NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1140806625|ref|WP_076664878|]
View 

electron transfer flavoprotein-ubiquinone oxidoreductase [Vibrio parahaemolyticus]

Protein Classification

electron transfer flavoprotein-ubiquinone oxidoreductase( domain architecture ID 11428947)

electron transfer flavoprotein-ubiquinone oxidoreductase accepts electrons from ETF and reduces ubiquinone

CATH:  3.30.70.20|3.30.9.90|3.50.50.60
EC:  1.5.5.1
Gene Ontology:  GO:0004174|GO:0022900|GO:0046872|GO:0051539
SCOP:  4000064|4000127

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ETF_QO pfam05187
Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S; Electron-transfer ...
 442-543 3.87e-70

Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S; Electron-transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the inner mitochondrial membrane accepts electrons from electron-transfer flavoprotein which is located in the mitochondrial matrix and reduces ubiquinone in the mitochondrial membrane. The two redox centres in the protein, FAD and a [4Fe4S] cluster, are present in a 64-kDa monomer.


:

Pssm-ID: 461576 [Multi-domain]  Cd Length: 104  Bit Score: 219.79  E-value: 3.87e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 442 GVLSFDRLSSVYLSNIFHEEDQPCHLQLASQRIPIEQNLALYAEPAQRYCPAGVYEIVEGAE--QAELQINAANCIHCKT 519
Cdd:pfam05187   1 GVLTFDRLTSVYLSGTNHEEDQPCHLKLKDPEVPIKVNLPKYAGPEQRYCPAGVYEYVEDEEpgGPRLQINAQNCVHCKT 80

                          90       100
                  ....*....|....*....|....
gi 1140806625 520 CDIKDPSQNITWTPPEGGGGPNYP 543
Cdd:pfam05187  81 CDIKDPTQNITWVVPEGGGGPNYP 104
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
15-372 4.13e-62

Dehydrogenase (flavoprotein) [Energy production and conversion];


:

Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 205.59  E-value: 4.13e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  15 AGPAGLSAACRIKQlameknQEISVCVVEKGSEVGAHILSGAVFeTRSLEELFPDWEamDAPLNTKVNQDKTYYLSNEln 94
Cdd:COG0644     1 AGPAGSAAARRLAR------AGLSVLLLEKGSFPGDKICGGGLL-PRALEELEPLGL--DEPLERPVRGARFYSPGGK-- 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  95 GHELPTWavpntlhNEGNYIISLGSLCRWMANEAENLGVEIYPGFSASQAIFDEqNRVCgVITGDmgldkngeqkanfep 174
Cdd:COG0644    70 SVELPPG-------RGGGYVVDRARFDRWLAEQAEEAGAEVRTGTRVTDVLRDD-GRVV-VRTGD--------------- 125

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 175 GIELRAKFTLFAEGARGHIGKQLINKfnlADDKTPQHYAIGFKELWEVPAEQH-QQGLVVHGLGwplASEATGGSYLYHL 253
Cdd:COG0644   126 GEEIRADYVVDADGARSLLARKLGLK---RRSDEPQDYALAIKEHWELPPLEGvDPGAVEFFFG---EGAPGGYGWVFPL 199

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 254 EGNQVAVGlivdlnytnphlspfdefqrfkhhplieqylkngkrisygaraIAKGGFHSLPTQEfvGGLLIGCDAGTLNG 333
Cdd:COG0644   200 GDGRVSVG-------------------------------------------IPLGGPRPRLVGD--GVLLVGDAAGFVDP 234

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1140806625 334 AKIKGTHTAMKSGMIAAEAVIEAI----LNQSVIADYQSHFKQ 372
Cdd:COG0644   235 LTGEGIHLAMKSGRLAAEAIAEALeggdFSAEALAEYERRLRE 277
 
Name Accession Description Interval E-value
ETF_QO pfam05187
Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S; Electron-transfer ...
 442-543 3.87e-70

Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S; Electron-transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the inner mitochondrial membrane accepts electrons from electron-transfer flavoprotein which is located in the mitochondrial matrix and reduces ubiquinone in the mitochondrial membrane. The two redox centres in the protein, FAD and a [4Fe4S] cluster, are present in a 64-kDa monomer.


Pssm-ID: 461576 [Multi-domain]  Cd Length: 104  Bit Score: 219.79  E-value: 3.87e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 442 GVLSFDRLSSVYLSNIFHEEDQPCHLQLASQRIPIEQNLALYAEPAQRYCPAGVYEIVEGAE--QAELQINAANCIHCKT 519
Cdd:pfam05187   1 GVLTFDRLTSVYLSGTNHEEDQPCHLKLKDPEVPIKVNLPKYAGPEQRYCPAGVYEYVEDEEpgGPRLQINAQNCVHCKT 80

                          90       100
                  ....*....|....*....|....
gi 1140806625 520 CDIKDPSQNITWTPPEGGGGPNYP 543
Cdd:pfam05187  81 CDIKDPTQNITWVVPEGGGGPNYP 104
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
15-372 4.13e-62

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 205.59  E-value: 4.13e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  15 AGPAGLSAACRIKQlameknQEISVCVVEKGSEVGAHILSGAVFeTRSLEELFPDWEamDAPLNTKVNQDKTYYLSNEln 94
Cdd:COG0644     1 AGPAGSAAARRLAR------AGLSVLLLEKGSFPGDKICGGGLL-PRALEELEPLGL--DEPLERPVRGARFYSPGGK-- 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  95 GHELPTWavpntlhNEGNYIISLGSLCRWMANEAENLGVEIYPGFSASQAIFDEqNRVCgVITGDmgldkngeqkanfep 174
Cdd:COG0644    70 SVELPPG-------RGGGYVVDRARFDRWLAEQAEEAGAEVRTGTRVTDVLRDD-GRVV-VRTGD--------------- 125

