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Conserved domains on  [gi|1140791264|ref|WP_076651371|]
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MULTISPECIES: molybdate ABC transporter permease subunit [unclassified Vibrio]

Protein Classification

molybdate ABC transporter permease( domain architecture ID 10793250)

molybdate ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter for molybdenum, and is responsible for the translocation of the substrate across the membrane

Gene Symbol:  modB
Gene Ontology:  GO:0055052|GO:0015689|GO:0043190|GO:0140359|GO:0042626|GO:0016020
PubMed:  11421278|25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
modB PRK09421
molybdate ABC transporter permease subunit;
2-230 3.03e-144

molybdate ABC transporter permease subunit;


:

Pssm-ID: 181841  Cd Length: 229  Bit Score: 401.99  E-value: 3.03e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264   2 MYLSEYEYQALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWL 81
Cdd:PRK09421    1 MILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  82 NDVFGIVFSFSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARS 161
Cdd:PRK09421   81 YEWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARS 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140791264 162 LGEFGATISFVSNIPGETQTIPLAMYTFIETPGAEMEAARLCAISIVIALGSLMLSEWLNRKSAQRLGG 230
Cdd:PRK09421  161 LGEFGATITFVSNIPGETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRLGA 229
 
Name Accession Description Interval E-value
modB PRK09421
molybdate ABC transporter permease subunit;
2-230 3.03e-144

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 401.99  E-value: 3.03e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264   2 MYLSEYEYQALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWL 81
Cdd:PRK09421    1 MILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  82 NDVFGIVFSFSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARS 161
Cdd:PRK09421   81 YEWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARS 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140791264 162 LGEFGATISFVSNIPGETQTIPLAMYTFIETPGAEMEAARLCAISIVIALGSLMLSEWLNRKSAQRLGG 230
Cdd:PRK09421  161 LGEFGATITFVSNIPGETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRLGA 229
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 4-227 5.18e-107

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 307.36  E-value: 5.18e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264   4 LSEYEYQALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLND 83
Cdd:COG4149     1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  84 VFGIVFSFSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLG 163
Cdd:COG4149    81 LFGISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALG 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1140791264 164 EFGATISFVSNIPGETQTIPLAMYTFIETpGAEMEAARLCAISIVIALGSLMLSEWLNRKSAQR 227
Cdd:COG4149   161 EFGATLMFAGNIPGKTQTLPLAIYDAVEA-GDYAAAHALSLILLAISFVVLLLLNLLNRRRRRR 223
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 14-223 1.68e-79

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 237.14  E-value: 1.68e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  14 LSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLnDVFGIVFSFSW 93
Cdd:TIGR02141   2 LSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLL-ELFGISLVFTF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  94 KGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFGATISFVS 173
Cdd:TIGR02141  81 TGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAG 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1140791264 174 NIPGETQTIPLAMYTFIEtpGAEMEAARLCAISIVIALGSLMLSEWLNRK 223
Cdd:TIGR02141 161 NIPGETQTIPLAIYDAVE--SDYELAHQLSLVLLAISLIVLLLVELLNKR 208
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 12-214 1.96e-19

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 82.33  E-value: 1.96e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  12 LMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLNDVFGIVfsf 91
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPAL--- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  92 swkgaaLACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFGATISF 171
Cdd:cd06261    78 ------ILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFL 151

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1140791264 172 VSNIPGetqtIPLAMYTFIETPGAEMEAARLCAISIVIALGSL 214
Cdd:cd06261   152 GGGEAP----GPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 15-209 8.89e-15

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 69.88  E-value: 8.89e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  15 SLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWlndvfGIVFSFSwk 94
Cdd:NF038017    1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL-----GLLYTPT-- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  95 GAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIpGIITGTMLSFARSLGEFGATISFVSN 174
Cdd:NF038017   74 AMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLLKEARF-ALLAAVLAGFGRAISEVGAVMMVGGN 152

