|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
1-425 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 658.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 1 MFENLQDRLGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDKVREKAVGAAVLKSIKPGQMVVKIVHD 80
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 81 ELVEMLGTEGVSIDLHAAAPVVIMMVGLQGSGKTTTTGKIAKRLTdRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTL 160
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLK-KKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 161 PIIAGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERV 240
Cdd:COG0541 160 PEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 241 GITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILGMGDIVSLVEKAAENIDAEKARAMA 320
Cdd:COG0541 240 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 321 EKMAKGKFDLNDLADQLAQmkkmggmggimglmpgmagMK------------------DKMASAGMNDKMFDRQIAIISS 382
Cdd:COG0541 320 KKLKKGKFDLEDFLEQLQQ-------------------MKkmgplkkllgmlpgmgklKQLKDLDIDEKELKRIEAIINS 380
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1150792926 383 MTKAERANPDILKHSRKKRIAAGSGTDAAEINKLLKMHRGMAD 425
Cdd:COG0541 381 MTPEERRNPDIINGSRKRRIAKGSGTTVQDVNRLLKQFEQMKK 423
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
2-423 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 599.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 2 FENLQDRLGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDKVREKAVGAAVLKSIKPGQMVVKIVHDE 81
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 82 LVEMLGTEGVSIDLHAAAPVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLP 161
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 162 IIAGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVG 241
Cdd:TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 242 ITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILGMGDIVSLVEKAAENIDAEKARAMAE 321
Cdd:TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 322 KMAKGKFDLNDLADQLAQMKKMGGMGGIMGLMPGMAGMKDKMASAGMNDKMFDRQIAIISSMTKAERANPDILKHSRKKR 401
Cdd:TIGR00959 321 KMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDADLDEKQFKRIEAIISSMTPEERRNPKILNPSRRKR 400
|
410 420
....*....|....*....|..
gi 1150792926 402 IAAGSGTDAAEINKLLKMHRGM 423
Cdd:TIGR00959 401 IAAGSGTTVQDVNKLIKRFEQM 422
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
5-423 |
1.16e-129 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 384.56 E-value: 1.16e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 5 LQDRLGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDKVREKAVGAAVLKSIKPGQMVVKIVHDELVE 84
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 85 MLGtEGVSIDLHAAAPVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASlDTRRPAAQEQLRQLGVQTGVDTLPIIA 164
Cdd:PRK00771 81 LLG-EETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA-DTYRPAAYDQLKQLAEKIGVPFYGDPD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 165 GQSPTDIAARAVQAAKlgGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVGITG 244
Cdd:PRK00771 159 NKDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 245 LVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILGMGDIVSLVEKAAENIDAEKARAMAEKMA 324
Cdd:PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMM 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 325 KGKFDLNDLADQLAQMKKMGGMGGIMGLMPGMAGMKDKMASAGMNDKMfDRQIAIISSMTKAERANPDILKHSRKKRIAA 404
Cdd:PRK00771 317 KGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGKLPDEALEVTEEKL-KKYKAIMDSMTEEELENPEIINASRIRRIAR 395
|
410
....*....|....*....
