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Conserved domains on  [gi|1143560112|ref|WP_077140463|]
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nucleotidyltransferase family protein [Abyssicoccus albus]

Protein Classification

nucleotidyltransferase family protein( domain architecture ID 11442496)

nucleotidyltransferase family protein such as tRNA(Met) cytidine acetate ligase (TmcAL) that catalyzes the formation of ac4C34, the N4-acetylcytidine (ac4C) at the anticodon first position (position 34) of elongator tRNAMet, using acetate and ATP as substrates; nucleotidyltransferase family protein such as tRNA(Met) cytidine acetate ligase that catalyzes the formation of ac4C34, the N4-acetylcytidine (ac4C) at the anticodon first position (position 34) of elongator tRNAMet, using acetate and ATP as co-substrates

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TmcAL COG1323
tRNA-Met C34-N4-acetylcytidine synthase TmcAL [Translation, ribosomal structure and biogenesis] ...
 2-385 1.05e-147

tRNA-Met C34-N4-acetylcytidine synthase TmcAL [Translation, ribosomal structure and biogenesis]; tRNA-Met C34-N4-acetylcytidine synthase TmcAL is part of the Pathway/BioSystem: tRNA modification


:

Pssm-ID: 440934  Cd Length: 401  Bit Score: 424.21  E-value: 1.05e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112   2 MNALGIISEYNPFHNGHLYQIQCARQDHPDSVIIALMSGDFTQRGELACLSKFDRTRTVLPH-VDLVIELPHQFAIQSAQ 80
Cdd:COG1323     1 MKAVGIIAEYNPFHNGHLYHIEEAKKLTGADVVIAVMSGNFVQRGEPAILDKWARAKMALKNgVDLVIELPVVFAVQSAE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112  81 YFAQGAIEALRHLN-VSTLSFGSESGSIDQLTKIAKklhIINEEYKNDKHEVISYMRRGNTYAQSMNQLLDNQFND---- 155
Cdd:COG1323    81 YFAYGAVSLLDALGvVDHLCFGSESGDIELLKEIAK---ILIEEPEEFKELLKKYLKKGLSYPKARSLALEELLGDelae 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 156 ---TPNDILATQYIYHNMMLDQPMTLHTVQRKTSHHHNKKLTkDPFTSGTSIRNNWSTqidqnpNNTVNLSQYVPPSTYQ 232
Cdd:COG1323   158 dlsSPNNILGLEYLKALKKLNSPIKPLTIKRIGAGYHDEELT-GKIASATAIRKALLE------GDLEKLKNYVPPATYE 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 233 FIQKQK-----PNSNDLFLPYILFTLERINYEDLMRIHLMKEDFAHRLikyKQQMRHIESFDALCLLLKSKNYTYTFIQR 307
Cdd:COG1323   231 ILKEEIkegrgPVSWEDFFPLLLYKLLTSSPEELANIYDVSEGLENRI---KKAARKAGSFEELIELIKTKRYTWTRIQR 307

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 308 MLIHIMLNIQTID-------EIKGLRVLGMNQKGRKYLKQL--NSDIEIITNVNKQNKHLIRQNIESTNMYNFITKHKE- 377
Cdd:COG1323   308 ILLHILLGITKDDlesflkkGPPYIRVLGFNKKGRELLKEIkkKASLPIITKVSKYKKSLLELDIRATDLYSLLYPNPKp 387

                         410
                  ....*....|.
gi 1143560112 378 ---NDFNRPVI 385
Cdd:COG1323   388 rkgQDFTRPPI 398
 