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1140791264 175 IPGETQTIPLAmyTFIETPGAEMEAArlCAISIVI 209
Cdd:NF038017  153 IRGYTRVLTTA--IVLETSKGNFDLA--LALGIIL 183
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 30-215 1.24e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 53.07  E-value: 1.24e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  30 GICLAWLLAKKQ-FVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLndvfgivfsfswkgAALACVVVALPLM 108
Cdd:pfam00528   1 GIPLGIIAALRRgRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGIL--------------PAIILALLGWAGY 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264 109 VRSIRLS-LETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFgATISFVSNIPGETQTIPLAMY 187
Cdd:pfam00528  67 ARLIRRAaLRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGA-VLLEFLGSWPGLGLLLIEAIL 145

                         170       180
                  ....*....|....*....|....*...
gi 1140791264 188 TFIETPGAEMEAARLCAISIVIALGSLM 215
Cdd:pfam00528 146 GYDYPEIQGPVLAAALILLLLNLLVDIL 173
 
Name Accession Description Interval E-value
modB PRK09421
molybdate ABC transporter permease subunit;
2-230 3.03e-144

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 401.99  E-value: 3.03e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264   2 MYLSEYEYQALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWL 81
Cdd:PRK09421    1 MILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  82 NDVFGIVFSFSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARS 161
Cdd:PRK09421   81 YEWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARS 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140791264 162 LGEFGATISFVSNIPGETQTIPLAMYTFIETPGAEMEAARLCAISIVIALGSLMLSEWLNRKSAQRLGG 230
Cdd:PRK09421  161 LGEFGATITFVSNIPGETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRLGA 229
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 4-227 5.18e-107

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 307.36  E-value: 5.18e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264   4 LSEYEYQALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLND 83
Cdd:COG4149     1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  84 VFGIVFSFSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLG 163
Cdd:COG4149    81 LFGISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALG 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1140791264 164 EFGATISFVSNIPGETQTIPLAMYTFIETpGAEMEAARLCAISIVIALGSLMLSEWLNRKSAQR 227
Cdd:COG4149   161 EFGATLMFAGNIPGKTQTLPLAIYDAVEA-GDYAAAHALSLILLAISFVVLLLLNLLNRRRRRR 223
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 14-223 1.68e-79

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 237.14  E-value: 1.68e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  14 LSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLnDVFGIVFSFSW 93
Cdd:TIGR02141   2 LSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLL-ELFGISLVFTF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  94 KGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFGATISFVS 173
Cdd:TIGR02141  81 TGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAG 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1140791264 174 NIPGETQTIPLAMYTFIEtpGAEMEAARLCAISIVIALGSLMLSEWLNRK 223
Cdd:TIGR02141 161 NIPGETQTIPLAIYDAVE--SDYELAHQLSLVLLAISLIVLLLVELLNKR 208
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 10-224 1.57e-60

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 191.12  E-value: 1.57e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  10 QALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLNDvFGIVF 89
Cdd:COG0555    54 AALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAP-LGIKV 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  90 SFSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFGATI 169
Cdd:COG0555   133 AFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVI 212

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1140791264 170 SFVSNIPGETQTIPLAMYTFIETPGAEMeAARLCAISIVIALGSLMLSEWLNRKS 224
Cdd:COG0555   213 FIAGNLPMKTEILPLLIYLKLEEGDYAG-ATAIALVLLLISFLLLLLINLLQRRS 266
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 11-217 2.15e-47

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 156.02  E-value: 2.15e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  11 ALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLNDVfGIVFS 90
Cdd:TIGR01581  22 ALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPYLEAA-GIQVI 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  91 FSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFGATIS 170
Cdd:TIGR01581 101 FSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARALGEFGATLM 180

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1140791264 171 FVSNIPGETQTIPLAMYTFIETPGAEMeaARLCAISIVIALGSLMLS 217
Cdd:TIGR01581 181 FAGSIQGKTRTLPLAIYLNIQSDNIEA--AVASALLLLVIAFLLLLV 225
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 11-209 3.20e-43