gi 1150792926 405 GSGTDAAEINKLLKMHRGM 423
Cdd:PRK00771 396 GSGTTVEDVRELLKYYKMM 414
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
102-294 |
3.63e-99 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 297.20 E-value: 3.63e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 102 VIMMVGLQGSGKTTTTGKIAKRLtDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAAKL 181
Cdd:cd18539 2 VILLVGLQGSGKTTTAAKLALYL-KKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 182 GGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALS 261
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 1150792926 262 MRAVTGKPIKLIGIGERMNELDEFHPRRIADRI 294
Cdd:cd18539 161 IRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
100-296 |
1.11e-96 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 291.24 E-value: 1.11e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 100 PVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAA 179
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 180 KLGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAA 259
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 1150792926 260 LSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILG 296
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
6.07e-83 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 255.54 E-value: 6.07e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 102 VIMMVGLQGSGKTTTTGKIAKRLTdRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAAKL 181
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLK-KKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 182 GGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 1150792926 262 MRAVTGKPIKLIGIGERMNELDEFHPRRIADRI 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
1-425 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 658.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 1 MFENLQDRLGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDKVREKAVGAAVLKSIKPGQMVVKIVHD 80
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 81 ELVEMLGTEGVSIDLHAAAPVVIMMVGLQGSGKTTTTGKIAKRLTdRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTL 160
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLK-KKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 161 PIIAGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERV 240
Cdd:COG0541 160 PEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 241 GITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILGMGDIVSLVEKAAENIDAEKARAMA 320
Cdd:COG0541 240 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 321 EKMAKGKFDLNDLADQLAQmkkmggmggimglmpgmagMK------------------DKMASAGMNDKMFDRQIAIISS 382
Cdd:COG0541 320 KKLKKGKFDLEDFLEQLQQ-------------------MKkmgplkkllgmlpgmgklKQLKDLDIDEKELKRIEAIINS 380
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1150792926 383 MTKAERANPDILKHSRKKRIAAGSGTDAAEINKLLKMHRGMAD 425
Cdd:COG0541 381 MTPEERRNPDIINGSRKRRIAKGSGTTVQDVNRLLKQFEQMKK 423
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
2-423 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 599.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 2 FENLQDRLGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDKVREKAVGAAVLKSIKPGQMVVKIVHDE 81
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 82 LVEMLGTEGVSIDLHAAAPVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLP 161
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 162 IIAGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVG 241
Cdd:TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 242 ITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILGMGDIVSLVEKAAENIDAEKARAMAE 321
Cdd:TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 322 KMAKGKFDLNDLADQLAQMKKMGGMGGIMGLMPGMAGMKDKMASAGMNDKMFDRQIAIISSMTKAERANPDILKHSRKKR 401
Cdd:TIGR00959 321 KMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDADLDEKQFKRIEAIISSMTPEERRNPKILNPSRRKR 400
|
410 420
....*....|....*....|..
gi 1150792926 402 IAAGSGTDAAEINKLLKMHRGM 423
Cdd:TIGR00959 401 IAAGSGTTVQDVNKLIKRFEQM 422
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
5-423 |
1.16e-129 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 384.56 E-value: 1.16e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 5 LQDRLGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDKVREKAVGAAVLKSIKPGQMVVKIVHDELVE 84
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 85 MLGtEGVSIDLHAAAPVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASlDTRRPAAQEQLRQLGVQTGVDTLPIIA 164
Cdd:PRK00771 81 LLG-EETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA-DTYRPAAYDQLKQLAEKIGVPFYGDPD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 165 GQSPTDIAARAVQAAKlgGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVGITG 244
Cdd:PRK00771 159 NKDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 245 LVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILGMGDIVSLVEKAAENIDAEKARAMAEKMA 324
Cdd:PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMM 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 325 KGKFDLNDLADQLAQMKKMGGMGGIMGLMPGMAGMKDKMASAGMNDKMfDRQIAIISSMTKAERANPDILKHSRKKRIAA 404
Cdd:PRK00771 317 KGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGKLPDEALEVTEEKL-KKYKAIMDSMTEEELENPEIINASRIRRIAR 395
|
410
....*....|....*....
gi 1150792926 405 GSGTDAAEINKLLKMHRGM 423
Cdd:PRK00771 396 GSGTTVEDVRELLKYYKMM 414
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
102-294 |
3.63e-99 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 297.20 E-value: 3.63e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 102 VIMMVGLQGSGKTTTTGKIAKRLtDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAAKL 181
Cdd:cd18539 2 VILLVGLQGSGKTTTAAKLALYL-KKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 182 GGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALS 261
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 1150792926 262 MRAVTGKPIKLIGIGERMNELDEFHPRRIADRI 294
Cdd:cd18539 161 IRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
100-296 |
