLEPMAQRKPH-----------QLSGGQQQRIAIA 153
Cdd:COG4988 413 IAWVPQNPYLF-AGTIRENLRLGR-----PDASDE-ELEAALEAAGLDEFVAALPDgldtplgeggrGLSGGQAQRLALA 485
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 154 RAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRqlGITFIFVTHDQEEALSMsDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:COG4988 486 RALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAK--GRTVILITHRLALLAQA-DRILVLDDGRIVEQGTHEELLAK 561
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
12-229 |
9.84e-43 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 148.04 E-value: 9.84e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKE--VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNV-TQVPAEQRHVNTV 88
Cdd:cd03263 1 LQIRNLTKTYKKGTkpAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIrTDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 89 FQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDES 168
Cdd:cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 169 LSALDYKLRKQMQIELKQLQRQLgiTFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:cd03263 161 TSGLDPASRRAIWDLILEVRKGR--SIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
13-228 |
3.71e-42 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 147.95 E-value: 3.71e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 13 QLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQR-HVNTVF-Q 90
Cdd:COG4559 3 EAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELaRRRAVLpQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 91 SYAL-FPhMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARA-------VVNKPKV 162
Cdd:COG4559 83 HSSLaFP-FTVEEVVALGRAPHGSSAAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVlaqlwepVDGGPRW 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 163 LLLDESLSALDykLRKQ---MQIeLKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPRE 228
Cdd:COG4559 162 LFLDEPTSALD--LAHQhavLRL-ARQLARR-GGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEE 226
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
14-234 |
5.73e-42 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 146.53 E-value: 5.73e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 14 LTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRH---VNTVFQ 90
Cdd:cd03218 3 AENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRArlgIGYLPQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 91 SYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLS 170
Cdd:cd03218 83 EASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFA 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1140790956 171 ALDYKLRKQMQIELKQLqRQLGITfIFVT-HDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPK 234
Cdd:cd03218 163 GVDPIAVQDIQKIIKIL-KDRGIG-VLITdHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
24-232 |
5.81e-42 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 148.27 E-value: 5.81e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE----QRHVNTVFQ--SYALFPH 97
Cdd:PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKlsdiRKKVGLVFQypEYQLFEE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 98 mTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRL--EPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYK 175
Cdd:PRK13637 100 -TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLdyEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 176 LRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:PRK13637 179 GRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
37-234 |
1.99e-41 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 147.93 E-value: 1.99e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 37 GEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRH-----VNTVFQS--YALFPHMTVFENVAFGLR 109
Cdd:PRK15079 47 GETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRavrsdIQMIFQDplASLNPRMTIGEIIAEPLR 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 110 M--QKVPNSEIEPRVMDALKMVRLEP-MAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQ 186
Cdd:PRK15079 127 TyhPKLSRQEVKDRVKAMMLKVGLLPnLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQ 206
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1140790956 187 LQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPK 234
Cdd:PRK15079 207 LQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPL 254
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
12-262 |
2.97e-41 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 145.61 E-value: 2.97e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSF-----DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQR--H 84
Cdd:COG1101 2 LELKNLSKTFnpgtvNEKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRakY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 85 VNTVFQSYAL--FPHMTVFENVA--------FGLRMqKVPNSEIEpRVMDALKMVR--LEPMAQRKPHQLSGGQQQRIAI 152
Cdd:COG1101 82 IGRVFQDPMMgtAPSMTIEENLAlayrrgkrRGLRR-GLTKKRRE-LFRELLATLGlgLENRLDTKVGLLSGGQRQALSL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 153 ARAVVNKPKVLLLDESLSALDYKlRKQMQIEL-KQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQD--Gtprei 229
Cdd:COG1101 160 LMATLTKPKLLLLDEHTAALDPK-TAALVLELtEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRIILDvsG----- 233
|
250 260 270
....*....|....*....|....*....|...
gi 1140790956 230 yEEPKNLFVARFIGEinvFEATAKSRQDEKRIV 262
Cdd:COG1101 234 -EEKKKLTVEDLLEL---FEEIRGEELADDRLL 262
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
10-228 |
6.93e-41 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 144.53 E-value: 6.93e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNT 87
Cdd:PRK13548 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAElaRRRAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 88 VFQSYAL-FPhMTVFENVAFGLrmqkVPNSEIEPR----VMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVV----- 157
Cdd:PRK13548 81 LPQHSSLsFP-FTVEEVVAMGR----APHGLSRAEddalVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAqlwep 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1140790956 158 -NKPKVLLLDESLSALDykLRKQ---MQIeLKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPRE 228
Cdd:PRK13548 156 dGPPRWLLLDEPTSALD--LAHQhhvLRL-ARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
12-224 |
7.45e-41 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 143.28 E-value: 7.45e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKE----VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE-QRHVN 86
Cdd:cd03266 2 ITADALTKRFRDVKktvqAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEaRRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 87 TVFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLD 166
Cdd:cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1140790956 167 ESLSALDYkLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDG 224
Cdd:cd03266 162 EPTTGLDV-MATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
12-224 |
7.68e-41 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 143.10 E-value: 7.68e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGeFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE-QRHVNTVFQ 90
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKlRRRIGYLPQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 91 SYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLS 170
Cdd:cd03264 80 EFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1140790956 171 ALDYKLRkqmqIELKQLQRQLG--ITFIFVTHDQEEALSMSDRIIVMRDGVIEQDG 224
Cdd:cd03264 160 GLDPEER----IRFRNLLSELGedRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
24-225 |
1.02e-40 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 144.44 E-value: 1.02e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ-----RHVNTVFQSY--ALFP 96
Cdd:PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQrkafrRDIQMVFQDSisAVNP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 97 HMTVFENVAFGLR-MQKVPNSEIEPRVMDALKMVRLEP-MAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDY 174
Cdd:PRK10419 105 RKTVREIIREPLRhLLSLDKAERLARASEMLRAVDLDDsVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 175 KLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGT 225
Cdd:PRK10419 185 VLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
13-229 |
2.09e-40 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 142.19 E-value: 2.09e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 13 QLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQR---HVNTVF 89
Cdd:cd03224 2 EVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERaraGIGYVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 90 QSYALFPHMTVFENvafgLRM--QKVPNSEIEPRVMDALKMV-RLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLD 166
Cdd:cd03224 82 EGRRIFPELTVEEN----LLLgaYARRRAKRKARLERVYELFpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLD 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 167 ESLSALDYKLRKQMQIELKQLqRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:cd03224 158 EPSEGLAPKIVEEIFEAIREL-RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
12-220 |
3.29e-40 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 141.20 E-value: 3.29e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVFQS 91
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 92 YALFPHMTVFENVAFGLRMQKVPNSEIEprvmDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSA 171
Cdd:cd03268 81 PGFYPNLTARENLRLLARLLGIRKKRID----EVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1140790956 172 LDYKLRKQMQiELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVI 220
Cdd:cd03268 157 LDPDGIKELR-ELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
13-234 |
1.88e-39 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 140.16 E-value: 1.88e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 13 QLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVfqSY 92
Cdd:COG1137 5 EAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARLGI--GY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 93 -----ALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDE 167
Cdd:COG1137 83 lpqeaSIFRKLTVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFILLDE 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 168 SLSALDYKLRKQMQIELKQL-QRQLGitfIFVT-HDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPK 234
Cdd:COG1137 163 PFAGVDPIAVADIQKIIRHLkERGIG---VLITdHNVRETLGICDRAYIISEGKVLAEGTPEEILNNPL 228
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
9-225 |
5.54e-39 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 138.80 E-value: 5.54e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 9 KPVVQLTGISKSF-DGK---EVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPA---- 80
Cdd:PRK11629 3 KILLQCDNLCKRYqEGSvqtDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSaaka 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 81 --EQRHVNTVFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVN 158
Cdd:PRK11629 83 elRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 159 KPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSdRIIVMRDGVIEQDGT 225
Cdd:PRK11629 163 NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMS-RQLEMRDGRLTAELS 228
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
12-224 |
5.74e-39 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 138.49 E-value: 5.74e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKE--VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQV-PAE-QRHVNT 87
Cdd:cd03245 3 IEFRNVSFSYPNQEipALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLdPADlRRNIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 88 VFQSYALFpHMTVFENVAFGLrmqkvPNSEIEpRVMDALKMVRLEPMAQRKPH-----------QLSGGQQQRIAIARAV 156
Cdd:cd03245 83 VPQDVTLF-YGTLRDNITLGA-----PLADDE-RILRAAELAGVTDFVNKHPNgldlqigergrGLSGGQRQAVALARAL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1140790956 157 VNKPKVLLLDESLSALDYKLRKQMQIELKQLQRqlGITFIFVTHDQeEALSMSDRIIVMRDGVIEQDG 224
Cdd:cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRP-SLLDLVDRIIVMDSGRIVADG 220
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
9-294 |
8.09e-39 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 144.39 E-value: 8.09e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 9 KPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQ---VPAEQRHV 85
Cdd:COG1129 2 EPLLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFrspRDAQAAGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 86 NTVFQSYALFPHMTVFENVAFG---LRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKV 162
Cdd:COG1129 82 AIIHQELNLVPNLSVAENIFLGrepRRGGLIDWRAMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 163 LLLDESLSALDyklrkQMQIE-----LKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGvieqdgtpreiyeepknlf 237
Cdd:COG1129 162 LILDEPTASLT-----EREVErlfriIRRLKAQ-GVAIIYISHRLDEVFEIADRVTVLRDG------------------- 216
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1140790956 238 vaRFIGEINVfeatakSRQDEKRIVATIEGEE-SIIYHDKDVTPGqklQVLLRPEDLR 294
Cdd:COG1129 217 --RLVGTGPV------AELTEDELVRLMVGRElEDLFPKRAAAPG---EVVLEVEGLS 263
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
10-229 |
1.34e-38 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 138.29 E-value: 1.34e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQ--ILLAEQ----NVTQVPAEQR 83
Cdd:COG1119 2 PLLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNdvRLFGERrggeDVWELRKRIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 HVNTVFQSYaLFPHMTVFENVAFGL-----RMQKVPNSEIEpRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVN 158
Cdd:COG1119 82 LVSPALQLR-FPRDETVLDVVLSGFfdsigLYREPTDEQRE-RARELLELLGLAHLADRPFGTLSQGEQRRVLIARALVK 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 159 KPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:COG1119 160 DPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPKEEV 230
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
22-236 |
3.81e-38 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 137.90 E-value: 3.81e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNV----TQVPAEQRHVNTVFQSY--ALF 95
Cdd:PRK13639 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIkydkKSLLEVRKTVGIVFQNPddQLF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 96 PHmTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYK 175
Cdd:PRK13639 93 AP-TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPM 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 176 LRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNL 236
Cdd:PRK13639 172 GASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETI 231
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
12-220 |
6.33e-38 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 133.71 E-value: 6.33e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTqvpaeqrhvntvfqs 91
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 92 yalfphmtvFENVAfglrmqkvpnseieprvmDALK----MVrlepmaqrkpHQLSGGQQQRIAIARAVVNKPKVLLLDE 167
Cdd:cd03216 66 ---------FASPR------------------DARRagiaMV----------YQLSVGERQMVEIARALARNARLLILDE 108
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 168 SLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVI 220
Cdd:cd03216 109 PTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
11-233 |
1.01e-37 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 136.43 E-value: 1.01e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNV-----TQVPAEQRHV 85
Cdd:PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIpamsrSRLYTVRKRM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 86 NTVFQSYALFPHMTVFENVAFGLRMQ-KVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLL 164
Cdd:PRK11831 87 SMLFQSGALFTDMNVFDNVAYPLREHtQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIM 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 165 LDESLSALDyklRKQMQIELK---QLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEP 233
Cdd:PRK11831 167 FDEPFVGQD---PITMGVLVKlisELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
10-236 |
1.05e-37 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 136.42 E-value: 1.05e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKE--VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE--QRHV 85
Cdd:PRK13648 6 SIIVFKNVSFQYQSDAsfTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEklRKHI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 86 NTVFQS-YALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLL 164
Cdd:PRK13648 86 GIVFQNpDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVII 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 165 LDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSmSDRIIVMRDGVIEQDGTPREIYEEPKNL 236
Cdd:PRK13648 166 LDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDHAEEL 236
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
9-245 |
1.60e-37 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 135.89 E-value: 1.60e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 9 KPVVQLTGISKSFDGKE--VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQI-----LLAEQNVTQVpae 81
Cdd:PRK13632 5 SVMIKVENVSFSYPNSEnnALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIkidgiTISKENLKEI--- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 82 QRHVNTVFQSY-ALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKP 160
Cdd:PRK13632 82 RKKIGIIFQNPdNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 161 KVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALsMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVAR 240
Cdd:PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILNNKEILEKAK 240
|
....*....
gi 1140790956 241 ----FIGEI 245
Cdd:PRK13632 241 idspFIYKL 249
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
9-234 |
1.72e-37 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 141.36 E-value: 1.72e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 9 KPVVQLTGISKSFDG----KEVIGNLDLNVNHGEFLTILGPSGCGKT----TVLRMIAGFETADSGQILLAEQNVTQVPA 80
Cdd:COG4172 4 MPLLSVEDLSVAFGQgggtVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLGLSE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 81 EQ------RHVNTVFQ--SYALFPHMTVFENVAFGLRM-QKVPNSEIEPRVMDALKMVRLePMAQRK----PHQLSGGQQ 147
Cdd:COG4172 84 RElrrirgNRIAMIFQepMTSLNPLHTIGKQIAEVLRLhRGLSGAAARARALELLERVGI-PDPERRldayPHQLSGGQR 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 148 QRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDqeeaLS----MSDRIIVMRDGVIEQD 223
Cdd:COG4172 163 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHD----LGvvrrFADRVAVMRQGEIVEQ 238
|
250
....*....|.
gi 1140790956 224 GTPREIYEEPK 234
Cdd:COG4172 239 GPTAELFAAPQ 249
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
10-234 |
1.79e-37 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 134.72 E-value: 1.79e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQR------ 83
Cdd:COG0410 2 PMLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIarlgig 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 HVNtvfQSYALFPHMTVFENVAFGLRMQKvPNSEIEPRVMDALKMV-RLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKV 162
Cdd:COG0410 82 YVP---EGRRIFPSLTVEENLLLGAYARR-DRAEVRADLERVYELFpRLKERRRQRAGTLSGGEQQMLAIGRALMSRPKL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 163 LLLDESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPK 234
Cdd:COG0410 158 LLLDEPSLGLAPLIVEEIFEIIRRLNRE-GVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPE 228
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
9-233 |
1.83e-37 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 135.50 E-value: 1.83e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 9 KPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RH-- 84
Cdd:PRK11300 3 QPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQiaRMgv 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 85 VNTvFQSYALFPHMTVFEN--VAFGLRMQ--------KVP---NSEIEP--RVMDALKMVRLEPMAQRKPHQLSGGQQQR 149
Cdd:PRK11300 83 VRT-FQHVRLFREMTVIENllVAQHQQLKtglfsgllKTPafrRAESEAldRAATWLERVGLLEHANRQAGNLAYGQQRR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 150 IAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:PRK11300 162 LEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241
|
....
gi 1140790956 230 YEEP 233
Cdd:PRK11300 242 RNNP 245
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
24-232 |
2.68e-36 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 132.90 E-value: 2.68e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLA------EQNVTQVpaeQRHVNTVFQSyalfPH 97
Cdd:PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDgldtsdEENLWDI---RNKAGMVFQN----PD 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 98 -----MTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSAL 172
Cdd:PRK13633 96 nqivaTIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAML 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 173 DYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSmSDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:PRK13633 176 DPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
25-232 |
3.00e-36 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 131.89 E-value: 3.00e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 25 EVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNTVFQSYALFPhMTVFE 102
Cdd:cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWlrSQIGLVSQEPVLFD-GTIAE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 103 NVAFGLrmqkvpNSEIEPRVMDALKMVRLEPMAQRKPH-----------QLSGGQQQRIAIARAVVNKPKVLLLDESLSA 171
Cdd:cd03249 96 NIRYGK------PDATDEEVEEAAKKANIHDFIMSLPDgydtlvgergsQLSGGQKQRIAIARALLRNPKILLLDEATSA 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1140790956 172 LDYKLRKQMQIELKQLQRqlGITFIFVTHdqeeALSM---SDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:cd03249 170 LDAESEKLVQEALDRAMK--GRTTIVIAH----RLSTirnADLIAVLQNGQVVEQGTHDELMAQ 227
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
10-231 |
4.03e-36 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 133.39 E-value: 4.03e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNV-TQVPAEQRHVNTV 88
Cdd:PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVpSRARHARQRVGVV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 89 FQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDES 168
Cdd:PRK13537 86 PQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEP 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 169 LSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYE 231
Cdd:PRK13537 166 TTGLDPQARHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
24-233 |
4.72e-36 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 134.23 E-value: 4.72e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNH---GEFLT-ILGPSGCGKTTVLRMIAGFETADSGQILL-------AEQNVtQVPAEQRHVNTVFQSY 92
Cdd:PRK11144 7 KQQLGDLCLTVNLtlpAQGITaIFGRSGAGKTSLINAISGLTRPQKGRIVLngrvlfdAEKGI-CLPPEKRRIGYVFQDA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 93 ALFPHMTVFENVAFGLRmqkvpnseiepRVMDAL--KMVRL---EPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDE 167
Cdd:PRK11144 86 RLFPHYKVRGNLRYGMA-----------KSMVAQfdKIVALlgiEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDE 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1140790956 168 SLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEP 233
Cdd:PRK11144 155 PLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
12-232 |
5.43e-36 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 133.80 E-value: 5.43e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQI-LLAEQNVTQVPAEQRHVNTVFQ 90
Cdd:PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKItVLGVPVPARARLARARIGVVPQ 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 91 SYALFPHMTVFEN-VAFGlRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESL 169
Cdd:PRK13536 122 FDNLDLEFTVRENlLVFG-RYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT 200
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 170 SALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:PRK13536 201 TGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
12-242 |
2.61e-35 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 129.70 E-value: 2.61e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT--------------- 76
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvrdkdgqlkvadkn 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 77 QVPAEQRHVNTVFQSYALFPHMTVFENVAFG-LRMQKVPNSEIEPRVMDALKMVRLEPMAQRK-PHQLSGGQQQRIAIAR 154
Cdd:PRK10619 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEApIQVLGLSKQEARERAVKYLAKVGIDERAQGKyPVHLSGGQQQRVSIAR 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 155 AVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPK 234
Cdd:PRK10619 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQ 244
|
....*...
gi 1140790956 235 NLFVARFI 242
Cdd:PRK10619 245 SPRLQQFL 252
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
22-231 |
6.60e-35 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 128.12 E-value: 6.60e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNTVFQSYALFpHMT 99
Cdd:cd03251 13 DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASlrRQIGLVSQDVFLF-NDT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 100 VFENVAFGLRmqkvpnSEIEPRVMDALKMVRLEPMAQRKPH-----------QLSGGQQQRIAIARAVVNKPKVLLLDES 168
Cdd:cd03251 92 VAENIAYGRP------GATREEVEEAARAANAHEFIMELPEgydtvigergvKLSGGQRQRIAIARALLKDPPILILDEA 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1140790956 169 LSALDYKLRKQMQIELKQLQRqlGITFIFVTHdqeeALSM---SDRIIVMRDGVIEQDGTPREIYE 231
Cdd:cd03251 166 TSALDTESERLVQAALERLMK--NRTTFVIAH----RLSTienADRIVVLEDGKIVERGTHEELLA 225
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
11-270 |
6.72e-35 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 129.84 E-value: 6.72e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPA-------EQR 83
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDRrrigylpEER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 hvntvfqsyALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVL 163
Cdd:COG4152 81 ---------GLYPKMKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 164 LLDESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEE-PKNLFVARF- 241
Cdd:COG4152 152 ILDEPFSGLDPVNVELLKDVIRELAAK-GTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQfGRNTLRLEAd 230
|
250 260 270
....*....|....*....|....*....|.