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 146.73  E-value: 3.20e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  11 ALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLNDvFGIVFS 90
Cdd:TIGR00969  61 AYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLAS-FGIQII 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  91 FSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFGATIS 170
Cdd:TIGR00969 140 FTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVV 219

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1140791264 171 FVSNIPGETQTIPLAMYTFIE---TPGAEMEAARLCAISIVI 209
Cdd:TIGR00969 220 VSGNIPGKTLTLPLLIEERLEqydYPGAYVIAAVLLLVSLVT 261
cysT CHL00187
sulfate transport protein; Provisional
 11-192 6.94e-42

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 142.08  E-value: 6.94e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  11 ALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLNdVFGIVFS 90
Cdd:CHL00187   56 AYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLLS-HLGIQIV 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  91 FSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFGATIS 170
Cdd:CHL00187  135 FTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVI 214

                         170       180
                  ....*....|....*....|..
gi 1140791264 171 FVSNIPGETQTIPLAMYTFIET 192
Cdd:CHL00187  215 ISSNIPFKDLVASVLIFQSLEQ 236
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 10-227 6.10e-40

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 137.94  E-value: 6.10e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  10 QALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLndvfgivf 89
Cdd:COG1177    61 DALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLW-------- 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  90 sfswkGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFGATi 169
Cdd:COG1177   133 -----GLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVIT- 206

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1140791264 170 SFVSniPGETQTIPLAMYTFIETpGAEMEAARLCAISIVIALGSLMLSEWLNRKSAQR 227
Cdd:COG1177   207 LFLA--GPGVTTLPVYIYSMIRR-GISPEINALSTLLILLSLLLLLLAERLRRRGERR 261
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 11-223 1.58e-37

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 131.68  E-value: 1.58e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  11 ALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLNDvFGIVFS 90
Cdd:TIGR02139  51 AYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLAP-LGIKIA 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  91 FSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFGATIS 170
Cdd:TIGR02139 130 FTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSVIF 209

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1140791264 171 FVSNIPGETQTIPLAMYTFIET---PGAEMEAARLCAISIVIALGSLMLSEWLNRK 223
Cdd:TIGR02139 210 IAGNLPMKTEIAPLLIFQKLEQydyAGATAIASVMLIISFVILLFINLLQWWALRY 265
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
5-223 4.68e-36

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 132.98  E-value: 4.68e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264   5 SEYEYQALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLNDV 84
Cdd:COG1178    49 DPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRAL 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  85 FGIVFS--FSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSL 162
Cdd:COG1178   129 FGLEPPdiYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCL 208

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140791264 163 GEFGAtisfVSNIPGETQTIPLAMYTFIETPGAEMEAARLCAISIVIALGSLMLSEWLNRK 223
Cdd:COG1178   209 ADFGT----PLVLGGGYTTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRR 265
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
11-216 5.42e-34

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 122.94  E-value: 5.42e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  11 ALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLNDvFGIVFS 90
Cdd:PRK10971   59 AYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAK-FDIKVT 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  91 FSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFGATIS 170
Cdd:PRK10971  138 YTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIF 217

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1140791264 171 FVSNIPGETQTIPLAMYTFIEtpgaEMEAARLCAISIVIALGSLML 216
Cdd:PRK10971  218 IAGNIAWKTEVTSLMIFVRLQ----EFDYPAASAIASVILAASLLL 259
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
10-224 1.80e-32

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 123.35  E-value: 1.80e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  10 QALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMmgrqgiigswLNDVFGIVF 89
Cdd:COG1178   338 RALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLL----------FNRPLPLLL 407

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  90 SFSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFGATI 169
Cdd:COG1178   408 YGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATL 487

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1140791264 170 SFVsniPGETQTIPLAMYTFIETPGAEmEAARLCAISIVIALGSLMLSEWLNRKS 224
Cdd:COG1178   488 LLR---PPGFETLAVLIYQLASSGRYG-EAAALALLLVLVSLLPVLLLERLLGRR 538
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 9-229 4.23e-27