1.11e-96 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 291.24 E-value: 1.11e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 100 PVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAA 179
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 180 KLGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAA 259
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 1150792926 260 LSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILG 296
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
6.07e-83 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 255.54 E-value: 6.07e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 102 VIMMVGLQGSGKTTTTGKIAKRLTdRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAAKL 181
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLK-KKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 182 GGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 1150792926 262 MRAVTGKPIKLIGIGERMNELDEFHPRRIADRI 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
1-296 |
1.93e-79 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 250.71 E-value: 1.93e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 1 MFENLQDRL--------GSILNGLTGRGALTEADvaaaLREVRRALLEADVALEVVRSFTDKVREKAVGaavlKSIKPGQ 72
Cdd:COG0552 1 FFERLKEGLsktrsglgEKLKSLFSGKKKIDEDL----LEELEELLIEADVGVETTEEIIEELRERVKR----KKLKDPE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 73 MVVKIVHDELVEMLGTEGVSIDLHAAAPVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKkVLMASLDTRRPAAQEQLRQLG 152
Cdd:COG0552 73 ELKEALKEELLEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKS-VLLAAGDTFRAAAIEQLEVWG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 153 VQTGVdtlPIIAGQSPTDIAA---RAVQAAKLGGHDVVILDTAGRTHIDEPLMLEMADIK---KK---SNPHEILLVADS 223
Cdd:COG0552 152 ERVGV---PVIAQKEGADPAAvafDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKrviKKldpDAPHEVLLVLDA 228
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1150792926 224 LTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILG 296
Cdd:COG0552 229 TTGQNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
102-294 |
6.84e-69 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 219.55 E-value: 6.84e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 102 VIMMVGLQGSGKTTTTGKIAKRLTDRdKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAAKL 181
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLARYYQEK-GKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 182 GGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALS 261
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 1150792926 262 MRAVTGKPIKLIGIGERMNELDEFHPRRIADRI 294
Cdd:cd03115 161 IVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
21-296 |
1.37e-68 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 223.70 E-value: 1.37e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 21 ALTEADVAAALREVRRALLEADVALEVVRSFTDKVREKAVGAAVLKSIKPGQMVVKIVHDELVEMLGTEGVSIDLHAAA- 99
Cdd:PRK14974 57 EIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDLFDLIEEIKs 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 100 ---PVVIMMVGLQGSGKTTTTGKIAKRLTDRdKKKVLMASLDTRRPAAQEQLRQLGVQTGVdtlPIIAGQ---SPTDIAA 173
Cdd:PRK14974 137 kgkPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GFSVVIAAGDTFRAGAIEQLEEHAERLGV---KVIKHKygaDPAAVAY 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 174 RAVQAAKLGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGD 253
Cdd:PRK14974 213 DAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDAD 292
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1150792926 254 GRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILG 296
Cdd:PRK14974 293 AKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
6-296 |
4.42e-67 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 219.20 E-value: 4.42e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 6 QDRLGSILNGLTGRGALTEAdvaaALREVRRALLEADVALEVVRSFTDKVREKAVGaavlKSIKPGQMVVKIVHDELVEM 85
Cdd:PRK10416 28 RENFGEGINGLFAKKKIDED----LLEELEELLIEADVGVETTEEIIEELRERVKR----KNLKDPEELKELLKEELAEI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 86 LGTEGVSIDLHAAAPVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKkVLMASLDTRRPAAQEQLRQLGVQTGVdtlPIIAG 165
Cdd:PRK10416 100 LEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKK-VLLAAGDTFRAAAIEQLQVWGERVGV---PVIAQ 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 166 QSPTDIAA---RAVQAAKLGGHDVVILDTAGRTHIDEPLMLEMADIKK------KSNPHEILLVADSLTGQDAVNLARNF 236
Cdd:PRK10416 176 KEGADPASvafDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRvikkadPDAPHEVLLVLDATTGQNALSQAKAF 255
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 237 DERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILG 296
Cdd:PRK10416 256 HEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
4-424 |
8.31e-61 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 206.22 E-value: 8.31e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 4 NLQDRLGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDKVREKAVGAAVLKSIKPGQMVVKIVHDELV 83
Cdd:TIGR01425 4 QLGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEELC 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 84 EMLGTEGVSIDLHAAAPVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASlDTRRPAAQEQLRQLGVQTGVDTLPII 163
Cdd:TIGR01425 84 NLVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCA-DTFRAGAFDQLKQNATKAGIPFYGSY 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 164 AGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVGIT 243
Cdd:TIGR01425 163 EESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVEVG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 244 GLVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILGMGDIVSLVEKAAENIDAEKARAMAEKM 323
Cdd:TIGR01425 243 SVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEKTLIEHL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 324 AKGKFDLNDLADQLAQmkkMGGMGGIMGLMPGMAGMKDKMASAGMNDKM---FDRQIAIISSMTKAERANPD---ILKHS 397
Cdd:TIGR01425 323 KEGTFTLRDWYEQFQN---LLKMGPLGNIMSMIPGLSHPMMSKGNEEETsakIKVFMTIMDSMTDRELDSTAktmLKDPS 399
|
410 420
....*....|....*....|....*..