Name Accession Description Interval E-value
TmcAL COG1323
tRNA-Met C34-N4-acetylcytidine synthase TmcAL [Translation, ribosomal structure and biogenesis] ...
 2-385 1.05e-147

tRNA-Met C34-N4-acetylcytidine synthase TmcAL [Translation, ribosomal structure and biogenesis]; tRNA-Met C34-N4-acetylcytidine synthase TmcAL is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440934  Cd Length: 401  Bit Score: 424.21  E-value: 1.05e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112   2 MNALGIISEYNPFHNGHLYQIQCARQDHPDSVIIALMSGDFTQRGELACLSKFDRTRTVLPH-VDLVIELPHQFAIQSAQ 80
Cdd:COG1323     1 MKAVGIIAEYNPFHNGHLYHIEEAKKLTGADVVIAVMSGNFVQRGEPAILDKWARAKMALKNgVDLVIELPVVFAVQSAE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112  81 YFAQGAIEALRHLN-VSTLSFGSESGSIDQLTKIAKklhIINEEYKNDKHEVISYMRRGNTYAQSMNQLLDNQFND---- 155
Cdd:COG1323    81 YFAYGAVSLLDALGvVDHLCFGSESGDIELLKEIAK---ILIEEPEEFKELLKKYLKKGLSYPKARSLALEELLGDelae 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 156 ---TPNDILATQYIYHNMMLDQPMTLHTVQRKTSHHHNKKLTkDPFTSGTSIRNNWSTqidqnpNNTVNLSQYVPPSTYQ 232
Cdd:COG1323   158 dlsSPNNILGLEYLKALKKLNSPIKPLTIKRIGAGYHDEELT-GKIASATAIRKALLE------GDLEKLKNYVPPATYE 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 233 FIQKQK-----PNSNDLFLPYILFTLERINYEDLMRIHLMKEDFAHRLikyKQQMRHIESFDALCLLLKSKNYTYTFIQR 307
Cdd:COG1323   231 ILKEEIkegrgPVSWEDFFPLLLYKLLTSSPEELANIYDVSEGLENRI---KKAARKAGSFEELIELIKTKRYTWTRIQR 307

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 308 MLIHIMLNIQTID-------EIKGLRVLGMNQKGRKYLKQL--NSDIEIITNVNKQNKHLIRQNIESTNMYNFITKHKE- 377
Cdd:COG1323   308 ILLHILLGITKDDlesflkkGPPYIRVLGFNKKGRELLKEIkkKASLPIITKVSKYKKSLLELDIRATDLYSLLYPNPKp 387

                         410
                  ....*....|.
gi 1143560112 378 ---NDFNRPVI 385
Cdd:COG1323   388 rkgQDFTRPPI 398
HIGH_NTase1 pfam05636
HIGH Nucleotidyl Transferase; This family consists of HIGH Nucleotidyl Transferases
 10-382 1.72e-118

HIGH Nucleotidyl Transferase; This family consists of HIGH Nucleotidyl Transferases


Pssm-ID: 428556  Cd Length: 386  Bit Score: 349.15  E-value: 1.72e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112  10 EYNPFHNGHLYQIQCARQDHPDSVIIALMSGDFTQRGELACLSKFDRTRTVLPH-VDLVIELPHQFAIQSAQYFAQGAIE 88
Cdd:pfam05636   1 EYNPFHNGHLYHLEQAKELTGADVIIAVMSGNFVQRGEPAIIDKWTRAEMALENgADLVIELPVVYAVQSAEYFAKGAVS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112  89 ALRHLN-VSTLSFGSESGSIDQLTKIAKKLHIINEEYKNDKHEvisYMRRGNTYAQSMNQLLDNQFN------DTPNDIL 161
Cdd:pfam05636  81 LLNALGvVDSLSFGSESGDIELLQKIADILAEEPEEYKELLKE---YLKKGLSYPKAREKALASYLGlilellSSPNNIL 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 162 ATQYIYHNMMLDQPMTLHTVQRKTSHHHNKKLTkDPFTSGTSIRNNWSTQIDQnpnntvNLSQYVPPSTYQFIQKQKPN- 240
Cdd:pfam05636 158 GIEYLKALKKLNSPIKPVTIKREGAGYHDEELS-GSIASATAIRKALKGGGDE------ELSRYVPESTLEILENEIKKg 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 241 -SNDLFLPYILFTLERINYEDLMRIHLMKEDFAHRLikyKQQMRHIESFDALCLLLKSKNYTYTFIQRMLIHIMLNI--- 316
Cdd:pfam05636 231 vFWEDFFPLLKYKLLTMSPEELAQIYDVSEGLENRI---KKAARKANSFEELIELIKTKRYTYTRIQRILLHILLGItke 307