gi 1140790956 242 --IGEINVFEATAKSRQDEKRIVATIEGEES 270
Cdd:COG4152 231 gdAGWLRALPGVTVVEEDGDGAELKLEDGAD 261
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
20-228 |
1.13e-34 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 127.34 E-value: 1.13e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 20 SFDGKE-VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNTVFQSYALFP 96
Cdd:cd03254 11 SYDEKKpVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSlrSMIGVVLQDTFLFS 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 97 HmTVFENVAFGlrmqkVPNSEIEpRVMDALKMVRLEPMAQRKP-----------HQLSGGQQQRIAIARAVVNKPKVLLL 165
Cdd:cd03254 91 G-TIMENIRLG-----RPNATDE-EVIEAAKEAGAHDFIMKLPngydtvlgengGNLSQGERQLLAIARAMLRDPKILIL 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1140790956 166 DESLSALDYKLRKQMQIELKQLQRqlGITFIFVTHdqeeALSM---SDRIIVMRDGVIEQDGTPRE 228
Cdd:cd03254 164 DEATSNIDTETEKLIQEALEKLMK--GRTSIIIAH----RLSTiknADKILVLDDGKIIEEGTHDE 223
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
11-218 |
1.66e-34 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 126.53 E-value: 1.66e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSF-DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT-----QVPAEQRH 84
Cdd:PRK10908 1 MIRFEHVSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITrlknrEVPFLRRQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 85 VNTVFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLL 164
Cdd:PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1140790956 165 LDESLSALDYKLRKQMQIELKQLQRqLGITFIFVTHDQEEALSMSDRIIVMRDG 218
Cdd:PRK10908 161 ADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDG 213
|
|
| NHLM_micro_ABC2 |
TIGR03797 |
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family ... |
22-233 |
2.15e-34 |
|
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274789 [Multi-domain] Cd Length: 686 Bit Score: 133.93 E-value: 2.15e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT--QVPAEQRHVNTVFQSYALFPHmT 99
Cdd:TIGR03797 464 DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAglDVQAVRRQLGVVLQNGRLMSG-S 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 100 VFENVAFGLRMQkvpnseIEpRVMDALKMVRLEPMAQRKP---H--------QLSGGQQQRIAIARAVVNKPKVLLLDES 168
Cdd:TIGR03797 543 IFENIAGGAPLT------LD-EAWEAARMAGLAEDIRAMPmgmHtvisegggTLSGGQRQRLLIARALVRKPRILLFDEA 615
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1140790956 169 LSALDYKlrkqMQIELKQLQRQLGITFIFVTHdqeeALSM---SDRIIVMRDGVIEQDGTPREIYEEP 233
Cdd:TIGR03797 616 TSALDNR----TQAIVSESLERLKVTRIVIAH----RLSTirnADRIYVLDAGRVVQQGTYDELMARE 675
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
31-236 |
2.75e-34 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 127.83 E-value: 2.75e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 31 DLNVN--HGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT------QVPAEQRHVNTVFQsyalFPHMTVFE 102
Cdd:PRK13634 25 DVNVSipSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITagkknkKLKPLRKKVGIVFQ----FPEHQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 103 -----NVAFGLRMQKVPNSEIEPRVMDALKMVRL-EPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKL 176
Cdd:PRK13634 101 etvekDICFGPMNFGVSEEDAKQKAREMIELVGLpEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 177 RKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNL 236
Cdd:PRK13634 181 RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPDEL 240
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
26-229 |
9.36e-34 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 131.41 E-value: 9.36e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 26 VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNTVFQSYALFPHmTVFEN 103
Cdd:COG4618 347 ILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREElgRHIGYLPQDVELFDG-TIAEN 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 104 VAfglRMQKvPNSEiepRVMDALKMVRLEPMAQRKP-----------HQLSGGQQQRIAIARAVVNKPKVLLLDESLSAL 172
Cdd:COG4618 426 IA---RFGD-ADPE---KVVAAAKLAGVHEMILRLPdgydtrigeggARLSGGQRQRIGLARALYGDPRLVVLDEPNSNL 498
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 173 DYKLRKQMQIELKQLqRQLGITFIFVTHDQeEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:COG4618 499 DDEGEAALAAAIRAL-KARGATVVVITHRP-SLLAAVDKLLVLRDGRVQAFGPRDEV 553
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
9-215 |
1.16e-33 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 124.44 E-value: 1.16e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 9 KPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVN 86
Cdd:PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIyrQQVS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 87 TVFQSYALFPHmTVFENVAF--GLRMQKVPnseiEPRVMDALKMVRL-EPMAQRKPHQLSGGQQQRIAIARAVVNKPKVL 163
Cdd:PRK10247 85 YCAQTPTLFGD-TVYDNLIFpwQIRNQQPD----PAIFLDDLERFALpDTILTKNIAELSGGEKQRISLIRNLQFMPKVL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 164 LLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEaLSMSDRIIVM 215
Cdd:PRK10247 160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-INHADKVITL 210
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
12-220 |
2.03e-33 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 123.54 E-value: 2.03e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTqvPAEQRHVNTVFQS 91
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD--IAARNRIGYLPEE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 92 YALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSA 171
Cdd:cd03269 79 RGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSG 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1140790956 172 LDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVI 220
Cdd:cd03269 159 LDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRA 206
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
24-236 |
2.46e-33 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 125.30 E-value: 2.46e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQ--------ILLAEQNVTQVpaeQRHVNTVFQSY-AL 94
Cdd:PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPnskitvdgITLTAKTVWDI---REKVGIVFQNPdNQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 95 FPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDY 174
Cdd:PRK13640 97 FVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDP 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 175 KLRKQMQIELKQLQRQLGITFIFVTHDQEEAlSMSDRIIVMRDGVIEQDGTPREIYEEPKNL 236
Cdd:PRK13640 177 AGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSKVEML 237
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
11-232 |
2.51e-33 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 124.74 E-value: 2.51e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADS---------GQILLAEQNVTQVPAE 81
Cdd:PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKsagshiellGRTVQREGRLARDIRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 82 QR-HVNTVFQSYALFPHMTVFENVAFGlRMQKVP---------NSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIA 151
Cdd:PRK09984 84 SRaNTGYIFQQFNLVNRLSVLENVLIG-ALGSTPfwrtcfswfTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 152 IARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYE 231
Cdd:PRK09984 163 IARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDN 242
|
.
gi 1140790956 232 E 232
Cdd:PRK09984 243 E 243
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
22-232 |
3.03e-33 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 124.96 E-value: 3.03e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQ----VPAEQRHVNTVFQS--YALF 95
Cdd:PRK13636 17 DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYsrkgLMKLRESVGMVFQDpdNQLF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 96 PhMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYK 175
Cdd:PRK13636 97 S-ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPM 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 176 LRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:PRK13636 176 GVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
37-234 |
3.50e-33 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 125.85 E-value: 3.50e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 37 GEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRH-----VNTVFQS-YA-LFPHMTVFENVAFGLR 109
Cdd:PRK11308 41 GKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKllrqkIQIVFQNpYGsLNPRKKVGQILEEPLL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 110 MQ-KVPNSEIEPRVMDALKMVRLEP-MAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQL 187
Cdd:PRK11308 121 INtSLSAAERREKALAMMAKVGLRPeHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDL 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 188 QRQLGITFIFVTHDqeeaLS----MSDRIIVMRDG-VIEQdGTPREIYEEPK 234
Cdd:PRK11308 201 QQELGLSYVFISHD----LSvvehIADEVMVMYLGrCVEK-GTKEQIFNNPR 247
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
22-218 |
3.88e-33 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 129.54 E-value: 3.88e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLaeqnvtqvPAEQRhvnTVF---QSYalFPHM 98
Cdd:COG4178 374 DGRPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIAR--------PAGAR---VLFlpqRPY--LPLG 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 99 TVFENVAFGLRMQKVPNSEIEprvmDALKMVRLEPMAQR------KPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSAL 172
Cdd:COG4178 441 TLREALLYPATAEAFSDAELR----EALEAVGLGHLAERldeeadWDQVLSLGEQQRLAFARLLLHKPDWLFLDEATSAL 516
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1140790956 173 DYKLRKQMqieLKQLQRQL-GITFIFVTHdQEEALSMSDRIIVMRDG 218
Cdd:COG4178 517 DEENEAAL---YQLLREELpGTTVISVGH-RSTLAAFHDRVLELTGD 559
|
|
| type_I_sec_HlyB |
TIGR01846 |
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in ... |
22-229 |
7.74e-33 |
|
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273831 [Multi-domain] Cd Length: 694 Bit Score: 129.48 E-value: 7.74e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQV-PAE-QRHVNTVFQSYALFPHmT 99
Cdd:TIGR01846 468 DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIAdPAWlRRQMGVVLQENVLFSR-S 546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 100 VFENVAFGlrmqkVPNSEIEpRVMDALKMVRLEPMAQRKPH-----------QLSGGQQQRIAIARAVVNKPKVLLLDES 168
Cdd:TIGR01846 547 IRDNIALC-----NPGAPFE-HVIHAAKLAGAHDFISELPQgyntevgekgaNLSGGQRQRIAIARALVGNPRILIFDEA 620
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 169 LSALDYKLRKQMQIELKQLQRqlGITFIFVTHdQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:TIGR01846 621 TSALDYESEALIMRNMREICR--GRTVIIIAH-RLSTVRACDRIIVLEKGQIAESGRHEEL 678
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
11-242 |
1.00e-32 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 122.71 E-value: 1.00e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGF-----ETADSGQILLAEQNVTQVPAEQ--R 83
Cdd:PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLielypEARVSGEVYLDGQDIFKMDVIElrR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 HVNTVFQSYALFPHMTVFENVAFGLRMQKVPNS--EIEPRVMDALKMVRL-EPMAQR---KPHQLSGGQQQRIAIARAVV 157
Cdd:PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSkkELQERVRWALEKAQLwDEVKDRldaPAGKLSGGQQQRLCIARALA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 158 NKPKVLLLDESLSALDYKlrKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLF 237
Cdd:PRK14247 163 FQPEVLLADEPTANLDPE--NTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHEL 240
|
....*
gi 1140790956 238 VARFI 242
Cdd:PRK14247 241 TEKYV 245
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
10-228 |
1.01e-32 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 129.07 E-value: 1.01e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKE----VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--- 82
Cdd:PRK10535 3 ALLELKDIRRSYPSGEeqveVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAlaq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 83 ---RHVNTVFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNK 159
Cdd:PRK10535 83 lrrEHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 160 PKVLLLDESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEAlSMSDRIIVMRDGVIEQDGTPRE 228
Cdd:PRK10535 163 GQVILADEPTGALDSHSGEEVMAILHQLRDR-GHTVIIVTHDPQVA-AQAERVIEIRDGEIVRNPPAQE 229
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
16-220 |
1.30e-32 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 121.21 E-value: 1.30e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 16 GISKSF-DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQvPAEQRHVNTVFQS--Y 92
Cdd:cd03226 4 NISFSYkKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA-KERRKSIGYVMQDvdY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 93 ALFPHmTVFENVAFGLRMQKVPNSEIEprvmDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSAL 172
Cdd:cd03226 83 QLFTD-SVREELLLGLKELDAGNEQAE----TVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1140790956 173 DYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVI 220
Cdd:cd03226 158 DYKNMERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
22-227 |
1.46e-32 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 122.92 E-value: 1.46e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE--QRHVNTVFQSY--ALFPh 97
Cdd:PRK13647 16 DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKwvRSKVGLVFQDPddQVFS- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 98 MTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLR 177
Cdd:PRK13647 95 STVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQ 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1140790956 178 KQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPR 227
Cdd:PRK13647 175 ETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS 223
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
13-225 |
1.76e-32 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 121.48 E-value: 1.76e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 13 QLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQR---HVNTVF 89
Cdd:TIGR03410 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERaraGIAYVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 90 QSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMvrLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESL 169
Cdd:TIGR03410 82 QGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV--LKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1140790956 170 SALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGT 225
Cdd:TIGR03410 160 EGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGA 215
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
25-242 |
2.11e-32 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 121.87 E-value: 2.11e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 25 EVIGNLDLNVNHGEFLTILGPSGCGKTTVLR----MIAGFETAD-SGQILLAEQNVTQV---PAE-QRHVNTVFQSYALF 95
Cdd:PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRtfnrLLELNEEARvEGEVRLFGRNIYSPdvdPIEvRREVGMVFQYPNPF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 96 PHMTVFENVAFGLRMQKV--PNSEIEPRVMDALKMVRL-EPMAQR---KPHQLSGGQQQRIAIARAVVNKPKVLLLDESL 169
Cdd:PRK14267 98 PHLTIYDNVAIGVKLNGLvkSKKELDERVEWALKKAALwDEVKDRlndYPSNLSGGQRQRLVIARALAMKPKILLMDEPT 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 170 SALDYKLRKQMQIELKQLQRQLgiTFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFI 242
Cdd:PRK14267 178 ANIDPVGTAKIEELLFELKKEY--TIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTEKYV 248
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
8-218 |
2.51e-32 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 126.68 E-value: 2.51e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 8 GKPVVQLTGISKSFDGkeVIGN--LDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQV-PAE--Q 82
Cdd:COG3845 2 MPPALELRGITKRFGG--VVANddVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRsPRDaiA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 83 RHVNTVFQSYALFPHMTVFENVAFGL---RMQKVPNSEIEPRV---MDALKMvRLEPmaQRKPHQLSGGQQQRIAIARAV 156
Cdd:COG3845 80 LGIGMVHQHFMLVPNLTVAENIVLGLeptKGGRLDRKAARARIrelSERYGL-DVDP--DAKVEDLSVGEQQRVEILKAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 157 VNKPKVLLLDESLSAL-----DyKLrkqMQIeLKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDG 218
Cdd:COG3845 157 YRGARILILDEPTAVLtpqeaD-EL---FEI-LRRLAAE-GKSIIFITHKLREVMAIADRVTVLRRG 217
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
22-228 |
7.13e-32 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 120.03 E-value: 7.13e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQV--PAEQRHVNTVFQSYALFpHMT 99
Cdd:cd03253 12 PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVtlDSLRRAIGVVPQDTVLF-NDT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 100 VFENVAFGlrmqKVPNSEIEprVMDALKMVRLEPMAQRKPHQ-----------LSGGQQQRIAIARAVVNKPKVLLLDES 168
Cdd:cd03253 91 IGYNIRYG----RPDATDEE--VIEAAKAAQIHDKIMRFPDGydtivgerglkLSGGEKQRVAIARAILKNPPILLLDEA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 169 LSALDYKLRKQMQIELKQLQRqlGITFIFVTHDQEEALSmSDRIIVMRDGVIEQDGTPRE 228
Cdd:cd03253 165 TSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEE 221
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
8-256 |
7.56e-32 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 126.51 E-value: 7.56e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 8 GKPVVQLTGISKSFD---------GKEV--IGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT 76
Cdd:PRK10261 310 GEPILQVRNLVTRFPlrsgllnrvTREVhaVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 77 QVPAEQ-----RHVNTVFQS-YA-LFPHMTVFENVAFGLRMQKV-PNSEIEPRVMDALKMVRLEP-MAQRKPHQLSGGQQ 147
Cdd:PRK10261 390 TLSPGKlqalrRDIQFIFQDpYAsLDPRQTVGDSIMEPLRVHGLlPGKAAAARVAWLLERVGLLPeHAWRYPHEFSGGQR 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 148 QRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPR 227
Cdd:PRK10261 470 QRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRR 549
|
250 260
....*....|....*....|....*....
gi 1140790956 228 EIYEEPKNLFVARFIGEINVFEATAKSRQ 256
Cdd:PRK10261 550 AVFENPQHPYTRKLMAAVPVADPSRQRPQ 578
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
11-233 |
7.96e-32 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 120.86 E-value: 7.96e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSF-DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNV---TQVPAEQRHVN 86
Cdd:PRK13644 1 MIRLENVSYSYpDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTgdfSKLQGIRKLVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 87 TVFQS-YALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLL 165
Cdd:PRK13644 81 IVFQNpETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIF 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1140790956 166 DESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEaLSMSDRIIVMRDGVIEQDGTPREIYEEP 233
Cdd:PRK13644 161 DEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEE-LHDADRIIVMDRGKIVLEGEPENVLSDV 226
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
22-229 |
8.05e-32 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 125.98 E-value: 8.05e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE--QRHVNTVFQSYALFPHmT 99
Cdd:TIGR02203 343 RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLAslRRQVALVSQDVVLFND-T 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 100 VFENVAFGlRMQKVPNSEIEprvmDALKMVRLEPMAQRKP---HQ--------LSGGQQQRIAIARAVVNKPKVLLLDES 168
Cdd:TIGR02203 422 IANNIAYG-RTEQADRAEIE----RALAAAYAQDFVDKLPlglDTpigengvlLSGGQRQRLAIARALLKDAPILILDEA 496
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 169 LSALDYKLRKQMQIELKQLQRqlGITFIFVTHdQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:TIGR02203 497 TSALDNESERLVQAALERLMQ--GRTTLVIAH-RLSTIEKADRIVVMDDGRIVERGTHNEL 554
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
11-234 |
8.35e-32 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 120.07 E-value: 8.35e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRH---VNT 87
Cdd:TIGR04406 1 TLVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERArlgIGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 88 VFQSYALFPHMTVFENVAFGL-RMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLD 166
Cdd:TIGR04406 81 LPQEASIFRKLTVEENIMAVLeIRKDLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILLD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1140790956 167 ESLSALDYKLRKQMQIELKQLqRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPK 234
Cdd:TIGR04406 161 EPFAGVDPIAVGDIKKIIKHL-KERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVANEK 227
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
22-237 |
1.24e-31 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 125.20 E-value: 1.24e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTT----VLRMIAGfetadSGQILLAEQNVTQVPAEQ-----RHVNTVFQ-- 90
Cdd:PRK15134 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLINS-----QGEIWFDGQPLHNLNRRQllpvrHRIQVVFQdp 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 91 SYALFPHMTVFENVAFGLRM-QKVPNS-EIEPRVMDALKMVRLEPMA-QRKPHQLSGGQQQRIAIARAVVNKPKVLLLDE 167
Cdd:PRK15134 372 NSSLNPRLNVLQIIEEGLRVhQPTLSAaQREQQVIAVMEEVGLDPETrHRYPAEFSGGQRQRIAIARALILKPSLIILDE 451
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 168 SLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDG-VIEQdGTPREIYEEPKNLF 237
Cdd:PRK15134 452 PTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGeVVEQ-GDCERVFAAPQQEY 521
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
9-235 |
2.90e-31 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 118.72 E-value: 2.90e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 9 KPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGF-----ETADSGQILLAEQNV----TQVP 79
Cdd:PRK14239 3 EPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndlnpEVTITGSIVYNGHNIysprTDTV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 80 AEQRHVNTVFQSYALFPhMTVFENVAFGLRMQKVPNSEI-EPRVMDALKMVRLEPMAQRKPHQ----LSGGQQQRIAIAR 154
Cdd:PRK14239 83 DLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVlDEAVEKSLKGASIWDEVKDRLHDsalgLSGGQQQRVCIAR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 155 AVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLgiTFIFVTHDQEEALSMSDRIIVMRDG-VIEQDGTpREIYEEP 233
Cdd:PRK14239 162 VLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDY--TMLLVTRSMQQASRISDRTGFFLDGdLIEYNDT-KQMFMNP 238
|
..