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 104.84  E-value: 4.23e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264   9 YQALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLNDvFGIV 88
Cdd:COG1176    66 LKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLA-LGLI 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  89 -----FSFSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLG 163
Cdd:COG1176   145 deplrLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALG 224

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1140791264 164 EFgATISFVSniPGETQTIPLAMYTFIETPGAEMEAARLCAISIVIALGSLMLSEWLNRKSAQRLG 229
Cdd:COG1176   225 AF-VTPALLG--GGKVLMIGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
11-226 2.15e-24

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 97.90  E-value: 2.15e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  11 ALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLnDVFGIVFS 90
Cdd:PRK11602   65 AIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWL-DEHNLQLM 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  91 FSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFGAtIS 170
Cdd:PRK11602  144 FSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGA-VS 222

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264 171 FVS-NIPGETQTIPLA---MYTFIETPGAEMEAARLCAISIVIALGSLMLSEWLNRKSAQ 226
Cdd:PRK11602  223 VVSgSIRGETLSLPLQielLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRLENQEKR 282
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 12-214 1.96e-19

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 82.33  E-value: 1.96e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  12 LMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLNDVFGIVfsf 91
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPAL--- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  92 swkgaaLACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFGATISF 171
Cdd:cd06261    78 ------ILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFL 151

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1140791264 172 VSNIPGetqtIPLAMYTFIETPGAEMEAARLCAISIVIALGSL 214
Cdd:cd06261   152 GGGEAP----GPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 11-232 1.90e-16

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 76.20  E-value: 1.90e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  11 ALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLNDVFG---- 86
Cdd:PRK15050   74 ALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVNIALQRLFGleap 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  87 -IVFSFSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEF 165
Cdd:PRK15050  154 pLDFLYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEF 233

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140791264 166 GATISFVSNipgETQTIPLAMYTF----IETPGAemeaarlCAISIVIALGSLMLSEWLNRKSAQRLGGNA 232
Cdd:PRK15050  234 GIVLFTGAK---DVVTLPVLIYSKaivdFDYPTA-------CAIAVVNLALSLGLYALYRRVNRRAGGGSR 294
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 9-196 5.04e-15

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 71.99  E-value: 5.04e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264   9 YQALMLSLKVAGFAILWLIPIGICLAWLL---AKKQFVGKsIVESIVHLPLVLPPVVIG---YLLLVMMgrqgiigswln 82
Cdd:COG0581    40 LPAIVGTLLLVLLATLIAVPLGVLAAIYLaeyARGGRLAR-LIRFAIDVLAGVPSIVYGlfgYALFVLT----------- 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  83 dvFGIVFSFSWKGAALACVVvaLPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSL 162
Cdd:COG0581   108 --LGLGFSLLAGALALALLM--LPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAA 183

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1140791264 163 GE-------FGATISFVSNIPGETQTIPLAMYTFIETPGAE 196
Cdd:COG0581   184 GEtapllftAGVSPFLPLSLFDPFATLPVHIYNLASSPYPA 224
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
9-187 7.19e-15

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 72.09  E-value: 7.19e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264   9 YQALMLSLKVAGFAILWLIPIGICLAWLLAKKqFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQ-GIIGSWLNdVFGI 87
Cdd:COG1175    75 WNALGNTLLFTVVSVPLQLVLGLLLALLLNRK-LRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDyGLLNALLG-ALGL 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  88 vFSFSWKG---AALACVVVA-----LPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFA 159
Cdd:COG1175   153 -EPINWLGdpsLALPAVIIVtvwkgTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTI 231

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1140791264 160 RSLGEFgaTISFV---SNIPGETQTIPLAMY 187
Cdd:COG1175   232 GALQVF--DLVYVltgGGPGNSTTTLVLYIY 260
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 15-209 8.89e-15

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 69.88  E-value: 8.89e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  15 SLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWlndvfGIVFSFSwk 94
Cdd:NF038017    1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL-----GLLYTPT-- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  95 GAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIpGIITGTMLSFARSLGEFGATISFVSN 174
Cdd:NF038017   74 AMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLLKEARF-ALLAAVLAGFGRAISEVGAVMMVGGN 152

