RNA-directed DNA polymerase [Staphylococcus aureus]
RNA-directed DNA polymerase( domain architecture ID 10108233)
RNA-directed DNA polymerase catalyzes DNA replication from an RNA template of bacterial retrotransposons or retrons
List of domain hits
Name | Accession | Description | Interval | E-value | |||
RT_Bac_retron_I | cd01646 | RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The ... |
1-100 | 2.16e-21 | |||
RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome. : Pssm-ID: 238824 [Multi-domain] Cd Length: 158 Bit Score: 89.70 E-value: 2.16e-21
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Name | Accession | Description | Interval | E-value | |||
RT_Bac_retron_I | cd01646 | RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The ... |
1-100 | 2.16e-21 | |||
RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome. Pssm-ID: 238824 [Multi-domain] Cd Length: 158 Bit Score: 89.70 E-value: 2.16e-21
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YkfC | COG3344 | Retron-type reverse transcriptase [Mobilome: prophages, transposons]; |
2-75 | 6.10e-08 | |||
Retron-type reverse transcriptase [Mobilome: prophages, transposons]; Pssm-ID: 442573 [Multi-domain] Cd Length: 434 Bit Score: 54.31 E-value: 6.10e-08
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group_II_RT_mat | TIGR04416 | group II intron reverse transcriptase/maturase; Members of this protein family are ... |
2-108 | 5.06e-05 | |||
group II intron reverse transcriptase/maturase; Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other] Pssm-ID: 275209 [Multi-domain] Cd Length: 354 Bit Score: 44.76 E-value: 5.06e-05
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RVT_1 | pfam00078 | Reverse transcriptase (RNA-dependent DNA polymerase); A reverse transcriptase gene is usually ... |
1-72 | 3.70e-04 | |||
Reverse transcriptase (RNA-dependent DNA polymerase); A reverse transcriptase gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. Pssm-ID: 395031 [Multi-domain] Cd Length: 189 Bit Score: 41.13 E-value: 3.70e-04
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Name | Accession | Description | Interval | E-value | |||
RT_Bac_retron_I | cd01646 | RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The ... |
1-100 | 2.16e-21 | |||
RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome. Pssm-ID: 238824 [Multi-domain] Cd Length: 158 Bit Score: 89.70 E-value: 2.16e-21
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YkfC | COG3344 | Retron-type reverse transcriptase [Mobilome: prophages, transposons]; |
2-75 | 6.10e-08 | |||
Retron-type reverse transcriptase [Mobilome: prophages, transposons]; Pssm-ID: 442573 [Multi-domain] Cd Length: 434 Bit Score: 54.31 E-value: 6.10e-08
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RT_Bac_retron_II | cd03487 | RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The ... |
2-72 | 4.23e-06 | |||
RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome. Pssm-ID: 239569 [Multi-domain] Cd Length: 214 Bit Score: 47.18 E-value: 4.23e-06
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group_II_RT_mat | TIGR04416 | group II intron reverse transcriptase/maturase; Members of this protein family are ... |
2-108 | 5.06e-05 | |||
group II intron reverse transcriptase/maturase; Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other] Pssm-ID: 275209 [Multi-domain] Cd Length: 354 Bit Score: 44.76 E-value: 5.06e-05
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RVT_1 | pfam00078 | Reverse transcriptase (RNA-dependent DNA polymerase); A reverse transcriptase gene is usually ... |
1-72 | 3.70e-04 | |||
Reverse transcriptase (RNA-dependent DNA polymerase); A reverse transcriptase gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. Pssm-ID: 395031 [Multi-domain] Cd Length: 189 Bit Score: 41.13 E-value: 3.70e-04
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Blast search parameters | ||||
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