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 175 GIELRAKFTLFAEGARGHIGKQLINKfnlADDKTPQHYAIGFKELWEVPAEQH-QQGLVVHGLGwplASEATGGSYLYHL 253
Cdd:COG0644   126 GEEIRADYVVDADGARSLLARKLGLK---RRSDEPQDYALAIKEHWELPPLEGvDPGAVEFFFG---EGAPGGYGWVFPL 199

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 254 EGNQVAVGlivdlnytnphlspfdefqrfkhhplieqylkngkrisygaraIAKGGFHSLPTQEfvGGLLIGCDAGTLNG 333
Cdd:COG0644   200 GDGRVSVG-------------------------------------------IPLGGPRPRLVGD--GVLLVGDAAGFVDP 234

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1140806625 334 AKIKGTHTAMKSGMIAAEAVIEAI----LNQSVIADYQSHFKQ 372
Cdd:COG0644   235 LTGEGIHLAMKSGRLAAEAIAEALeggdFSAEALAEYERRLRE 277
FixX COG2440
Ferredoxin-like protein FixX [Energy production and conversion];
452-545 2.24e-44

Ferredoxin-like protein FixX [Energy production and conversion];


Pssm-ID: 441981 [Multi-domain]  Cd Length: 87  Bit Score: 151.51  E-value: 2.24e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 452 VYLSNIFHEEDQPcHLQLASQRIPIEQNLAlyaEPAQRYCPAGVYEIVEGAEqaeLQINAANCIHCKTCDIKDPSQNITW 531
Cdd:COG2440     1 LFLNNYNVDEDQP-HIKVKDPDICIARCLA---KPCTRYCPAGVYEIVGDGR---LQINYENCLECGTCRIKCPTQNITW 73

                          90
                  ....*....|....
gi 1140806625 532 TPPEGGGGPNYPNM 545
Cdd:COG2440    74 VYPEGGGGVNYRFG 87
PRK10015 PRK10015
oxidoreductase; Provisional
 7-383 2.91e-33

oxidoreductase; Provisional


Pssm-ID: 182194 [Multi-domain]  Cd Length: 429  Bit Score: 131.64  E-value: 2.91e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625   7 EFDVLIVGAGPAGLSAAcrikqLAMEKnQEISVCVVEKGSEVGAHILSGAVFETRSLEELFPDWeAMDAPLNTKVNQDKT 86
Cdd:PRK10015    5 KFDAIVVGAGVAGSVAA-----LVMAR-AGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGF-AASAPVERKVTREKI 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  87 YYLSNE----LNGHELPTWAVPNTlhnegNYIISLGSLCRWMANEAENLGVEIYPGFSASqAIFDEQNRVCGVITGDMGL 162
Cdd:PRK10015   78 SFLTEEsavtLDFHREQPDVPQHA-----SYTVLRNRLDPWLMEQAEQAGAQFIPGVRVD-ALVREGNKVTGVQAGDDIL 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 163 DKNgeqkanfepgielrakFTLFAEGARGHIGKQLinkfNLADDKTPQHYAIGFKELWEVPAEQHQQ--GLVVH-GLGWP 239
Cdd:PRK10015  152 EAN----------------VVILADGVNSMLGRSL----GMVPASDPHHYAVGVKEVIGLTPEQINDrfNITGEeGAAWL 211

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 240 LASEAT----GGSYLYhLEGNQVAVGLIVDL-NYTNPHLSPFDEFQRFKHHPLIEQYLKNGKRISYGARAIAKGGFHSLP 314
Cdd:PRK10015  212 FAGSPSdglmGGGFLY-TNKDSISLGLVCGLgDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVP 290

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1140806625 315 TQEFVGGLLIGCDAG-TLN-GAKIKGTHTAMKSGMIAAEAVIEAILNQ----SVIADYQSHFKQSWLYEELYQAR 383
Cdd:PRK10015  291 QLVNDGVMIVGDAAGfCLNlGFTVRGMDLAIASAQAAATTVIAAKERAdfsaSSLAQYKRELEQSCVMRDMQHFR 365
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 8-353 3.13e-09

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 58.10  E-value: 3.13e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625   8 FDVLIVGAGPAGLSAACRIKQlameknQEISVCVVEKGSEVGAHILSGAVfETRSLEELFPDWEAMdaplntKVNQDKTY 87
Cdd:TIGR02032   1 YDVVVVGAGPAGASAAYRLAD------KGLRVLLLEKKSFPRYKPCGGAL-SPRALEELDLPGELI------VNLVRGAR 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  88 YLSNELNGHELPTwavpntlHNEGNYIISLGSLCRWMANEAENLGVEIYPGFSASQAIFDEQNRVCGVITGdmgldknge 167
Cdd:TIGR02032  68 FFSPNGDSVEIPI-------ETELAYVIDRDAFDEQLAERAQEAGAELRLGTRVLDVEIHDDRVVVIVRGS--------- 131

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 168 qkanfepGIELRAKFTLFAEGARGHIGKQLinkfnladDKTPQHYAIGFKELWEVP---AEQHQQGLVVHgLGWPLASea 244
Cdd:TIGR02032 132 -------EGTVTAKIVIGADGSRSIVAKKL--------GLKKEPREYGVAARAEVEmpdEEVDEDFVEVY-IDRGIVP-- 193

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 245 tgGSYLYHL-EGNQVA-VGLIVDLNYTNPHLSP-FDEF-QRFKhhplieqYLKNGKRISYGARAIAKGGfhslPTQEFVG 320
Cdd:TIGR02032 194 --GGYGWVFpKGDGTAnVGVGSRSAEEGEDPKKyLKDFlARRP-------ELKDAETVEVCGALIPIGR----PDEKLVR 260

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1140806625 321 G--LLIGCDAGTLNGAKIKGTHTAMKSGMIAAEAV 353
Cdd:TIGR02032 261 GnvLLVGDAAGHVNPLTGEGIYYAMRSGDIAAEVV 295
FAD_binding_3 pfam01494
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
 7-197 3.25e-07

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.