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1140791264 175 IPGETQTIPLAmyTFIETPGAEMEAArlCAISIVI 209
Cdd:NF038017  153 IRGYTRVLTTA--IVLETSKGNFDLA--LALGIIL 183
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 10-223 2.22e-13

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 67.32  E-value: 2.22e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  10 QALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVmmgrqgiigswLNDVFGIVF 89
Cdd:PRK09500   57 QAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLV-----------LFMLLGIQL 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  90 SFsWKgAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEfgATI 169
Cdd:PRK09500  126 GF-WS-LLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDD--VVV 201

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1140791264 170 SFVSNIPGeTQTIPLAMYTFIETpGAEMEAARLCAISIVIALGSLMLSEWLNRK 223
Cdd:PRK09500  202 SSFVTGPS-YEILPLKIYSMVKV-GVSPEVNALATILLVLSLVLVILSQLLARD 253
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 10-167 2.16e-12

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 65.86  E-value: 2.16e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  10 QALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWL--NDVFGI 87
Cdd:TIGR03262  54 QSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLggFSIYGF 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  88 VfsfswkGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFGA 167
Cdd:TIGR03262 134 W------GIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGV 207
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 10-211 2.73e-12

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 64.35  E-value: 2.73e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  10 QALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLndvfgivf 89
Cdd:COG0395    74 RYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYW-------- 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  90 sfswkGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFGATI 169
Cdd:COG0395   146 -----GLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPL 220

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1140791264 170 SFVSNipGETQTIPLAMYTFIETPGAEMEAarLCAISIVIAL 211
Cdd:COG0395   221 ILLTS--PDLRTLPVGLASFQGQYGTDWGL--LMAAAVIATL 258
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 11-165 1.17e-11

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 63.19  E-value: 1.17e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  11 ALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGS---WLNDVFGI 87
Cdd:PRK10683   98 AYLQSLQVAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNfllWLGVIDQP 177

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140791264  88 VFSFSWKGAALACVVVA-LPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEF 165
Cdd:PRK10683  178 LTILHTNLAVYIGIVYAyLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEF 256
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 11-228 9.55e-11

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 60.25  E-value: 9.55e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  11 ALMLSLKVAGFAILWLIPIGICLAWLLAK-KQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLND--VFGI 87
Cdd:PRK10592   64 AVGLSLTIAACAATAAAILGTIAAVVMVRfGRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALAHAIGWPADrgMLTI 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  88 VFSFSWKGAALACVVvalplmvrsIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFgA 167
Cdd:PRK10592  144 WLAHVTFCTAYVAVV---------ISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDL-V 213

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1140791264 168 TISFVSNiPGETqTIPLAMYTFIETpGAEMEAARLCAIsIVIALGSLMLSEW--LNRKSAQRL 228
Cdd:PRK10592  214 IASFVSG-PGAT-TLPMLVFSSVRM-GVNPEINALATL-ILGVVGIVGFIAWylMARAEKQRI 272
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 9-223 3.62e-10

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 58.40  E-value: 3.62e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264   9 YQALMLSLKVAGFAILWLIPIGICLAWLL---AKKQFVGKsIVESIVHLPLVLPPVVIG---YLLLVMMGrqgiigswln 82
Cdd:TIGR00974  53 GPAIVGTLLLTLLAIVIAVPLGIGAAIYLaeyANGSRFTK-IIRFAVDILAGVPSIVVGlfgYGFFVLTY---------- 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  83 dvfgIVFSFSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSL 162
Cdd:TIGR00974 122 ----LGGGFSLLAGALALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAA 197

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140791264 163 GE-----FGATIS--FVSNIPGETQTIPLAMYTFIeTPGAEMEAARL----CAISIVIALGSLMLSEWLNRK 223
Cdd:TIGR00974 198 GEtapllFTAGGSafTPPNLFDPFATLPVLIYNLA-SEGPYVEAQQLawaaALVLIVLVLLLNLIARLLRRR 268
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 10-217 5.77e-10