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1143560112 317 --QTIDEIKG--LRVLGMNQKGRKYLKQL--NSDIEIITNVNKQNKH-----LIRQNIESTNMYNFITK-HKENDFNR 382
Cdd:pfam05636 308 dmKSLKSNGKpyIRVLGFNKKGRELLKEIkkKSSLPIITKVAKAKKLseareLLELDIRATDLYSLLYKnKSQRDGEQ 385
PRK13670 PRK13670
nucleotidyltransferase;
2-385 4.82e-115

nucleotidyltransferase;


Pssm-ID: 237464  Cd Length: 388  Bit Score: 340.64  E-value: 4.82e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112   2 MNALGIISEYNPFHNGHLYQIQCARQDHPDSVIIALMSGDFTQRGELACLSKFDRTRTVLPH-VDLVIELPHQFAIQSAQ 80
Cdd:PRK13670    1 MKVTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQRGEPAIVDKWTRAKMALENgVDLVVELPFLYSVQSAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112  81 YFAQGAIEALRHLNVSTLSFGSESGSIDQLTKIAKklhIINEEYKNDKHEVISYMRRGNTYAQSMNQLLDNQFN------ 154
Cdd:PRK13670   81 FFAEGAVSILDALGVDSLVFGSESGDIEDFQKIAK---ILNEEPEEFKKLLKELLKKGLSYPQARSEALEEFLGeinfdl 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 155 DTPNDILATQYIYHNMMLDQPMTLHTVQRKTSHHHNKKLtKDPFTSGTSIRNNwstqidQNPNNTVNLSQYVPPSTYQFI 234
Cdd:PRK13670  158 STPNNILGLEYAKAIAKLGSNIKLHTIKREGAGYHDEEL-DGEFASATAIRKA------LLEKDLDELKKFVPKATLELL 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 235 QK--QKPNSNDLFLPYILFTLERINYEDLMRIHLMKEDFAHRLikyKQQMRHIESFDALCLLLKSKNYTYTFIQRMLIHI 312
Cdd:PRK13670  231 KRyiGPFVSWEDYFPFLKYQLITLSHEDLRQIYQVSEGLENRI---KKAIKKASSFDEFVELVKTKRYTYTRIQRLLTYI 307

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 313 MLNI-----QTIDEIKGLRVLGMNQKGRKYLKQL--NSDIEIITNVNKqnKHLIRQNIESTNMYNFITKHK--ENDFNRP 383
Cdd:PRK13670  308 LLNAtkedvEKTSLPPYIRVLGFTEKGQQYLKKIkkKSSLPIITKISK--KPWLELDIKATNIYQLINPSQiqEQDFGRP 385


                  ..
gi 1143560112 384 VI 385
Cdd:PRK13670  386 PI 387
 
Name Accession Description Interval E-value
TmcAL COG1323
tRNA-Met C34-N4-acetylcytidine synthase TmcAL [Translation, ribosomal structure and biogenesis] ...
 2-385 1.05e-147

tRNA-Met C34-N4-acetylcytidine synthase TmcAL [Translation, ribosomal structure and biogenesis]; tRNA-Met C34-N4-acetylcytidine synthase TmcAL is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440934  Cd Length: 401  Bit Score: 424.21  E-value: 1.05e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112   2 MNALGIISEYNPFHNGHLYQIQCARQDHPDSVIIALMSGDFTQRGELACLSKFDRTRTVLPH-VDLVIELPHQFAIQSAQ 80
Cdd:COG1323     1 MKAVGIIAEYNPFHNGHLYHIEEAKKLTGADVVIAVMSGNFVQRGEPAILDKWARAKMALKNgVDLVIELPVVFAVQSAE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112  81 YFAQGAIEALRHLN-VSTLSFGSESGSIDQLTKIAKklhIINEEYKNDKHEVISYMRRGNTYAQSMNQLLDNQFND---- 155
Cdd:COG1323    81 YFAYGAVSLLDALGvVDHLCFGSESGDIELLKEIAK---ILIEEPEEFKELLKKYLKKGLSYPKARSLALEELLGDelae 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 156 ---TPNDILATQYIYHNMMLDQPMTLHTVQRKTSHHHNKKLTkDPFTSGTSIRNNWSTqidqnpNNTVNLSQYVPPSTYQ 232
Cdd:COG1323   158 dlsSPNNILGLEYLKALKKLNSPIKPLTIKRIGAGYHDEELT-GKIASATAIRKALLE------GDLEKLKNYVPPATYE 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 233 FIQKQK-----PNSNDLFLPYILFTLERINYEDLMRIHLMKEDFAHRLikyKQQMRHIESFDALCLLLKSKNYTYTFIQR 307
Cdd:COG1323   231 ILKEEIkegrgPVSWEDFFPLLLYKLLTSSPEELANIYDVSEGLENRI---KKAARKAGSFEELIELIKTKRYTWTRIQR 307