gi 1140790956 234 KN 235
Cdd:PRK14239 239 KH 240
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
4-218 |
5.91e-31 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 117.57 E-value: 5.91e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 4 KKSVGKPVVQLTgisksfdgkeVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQR 83
Cdd:PRK10584 13 KKSVGQGEHELS----------ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 ------HVNTVFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVV 157
Cdd:PRK10584 83 aklrakHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFN 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 158 NKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEAlSMSDRIIVMRDG 218
Cdd:PRK10584 163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLA-ARCDRRLRLVNG 222
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
13-220 |
3.34e-30 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 113.85 E-value: 3.34e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 13 QLTGISKSFDGKE--VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNTV 88
Cdd:cd03246 2 EVENVSFRYPGAEppVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNElgDHVGYL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 89 FQSYALFPHmTVFENVafglrmqkvpnseieprvmdalkmvrlepmaqrkphqLSGGQQQRIAIARAVVNKPKVLLLDES 168
Cdd:cd03246 82 PQDDELFSG-SIAENI-------------------------------------LSGGQRQRLGLARALYGNPRILVLDEP 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 169 LSALDYKLRKQMQIELKQLQRQlGITFIFVTHdQEEALSMSDRIIVMRDGVI 220
Cdd:cd03246 124 NSHLDVEGERALNQAIAALKAA-GATRIVIAH-RPETLASADRILVLEDGRV 173
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
27-236 |
4.21e-30 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 116.35 E-value: 4.21e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 27 IGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT--QVPAEQRHVNTVFQSY-ALFPHMTVFEN 103
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTaeNVWNLRRKIGMVFQNPdNQFVGATVEDD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 104 VAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIE 183
Cdd:PRK13642 103 VAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRV 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 184 LKQLQRQLGITFIFVTHDQEEALSmSDRIIVMRDGVIEQDGTPREIYEEPKNL 236
Cdd:PRK13642 183 IHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFATSEDM 234
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
22-229 |
6.21e-30 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 114.89 E-value: 6.21e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE--QRHVNTVFQSYALFpHMT 99
Cdd:cd03252 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAwlRRQVGVVLQENVLF-NRS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 100 VFENVAF---GLRMQKVpnsEIEPRVMDALKMVRLEP-----MAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSA 171
Cdd:cd03252 92 IRDNIALadpGMSMERV---IEAAKLAGAHDFISELPegydtIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSA 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1140790956 172 LDYKLRKQMQIELKQLQRqlGITFIFVTHdQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:cd03252 169 LDYESEHAIMRNMHDICA--GRTVIIIAH-RLSTVKNADRIIVMEKGRIVEQGSHDEL 223
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
10-215 |
1.24e-29 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 119.31 E-value: 1.24e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGK-EVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE--QRHVN 86
Cdd:TIGR02857 320 SSLEFSGVSVAYPGRrPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADswRDQIA 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 87 TVFQSYALFPHmTVFENVAFGLRmqKVPNSEIEPRVMDA--LKMVR-----LEPMAQRKPHQLSGGQQQRIAIARAVVNK 159
Cdd:TIGR02857 400 WVPQHPFLFAG-TIAENIRLARP--DASDAEIREALERAglDEFVAalpqgLDTPIGEGGAGLSGGQAQRLALARAFLRD 476
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1140790956 160 PKVLLLDESLSALDYKLRKQMQIELKQLQRqlGITFIFVTHDQEEALSMsDRIIVM 215
Cdd:TIGR02857 477 APLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALAALA-DRIVVL 529
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
24-240 |
1.48e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 114.90 E-value: 1.48e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQ--VPAEQRHVNTVFQSY--ALFPhMT 99
Cdd:PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKenIREVRKFVGLVFQNPddQIFS-PT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 100 VFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQ 179
Cdd:PRK13652 96 VEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 180 MQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVAR 240
Cdd:PRK13652 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLARVH 236
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
10-233 |
1.55e-29 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 114.75 E-value: 1.55e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADS-----GQILLAEQNVTQ----VPA 80
Cdd:PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQNIYErrvnLNR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 81 EQRHVNTVFQSYALFPhMTVFENVAFGLRMQK-VPNSEIEPRVMDALKMVRLEPMAQRKPHQ----LSGGQQQRIAIARA 155
Cdd:PRK14258 86 LRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGwRPKLEIDDIVESALKDADLWDEIKHKIHKsaldLSGGQQQRLCIARA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 156 VVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVM-----RDGVIEQDGTPREIY 230
Cdd:PRK14258 165 LAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFkgnenRIGQLVEFGLTKKIF 244
|
...
gi 1140790956 231 EEP 233
Cdd:PRK14258 245 NSP 247
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
7-232 |
1.81e-29 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 118.75 E-value: 1.81e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 7 VGKPVVQLTGISKSFDGKE-----VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQ---------ILLAE 72
Cdd:TIGR03269 275 VGEPIIKVRNVSKRYISVDrgvvkAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEvnvrvgdewVDMTK 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 73 QNVTQVPAEQRHVNTVFQSYALFPHMTVFENV--AFGLRMqkvPNSEIEPRVMDALKMV-----RLEPMAQRKPHQLSGG 145
Cdd:TIGR03269 355 PGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLteAIGLEL---PDELARMKAVITLKMVgfdeeKAEEILDKYPDELSEG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 146 QQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGT 225
Cdd:TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511
|
....*..
gi 1140790956 226 PREIYEE 232
Cdd:TIGR03269 512 PEEIVEE 518
|
|
| MsbA_rel |
TIGR02204 |
ABC transporter, permease/ATP-binding protein; This protein is related to a Proteobacterial ... |
26-229 |
2.19e-29 |
|
ABC transporter, permease/ATP-binding protein; This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Pssm-ID: 131259 [Multi-domain] Cd Length: 576 Bit Score: 119.03 E-value: 2.19e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 26 VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQV-PAEQR-HVNTVFQSYALFPHmTVFEN 103
Cdd:TIGR02204 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLdPAELRaRMALVPQDPVLFAA-SVMEN 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 104 VAFGlrmqkVPNSEIEpRVMDALKMVRLEPMAQRKPH-----------QLSGGQQQRIAIARAVVNKPKVLLLDESLSAL 172
Cdd:TIGR02204 434 IRYG-----RPDATDE-EVEAAARAAHAHEFISALPEgydtylgergvTLSGGQRQRIAIARAILKDAPILLLDEATSAL 507
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 173 DYKLRKQMQIELKQLQRqlGITFIFVTHDQEEALSmSDRIIVMRDGVIEQDGTPREI 229
Cdd:TIGR02204 508 DAESEQLVQQALETLMK--GRTTLIIAHRLATVLK-ADRIVVMDQGRIVAQGTHAEL 561
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
17-236 |
2.21e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 115.18 E-value: 2.21e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 17 ISKSFDGK-----EVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQN----------------- 74
Cdd:PRK13651 8 IVKIFNKKlptelKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDeknkkktkekekvlekl 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 75 ---------VTQVPAEQRHVNTVFQ--SYALFpHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRL-EPMAQRKPHQL 142
Cdd:PRK13651 88 viqktrfkkIKKIKEIRRRVGVVFQfaEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLdESYLQRSPFEL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 143 SGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQ 222
Cdd:PRK13651 167 SGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFFKDGKIIK 245
|
250
....*....|....
gi 1140790956 223 DGTPREIYEEPKNL 236
Cdd:PRK13651 246 DGDTYDILSDNKFL 259
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-246 |
5.51e-29 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 112.83 E-value: 5.51e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 1 MNAKKSvGKPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGF-ETADS-----GQILLAEQN 74
Cdd:PRK14246 1 MEAGKS-AEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLiEIYDSkikvdGKVLYFGKD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 75 VTQVPA--EQRHVNTVFQSYALFPHMTVFENVAFGLRMQKVPNS-EIEPRVMDALKMVRLEPMAQRK----PHQLSGGQQ 147
Cdd:PRK14246 80 IFQIDAikLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKrEIKKIVEECLRKVGLWKEVYDRlnspASQLSGGQQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 148 QRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQlgITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPR 227
Cdd:PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSN 237
|
250 260
....*....|....*....|
gi 1140790956 228 EIYEEPKNLFVARF-IGEIN 246
Cdd:PRK14246 238 EIFTSPKNELTEKYvIGRIS 257
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-220 |
1.51e-28 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 116.30 E-value: 1.51e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 1 MNAKKSVGKPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQ---NVTQ 77
Cdd:PRK15439 1 MQTSDTTAPPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNpcaRLTP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 78 VPAEQRHVNTVFQSYALFPHMTVFENVAFGLrmqkvPNSEIEPRVMDALkmvrLEPM-AQRKPHQLSG----GQQQRIAI 152
Cdd:PRK15439 81 AKAHQLGIYLVPQEPLLFPNLSVKENILFGL-----PKRQASMQKMKQL----LAALgCQLDLDSSAGslevADRQIVEI 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 153 ARAVVNKPKVLLLDESLSALD----YKLRKQMQiELkqlqRQLGITFIFVTHDQEEALSMSDRIIVMRDGVI 220
Cdd:PRK15439 152 LRGLMRDSRILILDEPTASLTpaetERLFSRIR-EL----LAQGVGIVFISHKLPEIRQLADRISVMRDGTI 218
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
8-232 |
3.97e-28 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 114.78 E-value: 3.97e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 8 GKPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEqnvtqvpaeqrhvnT 87
Cdd:COG0488 312 GKKVLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLGE--------------T 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 88 VFQSY------ALFPHMTVFENVAFGLRMQKvpnseiEPRVMDALKMVRLEPMAQRKP-HQLSGGQQQRIAIARAVVNKP 160
Cdd:COG0488 378 VKIGYfdqhqeELDPDKTVLDELRDGAPGGT------EQEVRGYLGRFLFSGDDAFKPvGVLSGGEKARLALAKLLLSPP 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 161 KVLLLDE--------SLSAL-----DYKlrkqmqielkqlqrqlGiTFIFVTHDQE--EALsmSDRIIVMRDG-VIEQDG 224
Cdd:COG0488 452 NVLLLDEptnhldieTLEALeealdDFP----------------G-TVLLVSHDRYflDRV--ATRILEFEDGgVREYPG 512
|
....*...
gi 1140790956 225 TpreiYEE 232
Cdd:COG0488 513 G----YDD 516
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
10-246 |
6.61e-28 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 110.57 E-value: 6.61e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRM-------IAGFETadSGQILLAEQ---NVTQVP 79
Cdd:PRK14271 20 PAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTlnrmndkVSGYRY--SGDVLLGGRsifNYRDVL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 80 AEQRHVNTVFQSYALFPhMTVFENVAFGLRMQK-VPNSEIEPRVMDALKMVRLEPMAQRK----PHQLSGGQQQRIAIAR 154
Cdd:PRK14271 98 EFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKlVPRKEFRGVAQARLTEVGLWDAVKDRlsdsPFRLSGGQQQLLCLAR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 155 AVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLgiTFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPK 234
Cdd:PRK14271 177 TLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL--TVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPK 254
|
250
....*....|..
gi 1140790956 235 NLFVARFIGEIN 246
Cdd:PRK14271 255 HAETARYVAGLS 266
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
24-229 |
9.13e-28 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 113.98 E-value: 9.13e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNTVFQSYALFPHmTVF 101
Cdd:TIGR01842 331 KPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETfgKHIGYLPQDVELFPG-TVA 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 102 ENVAfglRMQKVPNSEiepRVMDALKMVRLEPMAQRKPH-----------QLSGGQQQRIAIARAVVNKPKVLLLDESLS 170
Cdd:TIGR01842 410 ENIA---RFGENADPE---KIIEAAKLAGVHELILRLPDgydtvigpggaTLSGGQRQRIALARALYGDPKLVVLDEPNS 483
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 171 ALDYKLRKQMQIELKQLQRQlGITFIFVTHdQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:TIGR01842 484 NLDEEGEQALANAIKALKAR-GITVVVITH-RPSLLGCVDKILVLQDGRIARFGERDEV 540
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
24-232 |
1.34e-27 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 108.95 E-value: 1.34e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVntvfqsyALFP--HMT 99
Cdd:PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQlaRRL-------ALLPqhHLT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 100 -----VFENVAFG----LRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLS 170
Cdd:PRK11231 88 pegitVRELVAYGrspwLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTT 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1140790956 171 ALDYklrkQMQIELKQLQRQL---GITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:PRK11231 168 YLDI----NHQVELMRLMRELntqGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-167 |
1.98e-27 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 108.28 E-value: 1.98e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 1 MNAKKSVGkPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPa 80
Cdd:COG4674 1 MSLDTMHG-PILYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLD- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 81 EQRHVNT----VFQSYALFPHMTVFENVAFGLRMQK--------VPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQ 148
Cdd:COG4674 79 EHEIARLgigrKFQKPTVFEELTVFENLELALKGDRgvfaslfaRLTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQ 158
|
170
....*....|....*....
gi 1140790956 149 RIAIARAVVNKPKVLLLDE 167
Cdd:COG4674 159 WLEIGMLLAQDPKLLLLDE 177
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
10-218 |
2.16e-27 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 107.91 E-value: 2.16e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSF-----DGKE--VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQN--VTQVPA 80
Cdd:COG4778 3 TLLEVENLSKTFtlhlqGGKRlpVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDGgwVDLAQA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 81 EQRHV-----NT---VFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRL-EPMAQRKPHQLSGGQQQRIA 151
Cdd:COG4778 83 SPREIlalrrRTigyVSQFLRVIPRVSALDVVAEPLLERGVDREEARARARELLARLNLpERLWDLPPATFSGGEQQRVN 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 152 IARAVVNKPKVLLLDESLSALDYKLRkQMQIELKQLQRQLGITFIFVTHDQE--EALsmSDRIIVMRDG 218
Cdd:COG4778 163 IARGFIADPPLLLLDEPTASLDAANR-AVVVELIEEAKARGTAIIGIFHDEEvrEAV--ADRVVDVTPF 228
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
24-233 |
2.36e-27 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 113.66 E-value: 2.36e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE--QRHVNTVFQSYALFPHmTVF 101
Cdd:TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHylHRQVALVGQEPVLFSG-SVR 572
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 102 ENVAFGLRmqKVPNSEIeprvMDALKMVRLEPMAQRKPH-----------QLSGGQQQRIAIARAVVNKPKVLLLDESLS 170
Cdd:TIGR00958 573 ENIAYGLT--DTPDEEI----MAAAKAANAHDFIMEFPNgydtevgekgsQLSGGQKQRIAIARALVRKPRVLILDEATS 646
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 171 ALDyklrKQMQIELKQLQRQLGITFIFVTHdQEEALSMSDRIIVMRDGVIEQDGTPREIYEEP 233
Cdd:TIGR00958 647 ALD----AECEQLLQESRSRASRTVLLIAH-RLSTVERADQILVLKKGSVVEMGTHKQLMEDQ 704
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
10-229 |
2.41e-27 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 111.47 E-value: 2.41e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNT 87
Cdd:PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAasRRVAS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 88 VFQSYALFPHMTVFENVafglRMQKVPN-------SEIEPRVMD-ALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNK 159
Cdd:PRK09536 82 VPQDTSLSFEFDVRQVV----EMGRTPHrsrfdtwTETDRAAVErAMERTGVAQFADRPVTSLSGGERQRVLLARALAQA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 160 PKVLLLDESLSALDYklrkQMQIELKQLQRQL---GITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:PRK09536 158 TPVLLLDEPTASLDI----NHQVRTLELVRRLvddGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
23-242 |
3.31e-27 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 113.30 E-value: 3.31e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 23 GKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNTVFQSYALFPHmTV 100
Cdd:TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTlrQFINYLPQEPYIFSG-SI 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 101 FENvafgLRMQKVPNSEIEpRVMDALKMVRLEPMAQRKPH-----------QLSGGQQQRIAIARAVVNKPKVLLLDESL 169
Cdd:TIGR01193 565 LEN----LLLGAKENVSQD-EIWAACEIAEIKDDIENMPLgyqtelseegsSISGGQKQRIALARALLTDSKVLILDEST 639
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 170 SALDYKLRKQMQIELKQLQRQlgiTFIFVTHDQEEAlSMSDRIIVMRDGVIEQDGTPREIYEEpkNLFVARFI 242
Cdd:TIGR01193 640 SNLDTITEKKIVNNLLNLQDK---TIIFVAHRLSVA-KQSDKIIVLDHGKIIEQGSHDELLDR--NGFYASLI 706
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
25-242 |
3.65e-27 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 108.34 E-value: 3.65e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 25 EVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQR--HVNTVFQ--SYALFPHMTV 100
Cdd:PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRsqRIRMIFQdpSTSLNPRQRI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 101 FENVAFGLRMQ-KVPNSEIEPRVMDALKMVRLEP-MAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRK 178
Cdd:PRK15112 107 SQILDFPLRLNtDLEPEQREKQIIETLRQVGLLPdHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRS 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1140790956 179 QMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFI 242
Cdd:PRK15112 187 QLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLHELTKRLI 250
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
29-232 |
3.73e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 108.68 E-value: 3.73e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 29 NLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT------QVPAEQRHVNTVFQsyalFPHMTVFE 102
Cdd:PRK13649 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITstsknkDIKQIRKKVGLVFQ----FPESQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 103 -----NVAFGLRMQKVPNSEIEPRVMDALKMVRL-EPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKL 176
Cdd:PRK13649 101 etvlkDVAFGPQNFGVSQEEAEALAREKLALVGIsESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1140790956 177 RKQMQIELKQLQrQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:PRK13649 181 RKELMTLFKKLH-QSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
6-201 |
5.60e-27 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 111.68 E-value: 5.60e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 6 SVGKPVVQLTGISKSFDG-KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPA-EQR 83
Cdd:TIGR02868 329 GLGKPTLELRDLSAGYPGaPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQdEVR 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 HVNTVF-QSYALFpHMTVFENVAFGlrMQKVPNSEieprVMDALKMVRLEPMAQRKPH-----------QLSGGQQQRIA 151
Cdd:TIGR02868 409 RRVSVCaQDAHLF-DTTVRENLRLA--RPDATDEE----LWAALERVGLADWLRALPDgldtvlgeggaRLSGGERQRLA 481
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1140790956 152 IARAVVNKPKVLLLDESLSALDYKLRKQMQIELkqLQRQLGITFIFVTHD 201
Cdd:TIGR02868 482 LARALLADAPILLLDEPTEHLDAETADELLEDL--LAALSGRTVVLITHH 529
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
29-236 |
8.14e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 107.61 E-value: 8.14e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 29 NLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT------QVPAEQRHVNTVFQsyalFPHMTVFE 102
Cdd:PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITpetgnkNLKKLRKKVSLVFQ----FPEAQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 103 N-----VAFGLRMQKVPNSEIEPRVMDALKMVRL-EPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKL 176
Cdd:PRK13641 101 NtvlkdVEFGPKNFGFSEDEAKEKALKWLKKVGLsEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 177 RKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNL 236
Cdd:PRK13641 181 RKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKEWL 239
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
7-228 |
1.38e-26 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 111.07 E-value: 1.38e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 7 VGKPVVQLTGISKSFDGK-EVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE--QR 83
Cdd:COG5265 353 VGGGEVRFENVSFGYDPErPILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQAslRA 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 HVNTVFQSYALFpHMTVFENVAFGlrmqKVPNSEIEprVMDALKMVRLEPMAQRKPHQ-----------LSGGQQQRIAI 152
Cdd:COG5265 433 AIGIVPQDTVLF-NDTIAYNIAYG----RPDASEEE--VEAAARAAQIHDFIESLPDGydtrvgerglkLSGGEKQRVAI 505
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 153 ARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRqlGITFIFVTHdqeeALSM---SDRIIVMRDGVIEQDGTPRE 228
Cdd:COG5265 506 ARTLLKNPPILIFDEATSALDSRTERAIQAALREVAR--GRTTLVIAH----RLSTivdADEILVLEAGRIVERGTHAE 578
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
27-230 |
1.40e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 107.40 E-value: 1.40e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 27 IGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAE-------QNVTQVPAEQRHVNTVFQ--SYALFPH 97
Cdd:PRK13645 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDyaipanlKKIKEVKRLRKEIGLVFQfpEYQLFQE 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 98 mTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRL-EPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKL 176
Cdd:PRK13645 107 -TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKG 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1140790956 177 RKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIY 230
Cdd:PRK13645 186 EEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
22-200 |
2.03e-26 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 104.36 E-value: 2.03e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNV-TQVPAEQRHVNTVFQSYALFPHMTV 100
Cdd:TIGR01189 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLaEQRDEPHENILYLGHLPGLKPELSA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 101 FENVAFGLRMQKVPNSEIEprvmDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYK-LRKQ 179
Cdd:TIGR01189 91 LENLHFWAAIHGGAQRTIE----DALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAgVALL 166
|
170 180
....*....|....*....|.
gi 1140790956 180 MQIELKQLQRQlGITfIFVTH 200
Cdd:TIGR01189 167 AGLLRAHLARG-GIV-LLTTH 185
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
24-220 |
3.24e-26 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 104.66 E-value: 3.24e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETAD---SGQILLAEQNVTqvPAE-QRHVNTVFQSYALFPHMT 99
Cdd:cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGgttSGQILFNGQPRK--PDQfQKCVAYVRQDDILLPGLT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 100 VFENVAFG--LRMQ-KVPNSEIEPRVMD-ALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYK 175
Cdd:cd03234 98 VRETLTYTaiLRLPrKSSDAIRKKRVEDvLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSF 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1140790956 176 LRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVI 220
Cdd:cd03234 178 TALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEI 222
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
9-230 |
4.53e-26 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 105.01 E-value: 4.53e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 9 KPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVP------AEQ 82
Cdd:PRK11701 4 QPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDlyalseAER 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 83 RHvntVFQSYALFPHmtvfENVAFGLRMQKVPNSEIEPRVMD------------ALK-MVRLEPMAQR---KPHQLSGGQ 146
Cdd:PRK11701 84 RR---LLRTEWGFVH----QHPRDGLRMQVSAGGNIGERLMAvgarhygdiratAGDwLERVEIDAARiddLPTTFSGGM 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 147 QQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDG-VIEQDGT 225
Cdd:PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGrVVESGLT 236
|
250
....*....|.