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 58.05  E-value: 5.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  10 QALMLSLKVAGFAILWLIPIGICLAWLL---AKKQfvGKSIVESIVHLPLVLPPVVIGYLLLVMMGR--QGIIGSWLNDV 84
Cdd:TIGR02138  63 PLIVGTLITSLIALLIAVPVGIGIAIFLseiAPKR--VRSVLKPVVELLAGIPSVVYGFWGLFVLVPflKPHFQPFLGSN 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  85 FGIV--FSFSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSL 162
Cdd:TIGR02138 141 LGLIplFGGPILTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRAL 220

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1140791264 163 GEF--------GATISFVSNI--PGETQTIPLAMyTFIETPGAEMEAARLCAISIVIALGSLMLS 217
Cdd:TIGR02138 221 GETmavtmvigNVFPISPLSLfdPGTTITSLIAN-QFGEASGGSVHTSALFALGLVLFVITLLVN 284
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 15-229 1.29e-09

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 57.02  E-value: 1.29e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  15 SLKVAGFAILWLIPIGICLAWLL---AKKQFvgKSIVESIVHLPLVLPPVVIGYLLLVmmgrqgIIGSWLNDVFG-IVFS 90
Cdd:COG0573    82 TLLVSLIALLIAVPLGLGIAIFLseyAPPRL--RRILKPAIELLAGIPSVVYGFWGLF------VLVPLLRDLFPwPPSG 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  91 FSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGE------ 164
Cdd:COG0573   154 FSLLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGEtmavlm 233

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140791264 165 -FGATISFVSNI--PGETQTIPLAMyTFIETPGAEMEAARLCAISIV---IALGSLMLSEWLNRKSAQRLG 229
Cdd:COG0573   234 vAGNAPQIPFSLfdPGRTLTALIAL-EFGEAPFGSLHYSALFALGLVlfvITLLVNLLARLIVRRYREKYG 303
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 10-165 2.89e-09

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 55.85  E-value: 2.89e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  10 QALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLNDVfGIV- 88
Cdd:PRK09497   63 EVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWL-GVId 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  89 ----FSFSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGE 164
Cdd:PRK09497  142 tpirIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGM 221


                  .
gi 1140791264 165 F 165
Cdd:PRK09497  222 F 222
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 30-215 1.24e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 53.07  E-value: 1.24e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  30 GICLAWLLAKKQ-FVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLndvfgivfsfswkgAALACVVVALPLM 108
Cdd:pfam00528   1 GIPLGIIAALRRgRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGIL--------------PAIILALLGWAGY 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264 109 VRSIRLS-LETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFgATISFVSNIPGETQTIPLAMY 187
Cdd:pfam00528  67 ARLIRRAaLRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGA-VLLEFLGSWPGLGLLLIEAIL 145

                         170       180
                  ....*....|....*....|....*...
gi 1140791264 188 TFIETPGAEMEAARLCAISIVIALGSLM 215
Cdd:pfam00528 146 GYDYPEIQGPVLAAALILLLLNLLVDIL 173
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 68-229 3.63e-08

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 52.50  E-value: 3.63e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  68 LVMMGRQGIIGSWLNDvFGI----VFS-FSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTIT 142
Cdd:COG4132   122 IATLGRNGLVTLLLKQ-LGIdlydGFNlYSFWGLILVYLYFQIPLMVLLLYPALDGLRREWREAAALLGASRWQYWRRVA 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264 143 LPLMIPGIITGTMLSFARSLGEFGATISFVSnipGETQTIPLAMYTFI--ETPGAEMEAARLCAISIVIALGSLMLSEWL 220
Cdd:COG4132   201 LPVLAPSLLGTFLLLFANAFGAYATAYALTG---GNYNLVPIRIGALIsgDVLLDPNLGAALALGMIVIMALVMALYQWL 277