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 308 MLIHIMLNIQTID-------EIKGLRVLGMNQKGRKYLKQL--NSDIEIITNVNKQNKHLIRQNIESTNMYNFITKHKE- 377
Cdd:COG1323   308 ILLHILLGITKDDlesflkkGPPYIRVLGFNKKGRELLKEIkkKASLPIITKVSKYKKSLLELDIRATDLYSLLYPNPKp 387

                         410
                  ....*....|.
gi 1143560112 378 ---NDFNRPVI 385
Cdd:COG1323   388 rkgQDFTRPPI 398
HIGH_NTase1 pfam05636
HIGH Nucleotidyl Transferase; This family consists of HIGH Nucleotidyl Transferases
 10-382 1.72e-118

HIGH Nucleotidyl Transferase; This family consists of HIGH Nucleotidyl Transferases


Pssm-ID: 428556  Cd Length: 386  Bit Score: 349.15  E-value: 1.72e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112  10 EYNPFHNGHLYQIQCARQDHPDSVIIALMSGDFTQRGELACLSKFDRTRTVLPH-VDLVIELPHQFAIQSAQYFAQGAIE 88
Cdd:pfam05636   1 EYNPFHNGHLYHLEQAKELTGADVIIAVMSGNFVQRGEPAIIDKWTRAEMALENgADLVIELPVVYAVQSAEYFAKGAVS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112  89 ALRHLN-VSTLSFGSESGSIDQLTKIAKKLHIINEEYKNDKHEvisYMRRGNTYAQSMNQLLDNQFN------DTPNDIL 161
Cdd:pfam05636  81 LLNALGvVDSLSFGSESGDIELLQKIADILAEEPEEYKELLKE---YLKKGLSYPKAREKALASYLGlilellSSPNNIL 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 162 ATQYIYHNMMLDQPMTLHTVQRKTSHHHNKKLTkDPFTSGTSIRNNWSTQIDQnpnntvNLSQYVPPSTYQFIQKQKPN- 240
Cdd:pfam05636 158 GIEYLKALKKLNSPIKPVTIKREGAGYHDEELS-GSIASATAIRKALKGGGDE------ELSRYVPESTLEILENEIKKg 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 241 -SNDLFLPYILFTLERINYEDLMRIHLMKEDFAHRLikyKQQMRHIESFDALCLLLKSKNYTYTFIQRMLIHIMLNI--- 316
Cdd:pfam05636 231 vFWEDFFPLLKYKLLTMSPEELAQIYDVSEGLENRI---KKAARKANSFEELIELIKTKRYTYTRIQRILLHILLGItke 307

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1143560112 317 --QTIDEIKG--LRVLGMNQKGRKYLKQL--NSDIEIITNVNKQNKH-----LIRQNIESTNMYNFITK-HKENDFNR 382
Cdd:pfam05636 308 dmKSLKSNGKpyIRVLGFNKKGRELLKEIkkKSSLPIITKVAKAKKLseareLLELDIRATDLYSLLYKnKSQRDGEQ 385
PRK13670 PRK13670
nucleotidyltransferase;
2-385 4.82e-115

nucleotidyltransferase;