gi 1150792926 398 RKKRIAAGSGTDAAEINKLLKMHRGMA 424
Cdd:TIGR01425 400 RIRRVARGSGRDIREVNELLEQYKLFA 426
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
101-294 |
1.33e-59 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 195.48 E-value: 1.33e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 101 VVIMMVGLQGSGKTTTTGKIAKRLTDRdKKKVLMASLDTRRPAAQEQLRQLGVQTGVdtlPIIAGQSPTDIAA---RAVQ 177
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQ-GKKVVLAAGDTFRAAAVEQLEEWAERLGV---PVISQNEGADPAAvafDAIQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 178 AAKLGGHDVVILDTAGRTHIDEPLMLEMADIKK------KSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMD 251
Cdd:cd17874 77 AAKARGIDVVLIDTAGRLHTKKNLMEELKKIKRvikkkdPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLD 156
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1150792926 252 GDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRI 294
Cdd:cd17874 157 GTAKGGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-294 |
6.12e-52 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 175.07 E-value: 6.12e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 102 VIMMVGLQGSGKTTTTGKIAKRLTDRDKKkVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAAKL 181
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQKKGYK-VGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 182 GGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALS 261
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 1150792926 262 MRAVTGKPIKLIGIGERMNELDEFHPRRIADRI 294
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
102-292 |
1.40e-33 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 126.19 E-value: 1.40e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 102 VIMMVGLQGSGKTTTTGKIAKRLTDrDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAAKL 181
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLS-NGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 182 GGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERV----------GITGLVLTRMD 251
Cdd:cd17876 81 QGFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGIVLTKFD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1150792926 252 G-DGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIAD 292
Cdd:cd17876 161 TiDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVN 202
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
9-296 |
2.74e-33 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 129.99 E-value: 2.74e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 9 LGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDKVREKAVGAAVLKSIKpgqmvvkivhDELVEMLGT 88
Cdd:COG1419 86 LKELLEEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDLSAEEAWRALL----------EALARRLPV 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 89 EGVSIDLHAAapvVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASLDTRRPAAQEQLRQ----LGVqtgvdtlPIIA 164
Cdd:COG1419 156 AEDPLLDEGG---VIALVGPTGVGKTTTIAKLAARFVLRGKKKVALITTDTYRIGAVEQLKTyariLGV-------PVEV 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 165 GQSPTDIAAravQAAKLGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVAdSLT--GQDAVNLARNFdERVGI 242
Cdd:COG1419 226 AYDPEELKE---ALERLRDKDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVL-SATtkYEDLKEIVEAF-SSLGL 300
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1150792926 243 TGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNE-LDEFHPRRIADRILG 296
Cdd:COG1419 301 DGLILTKLDETASLGSILNLLIRTGLPLSYITNGQRVPEdIEVADPERLARLLLG 355
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
102-294 |
2.88e-23 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 97.23 E-value: 2.88e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 102 VIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVdtlPIIAGQSPTDIAAravQAAKL 181
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKKGKKVALITTDTYRIGAVEQLKTYAEIMGI---PVEVAEDPEDLAD---ALERL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 182 GGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLV-ADSLTGQDAVNLARNFdERVGITGLVLTRMDGDGRGGAAL 260
Cdd:cd17873 76 SDRDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVlSATTKAKDLKEIIERF-SPLGYRGLILTKLDETTSLGSVL 154
|
170 180 190
....*....|....*....|....*....|....*
gi 1150792926 261 SMRAVTGKPIKLIGIGERM-NELDEFHPRRIADRI 294
Cdd:cd17873 155 SVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
327-424 |
3.99e-23 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 93.62 E-value: 3.99e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 327 KFDLNDLADQLAQmkkmggmggimglmpgmagMK---------------DKMASAGMNDKMFDRQIAIISSMTKAERANP 391
Cdd:pfam02978 1 KFTLRDFLEQLQQ-------------------IKkmgplskilsmipgmGKKDDDIDSEKKLKRIEAIIDSMTPKERDNP 61
|
90 100 110
....*....|....*....|....*....|...