                  ....*....
gi 1140791264 221 NRKSAQRLG 229
Cdd:COG4132   278 QRRSRRWLR 286
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 9-162 4.18e-07

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 49.38  E-value: 4.18e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264   9 YQALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKsIVESIVHLPLVLPPVVIGYLLLvmmgrqgiigswlndvfgIV 88
Cdd:COG0600    60 WEHLLASLLRVLLGFALAALLGVPLGLLLGLSRLLRR-LLDPLLVFLRPIPPLALAPLLI------------------LW 120

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1140791264  89 FSFSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSL 162
Cdd:COG0600   121 FGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAW 194
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 116-211 4.46e-07

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 49.38  E-value: 4.46e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264 116 LETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEF-GATISFVSNipgETQTIPLAMYTFIeTPG 194
Cdd:COG3833   166 FDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFiLASVLLRSP---ENYTLAVGLYSFV-SDQ 241

                          90
                  ....*....|....*..
gi 1140791264 195 AEMEAARLCAISIVIAL 211
Cdd:COG3833   242 RNTNWGVFAAGAVLVAI 258
malG PRK10998
maltose ABC transporter permease MalG;
15-165 1.34e-06

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 48.17  E-value: 1.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  15 SLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSW--LNDVFGIVFSFs 92
Cdd:PRK10998   88 SVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYIPFigLNTHGGVIFAY- 166

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1140791264  93 wkgaalacvVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSLGEF 165
Cdd:PRK10998  167 ---------LGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEV 230
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 6-225 2.31e-06

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 47.61  E-value: 2.31e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264   6 EYEYQALMLSLKVAGFAILWLIPIGICLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIgSWLNDVF 85
Cdd:TIGR01253  43 DYLQHLILFSFGQAFLSALLSIFFAIFLARALFRKPFLGKKALLKLCALTFILPALVAIFGIIGIYGRQGWL-ATLANLF 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  86 GIVFSFS---WKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARSL 162
Cdd:TIGR01253 122 GLEWQFHiygLQGILIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCF 201

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1140791264 163 GEFgATISFVSNIPGETqTIPLAMYTFIETPGAEMEAARLCAISIVIALGSLMLSEWLNRKSA 225
Cdd:TIGR01253 202 ASF-ATVLSLGGGPQAT-TIELAIYQAILFDFDLAKAALFALLQFVCCLGLFLLSQRFSKAIA 262
pstA PRK11268
phosphate ABC transporter permease PstA;
11-164 7.68e-06

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 45.83  E-value: 7.68e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  11 ALMLSLKVAGFAILWLIPIGICLAWLLA---KKQFVGkSIVESIVHLPLVLPPVVIGYLllvmmgrqgiigswlndVFGI 87
Cdd:PRK11268   82 AIAGSGLLILWATVVGTPLGIMAGIYLAeygRKSWLA-EVIRFINDILLSAPSIVVGLF-----------------VYTI 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  88 VF----SFS-WKGA-ALACVVValPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFARS 161
Cdd:PRK11268  144 VVaqmeHFSgWAGViALALLQI--PIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARI 221


                  ...
gi 1140791264 162 LGE 164
Cdd:PRK11268  222 AGE 224
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 51-169 1.02e-05

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 45.63  E-value: 1.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  51 IVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLNDVFgivfsfswkgaalACVVVALPLMVRSIRLSLETVDSKLEEAAATL 130
Cdd:COG4135   397 LLYLPLLVPQIAFLFGLQVLLLRLGLDGTWLAVIW-------------AHLVFVLPYVFLSLAGPWRALDPRYAQVAASL 463

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1140791264 131 GASPLRVFFTITLPLMIPGIITGTMLSFARSLGEFGATI 169
Cdd:COG4135   464 GASPWRVFWRVKLPLLLRPILTAAAVGFAVSVAQYLPTL 502
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 10-187 1.77e-05

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 45.21  E-value: 1.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  10 QALMLSLKVAGFAILWLIPIGICLAW----LLAKKQFVGKSIVESIVHLPLVLPPVVI--GYLLLVMmgrqgiigswlnd 83
Cdd:PRK09433  319 QALWTSLRIALAAALLAVVLTMMLLWssreLRLRQRKLAAQALELSGMLILAMPGIVLatGLFLLLR------------- 385