Pssm-ID: 396193 [Multi-domain]  Cd Length: 348  Bit Score: 52.33  E-value: 3.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625   7 EFDVLIVGAGPAGLSAAcriKQLAMeknQEISVCVVEKGSEvgAHILS-GAVFETRSLEeLFPD---WEAMDAPLNTKVN 82
Cdd:pfam01494   1 ETDVLIVGGGPAGLMLA---LLLAR---AGVRVVLVERHAT--TSVLPrAHGLNQRTME-LLRQaglEDRILAEGVPHEG 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  83 QDKTYYLS------NELNGHELPTWaVPNTLhnegnyiislgsLCRWMANEAENLGVEIYpgFSAS-QAIFDEQNRVCGV 155
Cdd:pfam01494  72 MGLAFYNTrrradlDFLTSPPRVTV-YPQTE------------LEPILVEHAEARGAQVR--FGTEvLSLEQDGDGVTAV 136

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1140806625 156 ITGDmgldKNGEQKanfepgiELRAKFTLFAEGARGHIGKQL 197
Cdd:pfam01494 137 VRDR----RDGEEY-------TVRAKYLVGCDGGRSPVRKTL 167
 
Name Accession Description Interval E-value
ETF_QO pfam05187
Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S; Electron-transfer ...
 442-543 3.87e-70

Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S; Electron-transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the inner mitochondrial membrane accepts electrons from electron-transfer flavoprotein which is located in the mitochondrial matrix and reduces ubiquinone in the mitochondrial membrane. The two redox centres in the protein, FAD and a [4Fe4S] cluster, are present in a 64-kDa monomer.


Pssm-ID: 461576 [Multi-domain]  Cd Length: 104  Bit Score: 219.79  E-value: 3.87e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 442 GVLSFDRLSSVYLSNIFHEEDQPCHLQLASQRIPIEQNLALYAEPAQRYCPAGVYEIVEGAE--QAELQINAANCIHCKT 519
Cdd:pfam05187   1 GVLTFDRLTSVYLSGTNHEEDQPCHLKLKDPEVPIKVNLPKYAGPEQRYCPAGVYEYVEDEEpgGPRLQINAQNCVHCKT 80

                          90       100
                  ....*....|....*....|....
gi 1140806625 520 CDIKDPSQNITWTPPEGGGGPNYP 543
Cdd:pfam05187  81 CDIKDPTQNITWVVPEGGGGPNYP 104
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
15-372 4.13e-62

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 205.59  E-value: 4.13e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  15 AGPAGLSAACRIKQlameknQEISVCVVEKGSEVGAHILSGAVFeTRSLEELFPDWEamDAPLNTKVNQDKTYYLSNEln 94
Cdd:COG0644     1 AGPAGSAAARRLAR------AGLSVLLLEKGSFPGDKICGGGLL-PRALEELEPLGL--DEPLERPVRGARFYSPGGK-- 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  95 GHELPTWavpntlhNEGNYIISLGSLCRWMANEAENLGVEIYPGFSASQAIFDEqNRVCgVITGDmgldkngeqkanfep 174
Cdd:COG0644    70 SVELPPG-------RGGGYVVDRARFDRWLAEQAEEAGAEVRTGTRVTDVLRDD-GRVV-VRTGD--------------- 125

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 175 GIELRAKFTLFAEGARGHIGKQLINKfnlADDKTPQHYAIGFKELWEVPAEQH-QQGLVVHGLGwplASEATGGSYLYHL 253
Cdd:COG0644   126 GEEIRADYVVDADGARSLLARKLGLK---RRSDEPQDYALAIKEHWELPPLEGvDPGAVEFFFG---EGAPGGYGWVFPL 199

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 254 EGNQVAVGlivdlnytnphlspfdefqrfkhhplieqylkngkrisygaraIAKGGFHSLPTQEfvGGLLIGCDAGTLNG 333
Cdd:COG0644   200 GDGRVSVG-------------------------------------------IPLGGPRPRLVGD--GVLLVGDAAGFVDP 234

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1140806625 334 AKIKGTHTAMKSGMIAAEAVIEAI----LNQSVIADYQSHFKQ 372
Cdd:COG0644   235 LTGEGIHLAMKSGRLAAEAIAEALeggdFSAEALAEYERRLRE 277
FixX COG2440
Ferredoxin-like protein FixX [Energy production and conversion];
452-545 2.24e-44

Ferredoxin-like protein FixX [Energy production and conversion];


Pssm-ID: 441981 [Multi-domain]  Cd Length: 87  Bit Score: 151.51  E-value: 2.24e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 452 VYLSNIFHEEDQPcHLQLASQRIPIEQNLAlyaEPAQRYCPAGVYEIVEGAEqaeLQINAANCIHCKTCDIKDPSQNITW 531
Cdd:COG2440     1 LFLNNYNVDEDQP-HIKVKDPDICIARCLA---KPCTRYCPAGVYEIVGDGR---LQINYENCLECGTCRIKCPTQNITW 73