gi 1150792926 392 DILKHSRKKRIAAGSGTDAAEINKLLKMHRGMA 424
Cdd:pfam02978 62 DIINASRKRRIARGSGTSVQEVNRLLKQFKQMK 94
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
5-82 |
1.96e-21 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 87.91 E-value: 1.96e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1150792926 5 LQDRLGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDKVREKAVGaavLKSIKPGQMVVKIVHDEL 82
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVG---EKKLKPPQEVKKILKEEL 75
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
9-86 |
1.32e-19 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 82.98 E-value: 1.32e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1150792926 9 LGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDKVREKAVGaAVLKSIKPGQMVVKIVHDELVEML 86
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKG-EVLKGLTPKQEVKKILKEELVKIL 77
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
33-296 |
1.14e-18 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 88.41 E-value: 1.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 33 EVRRALLEADVALEVVRSFTDKVREKAVGAavlksikpGQMVVKIVHDELVEMLGTEGVSIDLHAAapvVIMMVGLQGSG 112
Cdd:PRK05703 165 ELYKRLKRSGLSPEIAEKLLKLLLEHMPPR--------ERTAWRYLLELLANMIPVRVEDILKQGG---VVALVGPTGVG 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 113 KTTTTGKIAKRLTDRD-KKKVLMASLDTRRPAAQEQLRQLGVQTGVdtlPIIAGQSPTDiAARAVQaaKLGGHDVVILDT 191
Cdd:PRK05703 234 KTTTLAKLAARYALLYgKKKVALITLDTYRIGAVEQLKTYAKIMGI---PVEVVYDPKE-LAKALE--QLRDCDVILIDT 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 192 AGRTHIDEPLMLEMAD-IKKKSNPHEILLVAdSLTGQ--DAVNLARNFDeRVGITGLVLTRMDGDGRGGAALSMRAVTGK 268
Cdd:PRK05703 308 AGRSQRDKRLIEELKAlIEFSGEPIDVYLVL-SATTKyeDLKDIYKHFS-RLPLDGLIFTKLDETSSLGSILSLLIESGL 385
|
250 260
....*....|....*....|....*....
gi 1150792926 269 PIKLIGIGERMNE-LDEFHPRRIADRILG 296
Cdd:PRK05703 386 PISYLTNGQRVPDdIKVANPEELVRLLLG 414
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
31-193 |
2.36e-14 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 73.52 E-value: 2.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 31 LREVRRALLEADVALEVVRSFTDKVREKAvgaavlksikPGQMVVKIVHDELVEMLGTEGVSIDLHAAaPVVIMMVGLQG 110
Cdd:TIGR03499 136 RAKLYERLLEAGVSEELARELLEKLPEDA----------DAEDAWRWLREALEGMLPVKPEEDPILEQ-GGVIALVGPTG 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 111 SGKTTTTGKIAKRLTDRD-KKKVLMASLDTRRPAAQEQLRQLGVQTGVdtlPIIAGQSPTDIaARAVQaaKLGGHDVVIL 189
Cdd:TIGR03499 205 VGKTTTLAKLAARFALEHgKKKVALITTDTYRIGAVEQLKTYAEILGI---PVKVARDPKEL-REALD--RLRDKDLILI 278
|
....
gi 1150792926 190 DTAG 193
Cdd:TIGR03499 279 DTAG 282
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
23-277 |
1.11e-12 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 70.10 E-value: 1.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 23 TEADVAAALREVRRALLEADVALEVVRSFTDKVREKAVGAAVLKSikpgQMVVKIVHDELVEMLGTEGVsidlHAAAPVV 102
Cdd:PRK11889 172 KQESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITE----EEVIEYILEDMRSHFNTENV----FEKEVQT 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 103 IMMVGLQGSGKTTTTGKIAKRLTDRdKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAAKLg 182
Cdd:PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV- 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 183 ghDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEI-LLVADSLTGQDAVNLARNFDErVGITGLVLTRMDGDGRGGAALS 261
Cdd:PRK11889 322 --DYILIDTAGKNYRASETVEEMIETMGQVEPDYIcLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLK 398
|
250
....*....|....*.