gi 1140790956 226 ------PREIY 230
Cdd:PRK11701 237 dqvlddPQHPY 247
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
8-218 |
5.00e-26 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 102.90 E-value: 5.00e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 8 GKPVVQLTGISksfdGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNT 87
Cdd:cd03215 1 GEPVLEVRGLS----VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 88 VF------QSYALFPHMTVFENVAFglrmqkvpnseieprvmdalkmvrlepmaqrkPHQLSGGQQQRIAIARAVVNKPK 161
Cdd:cd03215 77 IAyvpedrKREGLVLDLSVAENIAL--------------------------------SSLLSGGNQQKVVLARWLARDPR 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 162 VLLLDESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDG 218
Cdd:cd03215 125 VLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEG 180
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
29-200 |
5.29e-26 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 103.35 E-value: 5.29e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 29 NLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQR-------HVNtvfqsyALFPHMTVF 101
Cdd:PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHqdllylgHQP------GIKTELTAL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 102 ENVAFGLRMQKVPNSEiepRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQ 181
Cdd:PRK13538 93 ENLRFYQRLHGPGDDE---ALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLE 169
|
170
....*....|....*....
gi 1140790956 182 IELKQLQRQLGITfIFVTH 200
Cdd:PRK13538 170 ALLAQHAEQGGMV-ILTTH 187
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
29-232 |
6.04e-26 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 104.39 E-value: 6.04e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 29 NLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQI--------LLAeqnvtqvpaeqrhVNTVFQsyalfPHMTV 100
Cdd:COG1134 44 DVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVevngrvsaLLE-------------LGAGFH-----PELTG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 101 FENVAFGLRMQKVPNSEIEPRV------------MDalkmvrlEPMaqrkpHQLSGGQQQRIAIARAVVNKPKVLLLDES 168
Cdd:COG1134 106 RENIYLNGRLLGLSRKEIDEKFdeivefaelgdfID-------QPV-----KTYSSGMRARLAFAVATAVDPDILLVDEV 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1140790956 169 LSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:COG1134 174 LAVGDAAFQKKCLARIRELRES-GRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEVIAA 236
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
24-229 |
9.11e-26 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 104.30 E-value: 9.11e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ--RHVNTVFQSYALFPHMTVF 101
Cdd:PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEvaRRIGLLAQNATTPGDITVQ 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 102 ENVAFGlRMQKVP-----NSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKL 176
Cdd:PRK10253 100 ELVARG-RYPHQPlftrwRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 177 RKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:PRK10253 179 QIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
17-229 |
1.28e-25 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 103.43 E-value: 1.28e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 17 ISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRH---VNTVFQSYA 93
Cdd:PRK10895 9 LAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARArrgIGYLPQEAS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 94 LFPHMTVFENVAFGLRMQKVPNSEI-EPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSAL 172
Cdd:PRK10895 89 IFRRLSVYDNLMAVLQIRDDLSAEQrEDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGV 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 173 DyklrKQMQIELKQLQRQL---GITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:PRK10895 169 D----PISVIDIKRIIEHLrdsGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
27-233 |
1.32e-25 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 105.19 E-value: 1.32e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 27 IGNLDLNVNHGEFLTILGPSGCGKT-TVLRM---------IAGFETADSGQIL-LAEQNVTQVPAEQrhVNTVFQS--YA 93
Cdd:PRK09473 32 VNDLNFSLRAGETLGIVGESGSGKSqTAFALmgllaangrIGGSATFNGREILnLPEKELNKLRAEQ--ISMIFQDpmTS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 94 LFPHMTVFENVAFGL----RMQKVPNSEIEPRVMDALKMvrlePMAQRK----PHQLSGGQQQRIAIARAVVNKPKVLLL 165
Cdd:PRK09473 110 LNPYMRVGEQLMEVLmlhkGMSKAEAFEESVRMLDAVKM----PEARKRmkmyPHEFSGGMRQRVMIAMALLCRPKLLIA 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1140790956 166 DESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEP 233
Cdd:PRK09473 186 DEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQP 253
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
13-229 |
1.38e-25 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 103.71 E-value: 1.38e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 13 QLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQ--VPAEQRHVNTVFQ 90
Cdd:PRK10575 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESwsSKAFARKVAYLPQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 91 SYALFPHMTVFENVAFGlrmqKVP--------NSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKV 162
Cdd:PRK10575 93 QLPAAEGMTVRELVAIG----RYPwhgalgrfGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 163 LLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:PRK10575 169 LLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
18-218 |
1.60e-25 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 102.16 E-value: 1.60e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 18 SKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEqNVTQVPAEQRHVNTvfqsyalfph 97
Cdd:cd03250 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-SIAYVSQEPWIQNG---------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 98 mTVFENVAFGLRMQkvpnseiEPRVMDALKMVRLEPMAQRKPHQ-----------LSGGQQQRIAIARAVVNKPKVLLLD 166
Cdd:cd03250 81 -TIRENILFGKPFD-------EERYEKVIKACALEPDLEILPDGdlteigekginLSGGQKQRISLARAVYSDADIYLLD 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1140790956 167 ESLSALDYKLRKQMqieLKQLQRQLGI---TFIFVTHdQEEALSMSDRIIVMRDG 218
Cdd:cd03250 153 DPLSAVDAHVGRHI---FENCILGLLLnnkTRILVTH-QLQLLPHADQIVVLDNG 203
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
2-224 |
1.92e-25 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 102.23 E-value: 1.92e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 2 NAKKSVGKPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQnVTQVPAe 81
Cdd:cd03220 13 YKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR-VSSLLG- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 82 qrhVNTVFQsyalfPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPK 161
Cdd:cd03220 91 ---LGGGFN-----PELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPD 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 162 VLLLDESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDG 224
Cdd:cd03220 163 ILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-222 |
2.35e-25 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 107.22 E-value: 2.35e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 2 NAKKSVGKPVVQLTGISKSFDGKE--VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVP 79
Cdd:PRK11160 329 TSTAAADQVSLTLNNVSFTYPDQPqpVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYS 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 80 AEQ--RHVNTVFQSYALFPHmTVFENVAFGLrmqkvPNSEIEpRVMDALKMVRLEPMAQRKP----------HQLSGGQQ 147
Cdd:PRK11160 409 EAAlrQAISVVSQRVHLFSA-TLRDNLLLAA-----PNASDE-ALIEVLQQVGLEKLLEDDKglnawlgeggRQLSGGEQ 481
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1140790956 148 QRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRqlGITFIFVTHdQEEALSMSDRIIVMRDG-VIEQ 222
Cdd:PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITH-RLTGLEQFDRICVMDNGqIIEQ 554
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
22-200 |
2.42e-25 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 100.31 E-value: 2.42e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQ-NVTQVPaeQRhvntvfqsyalfPHMTV 100
Cdd:cd03223 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGeDLLFLP--QR------------PYLPL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 101 fenvafG-LRmqkvpnseieprvmDALkmvrlepmaqRKP--HQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDyklr 177
Cdd:cd03223 78 ------GtLR--------------EQL----------IYPwdDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALD---- 123
|
170 180
....*....|....*....|...
gi 1140790956 178 KQMQIELKQLQRQLGITFIFVTH 200
Cdd:cd03223 124 EESEDRLYQLLKELGITVISVGH 146
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
29-266 |
7.51e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 102.50 E-value: 7.51e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 29 NLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ------RHVNTVFQsyalFPHMTVFE 102
Cdd:PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKeikpvrKKVGVVFQ----FPESQLFE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 103 -----NVAFGLRMQKVPNSEIEPRVMDALKMVRL-EPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKL 176
Cdd:PRK13643 100 etvlkDVAFGPQNFGIPKEKAEKIAAEKLEMVGLaDEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 177 RKQMqIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVArfigEINVFEATAKSRQ 256
Cdd:PRK13643 180 RIEM-MQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAH----ELGVPKATHFADQ 254
|
250
....*....|
gi 1140790956 257 DEKRIVATIE 266
Cdd:PRK13643 255 LQKTGAVTFE 264
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
18-218 |
7.54e-25 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 99.93 E-value: 7.54e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 18 SKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAG--FETADSGQILLAEQNVTQvPAEQRHVNTVFQSYALF 95
Cdd:cd03213 16 SPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGrrTGLGVSGEVLINGRPLDK-RSFRKIIGYVPQDDILH 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 96 PHMTVFENVAFGLRMQkvpnseieprvmdalkmvrlepmaqrkphQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYK 175
Cdd:cd03213 95 PTLTVRETLMFAAKLR-----------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1140790956 176 LRKQMQIELKQLqRQLGITFIFVTHD-QEEALSMSDRIIVMRDG 218
Cdd:cd03213 146 SALQVMSLLRRL-ADTGRTIICSIHQpSSEIFELFDKLLLLSQG 188
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
12-308 |
9.31e-25 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 105.27 E-value: 9.31e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFET--ADSGQIL-------------------- 69
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQyePTSGRIIyhvalcekcgyverpskvge 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 70 --------LAEQNV-------TQVPAEQRHVNTVFQ-SYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEP 133
Cdd:TIGR03269 81 pcpvcggtLEPEEVdfwnlsdKLRRRIRKRIAIMLQrTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 134 MAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRII 213
Cdd:TIGR03269 161 RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 214 VMRDGVIEQDGTPREIyeepknlfVARFIGEINVFEaTAKSRQDEKRIVATIEGEESIIYHDKDVtpgqklqvlLRPEDL 293
Cdd:TIGR03269 241 WLENGEIKEEGTPDEV--------VAVFMEGVSEVE-KECEVEVGEPIIKVRNVSKRYISVDRGV---------VKAVDN 302
|
330
....*....|....*
gi 1140790956 294 RIEEIKESEQRGIVG 308
Cdd:TIGR03269 303 VSLEVKEGEIFGIVG 317
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
12-218 |
1.12e-24 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 97.90 E-value: 1.12e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGqillaeqnvtqvpaeqrhvntvfqs 91
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG------------------------- 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 92 yalfphmtvfenvafglrmqkvpnseiEPRVMDALKMVRLEpmaqrkphQLSGGQQQRIAIARAVVNKPKVLLLDESLSA 171
Cdd:cd03221 56 ---------------------------IVTWGSTVKIGYFE--------QLSGGEKMRLALAKLLLENPNLLLLDEPTNH 100
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1140790956 172 LDYKLRKQMQIELKQLQRqlgiTFIFVTHDQEEALSMSDRIIVMRDG 218
Cdd:cd03221 101 LDLESIEALEEALKEYPG----TVILVSHDRYFLDQVATKIIELEDG 143
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
20-237 |
1.38e-24 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 104.93 E-value: 1.38e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 20 SFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFeTADSGQILLAEQNVTQVPAEQ--RHVNTVFQSYALFpH 97
Cdd:PRK11174 359 SPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF-LPYQGSLKINGIELRELDPESwrKHLSWVGQNPQLP-H 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 98 MTVFENVAFGlrmqkvpNSEI-EPRVMDALKMVRLEPMAQRKPH-----------QLSGGQQQRIAIARAVVNKPKVLLL 165
Cdd:PRK11174 437 GTLRDNVLLG-------NPDAsDEQLQQALENAWVSEFLPLLPQgldtpigdqaaGLSVGQAQRLALARALLQPCQLLLL 509
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 166 DESLSALDYKLRKQMQIELKQLQRQLgiTFIFVTHdQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPkNLF 237
Cdd:PRK11174 510 DEPTASLDAHSEQLVMQALNAASRRQ--TTLMVTH-QLEDLAQWDQIWVMQDGQIVQQGDYAELSQAG-GLF 577
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
21-230 |
1.50e-24 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 101.24 E-value: 1.50e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 21 FDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQ----VPAEQRHVNTVFQSyalfP 96
Cdd:PRK13638 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYskrgLLALRQQVATVFQD----P 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 97 HMTVF-----ENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSA 171
Cdd:PRK13638 87 EQQIFytdidSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAG 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 172 LDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIY 230
Cdd:PRK13638 167 LDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
29-235 |
2.27e-24 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 104.55 E-value: 2.27e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 29 NLDLNVNHGEFLTILGPSGCGKT-TVLRMIAGFETA----DSGQILLAEQN------VTQVPAEQRHVN-----TVFQS- 91
Cdd:PRK10261 34 NLSFSLQRGETLAIVGESGSGKSvTALALMRLLEQAgglvQCDKMLLRRRSrqvielSEQSAAQMRHVRgadmaMIFQEp 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 92 -YALFPHMTVFENVAFGLRMQKVPNSEIE----PRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLD 166
Cdd:PRK10261 114 mTSLNPVFTVGEQIAESIRLHQGASREEAmveaKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIAD 193
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 167 ESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKN 235
Cdd:PRK10261 194 EPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQH 262
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
31-210 |
6.62e-24 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 99.09 E-value: 6.62e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 31 DLNVNHGEFLTI---------------LGPSGCGKTTVLR-------MIAGFETadSGQILLAEQNV--TQV-PAE-QRH 84
Cdd:PRK14243 15 NLNVYYGSFLAVknvwldipknqitafIGPSGCGKSTILRcfnrlndLIPGFRV--EGKVTFHGKNLyaPDVdPVEvRRR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 85 VNTVFQSYALFPHmTVFENVAFGLRMQ--KVPNSEIEPR----------VMDALKMVRLepmaqrkphQLSGGQQQRIAI 152
Cdd:PRK14243 93 IGMVFQKPNPFPK-SIYDNIAYGARINgyKGDMDELVERslrqaalwdeVKDKLKQSGL---------SLSGGQQQRLCI 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1140790956 153 ARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLgiTFIFVTHDQEEALSMSD 210
Cdd:PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQY--TIIIVTHNMQQAARVSD 218
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
24-236 |
1.35e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 99.08 E-value: 1.35e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQV-------PAEQRhVNTVFQsyalFP 96
Cdd:PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKtkdkyirPVRKR-IGMVFQ----FP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 97 HMTVFEN-----VAFGLRMQKVPNSEIEPRVMDALKMVRLE-PMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLS 170
Cdd:PRK13646 95 ESQLFEDtvereIIFGPKNFKMNLDEVKNYAHRLLMDLGFSrDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1140790956 171 ALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNL 236
Cdd:PRK13646 175 GLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKL 240
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
9-224 |
1.48e-23 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 97.64 E-value: 1.48e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 9 KPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQ---RHV 85
Cdd:PRK11614 3 KVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKimrEAV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 86 NTVFQSYALFPHMTVFENVAFG--LRMQKVPNSEIEpRVMDALKmvRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVL 163
Cdd:PRK11614 83 AIVPEGRRVFSRMTVEENLAMGgfFAERDQFQERIK-WVYELFP--RLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 164 LLDESLSALDYKLRKQMQIELKQLqRQLGITFIFVTHDQEEALSMSDRIIVMRDG--VIEQDG 224
Cdd:PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLENGhvVLEDTG 221
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
23-173 |
1.71e-23 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 96.48 E-value: 1.71e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 23 GKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT-QVPAEQRHvntvfqsY-----ALFP 96
Cdd:PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDdPDVAEACH-------YlghrnAMKP 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1140790956 97 HMTVFENVAFglrMQKVPNSEiEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIAR-AVVNKPkVLLLDESLSALD 173
Cdd:PRK13539 87 ALTVAENLEF---WAAFLGGE-ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARlLVSNRP-IWILDEPTAALD 159
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
12-224 |
2.15e-23 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 95.46 E-value: 2.15e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKE--VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVNTVF 89
Cdd:cd03247 1 LSINNVSFSYPEQEqqVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 90 -QSYALFpHMTVFENVafGLRmqkvpnseieprvmdalkmvrlepmaqrkphqLSGGQQQRIAIARAVVNKPKVLLLDES 168
Cdd:cd03247 81 nQRPYLF-DTTLRNNL--GRR--------------------------------FSGGERQRLALARILLQDAPIVLLDEP 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 169 LSALDYKLRKQMqieLKQLQRQL-GITFIFVTHdQEEALSMSDRIIVMRDGVIEQDG 224
Cdd:cd03247 126 TVGLDPITERQL---LSLIFEVLkDKTLIWITH-HLTGIEHMDKILFLENGKIIMQG 178
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
28-236 |
5.83e-23 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 96.06 E-value: 5.83e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 28 GNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFeTADSGQILLAEQNVTQVPA-EQRHVNTVF--QSYALFPhMTVFENV 104
Cdd:COG4138 13 GPISAQVNAGELIHLIGPNGAGKSTLLARMAGL-LPGQGEILLNGRPLSDWSAaELARHRAYLsqQQSPPFA-MPVFQYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 105 AFGLRmQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAV------VN-KPKVLLLDESLSALDYklr 177
Cdd:COG4138 91 ALHQP-AGASSEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLlqvwptINpEGQLLLLDEPMNSLDV--- 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 178 kQMQIELKQLQRQL---GITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYeEPKNL 236
Cdd:COG4138 167 -AQQAALDRLLRELcqqGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVM-TPENL 226
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
11-218 |
1.18e-22 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 99.13 E-value: 1.18e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADS--GQILLAEQNVTQV---PAEQRHV 85
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTwdGEIYWSGSPLKASnirDTERAGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 86 NTVFQSYALFPHMTVFENVAFG----LRMQKVPNSEIEPRVMDALKMVRLEPMAQRKP-HQLSGGQQQRIAIARAVVNKP 160
Cdd:TIGR02633 81 VIIHQELTLVPELSVAENIFLGneitLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPvGDYGGGQQQLVEIAKALNKQA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 161 KVLLLDESLSALDyklRKQMQIEL---KQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDG 218
Cdd:TIGR02633 161 RLLILDEPSSSLT---EKETEILLdiiRDLKAH-GVACVYISHKLNEVKAVCDTICVIRDG 217
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
20-213 |
3.72e-22 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 92.68 E-value: 3.72e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 20 SFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQillaeqnVTQVPAeqRHVNTVFQSYAL---FP 96
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGT-------VRRAGG--ARVAYVPQRSEVpdsLP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 97 hMTVFENVAFGL----RMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSAL 172
Cdd:NF040873 72 -LTVRDLVAMGRwarrGLWRRLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGL 150
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1140790956 173 DYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRII 213
Cdd:NF040873 151 DAESRERIIALLAEEHAR-GATVVVVTHDLELVRRADPCVL 190
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
26-220 |
6.97e-22 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 92.92 E-value: 6.97e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 26 VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQRH--VNTVFQSYALFPHmTVFEN 103
Cdd:cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHskVSLVGQEPVLFAR-SLQDN 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 104 VAFGLrmQKVPNSEIEPRVMDALKMVRLEPMAQ-------RKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKL 176
Cdd:cd03248 108 IAYGL--QSCSFECVKEAAQKAHAHSFISELASgydtevgEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1140790956 177 RKQMQIELKQ-LQRQlgiTFIFVTHdQEEALSMSDRIIVMRDGVI 220
Cdd:cd03248 186 EQQVQQALYDwPERR---TVLVIAH-RLSTVERADQILVLDGGRI 226
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
34-255 |
1.76e-21 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 93.65 E-value: 1.76e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 34 VNHGEFLTILGPSGCGKTTVLRMIAGF------ETADsgQILLAEQNVTQVPAEQRH------VNTVFQS--YALFPHMT 99
Cdd:PRK11022 30 VKQGEVVGIVGESGSGKSVSSLAIMGLidypgrVMAE--KLEFNGQDLQRISEKERRnlvgaeVAMIFQDpmTSLNPCYT 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 100 VFENVAFGLRMQKVPN-SEIEPRVMDALKMVRLEPMAQR---KPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYK 175
Cdd:PRK11022 108 VGFQIMEAIKVHQGGNkKTRRQRAIDLLNQVGIPDPASRldvYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVT 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 176 LRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPKNLFVARFIGEINVFeATAKSR 255
Cdd:PRK11022 188 IQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQALLRALPEF-AQDKAR 266
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
24-224 |
2.21e-21 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 91.63 E-value: 2.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEqnvtQVPAEQR-----HVNTVF-QSYALFPH 97
Cdd:cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG----LVPWKRRkkflrRIGVVFgQKTQLWWD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 98 MTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLR 177
Cdd:cd03267 110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQ 189
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1140790956 178 KQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDG 224
Cdd:cd03267 190 ENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
8-220 |
2.81e-21 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 94.70 E-value: 2.81e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 8 GKPVVQLTGISksfdGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQ---------- 77
Cdd:COG1129 253 GEVVLEVEGLS----VGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIrsprdairag 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 78 ---VPaEQRHvntvfqSYALFPHMTVFENVAFGL-----RMQKVPNSEIEPRVMDALKMVRLEPMAQRKP-HQLSGGQQQ 148
Cdd:COG1129 329 iayVP-EDRK------GEGLVLDLSIRENITLASldrlsRGGLLDRRRERALAEEYIKRLRIKTPSPEQPvGNLSGGNQQ 401
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 149 RIAIARAVVNKPKVLLLDESLSALD-------YKLrkqmqieLKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVI 220
Cdd:COG1129 402 KVVLAKWLATDPKVLILDEPTRGIDvgakaeiYRL-------IRELAAE-GKAVIVISSELPELLGLSDRILVMREGRI 472
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
14-201 |
3.28e-21 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 94.75 E-value: 3.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 14 LTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAeQNVTqvpaeqrhVNTVFQSYA 93
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIP-KGLR--------IGYLPQEPP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 94 LFPHMTVFENVAFGLR------------MQKVPNSE--------------------IEPRVMDALKMVRL-EPMAQRKPH 140
Cdd:COG0488 72 LDDDLTVLDTVLDGDAelraleaeleelEAKLAEPDedlerlaelqeefealggweAEARAEEILSGLGFpEEDLDRPVS 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1140790956 141 QLSGGQQQRIAIARAVVNKPKVLLLDESLSALDyklrkqmqIE----LKQLQRQLGITFIFVTHD 201
Cdd:COG0488 152 ELSGGWRRRVALARALLSEPDLLLLDEPTNHLD--------LEsiewLEEFLKNYPGTVLVVSHD 208
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
10-218 |
5.73e-21 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 93.82 E-value: 5.73e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQnvtqvpaEQRHVNT-- 87
Cdd:PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQ-------EMRFASTta 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 88 --------VFQSYALFPHMTVFENVAFGL---RMQKVPNSEIEPRVMDALKM--VRLEPMAQRKphQLSGGQQQRIAIAR 154
Cdd:PRK11288 76 alaagvaiIYQELHLVPEMTVAENLYLGQlphKGGIVNRRLLNYEAREQLEHlgVDIDPDTPLK--YLSIGQRQMVEIAK 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 155 AVVNKPKVLLLDE---SLSAldyklrkqMQIE-LKQLQRQL---GITFIFVTHDQEEALSMSDRIIVMRDG 218
Cdd:PRK11288 154 ALARNARVIAFDEptsSLSA--------REIEqLFRVIRELraeGRVILYVSHRMEEIFALCDAITVFKDG 216
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
10-218 |
6.63e-21 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 93.84 E-value: 6.63e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAG---FETADsGQIL-----LAEQNVTQvpAE 81
Cdd:PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGvypHGTYE-GEIIfegeeLQASNIRD--TE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 82 QRHVNTVFQSYALFPHMTVFENVAFGlrmqkvpnSEIEPR-VMDALKM----------VRLEPMAQRKPHQLSGGQQQRI 150
Cdd:PRK13549 81 RAGIAIIHQELALVKELSVLENIFLG--------NEITPGgIMDYDAMylraqkllaqLKLDINPATPVGNLGLGQQQLV 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1140790956 151 AIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDG 218
Cdd:PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIRDG 219
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
11-173 |
8.49e-21 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 89.09 E-value: 8.49e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGiskSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQV-PAEQRHVNTVF 89
Cdd:cd03231 3 ADELTC---ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQrDSIARGLLYLG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 90 QSYALFPHMTVFENVAFGLRMQKvpnseiEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESL 169
Cdd:cd03231 80 HAPGIKTTLSVLENLRFWHADHS------DEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153
|
....