                          90
                  ....*....|....
gi 1140806625 532 TPPEGGGGPNYPNM 545
Cdd:COG2440    74 VYPEGGGGVNYRFG 87
PRK10015 PRK10015
oxidoreductase; Provisional
 7-383 2.91e-33

oxidoreductase; Provisional


Pssm-ID: 182194 [Multi-domain]  Cd Length: 429  Bit Score: 131.64  E-value: 2.91e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625   7 EFDVLIVGAGPAGLSAAcrikqLAMEKnQEISVCVVEKGSEVGAHILSGAVFETRSLEELFPDWeAMDAPLNTKVNQDKT 86
Cdd:PRK10015    5 KFDAIVVGAGVAGSVAA-----LVMAR-AGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGF-AASAPVERKVTREKI 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  87 YYLSNE----LNGHELPTWAVPNTlhnegNYIISLGSLCRWMANEAENLGVEIYPGFSASqAIFDEQNRVCGVITGDMGL 162
Cdd:PRK10015   78 SFLTEEsavtLDFHREQPDVPQHA-----SYTVLRNRLDPWLMEQAEQAGAQFIPGVRVD-ALVREGNKVTGVQAGDDIL 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 163 DKNgeqkanfepgielrakFTLFAEGARGHIGKQLinkfNLADDKTPQHYAIGFKELWEVPAEQHQQ--GLVVH-GLGWP 239
Cdd:PRK10015  152 EAN----------------VVILADGVNSMLGRSL----GMVPASDPHHYAVGVKEVIGLTPEQINDrfNITGEeGAAWL 211

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 240 LASEAT----GGSYLYhLEGNQVAVGLIVDL-NYTNPHLSPFDEFQRFKHHPLIEQYLKNGKRISYGARAIAKGGFHSLP 314
Cdd:PRK10015  212 FAGSPSdglmGGGFLY-TNKDSISLGLVCGLgDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVP 290

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1140806625 315 TQEFVGGLLIGCDAG-TLN-GAKIKGTHTAMKSGMIAAEAVIEAILNQ----SVIADYQSHFKQSWLYEELYQAR 383
Cdd:PRK10015  291 QLVNDGVMIVGDAAGfCLNlGFTVRGMDLAIASAQAAATTVIAAKERAdfsaSSLAQYKRELEQSCVMRDMQHFR 365
PRK10157 PRK10157
putative oxidoreductase FixC; Provisional
 8-381 2.56e-25

putative oxidoreductase FixC; Provisional


Pssm-ID: 182273 [Multi-domain]  Cd Length: 428  Bit Score: 108.46  E-value: 2.56e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625   8 FDVLIVGAGPAGLSAACrikQLAMEKNQeisVCVVEKGSEVGAHILSGAVFETRSLEELFPDWeAMDAPLNTKVNQDKTY 87
Cdd:PRK10157    6 FDAIIVGAGLAGSVAAL---VLAREGAQ---VLVIERGNSAGAKNVTGGRLYAHSLEHIIPGF-ADSAPVERLITHEKLA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  88 YLSNE-------LNGHElptwAVPNtlhnEGNYIISLGSLCRWMANEAENLGVEIYPGFSASQAIfDEQNRVCGV-ITGD 159
Cdd:PRK10157   79 FMTEKsamtmdyCNGDE----TSPS----QRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLV-QRDGKVVGVeADGD 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 160 MgldkngeqkanfepgieLRAKFTLFAEGarghIGKQLINKFNLADDKTPQHYAIGFKELWEVPA---EQHQQGLVVHGL 236
Cdd:PRK10157  150 V-----------------IEAKTVILADG----VNSILAEKLGMAKRVKPTDVAVGVKELIELPKsviEDRFQLQGNQGA 208

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 237 GWPLASEAT----GGSYLYHLEgNQVAVGLIVDLNYTNPHLSPFDE-FQRFKHHPLIEQYLKNGKRISYGARAIAKGGFH 311
Cdd:PRK10157  209 ACLFAGSPTdglmGGGFLYTNE-NTLSLGLVCGLHHLHDAKKSVPQmLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGIN 287

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1140806625 312 SLPtqEFVG-GLLIGCDAGTLN---GAKIKGTHTAMKSGMIAAEAVIEAI----LNQSVIADYQSHFKQSWLYE-ELYQ 381
Cdd:PRK10157  288 MLP--ELVGdGVLIAGDAAGMCmnlGFTIRGMDLAIAAGEAAAKTVLSAMksddFSKQKLAEYRQHLESGPLRDmRMYQ 364
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 6-197 4.85e-10

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 61.11  E-value: 4.85e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625   6 MEFDVLIVGAGPAGLSAACRIKQlameknQEISVCVVEKGSEVGAHIlSGAVFETRSLEELfpD----WEAMDAplntKV 81
Cdd:COG0654     2 MRTDVLIVGGGPAGLALALALAR------AGIRVTVVERAPPPRPDG-RGIALSPRSLELL--RrlglWDRLLA----RG 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  82 NQDKTYYLSNELNGHELPTWAVPNTLHNEGnYIISLGSLCRWMANEAENLGVEIYPGfsasqaifdeqNRVCGVITGDMG 161
Cdd:COG0654    69 APIRGIRVRDGSDGRVLARFDAAETGLPAG-LVVPRADLERALLEAARALGVELRFG-----------TEVTGLEQDADG 136