gi 1150792926 262 MRAVTGKPIKLIGIGE 277
Cdd:PRK11889 399 IPAVSSAPIVLMTDGQ 414
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
102-300 |
6.20e-12 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 68.09 E-value: 6.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 102 VIMMVGLQGSGKTTTTGKIAKRLTDRDK-KKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARavqaak 180
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQHApRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER------ 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 181 LGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFdERVGITGLVLTRMDGDGRGGAAL 260
Cdd:PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRF-AHAKPQGVVLTKLDETGRFGSAL 504
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1150792926 261 SMRAVTGKPIKLIGIGERMNelDEFHPRRIADRILGMGDI 300
Cdd:PRK12727 505 SVVVDHQMPITWVTDGQRVP--DDLHRANAASLVLRLEDL 542
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
24-277 |
4.09e-11 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 63.61 E-value: 4.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 24 EADVAAALREVRRALLEADVALEVVRSFTDKVREKAVGAAVLKsikpgQMVVKIVHDELVEMLGTEGVsidlHAAAPVVI 103
Cdd:PRK06731 8 QESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMIT-----EEVIEYILEDMSSHFNTENV----FEKEVQTI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 104 MMVGLQGSGKTTTTGKIAKRLTDRdKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAAKLgg 183
Cdd:PRK06731 79 ALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV-- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 184 hDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEI-LLVADSLTGQDAVNLARNFDErVGITGLVLTRMDGDGRGGAALSM 262
Cdd:PRK06731 156 -DYILIDTAGKNYRASETVEEMIETMGQVEPDYIcLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKI 233
|
250
....*....|....*
gi 1150792926 263 RAVTGKPIKLIGIGE 277
Cdd:PRK06731 234 PAVSSAPIVLMTDGQ 248
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
102-281 |
7.34e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 57.81 E-value: 7.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 102 VIMMVGLQGSGKTTTTGKIAKRLTDR-DKKKVLMASLDTRRPAAQEQLRQLGVQTGVdtlPIIAGQSPTDIaarAVQAAK 180
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRfGASKVALLTTDSYRIGGHEQLRIFGKILGV---PVHAVKDGGDL---QLALAE 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 181 LGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVN-LARNFDERVG--------ITGLVLTRMD 251
Cdd:PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNeVVQAYRSAAGqpkaalpdLAGCILTKLD 292
|
170 180 190
....*....|....*....|....*....|
gi 1150792926 252 GDGRGGAALSMRAVTGKPIKLIGIGERMNE 281
Cdd:PRK14722 293 EASNLGGVLDTVIRYKLPVHYVSTGQKVPE 322
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
102-242 |
3.84e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 52.38 E-value: 3.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 102 VIMMVGLQGSGKTTTTGKIAKRLtDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLpiiagqSPTDIAARAVQAAKL 181
Cdd:smart00382 4 VILIVGPPGSGKTTLARALAREL-GPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASG------SGELRLRLALALARK 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1150792926 182 GGHDVVILDTAGRTHIDEPLMLEMA-------DIKKKSNPHEILLVADSLTGQDAVNLARNFDERVGI 242
Cdd:smart00382 77 LKPDVLILDEITSLLDAEQEALLLLleelrllLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVL 144
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
78-251 |
7.06e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 54.97 E-value: 7.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 78 VHDELVEMLgTEGVSID--LHAAAP----VVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASLDTRRPAAQEQLRQL 151
Cdd:PRK12724 196 VTERAVTYL-EERVSVDsdLFSGTGknqrKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRY 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 152 GVQTGVDTLPIIAGQSPTDIAARavqaaklGGHDVVILDTAGRTHID-EPL--MLEMADIKKKSNPHEILLVADSLTGQD 228
Cdd:PRK12724 275 ADTMGMPFYPVKDIKKFKETLAR-------DGSELILIDTAGYSHRNlEQLerMQSFYSCFGEKDSVENLLVLSSTSSYH 347
|
170 180
....*....|....*....|...
gi 1150792926 229 AVNLARNFDERVGITGLVLTRMD 251
Cdd:PRK12724 348 HTLTVLKAYESLNYRRILLTKLD 370
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
102-295 |
3.14e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 52.64 E-value: 3.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 102 VIMMVGLQGSGKTTTTGKIAKRLTDRD-KKKVLMASLDTRRPAAQEQLRQLGVQTGVDTlpiiagQSPTDIAARAVQAAK 180
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLAARAVIRHgADKVALLTTDSYRIGGHEQLRIYGKLLGVSV------RSIKDIADLQLMLHE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 181 LGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAAL 260
Cdd:PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIAL 346
|
170 180 190
....*....|....*....|....*....|....*...