gi 1140790956 170 SALD 173
Cdd:cd03231 154 TALD 157
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
1-173 |
9.37e-21 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 89.52 E-value: 9.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 1 MNAKKSVGKPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQvpA 80
Cdd:PRK13543 1 MIEPLHTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR--G 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 81 EQ-RHVNTVFQSYALFPHMTVFENVAF-----GLRMQKVPNSeieprvmdALKMVRLEPMAQRKPHQLSGGQQQRIAIAR 154
Cdd:PRK13543 79 DRsRFMAYLGHLPGLKADLSTLENLHFlcglhGRRAKQMPGS--------ALAIVGLAGYEDTLVRQLSAGQKKRLALAR 150
|
170
....*....|....*....
gi 1140790956 155 AVVNKPKVLLLDESLSALD 173
Cdd:PRK13543 151 LWLSPAPLWLLDEPYANLD 169
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
10-241 |
1.11e-20 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 90.17 E-value: 1.11e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQ-NVTQVPaEQRHVNTv 88
Cdd:PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKlRIGYVP-QKLYLDT- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 89 fqsyalfphmTVFENVAFGLRMQK-VPNSEIEPrvmdALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDE 167
Cdd:PRK09544 81 ----------TLPLTVNRFLRLRPgTKKEDILP----ALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1140790956 168 SLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMrDGVIEQDGTPREIYEEPKnlFVARF 241
Cdd:PRK09544 147 PTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL-NHHICCSGTPEVVSLHPE--FISMF 217
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
11-233 |
2.11e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 90.68 E-value: 2.11e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFDGKE-----VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQI-----------LLAEQN 74
Cdd:PRK13631 21 ILRVKNLYCVFDEKQenelvALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIqvgdiyigdkkNNHELI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 75 VTQVPAE-------QRHVNTVFQ--SYALFPHmTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRL-EPMAQRKPHQLSG 144
Cdd:PRK13631 101 TNPYSKKiknfkelRRRVSMVFQfpEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLdDSYLERSPFGLSG 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 145 GQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMqIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDG 224
Cdd:PRK13631 180 GQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEM-MQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTG 258
|
....*....
gi 1140790956 225 TPREIYEEP 233
Cdd:PRK13631 259 TPYEIFTDQ 267
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
12-225 |
4.21e-20 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 91.56 E-value: 4.21e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGK-EVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE--QRHVNTV 88
Cdd:PRK13657 335 VEFDDVSFSYDNSrQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRAslRRNIAVV 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 89 FQSYALFpHMTVFENvafgLRMQKVPNSEIEprVMDALKMVRLEPMAQRKPH-----------QLSGGQQQRIAIARAVV 157
Cdd:PRK13657 415 FQDAGLF-NRSIEDN----IRVGRPDATDEE--MRAAAERAQAHDFIERKPDgydtvvgergrQLSGGERQRLAIARALL 487
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 158 NKPKVLLLDESLSALDYKLRKQMQIELKQLqRQLGITFIfVTHdqeeALSM---SDRIIVMRDGVIEQDGT 225
Cdd:PRK13657 488 KDPPILILDEATSALDVETEAKVKAALDEL-MKGRTTFI-IAH----RLSTvrnADRILVFDNGRVVESGS 552
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
17-232 |
5.95e-20 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 91.23 E-value: 5.95e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 17 ISKSFDGKEV--IGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT--QVPAEQRHVNTVFQSY 92
Cdd:PRK11176 347 VTFTYPGKEVpaLRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRdyTLASLRNQVALVSQNV 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 93 ALFpHMTVFENVAFGlRMQKVPNSEIEPRVMDALKMVRLEPMAQ-------RKPHQLSGGQQQRIAIARAVVNKPKVLLL 165
Cdd:PRK11176 427 HLF-NDTIANNIAYA-RTEQYSREQIEEAARMAYAMDFINKMDNgldtvigENGVLLSGGQRQRIAIARALLRDSPILIL 504
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 166 DESLSALDYKLRKQMQIELKQLQRQLgiTFIFVTHdqeeALSM---SDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:PRK11176 505 DEATSALDTESERAIQAALDELQKNR--TSLVIAH----RLSTiekADEILVVEDGEIVERGTHAELLAQ 568
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
24-225 |
6.39e-20 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 90.92 E-value: 6.39e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNHGEFLTILGPSGCGKT----TVLRMIAGFETA-DSGQILLAEQNVTQVPAEQ-RHVN-----TVFQS- 91
Cdd:PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSvtalSILRLLPSPPVVyPSGDIRFHGESLLHASEQTlRGVRgnkiaMIFQEp 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 92 -YALFPHMTV----FENVAFGLRMQKVP-NSEIeprvMDALKMVRLEPMAQR---KPHQLSGGQQQRIAIARAVVNKPKV 162
Cdd:PRK15134 102 mVSLNPLHTLekqlYEVLSLHRGMRREAaRGEI----LNCLDRVGIRQAAKRltdYPHQLSGGERQRVMIAMALLTRPEL 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1140790956 163 LLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDG-VIEQDGT 225
Cdd:PRK15134 178 LIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGrCVEQNRA 241
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
10-226 |
2.57e-19 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 90.07 E-value: 2.57e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 10 PVVQLTGISKSFD--GKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNV-TQVPAEQRHVN 86
Cdd:TIGR01257 927 PGVCVKNLVKIFEpsGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIeTNLDAVRQSLG 1006
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 87 TVFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLD 166
Cdd:TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLD 1086
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 167 ESLSALDYKLRKQMQIELkqLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTP 226
Cdd:TIGR01257 1087 EPTSGVDPYSRRSIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
12-232 |
5.51e-19 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 88.02 E-value: 5.51e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQ-NVTQVPaeQRHvntvfq 90
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENaNIGYYA--QDH------ 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 91 sYALFPH-MTVFENVAfglRMQKVPNSEIEPRVM---------DALKMVRLepmaqrkphqLSGGQQQRIAIARAVVNKP 160
Cdd:PRK15064 392 -AYDFENdLTLFDWMS---QWRQEGDDEQAVRGTlgrllfsqdDIKKSVKV----------LSGGEKGRMLFGKLMMQKP 457
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 161 KVLLLDESLSALDYKLRKQMQIELKQLQrqlGiTFIFVTHDQEEALSMSDRIIVMR-DGVIEQDGTpreiYEE 232
Cdd:PRK15064 458 NVLVMDEPTNHMDMESIESLNMALEKYE---G-TLIFVSHDREFVSSLATRIIEITpDGVVDFSGT----YEE 522
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
34-233 |
1.38e-18 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 84.21 E-value: 1.38e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 34 VNHGEFLTILGPSGCGKTTVLRMIAGFeTADSGQILLAEQNVTQVPA-EQRHVNTVF--QSYALFpHMTVFENVAFGLRm 110
Cdd:PRK03695 19 VRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAaELARHRAYLsqQQTPPF-AMPVFQYLTLHQP- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 111 QKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIArAVV------NKP--KVLLLDESLSALDYKLRKQMQI 182
Cdd:PRK03695 96 DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLA-AVVlqvwpdINPagQLLLLDEPMNSLDVAQQAALDR 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 183 ELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEP 233
Cdd:PRK03695 175 LLSELCQQ-GIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPE 224
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
37-228 |
1.43e-18 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 87.02 E-value: 1.43e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 37 GEFLTILGPSGCGKTTVLRMIAGFETAD---SGQILLaeqNVTQVPAEQRHVNTVF--QSYALFPHMTVFENVAFG--LR 109
Cdd:TIGR00955 51 GELLAVMGSSGAGKTTLMNALAFRSPKGvkgSGSVLL---NGMPIDAKEMRAISAYvqQDDLFIPTLTVREHLMFQahLR 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 110 MQK-VPNSEIEPRVMDALKMVRLEPMAQRK---PHQ---LSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQI 182
Cdd:TIGR00955 128 MPRrVTKKEKRERVDEVLQALGLRKCANTRigvPGRvkgLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQ 207
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1140790956 183 ELKQLQrQLGITFIFVTHD-QEEALSMSDRIIVMRDGVIEQDGTPRE 228
Cdd:TIGR00955 208 VLKGLA-QKGKTIICTIHQpSSELFELFDKIILMAEGRVAYLGSPDQ 253
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
9-261 |
2.07e-18 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 86.38 E-value: 2.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 9 KPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVP---AEQRHV 85
Cdd:PRK09700 3 TPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDhklAAQLGI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 86 NTVFQSYALFPHMTVFENVAFGLRMQK-------VPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVN 158
Cdd:PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKkvcgvniIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 159 KPKVLLLDESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGV-----IEQDGTPREIYE-- 231
Cdd:PRK09700 163 DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKDGSsvcsgMVSDVSNDDIVRlm 241
|
250 260 270
....*....|....*....|....*....|....*...
gi 1140790956 232 ---EPKNLFVARFIGEIN-----VFEATAKSRQDEKRI 261
Cdd:PRK09700 242 vgrELQNRFNAMKENVSNlahetVFEVRNVTSRDRKKV 279
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
22-226 |
2.46e-18 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 82.54 E-value: 2.46e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTV----LRMIagfeTADSGQILLAEQNVTQVPAEQ--RHVNTVFQSYALF 95
Cdd:cd03244 15 NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLllalFRLV----ELSSGSILIDGVDISKIGLHDlrSRISIIPQDPVLF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 96 PHmTVFENVAfglrmqkvPNSEI-EPRVMDALKMVRLEPMAQRKPHQL-----------SGGQQQRIAIARAVVNKPKVL 163
Cdd:cd03244 91 SG-TIRSNLD--------PFGEYsDEELWQALERVGLKEFVESLPGGLdtvveeggenlSVGQRQLLCLARALLRKSKIL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1140790956 164 LLDESLSALDYKLRKQMQielKQLQRQL-GITFIFVTHDQEEALSmSDRIIVMRDGVIEQDGTP 226
Cdd:cd03244 162 VLDEATASVDPETDALIQ---KTIREAFkDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDSP 221
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
8-173 |
6.45e-18 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 84.99 E-value: 6.45e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 8 GKPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEqnvtqvpaeqrhvnT 87
Cdd:TIGR03719 319 GDKVIEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIGE--------------T 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 88 VFQSY------ALFPHMTVFENVAFGLRMQKVPNSEIEPRVM---------DALKMVRlepmaqrkphQLSGGQQQRIAI 152
Cdd:TIGR03719 385 VKLAYvdqsrdALDPNKTVWEEISGGLDIIKLGKREIPSRAYvgrfnfkgsDQQKKVG----------QLSGGERNRVHL 454
|
170 180
....*....|....*....|.
gi 1140790956 153 ARAVVNKPKVLLLDESLSALD 173
Cdd:TIGR03719 455 AKTLKSGGNVLLLDEPTNDLD 475
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
3-220 |
6.50e-18 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 84.69 E-value: 6.50e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 3 AKKSVGKPVVQLTGIS-KSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE 81
Cdd:COG3845 249 APAEPGEVVLEVENLSvRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPR 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 82 QRHVNTVF------QSYALFPHMTVFENVAFGL--RMQKVPNSEIEPRVMD--ALKM-----VRLePMAQRKPHQLSGGQ 146
Cdd:COG3845 329 ERRRLGVAyipedrLGRGLVPDMSVAENLILGRyrRPPFSRGGFLDRKAIRafAEELieefdVRT-PGPDTPARSLSGGN 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 147 QQRIAIARAVVNKPKVLL-------LDesLSALDYkLRKQMqIELkqlqRQLGITFIFVTHDQEEALSMSDRIIVMRDGV 219
Cdd:COG3845 408 QQKVILARELSRDPKLLIaaqptrgLD--VGAIEF-IHQRL-LEL----RDAGAAVLLISEDLDEILALSDRIAVMYEGR 479
|
.