Pssm-ID: 237464  Cd Length: 388  Bit Score: 340.64  E-value: 4.82e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112   2 MNALGIISEYNPFHNGHLYQIQCARQDHPDSVIIALMSGDFTQRGELACLSKFDRTRTVLPH-VDLVIELPHQFAIQSAQ 80
Cdd:PRK13670    1 MKVTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQRGEPAIVDKWTRAKMALENgVDLVVELPFLYSVQSAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112  81 YFAQGAIEALRHLNVSTLSFGSESGSIDQLTKIAKklhIINEEYKNDKHEVISYMRRGNTYAQSMNQLLDNQFN------ 154
Cdd:PRK13670   81 FFAEGAVSILDALGVDSLVFGSESGDIEDFQKIAK---ILNEEPEEFKKLLKELLKKGLSYPQARSEALEEFLGeinfdl 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 155 DTPNDILATQYIYHNMMLDQPMTLHTVQRKTSHHHNKKLtKDPFTSGTSIRNNwstqidQNPNNTVNLSQYVPPSTYQFI 234
Cdd:PRK13670  158 STPNNILGLEYAKAIAKLGSNIKLHTIKREGAGYHDEEL-DGEFASATAIRKA------LLEKDLDELKKFVPKATLELL 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 235 QK--QKPNSNDLFLPYILFTLERINYEDLMRIHLMKEDFAHRLikyKQQMRHIESFDALCLLLKSKNYTYTFIQRMLIHI 312
Cdd:PRK13670  231 KRyiGPFVSWEDYFPFLKYQLITLSHEDLRQIYQVSEGLENRI---KKAIKKASSFDEFVELVKTKRYTYTRIQRLLTYI 307

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 313 MLNI-----QTIDEIKGLRVLGMNQKGRKYLKQL--NSDIEIITNVNKqnKHLIRQNIESTNMYNFITKHK--ENDFNRP 383
Cdd:PRK13670  308 LLNAtkedvEKTSLPPYIRVLGFTEKGQQYLKKIkkKSSLPIITKISK--KPWLELDIKATNIYQLINPSQiqEQDFGRP 385


                  ..
gi 1143560112 384 VI 385
Cdd:PRK13670  386 PI 387
PRK13671 PRK13671
nucleotidyltransferase;
4-317 2.17e-46

nucleotidyltransferase;


Pssm-ID: 184228  Cd Length: 298  Bit Score: 160.63  E-value: 2.17e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112   4 ALGIISEYNPFHNGHLYQIQCARQDHPDSVIIALMSGDFTQRGELACLSKFDRTRTVLPH-VDLVIELPHQFAIQSAQYF 82
Cdd:PRK13671    2 AIGIIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKYTQRGEIAVASFEKRKKIALKYgVDKVIKLPFEYATQAAHIF 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112  83 AQGAIEALRHLNVSTLSFGSESGSIDQLTKIAKKLHIINEEYKNDkheVISYMRRGNTYAQSMN---QLLDNQFNDTPND 159
Cdd:PRK13671   82 AKGAIKKLNKEKIDKLIFGSESNDIELMYKIANTIKENEEEYNQL---LKKNLKQGYSFPKASSlalKELTGSEIVMPND 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 160 ILATQYIYHNMMLDQPMTLHTVQRKTSHHhnKKLTKDPFTSGTSIRnnwstqidQNPNNTVNLSQYVpPSTYQFIQKQKP 239
Cdd:PRK13671  159 ILGFEYIKQIVNNNYPIQPYCIKRTVGFH--SENPEDNYASATYLR--------KMIFENKDISKYS-PMKFKKPPKSIE 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143560112 240 NSNDLFLPYILFTleriNYEDLMRIHLMKEDFAHRLIKykqqmrHIE--SFDALCLLLKSKNYTYTFIQRMLIHIMLNIQ 317
Cdd:PRK13671  228 NLYKEFQKIVRNT----SKEKLAKIWLVSEGIENLFKK------NINapNYDSFVNKCNSKRYTSSRIKRIMLYVLLKIK 297
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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