gi 1150792926 261 SmrAVTGKPIKL--IGIGERMNE-LDEFHPRRIADRIL 295
Cdd:PRK14721 347 D--AVIRRKLVLhyVTNGQKVPEdLHEANSRYLLHRIF 382
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
102-281 |
2.65e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 50.18 E-value: 2.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 102 VIMMVGLQGSGKTTTTGKIAKRLTDRD-KKKVLMASLDTRRPAAQEQLRQLGVQTGVdtlPIIAGQSPTDIaaRAVQAAk 180
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREgADQLALLTTDSFRIGALEQLRIYGRILGV---PVHAVKDAADL--RFALAA- 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 181 LGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVN-LARNFDERVG--ITGLVLTRMDGDGRGG 257
Cdd:PRK14723 261 LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNeVVHAYRHGAGedVDGCIITKLDEATHLG 340
|
170 180
....*....|....*....|....
gi 1150792926 258 AALSMRAVTGKPIKLIGIGERMNE 281
Cdd:PRK14723 341 PALDTVIRHRLPVHYVSTGQKVPE 364
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
100-262 |
2.49e-03 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 40.27 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 100 PVVIMMVGLQGSGKTTTTGKIAKRL---TDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVdtlPIIAGQSPTDIAARAV 176
Cdd:PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYginSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGI---PVKAIESFKDLKEEIT 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 177 QAAKLgghDVVILDTAGRTHIDEPLMLEMADI----KKKSNPHeiLLVADSLTGQDAVNLARNFdERVGITGLVLTRMDG 252
Cdd:PRK12723 251 QSKDF---DLVLVDTIGKSPKDFMKLAEMKELlnacGRDAEFH--LAVSSTTKTSDVKEIFHQF-SPFSYKTVIFTKLDE 324
|
170
....*....|
gi 1150792926 253 DGRGGAALSM 262
Cdd:PRK12723 325 TTCVGNLISL 334
|
|
| Mrp |
COG0489 |
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ... |
19-256 |
3.32e-03 |
|
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440255 [Multi-domain] Cd Length: 289 Bit Score: 39.40 E-value: 3.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 19 RGALTEADVAAALREVRRALLEADVALEVVRSFTDKVREKAVGAAVLKSIKPGQMVVKIVHDELVEMLGTEGVSIDLHAA 98
Cdd:COG0489 10 LLREEAQALLLLLLLLLLLLRLEEAAAAAALAAAAPAAAAPAPLPPAPALLLLLLLLLGLLLLLLLALALLLLLLLLLLR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 99 APVVIMMV--GLQGSGKTTTTGKIAKRLTDRDkKKVLMASLDTRRPAaqeQLRQLGVQTGVDTLPIIAGQSPTDIAARAV 176
Cdd:COG0489 90 LLLEVIAVtsGKGGEGKSTVAANLALALAQSG-KRVLLIDADLRGPS---LHRMLGLENRPGLSDVLAGEASLEDVIQPT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150792926 177 QAAKL-----------------------------GGHDVVILDTA-GRTHIDEPLMLEMADikkksnphEILLVADS-LT 225
Cdd:COG0489 166 EVEGLdvlpagplppnpsellaskrlkqlleelrGRYDYVIIDTPpGLGVADATLLASLVD--------GVLLVVRPgKT 237
|
250 260 270
....*....|....*....|....*....|...
gi 1150792926 226 GQDAVNLARNFDERVG--ITGLVLTRMDGDGRG 256
Cdd:COG0489 238 ALDDVRKALEMLEKAGvpVLGVVLNMVCPKGER 270
|
|
| Kti12 |
COG4088 |
tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) ... |
98-141 |
5.30e-03 |
|
tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) [Translation, ribosomal structure and biogenesis, Defense mechanisms];
Pssm-ID: 443264 [Multi-domain] Cd Length: 179 Bit Score: 38.17 E-value: 5.30e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 1150792926 98 AAPVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASLDTRR 141
Cdd:COG4088 2 DSPMLLILTGPPGSGKTTFAKALAQRLYAEGIAVALLHSDDFRR 45
|
|
| |