gi 1140790956 220 I 220
Cdd:COG3845 480 I 480
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
11-214 |
1.54e-17 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 80.39 E-value: 1.54e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFE--TADSGQILLAEQNVTQVpaeqrhvntv 88
Cdd:COG2401 30 VLEAFGVELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALkgTPVAGCVDVPDNQFGRE---------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 89 fqsyalfphMTVFENVAfglrmqkvPNSEIePRVMDALKMVRLE--PMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLD 166
Cdd:COG2401 100 ---------ASLIDAIG--------RKGDF-KDAVELLNAVGLSdaVLWLRRFKELSTGQKFRFRLALLLAERPKLLVID 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1140790956 167 ESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQE--EALSmSDRIIV 214
Cdd:COG2401 162 EFCSHLDRQTAKRVARNLQKLARRAGITLVVATHHYDviDDLQ-PDLLIF 210
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
24-233 |
2.21e-17 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 83.61 E-value: 2.21e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE--QRHVNTVFQSYALFPHmTVF 101
Cdd:PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDswRSRLAVVSQTPFLFSD-TVA 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 102 ENVAFGLrmqkvPN---SEIEprvmDALKMVRLEPMAQRKPH-----------QLSGGQQQRIAIARAVVNKPKVLLLDE 167
Cdd:PRK10789 407 NNIALGR-----PDatqQEIE----HVARLASVHDDILRLPQgydtevgergvMLSGGQKQRISIARALLLNAEILILDD 477
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1140790956 168 SLSALDYKLRKQMQIELKQLQRQLgiTFIFVTHdQEEALSMSDRIIVMRDGVIEQDGTPREIYEEP 233
Cdd:PRK10789 478 ALSAVDGRTEHQILHNLRQWGEGR--TVIISAH-RLSALTEASEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
37-232 |
2.50e-17 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 83.64 E-value: 2.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 37 GEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTqvP---AEQRHVNTVFQSYALFPHMTVFENVAFGLRMQKV 113
Cdd:NF033858 292 GEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVD--AgdiATRRRVGYMSQAFSLYGELTVRQNLELHARLFHL 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 114 PNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGI 193
Cdd:NF033858 370 PAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLLIELSREDGV 449
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1140790956 194 TfIFV-THDQEEALSmSDRIIVMRDG-VIEQDgTPREIYEE 232
Cdd:NF033858 450 T-IFIsTHFMNEAER-CDRISLMHAGrVLASD-TPAALVAA 487
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
27-220 |
3.82e-17 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 82.74 E-value: 3.82e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 27 IGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNV-TQVPAEQRHVNTVFQSY-----ALFPHMTV 100
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVvTRSPQDGLANGIVYISEdrkrdGLVLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 101 FENVA------FGLRMQKVPNSEIEPRVMDALKMVRLE-PMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALD 173
Cdd:PRK10762 348 KENMSltalryFSRAGGSLKHADEQQAVSDFIRLFNIKtPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1140790956 174 YKLRKqmqiELKQLQRQL---GITFIFVTHDQEEALSMSDRIIVMRDGVI 220
Cdd:PRK10762 428 VGAKK----EIYQLINQFkaeGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
27-218 |
4.84e-17 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 79.30 E-value: 4.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 27 IGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE-QRHVNTVFQSYA----LFPHMTVF 101
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEaTRSRNRYSVAYAaqkpWLLNATVE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 102 ENVAFGLRMqkvpNSEIEPRVMDALKmvrLEPMAQRKPH-----------QLSGGQQQRIAIARAVVNKPKVLLLDESLS 170
Cdd:cd03290 97 ENITFGSPF----NKQRYKAVTDACS---LQPDIDLLPFgdqteigergiNLSGGQRQRICVARALYQNTNIVFLDDPFS 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1140790956 171 ALDYKLRKQ-MQIELKQLQRQLGITFIFVTHdQEEALSMSDRIIVMRDG 218
Cdd:cd03290 170 ALDIHLSDHlMQEGILKFLQDDKRTLVLVTH-KLQYLPHADWIIAMKDG 217
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
27-228 |
5.35e-17 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 82.33 E-value: 5.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 27 IGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT--QVPAEQRHVNTVFQSYALFPHMTVFENv 104
Cdd:PRK10522 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTaeQPEDYRKLFSAVFTDFHLFDQLLGPEG- 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 105 afglrmqKVPNSEIEPRVMDALKM---VRLEPMAQRKPhQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQ 181
Cdd:PRK10522 418 -------KPANPALVEKWLERLKMahkLELEDGRISNL-KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFY 489
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1140790956 182 IELKQLQRQLGITFIFVTHDqEEALSMSDRIIVMRDGVI-EQDGTPRE 228
Cdd:PRK10522 490 QVLLPLLQEMGKTIFAISHD-DHYFIHADRLLEMRNGQLsELTGEERD 536
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
22-232 |
6.50e-17 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 78.34 E-value: 6.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFE--TADSGQILLAEQNVTQVPAEQRHVNTVFqsyalfphmt 99
Cdd:cd03217 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPkyEVTEGEILFKGEDITDLPPEERARLGIF---------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 100 vfenvafgLRMQKVPnsEIEP-RVMDALKMVRLepmaqrkphQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRK 178
Cdd:cd03217 81 --------LAFQYPP--EIPGvKNADFLRYVNE---------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALR 141
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1140790956 179 QMQIELKQLqRQLGITFIFVTHDQEEALSM-SDRIIVMRDGVIEQDGtPREIYEE 232
Cdd:cd03217 142 LVAEVINKL-REEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSG-DKELALE 194
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
20-226 |
1.15e-16 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 78.57 E-value: 1.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 20 SFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFE--TADSGQILLAEQNVTQVPAEQRH---VNTVFQSYAL 94
Cdd:COG0396 9 SVEGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPkyEVTSGSILLDGEDILELSPDERAragIFLAFQYPVE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 95 FPHMTV--FENVAFG-LRMQKVPNSEIEPRVMDALKMVRLEP-MAQRKPHQ-LSGGQQQRIAIARAVVNKPKVLLLDESL 169
Cdd:COG0396 89 IPGVSVsnFLRTALNaRRGEELSAREFLKLLKEKMKELGLDEdFLDRYVNEgFSGGEKKRNEILQMLLLEPKLAILDETD 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 170 SALDY-----------KLRKQmqielkqlqrqlGITFIFVTHdQEEALSM--SDRIIVMRDGVIEQDGTP 226
Cdd:COG0396 169 SGLDIdalrivaegvnKLRSP------------DRGILIITH-YQRILDYikPDFVHVLVDGRIVKSGGK 225
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
9-218 |
1.24e-16 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 81.20 E-value: 1.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 9 KPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT-QVP--AEQRHV 85
Cdd:PRK10762 2 QALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTfNGPksSQEAGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 86 NTVFQSYALFPHMTVFENVAFGlRMQKVPNSEIEPRVMDA-----LKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKP 160
Cdd:PRK10762 82 GIIHQELNLIPQLTIAENIFLG-REFVNRFGRIDWKKMYAeadklLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFES 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 161 KVLLLDESLSALDYKLRKQMQIELKQLQRQ-LGITFIfvTHDQEEALSMSDRIIVMRDG 218
Cdd:PRK10762 161 KVIIMDEPTDALTDTETESLFRVIRELKSQgRGIVYI--SHRLKEIFEICDDVTVFRDG 217
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
11-234 |
4.53e-16 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 77.05 E-value: 4.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFDGkEVIGNLDLNVNHGEFLTILGPSGCGKT----TVLRMIAGFETADSGQILLAEQNVTQVPAEQRHVN 86
Cdd:PRK10418 4 QIELRNIALQAAQ-PLVHGVSLTLQRGRVLALVGGSGSGKSltcaAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 87 TVFQS--YALFPHMTVFENVAFGLRMQKVPNSEiePRVMDALKMVRLEP---MAQRKPHQLSGGQQQRIAIARAVVNKPK 161
Cdd:PRK10418 83 TIMQNprSAFNPLHTMHTHARETCLALGKPADD--ATLTAALEAVGLENaarVLKLYPFEMSGGMLQRMMIALALLCEAP 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1140790956 162 VLLLDESLSALDykLRKQMQI--ELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEPK 234
Cdd:PRK10418 161 FIIADEPTTDLD--VVAQARIldLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPK 233
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
22-229 |
7.15e-16 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 76.79 E-value: 7.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETAD--------SGQILLAEQNVTQVPAEQ---RHVNTVFQ 90
Cdd:PRK13547 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGgaprgarvTGDVTLNGEPLAAIDAPRlarLRAVLPQA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 91 SYALFPhMTVFENVAFGLRMQKVPNSEIEPRVMD----ALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVN-------- 158
Cdd:PRK13547 92 AQPAFA-FSAREIVLLGRYPHARRAGALTHRDGEiawqALALAGATALVGRDVTTLSGGELARVQFARVLAQlwpphdaa 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 159 -KPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:PRK13547 171 qPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV 242
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
11-225 |
7.64e-16 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 79.29 E-value: 7.64e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFDGKE--VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNV-TQVPAEQRHVNT 87
Cdd:TIGR01257 1937 ILRLNELTKVYSGTSspAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIlTNISDVHQNMGY 2016
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 88 VFQSYALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDE 167
Cdd:TIGR01257 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDE 2096
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1140790956 168 SLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGT 225
Cdd:TIGR01257 2097 PTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGT 2153
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
29-317 |
1.80e-15 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 76.28 E-value: 1.80e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 29 NLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAeqnvTQVPAEQRHVN-----TVF-QSYALFPHMTVFE 102
Cdd:COG4586 40 DISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVL----GYVPFKRRKEFarrigVVFgQRSQLWWDLPAID 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 103 NvaFGL--RMQKVPNSEIEPRvMDAL-KMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQ 179
Cdd:COG4586 116 S--FRLlkAIYRIPDAEYKKR-LDELvELLDLGELLDTPVRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEA 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 180 MQIELKQLQRQLGITFIFVTHDQE--EALsmSDRIIVMRDGvieqdgtpREIYEEPKNLFVARFIGE--INVFEATAKSR 255
Cdd:COG4586 193 IREFLKEYNRERGTTILLTSHDMDdiEAL--CDRVIVIDHG--------RIIYDGSLEELKERFGPYktIVLELAEPVPP 262
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 256 QDEKRIVATIEGEE-SIIYH-DKDVTPGQKLQVLLR---PEDLRIEEIKeseqrgiVGHIVERTYKG 317
Cdd:COG4586 263 LELPRGGEVIEREGnRVRLEvDPRESLAEVLARLLArypVRDLTIEEPP-------IEEVIRRIYKE 322
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
8-173 |
1.85e-15 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 77.47 E-value: 1.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 8 GKPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEqnvtqvpaeqrhvnT 87
Cdd:PRK11819 321 GDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE--------------T 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 88 VFQSY------ALFPHMTVFENVAFGLRMQKVPNSEIEPRvmdalkmvrlepmA------------QRKPHQLSGGQQQR 149
Cdd:PRK11819 387 VKLAYvdqsrdALDPNKTVWEEISGGLDIIKVGNREIPSR-------------AyvgrfnfkggdqQKKVGVLSGGERNR 453
|
170 180
....*....|....*....|....
gi 1140790956 150 IAIARAVVNKPKVLLLDESLSALD 173
Cdd:PRK11819 454 LHLAKTLKQGGNVLLLDEPTNDLD 477
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
24-232 |
4.98e-15 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 76.70 E-value: 4.98e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPaeqrHVNTVFQSyalfphmTVFEN 103
Cdd:PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVP----QVSWIFNA-------TVRDN 698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 104 VAFGL-----RMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHqLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRK 178
Cdd:PLN03130 699 ILFGSpfdpeRYERAIDVTALQHDLDLLPGGDLTEIGERGVN-ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGR 777
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1140790956 179 qmQIELKQLQRQL-GITFIFVThDQEEALSMSDRIIVMRDGVIEQDGTpreiYEE 232
Cdd:PLN03130 778 --QVFDKCIKDELrGKTRVLVT-NQLHFLSQVDRIILVHEGMIKEEGT----YEE 825
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
14-218 |
1.33e-14 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 74.77 E-value: 1.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 14 LTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNV---TQVPAEQRHVNTVFQ 90
Cdd:PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIdfkSSKEALENGISMVHQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 91 SYALFPHMTVFENVAFGLRMQKVPnseieprVMDALKMVR------------LEPmaQRKPHQLSGGQQQRIAIARAVVN 158
Cdd:PRK10982 81 ELNLVLQRSVMDNMWLGRYPTKGM-------FVDQDKMYRdtkaifdeldidIDP--RAKVATLSVSQMQMIEIAKAFSY 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 159 KPKVLLLDESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDG 218
Cdd:PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRDG 210
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
26-233 |
2.42e-14 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 73.02 E-value: 2.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 26 VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFE------TADsgQILLAEQNVTQVPAEQRH------VNTVFQ--S 91
Cdd:COG4170 22 AVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITkdnwhvTAD--RFRWNGIDLLKLSPRERRkiigreIAMIFQepS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 92 YALFPHMTVFENVafglrMQKVPNSEIEPRVMDALKmvrlepmaQRK----------------------PHQLSGGQQQR 149
Cdd:COG4170 100 SCLDPSAKIGDQL-----IEAIPSWTFKGKWWQRFK--------WRKkraiellhrvgikdhkdimnsyPHELTEGECQK 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 150 IAIARAVVNKPKVLLLDESLSALDykLRKQMQIeLKQLQR--QL-GITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTP 226
Cdd:COG4170 167 VMIAMAIANQPRLLIADEPTNAME--STTQAQI-FRLLARlnQLqGTSILLISHDLESISQWADTITVLYCGQTVESGPT 243
|
....*..
gi 1140790956 227 REIYEEP 233
Cdd:COG4170 244 EQILKSP 250
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
5-220 |
3.09e-14 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 73.93 E-value: 3.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 5 KSVGKPVVQLTGISKsfdgkEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAEQR- 83
Cdd:PRK15439 262 QAAGAPVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRl 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 HVNTVF-----QSYALFPHMTVFENVA------FGLRMQKVPNSEIEPRVMDAL--KMVRLEPMAQRkphqLSGGQQQRI 150
Cdd:PRK15439 337 ARGLVYlpedrQSSGLYLDAPLAWNVCalthnrRGFWIKPARENAVLERYRRALniKFNHAEQAART----LSGGNQQKV 412
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 151 AIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVI 220
Cdd:PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
9-225 |
3.56e-14 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 71.60 E-value: 3.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 9 KPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFE--TADSGQILLAEQNVTQVPAEQRHVN 86
Cdd:CHL00131 5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPayKILEGDILFKGESILDLEPEERAHL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 87 TVFQSYALFPHMTVFENVAFgLRM-----QKVPN-SEIEPR-----VMDALKMVRLEP-MAQRKPHQ-LSGGQQQRIAIA 153
Cdd:CHL00131 85 GIFLAFQYPIEIPGVSNADF-LRLaynskRKFQGlPELDPLefleiINEKLKLVGMDPsFLSRNVNEgFSGGEKKRNEIL 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 154 RAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEealsMSDRII-----VMRDGVIEQDGT 225
Cdd:CHL00131 164 QMALLDSELAILDETDSGLDIDALKIIAEGINKLMTS-ENSIILITHYQR----LLDYIKpdyvhVMQNGKIIKTGD 235
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
8-231 |
3.71e-14 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 74.24 E-value: 3.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 8 GKPVVQLTGISKSFDGK---EVIGNLDLNVNHGEFLTILGPSGCGKTTVLR-MIAGFETADSGQILLaEQNVTQVPaeqr 83
Cdd:PLN03232 611 GAPAISIKNGYFSWDSKtskPTLSDINLEIPVGSLVAIVGGTGEGKTSLISaMLGELSHAETSSVVI-RGSVAYVP---- 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 HVNTVFQSyalfphmTVFENVAFGlrmqkvpnSEIEP----RVMDALKMVR-LEPMAQRKPHQL-------SGGQQQRIA 151
Cdd:PLN03232 686 QVSWIFNA-------TVRENILFG--------SDFESerywRAIDVTALQHdLDLLPGRDLTEIgergvniSGGQKQRVS 750
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 152 IARAVVNKPKVLLLDESLSALDYKLRKQ-----MQIELKqlqrqlGITFIFVThDQEEALSMSDRIIVMRDGVIEQDGTP 226
Cdd:PLN03232 751 MARAVYSNSDIYIFDDPLSALDAHVAHQvfdscMKDELK------GKTRVLVT-NQLHFLPLMDRIILVSEGMIKEEGTF 823
|
....*
gi 1140790956 227 REIYE 231
Cdd:PLN03232 824 AELSK 828
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
17-218 |
3.91e-14 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 70.37 E-value: 3.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 17 ISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGfETADSGQIllaEQNVT------QVPAEQRHVNTVF- 89
Cdd:cd03233 13 TGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN-RTEGNVSV---EGDIHyngipyKEFAEKYPGEIIYv 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 90 -QSYALFPHMTVFENVAFGLRMQkvpNSEieprvmdalkMVRlepmaqrkphQLSGGQQQRIAIARAVVNKPKVLLLDES 168
Cdd:cd03233 89 sEEDVHFPTLTVRETLDFALRCK---GNE----------FVR----------GISGGERKRVSIAEALVSRASVLCWDNS 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 169 LSALDYKLRKQMQIELKQLQRQLGITfIFVTHDQ--EEALSMSDRIIVMRDG 218
Cdd:cd03233 146 TRGLDSSTALEILKCIRTMADVLKTT-TFVSLYQasDEIYDLFDKVLVLYEG 196
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
22-232 |
4.16e-14 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 73.60 E-value: 4.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVP--AEQRHVNTVFQSYALFPHmT 99
Cdd:PRK10790 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLShsVLRQGVAMVQQDPVVLAD-T 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 100 VFENVAFGLRMQkvpnseiEPRVMDALKMVRLEPMAQRKP-----------HQLSGGQQQRIAIARAVVNKPKVLLLDES 168
Cdd:PRK10790 431 FLANVTLGRDIS-------EEQVWQALETVQLAELARSLPdglytplgeqgNNLSVGQKQLLALARVLVQTPQILILDEA 503
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 169 LSALDYKLRKQMQIELKQLQRQlgITFIFVTHdqeeALSM---SDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:PRK10790 504 TANIDSGTEQAIQQALAAVREH--TTLVVIAH----RLSTiveADTILVLHRGQAVEQGTHQQLLAA 564
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
64-229 |
5.84e-14 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 73.52 E-value: 5.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 64 DSGQILLAEQNVTQVPAEQ-RHVNTVFQSYALFPHMTVFENVAFGLRmqkvpNSEIEPrVMDALKMVRLEPMAQRKPHQ- 141
Cdd:PTZ00265 1275 NSGKILLDGVDICDYNLKDlRNLFSIVSQEPMLFNMSIYENIKFGKE-----DATRED-VKRACKFAAIDEFIESLPNKy 1348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 142 ----------LSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHdQEEALSMSDR 211
Cdd:PTZ00265 1349 dtnvgpygksLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH-RIASIKRSDK 1427
|
170 180
....*....|....*....|...
gi 1140790956 212 IIVM----RDG-VIEQDGTPREI 229
Cdd:PTZ00265 1428 IVVFnnpdRTGsFVQAHGTHEEL 1450
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
14-210 |
6.05e-14 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 69.98 E-value: 6.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 14 LTGISKSFDGKE--VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQ-VPAEQRHVNTVFQ 90
Cdd:PRK13540 2 LDVIELDFDYHDqpLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKdLCTYQKQLCFVGH 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 91 SYALFPHMTVFENVAFGLRMQKVpNSEIEprvmDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLS 170
Cdd:PRK13540 82 RSGINPYLTLRENCLYDIHFSPG-AVGIT----ELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLV 156
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1140790956 171 ALDYKLRKQMQIELKQLQRQLGItfIFVTHDQEEALSMSD 210
Cdd:PRK13540 157 ALDELSLLTIITKIQEHRAKGGA--VLLTSHQDLPLNKAD 194
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
25-226 |
7.08e-14 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 69.75 E-value: 7.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 25 EVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE--QRHVNTVFQSYALFPHmTVFE 102
Cdd:cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEdlRSSLTIIPQDPTLFSG-TIRS 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 103 NVafglrmqKVPNSEIEPRVMDALKMvrlepmaQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDY----KLRK 178
Cdd:cd03369 101 NL-------DPFDEYSDEEIYGALRV-------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYatdaLIQK 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1140790956 179 QMQIELKqlqrqlGITFIFVTHdQEEALSMSDRIIVMRDGVIEQDGTP 226
Cdd:cd03369 167 TIREEFT------NSTILTIAH-RLRTIIDYDKILVMDAGEVKEYDHP 207
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
36-218 |
8.37e-14 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 68.17 E-value: 8.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 36 HGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLaeqnvtqvpaeqrhVNTvfqsyalfphmtvfenvafglrmqkvpn 115
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY--------------IDG---------------------------- 38
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 116 seiePRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIE-----LKQLQRQ 190
Cdd:smart00382 39 ----EDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLeelrlLLLLKSE 114
|
170 180 190
....*....|....*....|....*....|...
gi 1140790956 191 LGITFIFVTHDQEEALSM-----SDRIIVMRDG 218
Cdd:smart00382 115 KNLTVILTTNDEKDLGPAllrrrFDRRIVLLLI 147
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
23-200 |
1.03e-13 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 72.47 E-value: 1.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 23 GKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILL-AEQNVTQVPAEQRHVNTVFQSYALFPhMTVF 101
Cdd:TIGR00954 464 GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKpAKGKLFYVPQRPYMTLGTLRDQIIYP-DSSE 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 102 EnvafgLRMQKVPNSEIEprvmDALKMVRLEPMAQRK---------PHQLSGGQQQRIAIARAVVNKPKVLLLDESLSAL 172
Cdd:TIGR00954 543 D-----MKRRGLSDKDLE----QILDNVQLTHILEREggwsavqdwMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAV 613
|
170 180
....*....|....*....|....*...
gi 1140790956 173 DYklrkQMQIELKQLQRQLGITFIFVTH 200
Cdd:TIGR00954 614 SV----DVEGYMYRLCREFGITLFSVSH 637
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
2-249 |
1.13e-13 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 72.22 E-value: 1.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 2 NAKKSVGKPVvQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADS--GQILLAEQNVTQvp 79
Cdd:PLN03211 60 NIKRILGHKP-KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRKPTK-- 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 80 AEQRHVNTVFQSYALFPHMTVFENVAFG--LRMQKVPNSEIEPRVMDA----LKMVRLEP--MAQRKPHQLSGGQQQRIA 151
Cdd:PLN03211 137 QILKRTGFVTQDDILYPHLTVRETLVFCslLRLPKSLTKQEKILVAESviseLGLTKCENtiIGNSFIRGISGGERKRVS 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 152 IARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQrQLGITFIFVTHDQeealsmSDRIIVMRDGVIeqdgtpreIYE 231
Cdd:PLN03211 217 IAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLA-QKGKTIVTSMHQP------SSRVYQMFDSVL--------VLS 281
|
250
....*....|....*...
gi 1140790956 232 EPKNLFVARFIGEINVFE 249
Cdd:PLN03211 282 EGRCLFFGKGSDAMAYFE 299
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
30-229 |
1.58e-13 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 72.29 E-value: 1.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 30 LDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLaEQNVTQVPAEqrhvntvfqsyALFPHMTVFENVAFGLR 109
Cdd:TIGR00957 657 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHM-KGSVAYVPQQ-----------AWIQNDSLRENILFGKA 724
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 110 MQkvpnseiEPR---VMDA---LKMVRLEPMAQR-----KPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRK 178
Cdd:TIGR00957 725 LN-------EKYyqqVLEAcalLPDLEILPSGDRteigeKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 797
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 179 QMQIELKQLQRQL-GITFIFVTHDQeEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:TIGR00957 798 HIFEHVIGPEGVLkNKTRILVTHGI-SYLPQVDVIIVMSGGKISEMGSYQEL 848
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
13-227 |
1.67e-13 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 71.75 E-value: 1.67e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 13 QLTGISKSFDGKE-----VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLaeqNVTQVPAEQR---- 83
Cdd:COG4615 329 ELRGVTYRYPGEDgdegfTLGPIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILL---DGQPVTADNReayr 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 84 -HVNTVFQSYALFPHMtvfenvaFGlrmqkvPNSEIEPRVMDALkMVRLEpMaQRKPH---------QLSGGQQQRIAIA 153
Cdd:COG4615 406 qLFSAVFSDFHLFDRL-------LG------LDGEADPARAREL-LERLE-L-DHKVSvedgrfsttDLSQGQRKRLALL 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 154 RAVV-NKPkVLLLDEslSALD---------YKlrkqmqiELKQLQRQLGITFIFVTHDqEEALSMSDRIIVMRDGVIEQD 223
Cdd:COG4615 470 VALLeDRP-ILVFDE--WAADqdpefrrvfYT-------ELLPELKARGKTVIAISHD-DRYFDLADRVLKMDYGKLVEL 538
|
....