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1140806625 162 LDkngeqkANFEPGIELRAKFTLFAEGARGHIGKQL 197
Cdd:COG0654   137 VT------VTLADGRTLRADLVVGADGARSAVRRLL 166
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 8-353 3.13e-09

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 58.10  E-value: 3.13e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625   8 FDVLIVGAGPAGLSAACRIKQlameknQEISVCVVEKGSEVGAHILSGAVfETRSLEELFPDWEAMdaplntKVNQDKTY 87
Cdd:TIGR02032   1 YDVVVVGAGPAGASAAYRLAD------KGLRVLLLEKKSFPRYKPCGGAL-SPRALEELDLPGELI------VNLVRGAR 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  88 YLSNELNGHELPTwavpntlHNEGNYIISLGSLCRWMANEAENLGVEIYPGFSASQAIFDEQNRVCGVITGdmgldknge 167
Cdd:TIGR02032  68 FFSPNGDSVEIPI-------ETELAYVIDRDAFDEQLAERAQEAGAELRLGTRVLDVEIHDDRVVVIVRGS--------- 131

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 168 qkanfepGIELRAKFTLFAEGARGHIGKQLinkfnladDKTPQHYAIGFKELWEVP---AEQHQQGLVVHgLGWPLASea 244
Cdd:TIGR02032 132 -------EGTVTAKIVIGADGSRSIVAKKL--------GLKKEPREYGVAARAEVEmpdEEVDEDFVEVY-IDRGIVP-- 193

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625 245 tgGSYLYHL-EGNQVA-VGLIVDLNYTNPHLSP-FDEF-QRFKhhplieqYLKNGKRISYGARAIAKGGfhslPTQEFVG 320
Cdd:TIGR02032 194 --GGYGWVFpKGDGTAnVGVGSRSAEEGEDPKKyLKDFlARRP-------ELKDAETVEVCGALIPIGR----PDEKLVR 260

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1140806625 321 G--LLIGCDAGTLNGAKIKGTHTAMKSGMIAAEAV 353
Cdd:TIGR02032 261 GnvLLVGDAAGHVNPLTGEGIYYAMRSGDIAAEVV 295
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
 6-188 5.56e-09

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 58.31  E-value: 5.56e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625   6 MEFDVLIVGAGPAGLSAACRIKQlameknQEISVCVVEKGSEVGAH-ILSGAVF---ETRSLEELFPD-WEAM----DAP 76
Cdd:COG1053     2 HEYDVVVVGSGGAGLRAALEAAE------AGLKVLVLEKVPPRGGHtAAAQGGInaaGTNVQKAAGEDsPEEHfydtVKG 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  77 LNTKVNQDKTYYLSNE-----------------LNGHELPTW---AVPNTLH---NEGNYIIslgslcRWMANEAENLGV 133
Cdd:COG1053    76 GDGLADQDLVEALAEEapeaidwleaqgvpfsrTPDGRLPQFgghSVGRTCYagdGTGHALL------ATLYQAALRLGV 149

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1140806625 134 EIYPGFSASQAIFDEqNRVCGVItgdmGLDKNGEQkanfepgIELRAKFTLFAEG 188
Cdd:COG1053   150 EIFTETEVLDLIVDD-GRVVGVV----ARDRTGEI-------VRIRAKAVVLATG 192
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 7-49 1.75e-07

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 53.71  E-value: 1.75e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1140806625   7 EFDVLIVGAGPAGLSAACRIKQlameknQEISVCVVEKGSEVG 49
Cdd:COG2072     6 HVDVVVIGAGQAGLAAAYHLRR------AGIDFVVLEKADDVG 42
FAD_binding_3 pfam01494
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
 7-197 3.25e-07

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.


Pssm-ID: 396193 [Multi-domain]  Cd Length: 348  Bit Score: 52.33  E-value: 3.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625   7 EFDVLIVGAGPAGLSAAcriKQLAMeknQEISVCVVEKGSEvgAHILS-GAVFETRSLEeLFPD---WEAMDAPLNTKVN 82
Cdd:pfam01494   1 ETDVLIVGGGPAGLMLA---LLLAR---AGVRVVLVERHAT--TSVLPrAHGLNQRTME-LLRQaglEDRILAEGVPHEG 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  83 QDKTYYLS------NELNGHELPTWaVPNTLhnegnyiislgsLCRWMANEAENLGVEIYpgFSAS-QAIFDEQNRVCGV 155
Cdd:pfam01494  72 MGLAFYNTrrradlDFLTSPPRVTV-YPQTE------------LEPILVEHAEARGAQVR--FGTEvLSLEQDGDGVTAV 136

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1140806625 156 ITGDmgldKNGEQKanfepgiELRAKFTLFAEGARGHIGKQL 197
Cdd:pfam01494 137 VRDR----RDGEEY-------TVRAKYLVGCDGGRSPVRKTL 167
FAD_binding_2 pfam00890
FAD binding domain; This family includes members that bind FAD. This family includes the ...
 9-198 5.94e-07

FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.