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  84 vfGIVFSFSWkgaALACVVV-----ALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSF 158
Cdd:PRK09433  386 --NTTDLPAS---ALGIVILtnalmALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFAFAC 460

                         170       180
                  ....*....|....*....|....*....
gi 1140791264 159 ARSLGEFGAtISFVSNipGETQTIPLAMY 187
Cdd:PRK09433  461 ALSLGDFGV-IALFGS--QDFRTLPFLLY 486
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 9-225 2.18e-05

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 44.83  E-value: 2.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264   9 YQALMLSLKVAGFAILwlipigicLAWLLAKKQFVGKSIVESIVHLPLVLPPVVIGYLLLVMMGRQGIIGSWLNdVFGIV 88
Cdd:PRK09433   51 WQAFLSALLSVLPAIP--------LARALYRRRFPGRGLLLRLCAMTLVLPVLVAVFGLLSVYGRSGWLAQLLQ-ALGLE 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  89 FSFS---WKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPlMIPGIITGT-----ML---S 157
Cdd:PRK09433  122 WPFSiygLQGILLAHVFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWP-YLRRQLPPVaalifMLcftS 200

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1140791264 158 FARSLGEFGAtisfvsniPGETqTIPLAMY---TFIETPGAemeAARLCAISIVIALGSLMLSEWLNRKSA 225
Cdd:PRK09433  201 FATVLTLGGG--------PKAT-TIELAIYqalSFDFDLAR---AALLALLQMVLCLGLVLLSQRLSKAIA 259
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 53-153 4.09e-05

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 43.12  E-value: 4.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  53 HLPLVLPPVVIGYL----LLVMMGRQGIIGSWLNDVFGI---------------VFSFSWKGAALACVVVALPLMVRSIR 113
Cdd:COG1174    23 HLLLVLLALLIALLiavpLGILITRRRRLAGLVLGVANIlqtipslallallipLLGIGPAPAIIALVLYALLPILRNTY 102

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1140791264 114 LSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITG 153
Cdd:COG1174   103 TGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAG 142
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 1-157 2.51e-04

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 41.23  E-value: 2.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264   1 MMYLSEYEYQALMLSLKVAGFAILWLIPIGICLAWLL---AKKQFvgKSIVESIVHLPLVLPPVVIGYLLLVMMG-RQGI 76
Cdd:COG4209    77 FLFSSPDFWRVLRNTLLISLLKLVFGFPLPIILALLLnelRSKRF--KKTVQTISYLPHFLSWVVVAGIVYQFLSpDTGL 154

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140791264  77 IGSWLNDVFG---------------IVFSFSWKG---------AALAcvvvalplmvrsirlsleTVDSKLEEAAATLGA 132
Cdd:COG4209   155 VNQLLRALGGepinfltepkyfrpiYVFSGIWKEagwgsiiylAAIT------------------GIDPELYEAAAIDGA 216

                         170       180
                  ....*....|....*....|....*
gi 1140791264 133 SPLRVFFTITLPLMIPGIITGTMLS 157
Cdd:COG4209   217 GRWQQIWHITLPGIRPTIVILLILN 241
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
101-153 7.76e-04

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 40.08  E-value: 7.76e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1140791264 101 VVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITG 153
Cdd:PRK10952  216 IIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAG 268
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 90-158 1.49e-03

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 38.50  E-value: 1.49e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140791264  90 SFSWKGAALACVVVALPLMVRSIRLSLETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSF 158
Cdd:COG2011    89 SIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTL 157
malF PRK10999
maltose ABC transporter permease MalF;
116-159 2.17e-03

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 38.79  E-value: 2.17e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1140791264 116 LETVDSKLEEAAATLGASPLRVFFTITLPLMIPGIITGTMLSFA 159
Cdd:PRK10999  398 LKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFA 441
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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