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Conserved domains on  [gi|1150797581|ref|WP_077991422|]
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hypothetical protein [Rhizobium leguminosarum]

Protein Classification

lysozyme family protein( domain architecture ID 63)

lysozyme family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Lyz-like super family cl00222
lysozyme-like domains; This family contains several members, including soluble lytic ...
 1-77 3.68e-37

lysozyme-like domains; This family contains several members, including soluble lytic transglycosylases (SLT), goose egg-white lysozymes (GEWL), hen egg-white lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, chitosanases, and pesticin. Typical members are involved in the hydrolysis of beta-1,4- linked polysaccharides.


The actual alignment was detected with superfamily member PRK13843:

Pssm-ID: 469668  Cd Length: 207  Bit Score: 123.21  E-value: 3.68e-37
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1150797581   1 MFDAHSNLRMSTALVAKVARIVTKWYGRWTNQEVLPQMIDDTTYAWRTGVFEATRVFHAEDPGGPTFIGGNLRKPDS 77
Cdd:PRK13843   91 LVDACENLRMGTALFAKVYRIVTKWYGNPTSKDVLPQVFDDAIYAWKTGYFEGVAVFRAEDPGDVKLAEPEPGDSDE 167
 
Name Accession Description Interval E-value
PRK13843 PRK13843
conjugal transfer protein TraH; Provisional
 1-77 3.68e-37

conjugal transfer protein TraH; Provisional


Pssm-ID: 237530  Cd Length: 207  Bit Score: 123.21  E-value: 3.68e-37
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1150797581   1 MFDAHSNLRMSTALVAKVARIVTKWYGRWTNQEVLPQMIDDTTYAWRTGVFEATRVFHAEDPGGPTFIGGNLRKPDS 77
Cdd:PRK13843   91 LVDACENLRMGTALFAKVYRIVTKWYGNPTSKDVLPQVFDDAIYAWKTGYFEGVAVFRAEDPGDVKLAEPEPGDSDE 167
TraH-like cd16895
conjugal transfer protein H and similar proteins; This subfamily consists of several TraH ...
 1-73 3.73e-26

conjugal transfer protein H and similar proteins; This subfamily consists of several TraH proteins, putative conjugal transfer proteins of uncharacterized function, apparently found only in alphaproteobacteria. They have similarity to lysozyme and preserve the critical glutamate residue which has catalytic activity in lysozyme-like proteins.


Pssm-ID: 381616  Cd Length: 198  Bit Score: 94.71  E-value: 3.73e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1150797581   1 MFDAHSNLRMSTALVAKVARIVTKWYGrwTNQevlPQMIDDTTYAWRTGVFEATRVFHAEDPGGPTFIGGNLR 73
Cdd:cd16895    90 LFDPCENLRMGTALFAKVYRIVTKWYG--NPA---PQAFDDAIYAWKTGYFEGESVFQAQDPGGVIVAPPNVG 157
TraH_2 pfam06871
TraH_2; This family consists of several TraH proteins which seem to be specific to ...
 1-76 3.65e-22

TraH_2; This family consists of several TraH proteins which seem to be specific to Agrobacterium and Rhizobium species. This protein is thought to be involved in conjugal transfer but its function is unknown. This family does not appear to be related to pfam06122.


Pssm-ID: 429166  Cd Length: 208  Bit Score: 84.64  E-value: 3.65e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1150797581   1 MFDAHSNLRMSTALVAKVARIVTKWYGRWTNQEVLPQMIDDTTYAWRTGVFEATRVFHAEDPGGPTfiggnLRKPD 76
Cdd:pfam06871  91 LIDACANIKMGTALFAKVYRIVTKWYGNPADSEVLPQAFEDAIEAWKTGYFDGKAVFDAADPGDLK-----LPEGA 161
 
Name Accession Description Interval E-value
PRK13843 PRK13843
conjugal transfer protein TraH; Provisional
 1-77 3.68e-37

conjugal transfer protein TraH; Provisional


Pssm-ID: 237530  Cd Length: 207  Bit Score: 123.21  E-value: 3.68e-37
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1150797581   1 MFDAHSNLRMSTALVAKVARIVTKWYGRWTNQEVLPQMIDDTTYAWRTGVFEATRVFHAEDPGGPTFIGGNLRKPDS 77
Cdd:PRK13843   91 LVDACENLRMGTALFAKVYRIVTKWYGNPTSKDVLPQVFDDAIYAWKTGYFEGVAVFRAEDPGDVKLAEPEPGDSDE 167
TraH-like cd16895
conjugal transfer protein H and similar proteins; This subfamily consists of several TraH ...
 1-73 3.73e-26

conjugal transfer protein H and similar proteins; This subfamily consists of several TraH proteins, putative conjugal transfer proteins of uncharacterized function, apparently found only in alphaproteobacteria. They have similarity to lysozyme and preserve the critical glutamate residue which has catalytic activity in lysozyme-like proteins.


Pssm-ID: 381616  Cd Length: 198  Bit Score: 94.71  E-value: 3.73e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1150797581   1 MFDAHSNLRMSTALVAKVARIVTKWYGrwTNQevlPQMIDDTTYAWRTGVFEATRVFHAEDPGGPTFIGGNLR 73
Cdd:cd16895    90 LFDPCENLRMGTALFAKVYRIVTKWYG--NPA---PQAFDDAIYAWKTGYFEGESVFQAQDPGGVIVAPPNVG 157
TraH_2 pfam06871
TraH_2; This family consists of several TraH proteins which seem to be specific to ...
 1-76 3.65e-22

TraH_2; This family consists of several TraH proteins which seem to be specific to Agrobacterium and Rhizobium species. This protein is thought to be involved in conjugal transfer but its function is unknown. This family does not appear to be related to pfam06122.


Pssm-ID: 429166  Cd Length: 208  Bit Score: 84.64  E-value: 3.65e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1150797581   1 MFDAHSNLRMSTALVAKVARIVTKWYGRWTNQEVLPQMIDDTTYAWRTGVFEATRVFHAEDPGGPTfiggnLRKPD 76
Cdd:pfam06871  91 LIDACANIKMGTALFAKVYRIVTKWYGNPADSEVLPQAFEDAIEAWKTGYFDGKAVFDAADPGDLK-----LPEGA 161
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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