Pssm-ID: 395718 [Multi-domain]  Cd Length: 398  Bit Score: 51.90  E-value: 5.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625   9 DVLIVGAGPAGLSAACRIKQlameknQEISVCVVEKGSEVGAHI----------LSGAVFETRSLEELFPDW-------- 70
Cdd:pfam00890   1 DVLVIGGGLAGLAAALAAAE------AGLKVAVVEKGQPFGGATawssggidalGNPPQGGIDSPELHPTDTlkgldela 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  71 -------------------EAMDAPLNTkvNQDKTYYLSnELNGHeLPTWAVPNTLHNEGNYIISLGSLCRWMANEAENL 131
Cdd:pfam00890  75 dhpyveafveaapeavdwlEALGVPFSR--TEDGHLDLR-PLGGL-SATWRTPHDAADRRRGLGTGHALLARLLEGLRKA 150

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1140806625 132 GVEIYPGFSASQAIFDEQnRVCGVItgdMGLDKNGEQkanfepgIELRAKF-TLFAEGARGHIGKQLI 198
Cdd:pfam00890 151 GVDFQPRTAADDLIVEDG-RVTGAV---VENRRNGRE-------VRIRAIAaVLLATGGFGRLAELLL 207
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 6-49 4.20e-06

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 49.46  E-value: 4.20e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1140806625   6 MEFDVLIVGAGPAGLSAACRikqLAMEKnqeISVCVVEKGSEVG 49
Cdd:COG1233     2 MMYDVVVIGAGIGGLAAAAL---LARAG---YRVTVLEKNDTPG 39
Thi4 pfam01946
Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.
 4-225 4.35e-05

Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.


Pssm-ID: 460393  Cd Length: 232  Bit Score: 45.16  E-value: 4.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625   4 DCMEFDVLIVGAGPAGLSAACRIKqlameKNQEISVCVVEKGSEVGAHILSGAvfetrsleELFPdweAMdaplntkVNQ 83
Cdd:pfam01946  14 DYAESDVVIVGAGSSGLTAAYYLA-----KNRGLKVAIIERSVSPGGGAWLGG--------QLFS---AM-------VVR 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  84 DKTYYLSNELnghelptwAVPNTlhNEGNYII---SLGSLCRWMANEAENLGVEIYPGFSASQAIFDEQNRVCGVITGDM 160
Cdd:pfam01946  71 KPAHLFLDEF--------GIPYE--DEGDYVVvkhAALFTSTLMSKALQLPNVKLFNATSVEDLIVRPGVGVAGVVTNWT 140

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1140806625 161 GLDKNGeqkANFEPGIeLRAKFTLFAEGARGHIGKQLINKFNLAddkTPQHYAIGFKELWEVPAE 225
Cdd:pfam01946 141 LVEQAG---LHMDPNT-IRAKVVVSATGHDGPFGAFCVKRIKLI---QQIQKVPGMKSLDMNVAE 198
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 6-45 5.18e-05

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 45.94  E-value: 5.18e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1140806625   6 MEFDVLIVGAGPAGLSAACRIKQLAMeknqeiSVCVVEKG 45
Cdd:PRK06292    2 EKYDVIVIGAGPAGYVAARRAAKLGK------KVALIEKG 35
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 9-157 5.69e-05

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 45.47  E-value: 5.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625   9 DVLIVGAGPAGLSAACrikQLAMEKnqeISVCVVEKGSEVGAH-------ILSGAVFETRSLE------ELFPDWEAMDA 75
Cdd:pfam01266   1 DVVVIGGGIVGLSTAY---ELARRG---LSVTLLERGDDPGSGasgrnagLIHPGLRYLEPSElarlalEALDLWEELEE 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  76 PLNTKV--NQDKTYYLSNELNGHELPTWA---------------------VPNT------LHNEGNYIISLGSLCRWMAN 126
Cdd:pfam01266  75 ELGIDCgfRRCGVLVLARDEEEEALEKLLaalrrlgvpaelldaeelrelEPLLpglrggLFYPDGGHVDPARLLRALAR 154

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1140806625 127 EAENLGVEIYPGFSASQaiFDEQNRVCGVIT 157
Cdd:pfam01266 155 AAEALGVRIIEGTEVTG--IEEEGGVWGVVT 183
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
6-83 7.10e-05

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 45.62  E-value: 7.10e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1140806625   6 MEFDVLIVGAGPAGLSAAcriKQLAmekNQEISVCVVEKGSEVGAHilsgavfeTRSLEELFPDWEAMDAPLNTKVNQ 83
Cdd:COG1148   139 VNKRALVIGGGIAGMTAA---LELA---EQGYEVYLVEKEPELGGR--------AAQLHKTFPGLDCPQCILEPLIAE 202
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
6-51 8.12e-05

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 45.14  E-value: 8.12e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1140806625   6 MEFDVLIVGAGPAGLSAACRIKQLameknQEISVCVVEKGSEVGAH 51
Cdd:COG0579     3 EMYDVVIIGAGIVGLALARELSRY-----EDLKVLVLEKEDDVAQE 43
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
12-57 1.11e-04

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 40.21  E-value: 1.11e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1140806625  12 IVGAGPAGLSAACRIKQlameknQEISVCVVEKGSEVGAHILSGAV 57
Cdd:pfam13450   1 IVGAGLAGLVAAALLAK------RGFRVLVLEKRDRLGGNAYSYRV 40
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 9-49 1.22e-04

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 44.44  E-value: 1.22e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1140806625   9 DVLIVGAGPAGLSAACRIKQlameknQEISVCVVEKGSEVG 49
Cdd:COG1232     3 RVAVIGGGIAGLTAAYRLAK------AGHEVTVLEASDRVG 37
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
8-49 2.60e-04

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 43.18  E-value: 2.60e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1140806625   8 FDVLIVGAGPAGLSAAcrIkQLAMEKnqeISVCVVEKGsEVG 49
Cdd:COG0492     1 YDVVIIGAGPAGLTAA--I-YAARAG---LKTLVIEGG-EPG 35
PRK08294 PRK08294
phenol 2-monooxygenase; Provisional
 7-44 2.83e-04

phenol 2-monooxygenase; Provisional


Pssm-ID: 236223 [Multi-domain]  Cd Length: 634  Bit Score: 43.82  E-value: 2.83e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1140806625   7 EFDVLIVGAGPAGLSAACrikQLAMEKnqEISVCVVEK 44
Cdd:PRK08294   32 EVDVLIVGCGPAGLTLAA---QLSAFP--DITTRIVER 64
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 6-45 2.86e-04