gi 1140790956 224 GTPR 227
Cdd:COG4615 539 TGPA 542
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
24-224 |
2.98e-13 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 71.35 E-value: 2.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAG-FETAdSGQILlAEQNVTQVPAEQRHVNTvfqsyalfphmTVFE 102
Cdd:PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSqFEIS-EGRVW-AERSIAYVPQQAWIMNA-----------TVRG 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 103 NVAFGlrmqkvpNSEIEPRVMDALKMVRLEP-MAQ----------RKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSA 171
Cdd:PTZ00243 740 NILFF-------DEEDAARLADAVRVSQLEAdLAQlgggleteigEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSA 812
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 172 LDYKLRKQMQIELKqLQRQLGITFIFVTHdQEEALSMSDRIIVMRDGVIEQDG 224
Cdd:PTZ00243 813 LDAHVGERVVEECF-LGALAGKTRVLATH-QVHVVPRADYVVALGDGRVEFSG 863
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
6-214 |
3.21e-13 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 70.58 E-value: 3.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 6 SVGKPVVQLTGISKSFDGKEvignLDLN---VNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQIllaEQNVT-----Q 77
Cdd:COG1245 336 KEEETLVEYPDLTKSYGGFS----LEVEggeIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEV---DEDLKisykpQ 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 78 -VPAEQrhvntvfqsyalfpHMTVFENvafgLRM---QKVPNSEIEPRVMDALkmvRLEPMAQRKPHQLSGGQQQRIAIA 153
Cdd:COG1245 409 yISPDY--------------DGTVEEF----LRSantDDFGSSYYKTEIIKPL---GLEKLLDKNVKDLSGGELQRVAIA 467
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1140790956 154 RAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDqeeaLSM----SDRIIV 214
Cdd:COG1245 468 ACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAENRGKTAMVVDHD----IYLidyiSDRLMV 528
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
33-214 |
3.80e-13 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 68.59 E-value: 3.80e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 33 NVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPaeqRHVNTVFQsyalfphMTVFEnvafgLRMQK 112
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKP---QYIKADYE-------GTVRD-----LLSSI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 113 VPNSEIEP----RVMDALKmvrLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQ 188
Cdd:cd03237 86 TKDFYTHPyfktEIAKPLQ---IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFA 162
|
170 180
....*....|....*....|....*.
gi 1140790956 189 RQLGITFIFVTHDQEEALSMSDRIIV 214
Cdd:cd03237 163 ENNEKTAFVVEHDIIMIDYLADRLIV 188
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
22-276 |
4.97e-13 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 68.37 E-value: 4.97e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVpAEQRHVNTVFQSYAL---FPhm 98
Cdd:PRK15056 18 NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA-LQKNLVAYVPQSEEVdwsFP-- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 99 TVFENVAFGLR-----MQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALD 173
Cdd:PRK15056 95 VLVEDVVMMGRyghmgWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVD 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 174 YKLRKQMQIELKQLqRQLGITFIFVTHDQEEALSMSDrIIVMRDGVIEQDGtPREIYEEPKNLFVArFIGEInvfeatak 253
Cdd:PRK15056 175 VKTEARIISLLREL-RDEGKTMLVSTHNLGSVTEFCD-YTVMVKGTVLASG-PTETTFTAENLELA-FSGVL-------- 242
|
250 260
....*....|....*....|...
gi 1140790956 254 srqdekRIVATIEGEESIIYHDK 276
Cdd:PRK15056 243 ------RHVALNGSEESIITDDE 259
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
12-213 |
1.07e-12 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 69.21 E-value: 1.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLaEQNVTQVPAEQ---RHVNTv 88
Cdd:PRK11147 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY-EQDLIVARLQQdppRNVEG- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 89 fqsyalfphmTVFENVAFGL---------------------------RMQKVPNS-------EIEPRVMDALKMVRLEPM 134
Cdd:PRK11147 82 ----------TVYDFVAEGIeeqaeylkryhdishlvetdpseknlnELAKLQEQldhhnlwQLENRINEVLAQLGLDPD 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 135 AqrKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKlrkqmQIE-LKQLQRQLGITFIFVTHDQEEALSMSDRII 213
Cdd:PRK11147 152 A--ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIE-----TIEwLEGFLKTFQGSIIFISHDRSFIRNMATRIV 224
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
4-214 |
1.20e-12 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 69.07 E-value: 1.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 4 KKSVGKPVVQLTGISKSFdgkeviGNLDLNV-----NHGEFLTILGPSGCGKTTVLRMIAGFETADSGQIlLAEQNVTQV 78
Cdd:PRK13409 333 DESERETLVEYPDLTKKL------GDFSLEVeggeiYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV-DPELKISYK 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 79 PaeqrhvntvfQSYALFPHMTVFENvafgLRMQKVP--NSEIEPRVMDALkmvRLEPMAQRKPHQLSGGQQQRIAIARAV 156
Cdd:PRK13409 406 P----------QYIKPDYDGTVEDL----LRSITDDlgSSYYKSEIIKPL---QLERLLDKNVKDLSGGELQRVAIAACL 468
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 157 VNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDqeeaLSM----SDRIIV 214
Cdd:PRK13409 469 SRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD----IYMidyiSDRLMV 526
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
42-178 |
1.60e-12 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 65.66 E-value: 1.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 42 ILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPaeQRHVNTVFQSYALFPHMTVFENVAFglrMQKVPNSeiEPR 121
Cdd:PRK13541 31 IKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA--KPYCTYIGHNLGLKLEMTVFENLKF---WSEIYNS--AET 103
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 122 VMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRK 178
Cdd:PRK13541 104 LYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRD 160
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
11-201 |
5.16e-12 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 66.88 E-value: 5.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFD-GKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQIllaeqnvtqVPAEQRHVNTVF 89
Cdd:TIGR03719 4 IYTMNRVSKVVPpKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEA---------RPQPGIKVGYLP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 90 QSYALFPHMTVFENVAFGL--------RMQKVPNSEIEPRV-MDAL--KMVRLEPM------------------AQRKP- 139
Cdd:TIGR03719 75 QEPQLDPTKTVRENVEEGVaeikdaldRFNEISAKYAEPDAdFDKLaaEQAELQEIidaadawdldsqleiamdALRCPp 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 140 -----HQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQielKQLQRQLGiTFIFVTHD 201
Cdd:TIGR03719 155 wdadvTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLE---RHLQEYPG-TVVAVTHD 217
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
23-223 |
9.02e-12 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 66.11 E-value: 9.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 23 GKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAG-FETADSGQILLAEQNVT-------------QVPAEQRHvntv 88
Cdd:PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGaYPGRWEGEIFIDGKPVKirnpqqaiaqgiaMVPEDRKR---- 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 89 fqsYALFPHMTVFENV--------AFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKphQLSGGQQQRIAIARAVVNKP 160
Cdd:PRK13549 350 ---DGIVPVMGVGKNItlaaldrfTGGSRIDDAAELKTILESIQRLKVKTASPELAIA--RLSGGNQQKAVLAKCLLLNP 424
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 161 KVLLLDESLSALD-------YKLrkqmqieLKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQD 223
Cdd:PRK13549 425 KILILDEPTRGIDvgakyeiYKL-------INQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHEGKLKGD 486
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
8-203 |
1.72e-11 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 65.36 E-value: 1.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 8 GKPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQIllaeqnvtqvpaeqrHVNT 87
Cdd:PRK11147 316 GKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI---------------HCGT 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 88 -----VFQSY--ALFPHMTVFENVAFGlrMQKVPNSEIEPRVMDALKMVRLEPMAQRKP-HQLSGGQQQRIAIARAVVNK 159
Cdd:PRK11147 381 klevaYFDQHraELDPEKTVMDNLAEG--KQEVMVNGRPRHVLGYLQDFLFHPKRAMTPvKALSGGERNRLLLARLFLKP 458
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1140790956 160 PKVLLLDESLSALDyklrkqmqIELKQLQRQL-----GiTFIFVTHDQE 203
Cdd:PRK11147 459 SNLLILDEPTNDLD--------VETLELLEELldsyqG-TVLLVSHDRQ 498
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
16-218 |
2.23e-11 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 64.81 E-value: 2.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 16 GISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADS--GQILLAEQ-----NVTQvpAEQRHVNTV 88
Cdd:NF040905 6 GITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPHGSyeGEILFDGEvcrfkDIRD--SEALGIVII 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 89 FQSYALFPHMTVFENVAFGLRMQK--VPN-SEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLL 165
Cdd:NF040905 84 HQELALIPYLSIAENIFLGNERAKrgVIDwNETNRRARELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALSKDVKLLIL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 166 DESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDG 218
Cdd:NF040905 164 DEPTAALNEEDSAALLDLLLELKAQ-GITSIIISHKLNEIRRVADSITVLRDG 215
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
18-218 |
2.53e-11 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 65.52 E-value: 2.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 18 SKSFDgkeVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIA----GFETADSGQI----LLAEQNVTQVPAEqrhVNTVF 89
Cdd:TIGR00956 71 TKTFD---ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAsntdGFHIGVEGVItydgITPEEIKKHYRGD---VVYNA 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 90 QSYALFPHMTVFENVAFGLRMQKVPNseiepRVMDALKMVRLEPMAQ---------------------RKphqLSGGQQQ 148
Cdd:TIGR00956 145 ETDVHFPHLTVGETLDFAARCKTPQN-----RPDGVSREEYAKHIADvymatyglshtrntkvgndfvRG---VSGGERK 216
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 149 RIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGIT-FIFVTHDQEEALSMSDRIIVMRDG 218
Cdd:TIGR00956 217 RVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTpLVAIYQCSQDAYELFDKVIVLYEG 287
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
23-218 |
3.30e-11 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 63.34 E-value: 3.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 23 GKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQIllaeqnvtqvpaeqRH---VNTVFQSYALFPHmT 99
Cdd:cd03291 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI--------------KHsgrISFSSQFSWIMPG-T 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 100 VFENVAFGLrmqkvpnSEIEPRVMDALKMVRLEPMAQRKPHQ-----------LSGGQQQRIAIARAVVNKPKVLLLDES 168
Cdd:cd03291 114 IKENIIFGV-------SYDEYRYKSVVKACQLEEDITKFPEKdntvlgeggitLSGGQRARISLARAVYKDADLYLLDSP 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1140790956 169 LSALDYKLRKQMqIELKQLQRQLGITFIFVTHDQEEaLSMSDRIIVMRDG 218
Cdd:cd03291 187 FGYLDVFTEKEI-FESCVCKLMANKTRILVTSKMEH-LKKADKILILHEG 234
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
32-220 |
5.34e-11 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 63.78 E-value: 5.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 32 LNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT-QVPAEQRHVNTVF-----QSYALFPHMTVFENVA 105
Cdd:PRK11288 274 FSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDiRSPRDAIRAGIMLcpedrKAEGIIPVHSVADNIN 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 106 FGLRMQKVPNSE-IEPRVMDALKMVRLEPMAQRKPH------QLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRK 178
Cdd:PRK11288 354 ISARRHHLRAGClINNRWEAENADRFIRSLNIKTPSreqlimNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKH 433
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1140790956 179 QMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVI 220
Cdd:PRK11288 434 EIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRI 474
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
8-205 |
7.31e-11 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 63.50 E-value: 7.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 8 GKPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIagfeTADSGQ------ILLAEQNVTqvpAE 81
Cdd:PRK10938 257 NEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLI----TGDHPQgysndlTLFGRRRGS---GE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 82 -----QRHVNTVfqSYALfpHM-----TVFENV-------AFGLrMQKVPNSEiEPRVMDALKMVRLEPMAQRKP-HQLS 143
Cdd:PRK10938 330 tiwdiKKHIGYV--SSSL--HLdyrvsTSVRNVilsgffdSIGI-YQAVSDRQ-QKLAQQWLDILGIDKRTADAPfHSLS 403
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 144 GGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEA 205
Cdd:PRK10938 404 WGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA 465
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
20-229 |
2.47e-10 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 62.24 E-value: 2.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 20 SFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAG-FETAD-----SGQILLAEQNVTQVPAeqrhvntvfqsya 93
Cdd:TIGR01271 435 SLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGeLEPSEgkikhSGRISFSPQTSWIMPG------------- 501
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 94 lfphmTVFENVAFGLrmqkvpnSEIEPRVMDALKMVRLEPMAQRKPHQ-----------LSGGQQQRIAIARAVVNKPKV 162
Cdd:TIGR01271 502 -----TIKDNIIFGL-------SYDEYRYTSVIKACQLEEDIALFPEKdktvlgeggitLSGGQRARISLARAVYKDADL 569
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 163 LLLDESLSALDYKLRKQMqIELKQLQRQLGITFIFVThDQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:TIGR01271 570 YLLDSPFTHLDVVTEKEI-FESCLCKLMSNKTRILVT-SKLEHLKKADKILLLHEGVCYFYGTFSEL 634
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
8-229 |
5.98e-10 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 60.13 E-value: 5.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 8 GKPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVlRMIAGFETADSGQillAEQNVTQVPAEQRHVNT 87
Cdd:NF000106 10 ARNAVEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RG-ALPAHV*GPDAGR---RPWRF*TWCANRRALRR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 88 VFQSY-----ALFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKV 162
Cdd:NF000106 86 TIG*Hrpvr*GRRESFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAV 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1140790956 163 LLLDESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:NF000106 166 LYLDEPTTGLDPRTRNEVWDEVRSMVRD-GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
27-223 |
6.51e-10 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 60.22 E-value: 6.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 27 IGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAG-FETADSGQILL-------------AEQNVTQVPAEQRHvntvfqsY 92
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGaYPGKFEGNVFIngkpvdirnpaqaIRAGIAMVPEDRKR-------H 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 93 ALFPHMTVFENV------AFGLRMQKvpNSEIEPRVMD-ALKMVRLEPMAQRKP-HQLSGGQQQRIAIARAVVNKPKVLL 164
Cdd:TIGR02633 349 GIVPILGVGKNItlsvlkSFCFKMRI--DAAAELQIIGsAIQRLKVKTASPFLPiGRLSGGNQQKAVLAKMLLTNPRVLI 426
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 165 LDESLSALDYKLRKQMQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQD 223
Cdd:TIGR02633 427 LDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKLKGD 484
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
25-200 |
6.55e-10 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 60.81 E-value: 6.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 25 EVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAE-QNVTQVPAE--QRHVNTVFQSYALFPHmTVF 101
Cdd:PTZ00265 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDsHNLKDINLKwwRSKIGVVSQDPLLFSN-SIK 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 102 ENVAFGL---------------------------------------------------RMQKVPNSEIEPRVMDALKMV- 129
Cdd:PTZ00265 478 NNIKYSLyslkdlealsnyynedgndsqenknkrnscrakcagdlndmsnttdsneliEMRKNYQTIKDSEVVDVSKKVl 557
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 130 ----------RLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVT 199
Cdd:PTZ00265 558 ihdfvsalpdKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIA 637
|
.
gi 1140790956 200 H 200
Cdd:PTZ00265 638 H 638
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
20-202 |
7.94e-10 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 58.65 E-value: 7.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 20 SFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFE--TADSGQILLAEQNVTQVPAEQRHVNTVFQSyalFPH 97
Cdd:PRK09580 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREdyEVTGGTVEFKGKDLLELSPEDRAGEGIFMA---FQY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 98 MTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQL---------------SGGQQQRIAIARAVVNKPKV 162
Cdd:PRK09580 87 PVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLkmpedlltrsvnvgfSGGEKKRNDILQMAVLEPEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1140790956 163 LLLDESLSALDYKLRKQMQIELKQLqRQLGITFIFVTHDQ 202
Cdd:PRK09580 167 CILDESDSGLDIDALKIVADGVNSL-RDGKRSFIIVTHYQ 205
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
11-232 |
9.14e-10 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 60.14 E-value: 9.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVtqvpAEQRHVNTVFQ 90
Cdd:NF033858 1 VARLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDM----ADARHRRAVCP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 91 SYA---------LFPHMTVFENVAFGLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPK 161
Cdd:NF033858 77 RIAympqglgknLYPTLSVFENLDFFGRLFGQDAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPD 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 162 VLLLDESLSALDYKLRKQMQ--IELKQLQRQlGITFIFVTHDQEEALSMsDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:NF033858 157 LLILDEPTTGVDPLSRRQFWelIDRIRAERP-GMSVLVATAYMEEAERF-DWLVAMDAGRVLATGTPAELLAR 227
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
8-234 |
1.17e-09 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 59.80 E-value: 1.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 8 GKPVVQLTGISkSFDGKEViGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVT---QVPAEQRH 84
Cdd:PRK09700 262 HETVFEVRNVT-SRDRKKV-RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISprsPLDAVKKG 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 85 VNTVFQSY---ALFPHMTVFENVAFGLRMQK--------VPNSEIEPRVMD------ALKMVRLEpmaqRKPHQLSGGQQ 147
Cdd:PRK09700 340 MAYITESRrdnGFFPNFSIAQNMAISRSLKDggykgamgLFHEVDEQRTAEnqrellALKCHSVN----QNITELSGGNQ 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 148 QRIAIARAVVNKPKVLLLDESLSALDYKLRKqmqiELKQLQRQL---GITFIFVTHDQEEALSMSDRIIVMRDGVIEQDG 224
Cdd:PRK09700 416 QKVLISKWLCCCPEVIIFDEPTRGIDVGAKA----EIYKVMRQLaddGKVILMVSSELPEIITVCDRIAVFCEGRLTQIL 491
|
250
....*....|
gi 1140790956 225 TPREIYEEPK 234
Cdd:PRK09700 492 TNRDDMSEEE 501
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
26-232 |
2.99e-09 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 58.80 E-value: 2.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 26 VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPAE--QRHVNTVFQSYALFphmtvfen 103
Cdd:TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHdlRFKITIIPQDPVLF-------- 1372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 104 vAFGLRMQKVPNSEI-EPRVMDALKMVRLEPMAQRKP----HQ-------LSGGQQQRIAIARAVVNKPKVLLLDESLSA 171
Cdd:TIGR00957 1373 -SGSLRMNLDPFSQYsDEEVWWALELAHLKTFVSALPdkldHEcaeggenLSVGQRQLVCLARALLRKTKILVLDEATAA 1451
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140790956 172 LDYKLRKQMQIELK-QLQrqlGITFIFVTHDQEEALSMSdRIIVMRDGVIEQDGTPREIYEE 232
Cdd:TIGR00957 1452 VDLETDNLIQSTIRtQFE---DCTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFGAPSNLLQQ 1509
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
11-201 |
1.44e-08 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 56.28 E-value: 1.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 11 VVQLTGISKSFDG-KEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAE-QNVTQVPAEQRhvntv 88
Cdd:PRK11819 6 IYTMNRVSKVVPPkKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPgIKVGYLPQEPQ----- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 89 fqsyaLFPHMTVFENVAFGL-----------------------------RMQKVPN-----------SEIEpRVMDALkm 128
Cdd:PRK11819 81 -----LDPEKTVRENVEEGVaevkaaldrfneiyaayaepdadfdalaaEQGELQEiidaadawdldSQLE-IAMDAL-- 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1140790956 129 vRLEPmAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDyklrkqmqIE----LKQ-LQRQLGiTFIFVTHD 201
Cdd:PRK11819 153 -RCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD--------AEsvawLEQfLHDYPG-TVVAVTHD 219
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
26-237 |
1.50e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 56.52 E-value: 1.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 26 VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQ--VPAEQRHVNTVFQSYALFPHmtvfeN 103
Cdd:PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKfgLTDLRRVLSIIPQSPVLFSG-----T 1325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 104 VAFGLRmqkvPNSE-IEPRVMDALKMVRLEPMAQRKPHQL-----------SGGQQQRIAIARAVVNKPKVLLLDESLSA 171
Cdd:PLN03232 1326 VRFNID----PFSEhNDADLWEALERAHIKDVIDRNPFGLdaevseggenfSVGQRQLLSLARALLRRSKILVLDEATAS 1401
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1140790956 172 LDYKLRKQMQIELKQLQRQlgITFIFVTHDQEEALSmSDRIIVMRDGVIEQDGTPREIYEEPKNLF 237
Cdd:PLN03232 1402 VDVRTDSLIQRTIREEFKS--CTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRDTSAF 1464
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
8-173 |
1.80e-08 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 56.02 E-value: 1.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 8 GKPVVQLTGISKSFDGKEVI-GNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQnVTQVPAEQRHVN 86
Cdd:PLN03073 505 GPPIISFSDASFGYPGGPLLfKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-VRMAVFSQHHVD 583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 87 TV-FQSYALFPHMTVFEnvafGLRMQKVPNSEIEPRVMDALKmvrLEPMaqrkpHQLSGGQQQRIAIARAVVNKPKVLLL 165
Cdd:PLN03073 584 GLdLSSNPLLYMMRCFP----GVPEQKLRAHLGSFGVTGNLA---LQPM-----YTLSGGQKSRVAFAKITFKKPHILLL 651
|
....*...
gi 1140790956 166 DESLSALD 173
Cdd:PLN03073 652 DEPSNHLD 659
|
|
| TOBE_2 |
pfam08402 |
TOBE domain; The TOBE domain (Transport-associated OB) always occurs as a dimer as the ... |
286-365 |
2.16e-08 |
|
TOBE domain; The TOBE domain (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum and sulphate. Found in ABC transporters immediately after the ATPase domain. In this family a strong RPE motif is found at the presumed N-terminus of the domain.
Pssm-ID: 462465 [Multi-domain] Cd Length: 73 Bit Score: 50.70 E-value: 2.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 286 VLLRPEDLRIEEIkeseQRGIVGHIVERTYKGMTLDSVVELESGMRVMVSEFFNEDDPdvdHSLGQKVAVTWVESWEVVL 365
Cdd:pfam08402 1 LAIRPEKIRLAAA----ANGLSGTVTDVEYLGDHTRYHVELAGGEELVVRVPNAHARP---PAPGDRVGLGWDPEDAHVL 73
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
37-201 |
4.47e-08 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 53.52 E-value: 4.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 37 GEFLTILGPSGCGKTTVLRMIAG--------FETADSGQILLAE------QN-VTQVPAEQRHVNTVFQSYALFPHmTVF 101
Cdd:cd03236 26 GQVLGLVGPNGIGKSTALKILAGklkpnlgkFDDPPDWDEILDEfrgselQNyFTKLLEGDVKVIVKPQYVDLIPK-AVK 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 102 ENVafGLRMQKVPNSEIEPRVMDALKmvrLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQ 181
Cdd:cd03236 105 GKV--GELLKKKDERGKLDELVDQLE---LRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAA 179
|
170 180
....*....|....*....|
gi 1140790956 182 IELKQLQRQlGITFIFVTHD 201
Cdd:cd03236 180 RLIRELAED-DNYVLVVEHD 198
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
27-218 |
2.44e-07 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 52.42 E-value: 2.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 27 IGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPA------------EQRHVNTVFQSY-- 92
Cdd:PRK10982 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNAneainhgfalvtEERRSTGIYAYLdi 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 93 ---ALFPHMTVFENvAFGLRMQKVPNSEIEpRVMDALKMVrlEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESL 169
Cdd:PRK10982 344 gfnSLISNIRNYKN-KVGLLDNSRMKSDTQ-WVIDSMRVK--TPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT 419
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1140790956 170 SALDYKLRKQM-QIELKQLQRQLGItfIFVTHDQEEALSMSDRIIVMRDG 218
Cdd:PRK10982 420 RGIDVGAKFEIyQLIAELAKKDKGI--IIISSEMPELLGITDRILVMSNG 467
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
32-233 |
4.25e-07 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 51.34 E-value: 4.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 32 LNVNHGEFLTILGPSGCGKTTVLRMIAGFE------TADsgQILLAEQNVTQVPAEQRH------VNTVFQ--SYALFPH 97
Cdd:PRK15093 28 MTLTEGEIRGLVGESGSGKSLIAKAICGVTkdnwrvTAD--RMRFDDIDLLRLSPRERRklvghnVSMIFQepQSCLDPS 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 98 mtvfENVAFGLrMQKVPNSEIE-----------PRVMDALKMVRLE---PMAQRKPHQLSGGQQQRIAIARAVVNKPKVL 163
Cdd:PRK15093 106 ----ERVGRQL-MQNIPGWTYKgrwwqrfgwrkRRAIELLHRVGIKdhkDAMRSFPYELTEGECQKVMIAIALANQPRLL 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 164 LLDESLSALDYKLRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEEP 233
Cdd:PRK15093 181 IADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTP 250
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
34-214 |
1.66e-06 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 47.95 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 34 VNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVPaeqrhvntvfqsyalfphmtvfenvafglrmQKV 113
Cdd:cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKP-------------------------------QYI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 114 pnseieprvmdalkmvrlepmaqrkphQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRQLGI 193
Cdd:cd03222 71 ---------------------------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKK 123
|
170 180
....*....|....*....|.
gi 1140790956 194 TFIFVTHDQEEALSMSDRIIV 214
Cdd:cd03222 124 TALVVEHDLAVLDYLSDRIHV 144
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
37-173 |
1.66e-06 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 48.01 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 37 GEFLTILGPSGCGKTTVLRMIAGFETAD--SGQILLAEQNVTqvPAEQRHVNTVFQSYALFPHMTVFENVAFG--LRmqk 112
Cdd:cd03232 33 GTLTALMGESGAGKTTLLDVLAGRKTAGviTGEILINGRPLD--KNFQRSTGYVEQQDVHSPNLTVREALRFSalLR--- 107
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 113 vpnseieprvmdalkmvrlepmaqrkphQLSGGQQQRIAIARAVVNKPKVLLLDESLSALD 173
Cdd:cd03232 108 ----------------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLD 140
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
3-221 |
2.96e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 49.01 E-value: 2.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 3 AKKSVGKPVVQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAeQNVTQVPAEQ 82
Cdd:PRK10636 304 APESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA-KGIKLGYFAQ 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 83 RHVNTVFQSYALFPHMTvfenvafglrmqKVPNSEIEPRVMDALKMVRLEPMAQRKP-HQLSGGQQQRIAIARAVVNKPK 161
Cdd:PRK10636 383 HQLEFLRADESPLQHLA------------RLAPQELEQKLRDYLGGFGFQGDKVTEEtRRFSGGEKARLVLALIVWQRPN 450
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 162 VLLLDESLSALDYKLRKQMQIELKQLQRQLgitfIFVTHDQEEALSMSDRIIVMRDGVIE 221
Cdd:PRK10636 451 LLLLDEPTNHLDLDMRQALTEALIDFEGAL----VVVSHDRHLLRSTTDDLYLVHDGKVE 506
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
24-237 |
3.24e-06 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 47.98 E-value: 3.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 24 KEVIGNLDLNVNHGEFLTILGPSGCGKTTV----LRMIAGFEtadsGQILLAEQNVTQVPAE--QRHVNTVFQSYALFPH 97
Cdd:cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLslafFRMVDIFD----GKIVIDGIDISKLPLHtlRSRLSIILQDPILFSG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 98 mtvfeNVAFGLRMQKVPNSEiepRVMDALKMVRLEPMAQRKPHQL-----------SGGQQQRIAIARAVVNKPKVLLLD 166
Cdd:cd03288 110 -----SIRFNLDPECKCTDD---RLWEALEIAQLKNMVKSLPGGLdavvteggenfSVGQRQLFCLARAFVRKSSILIMD 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1140790956 167 ESLSALDyklrkqMQIElKQLQRQLGITF-----IFVTHDQEEALSmSDRIIVMRDGVIEQDGTPREIYEEPKNLF 237
Cdd:cd03288 182 EATASID------MATE-NILQKVVMTAFadrtvVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLAQEDGVF 249
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
27-216 |
3.87e-06 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 46.58 E-value: 3.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 27 IGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAgfetadsgqillaeqnvtqvpaeqrhvntvfqsYALFPHMTVFENVAF 106
Cdd:cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIG---------------------------------LALGGAQSATRRRSG 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 107 GLRMQKVPNSEIEPRVMDalkmvrlepmaqrkpHQLSGGQQQRIAIARAVVN---KPKVL-LLDESLSALD-YKLRKQMQ 181
Cdd:cd03227 58 VKAGCIVAAVSAELIFTR---------------LQLSGGEKELSALALILALaslKPRPLyILDEIDRGLDpRDGQALAE 122
|
170 180 190
....*....|....*....|....*....|....*
gi 1140790956 182 IELKQLQRQLgiTFIFVTHDQEEALsMSDRIIVMR 216
Cdd:cd03227 123 AILEHLVKGA--QVIVITHLPELAE-LADKLIHIK 154
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
12-203 |
4.58e-06 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 48.70 E-value: 4.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGISKSFDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIA-----GFETadSGQILLAEQNV----------- 75
Cdd:PLN03073 178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAmhaidGIPK--NCQILHVEQEVvgddttalqcv 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 76 -------TQVPAEQRHVntvFQSYALFPHMTVFENVAFGL------------------RMQKVPNSEIEPRVMDALKMVR 130
Cdd:PLN03073 256 lntdierTQLLEEEAQL---VAQQRELEFETETGKGKGANkdgvdkdavsqrleeiykRLELIDAYTAEARAASILAGLS 332
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1140790956 131 LEP-MAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQLQRqlgiTFIFVTHDQE 203
Cdd:PLN03073 333 FTPeMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPK----TFIVVSHARE 402
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
16-218 |
9.03e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 47.80 E-value: 9.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 16 GISKsfDGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAgfETADSGQILLAEQNVTQVPAE---QRHVNTVFQSY 92
Cdd:TIGR00956 770 KIKK--EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLA--ERVTTGVITGGDRLVNGRPLDssfQRSIGYVQQQD 845
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 93 ALFPHMTVFENVAFGLRM---QKVPNSEIEPRVMDALKMVRLEPMAQR---KPHQ-LSGGQQQRIAIARAVVNKPKVLL- 164
Cdd:TIGR00956 846 LHLPTSTVRESLRFSAYLrqpKSVSKSEKMEYVEEVIKLLEMESYADAvvgVPGEgLNVEQRKRLTIGVELVAKPKLLLf 925
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1140790956 165 LDESLSALDyklrKQMQIELKQLQRQLGIT--FIFVTHDQEEALSMS--DRIIVMRDG 218
Cdd:TIGR00956 926 LDEPTSGLD----SQTAWSICKLMRKLADHgqAILCTIHQPSAILFEefDRLLLLQKG 979
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
27-215 |
9.69e-06 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 45.39 E-value: 9.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 27 IGNLDLNVNHGEFLTILGPSGCGKTTVLrmiagFET-ADSGQILLAEqnVTQVPAEQRhvnTVF--QSYALfphmtvfen 103
Cdd:cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV-----NEGlYASGKARLIS--FLPKFSRNK---LIFidQLQFL--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 104 VAFGLrmqkvpnseieprvmdalKMVRLEpmaqRKPHQLSGGQQQRIAIAR--AVVNKPKVLLLDESLSALDYKLRKQMQ 181
Cdd:cd03238 72 IDVGL------------------GYLTLG----QKLSTLSGGELQRVKLASelFSEPPGTLFILDEPSTGLHQQDINQLL 129
|
170 180 190
....*....|....*....|....*....|....
gi 1140790956 182 IELKQLqRQLGITFIFVTHDqEEALSMSDRIIVM 215
Cdd:cd03238 130 EVIKGL-IDLGNTVILIEHN-LDVLSSADWIIDF 161
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
143-237 |
1.05e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 47.47 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 143 SGGQQQRIAIARAVVNK-PKVLLLDESLSALDYKLRKQMQIELkqLQRQLGITFIFVTHdQEEALSMSDRIIVMRDGVIE 221
Cdd:PTZ00243 1447 SVGQRQLMCMARALLKKgSGFILMDEATANIDPALDRQIQATV--MSAFSAYTVITIAH-RLHTVAQYDKIIVMDHGAVA 1523
|
90
....*....|....*.
gi 1140790956 222 QDGTPREIYEEPKNLF 237
Cdd:PTZ00243 1524 EMGSPRELVMNRQSIF 1539
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
12-218 |
1.82e-05 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 45.29 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 12 VQLTGIsKSFDGKEVIgnldlnvnhgEFLT----ILGPSGCGKTTVLRMI------AGFETADSGQI---LLAEQNV-TQ 77
Cdd:cd03240 4 LSIRNI-RSFHERSEI----------EFFSpltlIVGQNGAGKTTIIEALkyaltgELPPNSKGGAHdpkLIREGEVrAQ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 78 VPAEQRHVN----TVFQSYAlfphmtVFENVAFglrmqkVPNSEIEPRVMDALKmvrlepmaqrkphQLSGGQQQ----- 148
Cdd:cd03240 73 VKLAFENANgkkyTITRSLA------ILENVIF------CHQGESNWPLLDMRG-------------RCSGGEKVlasli 127
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1140790956 149 -RIAIARAVVNKPKVLLLDESLSALD-----YKLRKQMQIELKQLQRQLGItfifVTHDQEEALSMSDRIIVMRDG 218
Cdd:cd03240 128 iRLALAETFGSNCGILALDEPTTNLDeenieESLAEIIEERKSQKNFQLIV----ITHDEELVDAADHIYRVEKDG 199
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
37-201 |
4.39e-05 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 45.55 E-value: 4.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 37 GEFLTILGPSGCGKTTVLRMIAGFETADSGQIllaeqnvtQVPAEQRHVNTVFQSYALFPHmtvFENVAFG-LRM-QKVP 114
Cdd:COG1245 99 GKVTGILGPNGIGKSTALKILSGELKPNLGDY--------DEEPSWDEVLKRFRGTELQDY---FKKLANGeIKVaHKPQ 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 115 NSEIEPRVMD--------------ALKMVR----LEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKL 176
Cdd:COG1245 168 YVDLIPKVFKgtvrellekvdergKLDELAeklgLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSYLDIYQ 247
|
170 180
....*....|....*....|....*
gi 1140790956 177 RKQMQIELKQLQRQlGITFIFVTHD 201
Cdd:COG1245 248 RLNVARLIRELAEE-GKYVLVVEHD 271
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
27-229 |
4.66e-05 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 45.27 E-value: 4.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 27 IGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLaeqnvtqvpaeQRHVNTVFQSYALFPHMTVFENVAF 106
Cdd:PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDI-----------KGSAALIAISSGLNGQLTGIENIEL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 107 -GLRM--QKVPNSEIEPRVMDALKMVRL--EPMaqrkpHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQ 181
Cdd:PRK13545 109 kGLMMglTKEKIKEIIPEIIEFADIGKFiyQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCL 183
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1140790956 182 IELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREI 229
Cdd:PRK13545 184 DKMNEFKEQ-GKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEV 230
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
29-262 |
7.91e-05 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 43.65 E-value: 7.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 29 NLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQIllaeqnvtqvpaeQRH--VNTVFQSYALFPHMTVFENVAF 106
Cdd:PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV-------------DRNgeVSVIAISAGLSGQLTGIENIEF 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 107 GLRMQKVPNSEIEPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQIELKQ 186
Cdd:PRK13546 109 KMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYE 188
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 187 LQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREI---YEEPKNLFVARFIGEINVFeataKSRQDEKRIV 262
Cdd:PRK13546 189 FKEQ-NKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVlpkYEAFLNDFKKKSKAEQKEF----RNKLDESRFV 262
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
142-236 |
2.18e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 43.46 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 142 LSGGQQQRIAIARAVVNK-PKVL-LLDESLSALDYKLRKQMQIELKQLqRQLGITFIFVTHDqEEALSMSDRIIVMRDG- 218
Cdd:TIGR00630 489 LSGGEAQRIRLATQIGSGlTGVLyVLDEPSIGLHQRDNRRLINTLKRL-RDLGNTLIVVEHD-EDTIRAADYVIDIGPGa 566
|
90 100
....*....|....*....|....
gi 1140790956 219 ------VIEQdGTPREIYEEPKNL 236
Cdd:TIGR00630 567 gehggeVVAS-GTPEEILANPDSL 589
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
37-201 |
2.64e-04 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 42.87 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 37 GEFLTILGPSGCGKTTVLRMIagfetadSGQILlaeQNVTQVPAE-------QRHVNTVFQSYalfphmtvFENVAFG-L 108
Cdd:PRK13409 99 GKVTGILGPNGIGKTTAVKIL-------SGELI---PNLGDYEEEpswdevlKRFRGTELQNY--------FKKLYNGeI 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 109 R-------MQKVPN------SEI-----EPRVMDAL-KMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESL 169
Cdd:PRK13409 161 KvvhkpqyVDLIPKvfkgkvRELlkkvdERGKLDEVvERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPT 240
|
170 180 190
....*....|....*....|....*....|..
gi 1140790956 170 SALDYKLRKQMQIELKQLQRqlGITFIFVTHD 201
Cdd:PRK13409 241 SYLDIRQRLNVARLIRELAE--GKYVLVVEHD 270
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
26-229 |
3.88e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 42.80 E-value: 3.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 26 VIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQILLAEQNVTQVP-AEQRHVNTVF-QSYALFPHMTVFEN 103
Cdd:PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGlMDLRKVLGIIpQAPVLFSGTVRFNL 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 104 VAFglrmqkvpNSEIEPRVMDALKMVRLEPMAQRKPHQL-----------SGGQQQRIAIARAVVNKPKVLLLDESLSAL 172
Cdd:PLN03130 1334 DPF--------NEHNDADLWESLERAHLKDVIRRNSLGLdaevseagenfSVGQRQLLSLARALLRRSKILVLDEATAAV 1405
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140790956 173 DYK----LRKQMQIELKqlqrqlGITFIFVTHDQEEALSmSDRIIVMRDGVIEQDGTPREI 229
Cdd:PLN03130 1406 DVRtdalIQKTIREEFK------SCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENL 1459
|
|
| CMPK |
cd02020 |
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine ... |
41-72 |
4.12e-04 |
|
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Pssm-ID: 238978 [Multi-domain] Cd Length: 147 Bit Score: 40.16 E-value: 4.12e-04
10 20 30
....*....|....*....|....*....|....*
gi 1140790956 41 TILGPSGCGKTTVLRMIA---GFETADSGQILLAE 72
Cdd:cd02020 3 AIDGPAGSGKSTVAKLLAkklGLPYLDTGGIRTEE 37
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
31-232 |
5.44e-04 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 41.92 E-value: 5.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 31 DLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADSGQ--------ILLA-EQNVTQVPAEQRHVNTVFQSyalfphmtVF 101
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGErqsqfshiTRLSfEQLQKLVSDEWQRNNTDMLS--------PG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 102 ENvAFGLRMQKVPNSEI--EPRVMDALKMVRLEPMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQ 179
Cdd:PRK10938 95 ED-DTGRTTAEIIQDEVkdPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQ 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 180 MQIELKQLQRQlGITFIFVTHDQEEALSMSDRIIVMRDGVIEQDGTPREIYEE 232
Cdd:PRK10938 174 LAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
22-222 |
8.18e-04 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 40.61 E-value: 8.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 22 DGKEVIGNLDLNVNHGEFLTILGPSGCGKTTVLRMIAGFETADsGQILLAEQNVTQVPAEQRHvntvfQSYALFPHMTVF 101
Cdd:cd03289 15 GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDGVSWNSVPLQKWR-----KAFGVIPQKVFI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 102 ENVAFglRMQKVPNSE-IEPRVMDALKMVRLEPMAQRKPHQL-----------SGGQQQRIAIARAVVNKPKVLLLDESL 169
Cdd:cd03289 89 FSGTF--RKNLDPYGKwSDEEIWKVAEEVGLKSVIEQFPGQLdfvlvdggcvlSHGHKQLMCLARSVLSKAKILLLDEPS 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1140790956 170 SALDyklRKQMQIELKQLQRQLGITFIFVTHDQEEALSMSDRIIVMRDGVIEQ 222
Cdd:cd03289 167 AHLD---PITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQ 216
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
37-173 |
1.18e-03 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 40.98 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140790956 37 GEFLTILGPSGCGKTTVLRMIAGFETadsGQILLAEQNVTQVPAEQ----RHVNTVFQSYALFPHMTVFENVAFG--LRM 110
Cdd:PLN03140 906 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIRISGFPKKQetfaRISGYCEQNDIHSPQVTVRESLIYSafLRL 982
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140790956 111 QKVPNSEIEPR----VMDALKMVRLEPMAQRKP--HQLSGGQQQRIAIARAVVNKPKVLLLDESLSALD 173
Cdd:PLN03140 983 PKEVSKEEKMMfvdeVMELVELDNLKDAIVGLPgvTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
142-215 |
1.96e-03 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 39.16 E-value: 1.96e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1140790956 142 LSGGQQQRIAIARAVVNKPKVLL--LDESLSALDYKLRKQMQIELKQLqRQLGITFIFVTHDqEEALSMSDRIIVM 215
Cdd:cd03270 138 LSGGEAQRIRLATQIGSGLTGVLyvLDEPSIGLHPRDNDRLIETLKRL-RDLGNTVLVVEHD-EDTIRAADHVIDI 211
|
|
| |