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 43.54  E-value: 2.86e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1140806625   6 MEFDVLIVGAGPAGLSAACRIKQLAMeknqeiSVCVVEKG 45
Cdd:COG1249     2 KDYDLVVIGAGPGGYVAAIRAAQLGL------KVALVEKG 35
PRK06854 PRK06854
adenylyl-sulfate reductase subunit alpha;
6-156 3.43e-04

adenylyl-sulfate reductase subunit alpha;


Pssm-ID: 235879 [Multi-domain]  Cd Length: 608  Bit Score: 43.37  E-value: 3.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625   6 MEFDVLIVGAGPAGLSAACRIKqlamEKNQEISVCVVEKgsevgAHIL-SGAV-----------FETRSLEElFPDWEAM 73
Cdd:PRK06854   10 VDTDILIIGGGMAGCGAAFEAK----EWAPDLKVLIVEK-----ANIKrSGAVaqglsainayiGEGETPED-YVRYVRK 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  74 DapLNTKVNQDKTYYLSNELNG--HELPTWAVPNTLHNEGNYIISlGslcRW------------MANEAEN-LGVEIYPG 138
Cdd:PRK06854   80 D--LMGIVREDLVYDIARHVDSvvHLFEEWGLPIWKDENGKYVRR-G---RWqimingesykpiVAEAAKKaLGDNVLNR 153

                         170
                  ....*....|....*...
gi 1140806625 139 FSASQAIFDEqNRVCGVI 156
Cdd:PRK06854  154 VFITDLLVDD-NRIAGAV 170
COG3380 COG3380
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];
6-49 3.76e-04

Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];


Pssm-ID: 442607 [Multi-domain]  Cd Length: 331  Bit Score: 42.94  E-value: 3.76e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1140806625   6 MEFDVLIVGAGPAGLSAACRIKQlameknQEISVCVVEKGSEVG 49
Cdd:COG3380     2 SMPDIAIIGAGIAGLAAARALQD------AGHEVTVFEKSRGVG 39
PRK09126 PRK09126
FAD-dependent hydroxylase;
6-47 4.36e-04

FAD-dependent hydroxylase;


Pssm-ID: 236385 [Multi-domain]  Cd Length: 392  Bit Score: 42.62  E-value: 4.36e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1140806625   6 MEFDVLIVGAGPAGLSAAcrikqLAMEKNQeISVCVVEKGSE 47
Cdd:PRK09126    2 MHSDIVVVGAGPAGLSFA-----RSLAGSG-LKVTLIERQPL 37
COG2509 COG2509
FAD-dependent dehydrogenase [General function prediction only];
6-48 7.32e-04

FAD-dependent dehydrogenase [General function prediction only];


Pssm-ID: 441999 [Multi-domain]  Cd Length: 466  Bit Score: 42.02  E-value: 7.32e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1140806625   6 MEFDVLIVGAGPAGLSAACRIKQLameknqEISVCVVEKGSEV 48
Cdd:COG2509    29 LKYDVVIVGAGPAGLFAALELAEA------GLKPLVLERGKDV 65
PLN02568 PLN02568
polyamine oxidase
 10-78 8.30e-04

polyamine oxidase


Pssm-ID: 215308 [Multi-domain]  Cd Length: 539  Bit Score: 42.12  E-value: 8.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140806625  10 VLIVGAGPAGLSAACRIKQlAMEKNQEISVCVVEKGSEVGAHILS----------GAVF--------------ETRSLEE 65
Cdd:PLN02568    8 IVIIGAGMAGLTAANKLYT-SSAANDMFELTVVEGGDRIGGRINTsefggeriemGATWihgiggspvykiaqEAGSLES 86

                          90
                  ....*....|...
gi 1140806625  66 LFPdWEAMDAPLN 78
Cdd:PLN02568   87 DEP-WECMDGFPD 98
PRK06416 PRK06416
dihydrolipoamide dehydrogenase; Reviewed
 6-45 8.78e-04

dihydrolipoamide dehydrogenase; Reviewed


Pssm-ID: 235798 [Multi-domain]  Cd Length: 462  Bit Score: 42.06  E-value: 8.78e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1140806625   6 MEFDVLIVGAGPAGLSAACRIKQLAMeknqeiSVCVVEKG 45
Cdd:PRK06416    3 FEYDVIVIGAGPGGYVAAIRAAQLGL------KVAIVEKE 36
PRK07208 PRK07208
hypothetical protein; Provisional
 9-49 1.20e-03

hypothetical protein; Provisional


Pssm-ID: 235967 [Multi-domain]  Cd Length: 479  Bit Score: 41.41  E-value: 1.20e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1140806625   9 DVLIVGAGPAGLSAACrikQLAmekNQEISVCVVEKGSEVG 49
Cdd:PRK07208    6 SVVIIGAGPAGLTAAY---ELL---KRGYPVTVLEADPVVG 40
BetA COG2303
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ...
 6-45 1.52e-03

Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441878 [Multi-domain]  Cd Length: 531  Bit Score: 41.35  E-value: 1.52e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1140806625   6 MEFDVLIVGAGPAGLSAACRikqLAmeKNQEISVCVVEKG 45
Cdd:COG2303     3 EEYDYVIVGAGSAGCVLANR---LS--EDAGLRVLLLEAG 37
PLN02976 PLN02976
amine oxidase
 2-62 1.70e-03

amine oxidase


Pssm-ID: 215527 [Multi-domain]  Cd Length: 1713  Bit Score: 41.39  E-value: 1.70e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1140806625    2 ERDCMEFD------VLIVGAGPAGLSAACRIKQlameknQEISVCVVEKGSEVGahilsGAVFETRS 62
Cdd:PLN02976   682 GNHCVLCDsvdrkkIIVVGAGPAGLTAARHLQR------QGFSVTVLEARSRIG-----GRVYTDRS 737
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
1-59 2.58e-03

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 40.29  E-value: 2.58e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1140806625   1 MERDCMEFDVLIVGAGPAGLSAACRIKQLameknqEISVCVVEKGSEVGAHILS------GAVFE 59
Cdd:COG1231     1 MSRRARGKDVVIVGAGLAGLAAARELRKA------GLDVTVLEARDRVGGRVWTlrfgddGLYAE 59
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 10-49 2.63e-03

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 40.50  E-value: 2.63e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1140806625  10 VLIVGAGPAGLSAACrikQLAMEKnqeISVCVVEKGSEVG 49
Cdd:COG0493   124 VAVVGSGPAGLAAAY---QLARAG---HEVTVFEALDKPG 157
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 489-520 3.46e-03

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 36.26  E-value: 3.46e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1140806625 489 RYCPAGVYEIVEGAEQAELQINAANCIHCKTC 520
Cdd:COG1143    12 RVCPVDAITIEDGEPGKVYVIDPDKCIGCGLC 43
HI0933_like pfam03486
HI0933-like protein;
8-55 3.95e-03

HI0933-like protein;


Pssm-ID: 427330 [Multi-domain]  Cd Length: 406  Bit Score: 39.87  E-value: 3.95e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1140806625   8 FDVLIVGAGPAGLSAACRIKQLameknqEISVCVVEKGSEVGAHIL-SG 55
Cdd:pfam03486   1 FDVIVIGGGAAGLMAAISAAKR------GRRVLLIEKGKKLGRKILiSG 43
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 8-83 4.82e-03

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 39.22  E-value: 4.82e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1140806625   8 FDVLIVGAGPAGLSAACRIKQLAMEknqeisVCVVEKGSEV--GAHILSGAVFETRSLEELFPDWEAMDAPLNTKVNQ 83
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTLAQLGGK------VTLIEDEGTCpyGGCVLSKALLGAAEAPEIASLWADLYKRKEEVVKK 72
NadB COG0029
Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the ...
 6-46 5.60e-03

Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the Pathway/BioSystem: NAD biosynthesis


Pssm-ID: 439800 [Multi-domain]  Cd Length: 521  Bit Score: 39.32  E-value: 5.60e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1140806625   6 MEFDVLIVGAGPAGLSAACRIKQLAmeknqeiSVCVVEKGS 46
Cdd:COG0029     3 LKTDVLVIGSGIAGLSAALKLAERG-------RVTLLTKGE 36
PRK05329 PRK05329
glycerol-3-phosphate dehydrogenase subunit GlpB;
6-25 6.17e-03

glycerol-3-phosphate dehydrogenase subunit GlpB;


Pssm-ID: 235412  Cd Length: 422  Bit Score: 39.06  E-value: 6.17e-03
                          10        20
                  ....*....|....*....|
gi 1140806625   6 MEFDVLIVGAGPAGLSAACR 25
Cdd:PRK05329    1 MKFDVLVIGGGLAGLTAALA 20
YdhS COG4529
Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];
1-62 6.17e-03

Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];


Pssm-ID: 443597 [Multi-domain]  Cd Length: 466  Bit Score: 39.17  E-value: 6.17e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1140806625   1 MERDCMefDVLIVGAGPAGLSAAcriKQLAMEKNQEISVCVVEKGSEVGAhilsGAVFETRS 62
Cdd:COG4529     1 MTGARK--RIAIIGGGASGTALA---IHLLRRAPEPLRITLFEPRPELGR----GVAYSTDS 53
GlpB COG3075
Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism];
6-25 8.18e-03

Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism];


Pssm-ID: 442309  Cd Length: 415  Bit Score: 38.62  E-value: 8.18e-03
                          10        20
                  ....*....|....*....|
gi 1140806625   6 MEFDVLIVGAGPAGLSAACR 25
Cdd:COG3075     1 MKFDVVVIGGGLAGLTAAIR 20
YhiN COG2081
Predicted flavoprotein YhiN [General function prediction only];
11-55 9.20e-03

Predicted flavoprotein YhiN [General function prediction only];


Pssm-ID: 441684 [Multi-domain]  Cd Length: 402  Bit Score: 38.49  E-value: 9.20e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1140806625  11 LIVGAGPAGLSAACRIKQlameknQEISVCVVEKGSEVGAHIL-SG 55
Cdd:COG2081     1 IVIGAGAAGLMAAITAAE------RGARVLLLEKNPKVGRKILiSG 40
PRK15317 PRK15317
alkyl hydroperoxide reductase subunit F; Provisional
 8-23 9.95e-03

alkyl hydroperoxide reductase subunit F; Provisional


Pssm-ID: 237942 [Multi-domain]  Cd Length: 517  Bit Score: 38.60  E-value: 9.95e-03
                          10
                  ....*....|....*.
gi 1140806625   8 FDVLIVGAGPAGLSAA 23
Cdd:PRK15317  212 YDVLVVGGGPAGAAAA 227
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH