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Conserved domains on  [gi|1153887946|ref|WP_078407190|]
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TonB-dependent receptor [Elizabethkingia anophelis]

Protein Classification

TonB-dependent receptor( domain architecture ID 12154327)

TonB-dependent receptor acts as a channel to allow import of extracellular nutrients, such as iron-siderophore complexes or non-Fe compounds

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CirA COG1629
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
108-761 1.24e-45

Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];


:

Pssm-ID: 441236 [Multi-domain]  Cd Length: 644  Bit Score: 173.86  E-value: 1.24e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 108 VEEVTVHGKGKVKALQDGAFTVNAIDIAKLANTTA-DLNQVLNRTTGIKVRQQGGVGSdyNFSINGMSGKA--VKFFIDG 184
Cdd:COG1629     1 LEEVVVTATRTDESLQDVPGSVSVISREQLEDQPAtDLGDLLRRVPGVSVTSAGGGAG--QISIRGFGGGGnrVLVLVDG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 185 VPLEMLGKGV-DLSTLPVNMADRVEIYKGVVPVHLSTDAMGGAVNIISPSA-SKNYLDAGISVGSFNTQRINLNGQIKDD 262
Cdd:COG1629    79 VPLNDPSGGDgGLSYIDPEDIERVEVLRGPSSALYGSGALGGVINIVTKKPkDGKGGEVSASYGSYGTYRASLSLSGGNG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 263 KTGiiLRINSFYNHSDNNYTMKDMKIWNA-GKNEYELRNVKRFNdryqsvfgmAEAGVENKKWADYFFVGMSQSVFDKQV 341
Cdd:COG1629   159 KLA--YRLSASYRDSDGYRDNSDSDRYNLrAKLGYQLGDDTRLT---------LSASYSDSDQDSPGYLTLAALRPRGAM 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 342 QTGSNQevvYGGVKQNGQAHNYFMKYkKANLFNDRLDLNVYAGFSKSVQKATDTLMRKYSWDGTFEPSassekggksimm 421
Cdd:COG1629   228 DDGTNP---YSNDTDDNTRDRYSLSL-EYEHLGDGLKLSASAYYRYDDTDLDSDFTPTPADGGTLEQT------------ 291

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 422 QYEDRVYSQ-LGATYRLANHHKLIFNYVLDYIKNTTFNS---------LDEKKEDVPPAKMTKQIFSIAYQQDL-FNKHW 490
Cdd:COG1629   292 DFDNRTYGLeLRLTYDLGFGGKHTLLVGLDYQRQDLDGSgypldlgsgSLPTLTSGADDDGTTTSLALYAQDTYkLTDKL 371

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 491 TNVFFGKYYRVGLQKMVFDQATRTDNpVKDNFSSWGYGFATTVKIVKGLGAKGSFERSYRLVEPQEIFGDGVAVTS--NM 568
Cdd:COG1629   372 TLTAGLRYDYVSYDVDDTVTGTDSAS-GSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGELYANGTDPYSvgNP 450

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 569 NLKPETSNNVNVGlyYNHHWGAHAFRVEGAGYIRDTKDFIYTVPNLYNSTF--KYENLSNIFTRGLEGELSYQYKRLLNV 646
Cdd:COG1629   451 DLKPETSTNYELG--LRYRLLDGRLSLSLALFYSDVDNEILSVPLPNDSGFstYYTNAGKARSYGVELELSYQLTPGLSL 528

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 647 LMNISYNKAYdNTKFANNNEevisATYKKDVPNQPWLFGNVNVSLckdDWLQKdsrveLYYGLqmtEWFYKNWQSYGNPR 726
Cdd:COG1629   529 NASYSYTDAK-FDDDTDGSA----DLDGNRLPGVPPLTANLGLTY---EFPGG-----WSLGL---GVRYVGDRYLDDAN 592

                         650       660       670
                  ....*....|....*....|....*....|....*
gi 1153887946 727 NIPVIPRQTLHNIGISYSMKNgRYNLAFDVTNLGD 761
Cdd:COG1629   593 TQGAPGGYTLVDLGAGYRFGD-NLTLSLGVDNLFD 626
CarbopepD_reg_2 pfam13715
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ...
 29-113 1.22e-16

CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.


:

Pssm-ID: 433425 [Multi-domain]  Cd Length: 88  Bit Score: 75.32  E-value: 1.22e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946  29 IQGVVQD-HSKRGLSGVNIFVENTKIKTQTDQNGNFRITY-KKGEATLVFSLDGYKKFRKKVNFSN-ETAAVTIQLADDQ 105
Cdd:pfam13715   1 ISGTVVDeNTGEPLPGATVYVKGTTKGTVTDADGNFELKNlPAGTYTLVVSFVGYKTQEKKVTVSNdNTLDVNFLLKEDA 80


                  ....*...
gi 1153887946 106 SVVEEVTV 113
Cdd:pfam13715  81 LLLDEVVV 88
 
Name Accession Description Interval E-value
CirA COG1629
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
108-761 1.24e-45

Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];


Pssm-ID: 441236 [Multi-domain]  Cd Length: 644  Bit Score: 173.86  E-value: 1.24e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 108 VEEVTVHGKGKVKALQDGAFTVNAIDIAKLANTTA-DLNQVLNRTTGIKVRQQGGVGSdyNFSINGMSGKA--VKFFIDG 184
Cdd:COG1629     1 LEEVVVTATRTDESLQDVPGSVSVISREQLEDQPAtDLGDLLRRVPGVSVTSAGGGAG--QISIRGFGGGGnrVLVLVDG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 185 VPLEMLGKGV-DLSTLPVNMADRVEIYKGVVPVHLSTDAMGGAVNIISPSA-SKNYLDAGISVGSFNTQRINLNGQIKDD 262
Cdd:COG1629    79 VPLNDPSGGDgGLSYIDPEDIERVEVLRGPSSALYGSGALGGVINIVTKKPkDGKGGEVSASYGSYGTYRASLSLSGGNG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 263 KTGiiLRINSFYNHSDNNYTMKDMKIWNA-GKNEYELRNVKRFNdryqsvfgmAEAGVENKKWADYFFVGMSQSVFDKQV 341
Cdd:COG1629   159 KLA--YRLSASYRDSDGYRDNSDSDRYNLrAKLGYQLGDDTRLT---------LSASYSDSDQDSPGYLTLAALRPRGAM 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 342 QTGSNQevvYGGVKQNGQAHNYFMKYkKANLFNDRLDLNVYAGFSKSVQKATDTLMRKYSWDGTFEPSassekggksimm 421
Cdd:COG1629   228 DDGTNP---YSNDTDDNTRDRYSLSL-EYEHLGDGLKLSASAYYRYDDTDLDSDFTPTPADGGTLEQT------------ 291

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 422 QYEDRVYSQ-LGATYRLANHHKLIFNYVLDYIKNTTFNS---------LDEKKEDVPPAKMTKQIFSIAYQQDL-FNKHW 490
Cdd:COG1629   292 DFDNRTYGLeLRLTYDLGFGGKHTLLVGLDYQRQDLDGSgypldlgsgSLPTLTSGADDDGTTTSLALYAQDTYkLTDKL 371

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 491 TNVFFGKYYRVGLQKMVFDQATRTDNpVKDNFSSWGYGFATTVKIVKGLGAKGSFERSYRLVEPQEIFGDGVAVTS--NM 568
Cdd:COG1629   372 TLTAGLRYDYVSYDVDDTVTGTDSAS-GSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGELYANGTDPYSvgNP 450

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 569 NLKPETSNNVNVGlyYNHHWGAHAFRVEGAGYIRDTKDFIYTVPNLYNSTF--KYENLSNIFTRGLEGELSYQYKRLLNV 646
Cdd:COG1629   451 DLKPETSTNYELG--LRYRLLDGRLSLSLALFYSDVDNEILSVPLPNDSGFstYYTNAGKARSYGVELELSYQLTPGLSL 528

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 647 LMNISYNKAYdNTKFANNNEevisATYKKDVPNQPWLFGNVNVSLckdDWLQKdsrveLYYGLqmtEWFYKNWQSYGNPR 726
Cdd:COG1629   529 NASYSYTDAK-FDDDTDGSA----DLDGNRLPGVPPLTANLGLTY---EFPGG-----WSLGL---GVRYVGDRYLDDAN 592

                         650       660       670
                  ....*....|....*....|....*....|....*
gi 1153887946 727 NIPVIPRQTLHNIGISYSMKNgRYNLAFDVTNLGD 761
Cdd:COG1629   593 TQGAPGGYTLVDLGAGYRFGD-NLTLSLGVDNLFD 626
ligand_gated_channel cd01347
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ...
 128-783 2.84e-33

TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.


Pssm-ID: 238657 [Multi-domain]  Cd Length: 635  Bit Score: 136.43  E-value: 2.84e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 128 TVNAIDIAKLANTTA-DLNQVLNRTTGIKVRQQGGVGSDyNFSINGMSGKAVKFFIDGVPL--EMLGKGVDLSTLPVNMA 204
Cdd:cd01347     1 SVSVITAEDIEKQPAtSLADLLRRIPGVSVTRGGGGGGS-TISIRGFGPDRTLVLVDGLPLasSNYGRGVDLNTIPPELI 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 205 DRVEIYKGVVPVHLSTDAMGGAVNIISPSASKN-----YLDAGI-SVGSFNTQRINLNGQIKDDKTGiilRINSFYNHSD 278
Cdd:cd01347    80 ERVEVLKGPSSALYGSGAIGGVVNIITKRPTDEfggsvTAGYGSdNSGSSGGGGFDVSGALADDGAF---GARLYGAYRD 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 279 NNYTMKDMKIWNAGKNEYELRNVK---RFNDRYQSVFGMaeagveNKKWADYFFVGMSQSVFDKQVQTGSNQEVVYGGVK 355
Cdd:cd01347   157 GDGTIDGDGQADDSDEERYNVAGKldwRPDDDTRLTLDA------GYQDQDADGPGGTLPANGTGSSLGGGPSSNTNGDR 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 356 QNGQAHNYF---MKYKKANLFNDRLDLNVYAGFSKSVQKATDTlmrkYSWDGTFEPSASSEKGGKSIMMQYEDR-VYSQL 431
Cdd:cd01347   231 DWDYRDRYRkraSLGLEHDLNDTGWTLRANLSYSYTDNDGDPL----ILNGGNNAAGGDLGRSGYSSERDTTQLgFDAGL 306

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 432 GATYRLAN-HHKLIFNYvlDYIKnttfnslDEKKEDVppakmtkqifSIAYQQD--LFNKHWTNVFFGKYYRVglqKMVF 508
Cdd:cd01347   307 NAPFGTGPvAHTLTLGV--EYRR-------EELDEKQ----------TALYAQDtiELTDDLTLTLGLRYDHY---DQDS 364

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 509 DQATRTDNPVKDNFSSWGYGFATTVKIVKGLGAKGSFERSYRLVEPQEIFGDGV----AVTSNMNLKPETSNNVNVGLYY 584
Cdd:cd01347   365 KDTIAGGTTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLGELYGGGShggtAAVGNPNLKPEKSKQYELGLKY 444

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 585 NHHWGahaFRVEGAGYIRDTKDFIYTVPNLY--NSTFKYENLSNIFTRGLEGELSYQYKRLLNVLMNISYNKAYDNtkfa 662
Cdd:cd01347   445 DPGDG---LTLSAALFRIDIKNEIVSTPTNTglGLVTVYVNGGKARIRGVELEASYDLTDGLGLTGSYTYTDTEVK---- 517

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 663 nnneEVISATYKKDVPNQPWLFGNVNVslckdDWLQKDSRVELYYGLQmteWFYKNWQSYGNPRNIPVIPRQTLHNIGIS 742
Cdd:cd01347   518 ----RTDGATTGNRLPGIPKHTANLGL-----DYELPDEGLTAGGGVR---YRGKQYADTANGNNTVKVPGYTLVDLSAS 585

                         650       660       670       680
                  ....*....|....*....|....*....|....*....|....*....
gi 1153887946 743 YSMKNGrYNLAFDVTNLGD--------ALAYDNFKLQKQGRAFYLKFRY 783
Cdd:cd01347   586 YQFTKN-LTLRLGVNNLFDkdyytslsVRGSGLYGYYGPGRTYYLSVSY 633
TonB-siderophor TIGR01783
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ...
 126-783 7.46e-18

TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]


Pssm-ID: 273805 [Multi-domain]  Cd Length: 651  Bit Score: 88.24  E-value: 7.46e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 126 AFTVNAIDIAKLANTTA-DLNQVLNRTTGIKVRQQGGVGSDYNFSINGMSGKA--VKFFIDGVPLemlgkGVDLSTLPVN 202
Cdd:TIGR01783   3 PQSVSVITRQELEDQQAgSLSEALQRVPGVVVGGSGGTTQFGNITIRGFGLEVdiDNVYLDGVPL-----LSRGNLAIVD 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 203 MA--DRVEIYKGVVPVHLSTDAMGGAVNIIS---PSASKNYLDAGisVGSFNTQR--INLNGQIKDDKTgIILRINSFYN 275
Cdd:TIGR01783  78 PAmvERVEVLRGPASLLYGGSAPGGVINIVTkrpQDEPKGSVTFG--AGTRSGYRtaFDLGGPLGADGT-FRGRLNGARQ 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 276 HSDNNYTMKDMKIwNAGKNEYELRN----VKRFNDRYQSVFGMAeagvenkkwaDYFFVGMSQSVFDKQVQTGSNQevvy 351
Cdd:TIGR01783 155 DGDSFYDGAGEET-RLGATATDWQLddrtLLRLGAYYQKERDRG----------GYGGLPASGGTSGRDLSSDRYL---- 219

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 352 gGVKQNgqaHNYF-MKYKKA-----NLFNDRLDLNVYAGFSKSVQKATDTLMRKYSWDGTFEPSASSEKGGKSImmqyED 425
Cdd:TIGR01783 220 -GTSSN---RNYDdREYLSYglsleYQFNDVWTGKQNLRYSYFDTDSNQVQASGYSSDGGLFGRSLTVVNVKQD----RV 291

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 426 RVYSQLGATYRLANH-HKLIFNYV------------------LDYIKNTTFNSLDEKKEDVPPAKMTKQ-IFSIAYQQD- 484
Cdd:TIGR01783 292 QIDAGLDGEFETGPIeHDLLLGVSygqrttnrfnntgypsdnIYSLTATSSARTDIGDSPKDRALSSTTkALNGVALQRi 371

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 485 LFNKHWTNVFFGKYYRVglqKMVFDQAtRTDNPVKDNFSSWGYGFATTVKIVKGLGAKGSFERSYRlvePQEIFGDGVAV 564
Cdd:TIGR01783 372 LLADKWTLTLGGRYDSV---DVKSNNG-VAGSTGKRDDSQFTPSLGVAYKPTDDWSLYASYAESFK---PGGYYPKGAGN 444

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 565 TSNmNLKPETSNNVNVGLYYNhhWGAHaFRVEGAGYIRDTKDFIYTVPNlyNSTFkYENLSNIFTRGLEGELSYQYKRLL 644
Cdd:TIGR01783 445 SGD-ILEPEKGKNYELGVRYD--LGDS-LLATAALFRITKDNQLVQDPV--NGTF-SVNAGKTRNRGVELEARGYLTPGL 517

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 645 NVLMNISYNKAydntKFannNEEVISATYKKDVPNQPWLFGNVNVSLCKDDWLqkdsrvelyygLQMTEWFYKNWQS--Y 722
Cdd:TIGR01783 518 SLSAGYTYTDA----EF---TEDTNGDTQGNTVPFVPKHTASLWASYAPPVGD-----------NGLTLGGGVQYTGkaY 579

                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 723 GNPRNIPVIPRQTLHNIGISYSM-KNGRYNLAFDVTNLGD----ALAYDN----FKLQKQGRAFYLKFRY 783
Cdd:TIGR01783 580 VDGGNTGKVPSYTVVDLSVRYDLtKKKNLTLALNVNNLFDrdyyTSGYRWgpsaYIYPGAPRTVGLSVSY 649
CarbopepD_reg_2 pfam13715
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ...
 29-113 1.22e-16

CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.


Pssm-ID: 433425 [Multi-domain]  Cd Length: 88  Bit Score: 75.32  E-value: 1.22e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946  29 IQGVVQD-HSKRGLSGVNIFVENTKIKTQTDQNGNFRITY-KKGEATLVFSLDGYKKFRKKVNFSN-ETAAVTIQLADDQ 105
Cdd:pfam13715   1 ISGTVVDeNTGEPLPGATVYVKGTTKGTVTDADGNFELKNlPAGTYTLVVSFVGYKTQEKKVTVSNdNTLDVNFLLKEDA 80


                  ....*...
gi 1153887946 106 SVVEEVTV 113
Cdd:pfam13715  81 LLLDEVVV 88
Plug pfam07715
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ...
 121-226 3.34e-15

TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.


Pssm-ID: 462243 [Multi-domain]  Cd Length: 107  Bit Score: 71.92  E-value: 3.34e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 121 ALQDGAFTVNAIDIAKLANTTA-DLNQVLNRTTGIKVRQQGGVGSDyNFSINGMSGKAVKFFIDGVPLEMLGKG-VDLST 198
Cdd:pfam07715   1 DLRDTPGSVSVVTAEDIEDQGAtNLADALRGVPGVSVSSGGGGGGS-SISIRGFGSNRVLVLVDGVPLNSGGGGsVDLNS 79

                          90       100
                  ....*....|....*....|....*...
gi 1153887946 199 LPVNMADRVEIYKGVVPVHLSTDAMGGA 226
Cdd:pfam07715  80 IDPEDIERVEVLKGPASALYGSGAIGGV 107
btuB PRK10641
TonB-dependent vitamin B12 receptor BtuB;
143-251 6.64e-09

TonB-dependent vitamin B12 receptor BtuB;


Pssm-ID: 236730 [Multi-domain]  Cd Length: 614  Bit Score: 59.24  E-value: 6.64e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 143 DLNQVLNRTTGIKVRQQGGVGSDYNFSINGMSGKAVKFFIDGVPLEMLG--KGVDLSTLPVNMADRVEIYKGVVPVHLST 220
Cdd:PRK10641   61 SVNDVLRRLPGVDIAQNGGLGQLSSLFIRGTNSSHVLVLIDGVRLNQAGisGSADLSQIPISLVQRIEYIRGPRSAVYGS 140

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1153887946 221 DAMGGAVNIISPSASK-NYLDAGIsvGSFNTQ 251
Cdd:PRK10641  141 DAIGGVVNIITTRDKPgTTLSAGW--GSNGYQ 170
 
Name Accession Description Interval E-value
CirA COG1629
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
108-761 1.24e-45

Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];


Pssm-ID: 441236 [Multi-domain]  Cd Length: 644  Bit Score: 173.86  E-value: 1.24e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 108 VEEVTVHGKGKVKALQDGAFTVNAIDIAKLANTTA-DLNQVLNRTTGIKVRQQGGVGSdyNFSINGMSGKA--VKFFIDG 184
Cdd:COG1629     1 LEEVVVTATRTDESLQDVPGSVSVISREQLEDQPAtDLGDLLRRVPGVSVTSAGGGAG--QISIRGFGGGGnrVLVLVDG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 185 VPLEMLGKGV-DLSTLPVNMADRVEIYKGVVPVHLSTDAMGGAVNIISPSA-SKNYLDAGISVGSFNTQRINLNGQIKDD 262
Cdd:COG1629    79 VPLNDPSGGDgGLSYIDPEDIERVEVLRGPSSALYGSGALGGVINIVTKKPkDGKGGEVSASYGSYGTYRASLSLSGGNG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 263 KTGiiLRINSFYNHSDNNYTMKDMKIWNA-GKNEYELRNVKRFNdryqsvfgmAEAGVENKKWADYFFVGMSQSVFDKQV 341
Cdd:COG1629   159 KLA--YRLSASYRDSDGYRDNSDSDRYNLrAKLGYQLGDDTRLT---------LSASYSDSDQDSPGYLTLAALRPRGAM 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 342 QTGSNQevvYGGVKQNGQAHNYFMKYkKANLFNDRLDLNVYAGFSKSVQKATDTLMRKYSWDGTFEPSassekggksimm 421
Cdd:COG1629   228 DDGTNP---YSNDTDDNTRDRYSLSL-EYEHLGDGLKLSASAYYRYDDTDLDSDFTPTPADGGTLEQT------------ 291

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 422 QYEDRVYSQ-LGATYRLANHHKLIFNYVLDYIKNTTFNS---------LDEKKEDVPPAKMTKQIFSIAYQQDL-FNKHW 490
Cdd:COG1629   292 DFDNRTYGLeLRLTYDLGFGGKHTLLVGLDYQRQDLDGSgypldlgsgSLPTLTSGADDDGTTTSLALYAQDTYkLTDKL 371

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 491 TNVFFGKYYRVGLQKMVFDQATRTDNpVKDNFSSWGYGFATTVKIVKGLGAKGSFERSYRLVEPQEIFGDGVAVTS--NM 568
Cdd:COG1629   372 TLTAGLRYDYVSYDVDDTVTGTDSAS-GSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGELYANGTDPYSvgNP 450

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 569 NLKPETSNNVNVGlyYNHHWGAHAFRVEGAGYIRDTKDFIYTVPNLYNSTF--KYENLSNIFTRGLEGELSYQYKRLLNV 646
Cdd:COG1629   451 DLKPETSTNYELG--LRYRLLDGRLSLSLALFYSDVDNEILSVPLPNDSGFstYYTNAGKARSYGVELELSYQLTPGLSL 528

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 647 LMNISYNKAYdNTKFANNNEevisATYKKDVPNQPWLFGNVNVSLckdDWLQKdsrveLYYGLqmtEWFYKNWQSYGNPR 726
Cdd:COG1629   529 NASYSYTDAK-FDDDTDGSA----DLDGNRLPGVPPLTANLGLTY---EFPGG-----WSLGL---GVRYVGDRYLDDAN 592

                         650       660       670
                  ....*....|....*....|....*....|....*
gi 1153887946 727 NIPVIPRQTLHNIGISYSMKNgRYNLAFDVTNLGD 761
Cdd:COG1629   593 TQGAPGGYTLVDLGAGYRFGD-NLTLSLGVDNLFD 626
FepA COG4771
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ...
 94-748 4.98e-44

Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];


Pssm-ID: 443803 [Multi-domain]  Cd Length: 612  Bit Score: 168.50  E-value: 4.98e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946  94 TAAVTIQLADDQSVVEEVTVHGKGKVKALQDGAFTVNAIDIAKLANTTA-DLNQVLNRTTGIKVRQQGGVGSDYNFSING 172
Cdd:COG4771    13 AAQAADALAEDATELEEVVVTATRTEQSLSDAPASVSVITAEEIEKLGAtDLADALRLLPGVSVTRSGGRGGSSGISIRG 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 173 MSGKAVKFFIDGVPL--EMLGKGVDLSTLPVNMADRVEIYKGVVPVHLSTDAMGGAVNIISPSASKNYL-DAGISVGSFN 249
Cdd:COG4771    93 LGGDRVLVLIDGVPVnnPALGGGGDLSYIPPDDIERIEVIRGPASALYGSDAIGGVINIITKKPTDELEgSVSLGYGSNG 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 250 TQRINLNGQI--KDDKTGIILrinsFYNHSDNNYTMKDMKIWNAGKNEYELRNVK-----RFNDRYQSVFGMaeAGVENK 322
Cdd:COG4771   173 NGTYSGSLSLggPGDKLSFLL----SGSYRDRDGYLDYRNGGFVGNSGYERYNLNaklgyRLSDNHRLSLSG--GYSRQD 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 323 KWADYFFVGMSQSVFDKQVQTGSNQEVVYGGVKQNGQahnyfmkykkanlFNDRLDLNVYagFSKSVQKATDTLMRKYsw 402
Cdd:COG4771   247 RDGGPPTLGDTEISSDNAGDRDTTTDRGNYSLRYNGD-------------LGDNLDLSLY--YSRTDRDSTNGSLGGS-- 309

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 403 DGTFEPSASSEKGGKsimmqyedrvysqLGATYRLANHHKLIF--NYVLDYIKNTTFNSLDEKKEDvppakmtkqIFSIA 480
Cdd:COG4771   310 TGSFSDSDDTTYGLE-------------LDLTYPLGGNHTLTLgaEYRYDDLDSSSFLGGADASRD---------TYGLF 367

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 481 YQQDLFNKHWTNVFFGkyYRvglqkmvFDQATRTDNPVKDNFSswgYGFATTVKIVKGLGAKGSFERSYRLVEPQEIFGD 560
Cdd:COG4771   368 AQDEWKLTDKLTLTAG--LR-------YDYYSTFGASNYTAFS---PRLGLRYDLSDNLTLRASYGRGFRAPSLAELYGS 435

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 561 GVA-----VTSNMNLKPETSNNVNVGLYYNhhWGAHAFRVEGAGYIRDTKDFIYTV--PNLYNSTFKYENLSNIFTRGLE 633
Cdd:COG4771   436 GTGtpgryVLGNPDLKPETSDNYELGLEYR--LGNGGLSLSLTGFYTDIKDLIVLVpvGPGPGDVLQYENVGKARTYGLE 513

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 634 GELSYQYKRLLNVLMNISYNKAYDNTkfannneevisATYKKDVPNQPWLFGNVNVSLCKDDWLqkdsrvelyYGLQMTE 713
Cdd:COG4771   514 LELKYRLGKGLTLTASYTYLDSKIDD-----------GDTGEPLPNVPPHKANLGLDYRLPKWW---------LLLLLTR 573

                         650       660       670
                  ....*....|....*....|....*....|....*
gi 1153887946 714 WFYKNWQSYGNPRNIPVIPRQTLHNIGISYSMKNG 748
Cdd:COG4771   574 YYGGRYVTPPSGRLEGYTPGYTLLDLRASYKLTKN 608
BtuB COG4206
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
111-405 1.31e-33

Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];


Pssm-ID: 443355 [Multi-domain]  Cd Length: 276  Bit Score: 130.38  E-value: 1.31e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 111 VTVHGKGKVKALQDGAFTVNAIDIAKLANT-TADLNQVLNRTTGIKVRQQGGVGSDYNFSINGMSGKAVKFFIDGVPLEM 189
Cdd:COG4206     1 VVVTATRLEQSKSDLTGSVTVIDAEELERSgATSLADALRRVPGVQVSSSGGPGSAASISIRGLGSNQTLVLIDGVPLND 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 190 LGKG-VDLSTLPVNMADRVEIYKGVVPVHLSTDAMGGAVNIISPSASKNY-LDAGISVGSFNTQRINLNGQIKDDKTGii 267
Cdd:COG4206    81 PSLGgVDLSLIPPDDIERIEVLKGAASALYGSDAIGGVINITTKKGKKGFkGSVSASYGSFGTRRLSASLSGGAGKFS-- 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 268 LRINSFYNHSDnNYTMKDmkiwnagkneyelrNVKRFNDRYQSVFGMAEAGVenkKWADYFFVGMSQSVFDKQVQtgsnq 347
Cdd:COG4206   159 YSLSASYRRSD-GYRYND--------------PDLRNNDGYENTSLNARLGY---KLGDNGSLSLSGGYSDSERG----- 215

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1153887946 348 evvYGGVKQNGQAHNYFMKYKKANLFNDRLDLNVYAGFSKSVQKATDTLMRKYSWDGT 405
Cdd:COG4206   216 ---YPGAVGSDRNLRLSLSLEYKLSDGWSLLLLAYYYYDRDYEDGGGDSAGTSNTDGA 270
ligand_gated_channel cd01347
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ...
 128-783 2.84e-33

TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.


Pssm-ID: 238657 [Multi-domain]  Cd Length: 635  Bit Score: 136.43  E-value: 2.84e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 128 TVNAIDIAKLANTTA-DLNQVLNRTTGIKVRQQGGVGSDyNFSINGMSGKAVKFFIDGVPL--EMLGKGVDLSTLPVNMA 204
Cdd:cd01347     1 SVSVITAEDIEKQPAtSLADLLRRIPGVSVTRGGGGGGS-TISIRGFGPDRTLVLVDGLPLasSNYGRGVDLNTIPPELI 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 205 DRVEIYKGVVPVHLSTDAMGGAVNIISPSASKN-----YLDAGI-SVGSFNTQRINLNGQIKDDKTGiilRINSFYNHSD 278
Cdd:cd01347    80 ERVEVLKGPSSALYGSGAIGGVVNIITKRPTDEfggsvTAGYGSdNSGSSGGGGFDVSGALADDGAF---GARLYGAYRD 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 279 NNYTMKDMKIWNAGKNEYELRNVK---RFNDRYQSVFGMaeagveNKKWADYFFVGMSQSVFDKQVQTGSNQEVVYGGVK 355
Cdd:cd01347   157 GDGTIDGDGQADDSDEERYNVAGKldwRPDDDTRLTLDA------GYQDQDADGPGGTLPANGTGSSLGGGPSSNTNGDR 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 356 QNGQAHNYF---MKYKKANLFNDRLDLNVYAGFSKSVQKATDTlmrkYSWDGTFEPSASSEKGGKSIMMQYEDR-VYSQL 431
Cdd:cd01347   231 DWDYRDRYRkraSLGLEHDLNDTGWTLRANLSYSYTDNDGDPL----ILNGGNNAAGGDLGRSGYSSERDTTQLgFDAGL 306

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 432 GATYRLAN-HHKLIFNYvlDYIKnttfnslDEKKEDVppakmtkqifSIAYQQD--LFNKHWTNVFFGKYYRVglqKMVF 508
Cdd:cd01347   307 NAPFGTGPvAHTLTLGV--EYRR-------EELDEKQ----------TALYAQDtiELTDDLTLTLGLRYDHY---DQDS 364

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 509 DQATRTDNPVKDNFSSWGYGFATTVKIVKGLGAKGSFERSYRLVEPQEIFGDGV----AVTSNMNLKPETSNNVNVGLYY 584
Cdd:cd01347   365 KDTIAGGTTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLGELYGGGShggtAAVGNPNLKPEKSKQYELGLKY 444

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 585 NHHWGahaFRVEGAGYIRDTKDFIYTVPNLY--NSTFKYENLSNIFTRGLEGELSYQYKRLLNVLMNISYNKAYDNtkfa 662
Cdd:cd01347   445 DPGDG---LTLSAALFRIDIKNEIVSTPTNTglGLVTVYVNGGKARIRGVELEASYDLTDGLGLTGSYTYTDTEVK---- 517

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 663 nnneEVISATYKKDVPNQPWLFGNVNVslckdDWLQKDSRVELYYGLQmteWFYKNWQSYGNPRNIPVIPRQTLHNIGIS 742
Cdd:cd01347   518 ----RTDGATTGNRLPGIPKHTANLGL-----DYELPDEGLTAGGGVR---YRGKQYADTANGNNTVKVPGYTLVDLSAS 585

                         650       660       670       680
                  ....*....|....*....|....*....|....*....|....*....
gi 1153887946 743 YSMKNGrYNLAFDVTNLGD--------ALAYDNFKLQKQGRAFYLKFRY 783
Cdd:cd01347   586 YQFTKN-LTLRLGVNNLFDkdyytslsVRGSGLYGYYGPGRTYYLSVSY 633
TonB-siderophor TIGR01783
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ...
 126-783 7.46e-18

TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]


Pssm-ID: 273805 [Multi-domain]  Cd Length: 651  Bit Score: 88.24  E-value: 7.46e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 126 AFTVNAIDIAKLANTTA-DLNQVLNRTTGIKVRQQGGVGSDYNFSINGMSGKA--VKFFIDGVPLemlgkGVDLSTLPVN 202
Cdd:TIGR01783   3 PQSVSVITRQELEDQQAgSLSEALQRVPGVVVGGSGGTTQFGNITIRGFGLEVdiDNVYLDGVPL-----LSRGNLAIVD 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 203 MA--DRVEIYKGVVPVHLSTDAMGGAVNIIS---PSASKNYLDAGisVGSFNTQR--INLNGQIKDDKTgIILRINSFYN 275
Cdd:TIGR01783  78 PAmvERVEVLRGPASLLYGGSAPGGVINIVTkrpQDEPKGSVTFG--AGTRSGYRtaFDLGGPLGADGT-FRGRLNGARQ 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 276 HSDNNYTMKDMKIwNAGKNEYELRN----VKRFNDRYQSVFGMAeagvenkkwaDYFFVGMSQSVFDKQVQTGSNQevvy 351
Cdd:TIGR01783 155 DGDSFYDGAGEET-RLGATATDWQLddrtLLRLGAYYQKERDRG----------GYGGLPASGGTSGRDLSSDRYL---- 219

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 352 gGVKQNgqaHNYF-MKYKKA-----NLFNDRLDLNVYAGFSKSVQKATDTLMRKYSWDGTFEPSASSEKGGKSImmqyED 425
Cdd:TIGR01783 220 -GTSSN---RNYDdREYLSYglsleYQFNDVWTGKQNLRYSYFDTDSNQVQASGYSSDGGLFGRSLTVVNVKQD----RV 291

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 426 RVYSQLGATYRLANH-HKLIFNYV------------------LDYIKNTTFNSLDEKKEDVPPAKMTKQ-IFSIAYQQD- 484
Cdd:TIGR01783 292 QIDAGLDGEFETGPIeHDLLLGVSygqrttnrfnntgypsdnIYSLTATSSARTDIGDSPKDRALSSTTkALNGVALQRi 371

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 485 LFNKHWTNVFFGKYYRVglqKMVFDQAtRTDNPVKDNFSSWGYGFATTVKIVKGLGAKGSFERSYRlvePQEIFGDGVAV 564
Cdd:TIGR01783 372 LLADKWTLTLGGRYDSV---DVKSNNG-VAGSTGKRDDSQFTPSLGVAYKPTDDWSLYASYAESFK---PGGYYPKGAGN 444

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 565 TSNmNLKPETSNNVNVGLYYNhhWGAHaFRVEGAGYIRDTKDFIYTVPNlyNSTFkYENLSNIFTRGLEGELSYQYKRLL 644
Cdd:TIGR01783 445 SGD-ILEPEKGKNYELGVRYD--LGDS-LLATAALFRITKDNQLVQDPV--NGTF-SVNAGKTRNRGVELEARGYLTPGL 517

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 645 NVLMNISYNKAydntKFannNEEVISATYKKDVPNQPWLFGNVNVSLCKDDWLqkdsrvelyygLQMTEWFYKNWQS--Y 722
Cdd:TIGR01783 518 SLSAGYTYTDA----EF---TEDTNGDTQGNTVPFVPKHTASLWASYAPPVGD-----------NGLTLGGGVQYTGkaY 579

                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 723 GNPRNIPVIPRQTLHNIGISYSM-KNGRYNLAFDVTNLGD----ALAYDN----FKLQKQGRAFYLKFRY 783
Cdd:TIGR01783 580 VDGGNTGKVPSYTVVDLSVRYDLtKKKNLTLALNVNNLFDrdyyTSGYRWgpsaYIYPGAPRTVGLSVSY 649
FecA COG4772
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
102-761 1.32e-17

Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];


Pssm-ID: 443804 [Multi-domain]  Cd Length: 681  Bit Score: 87.29  E-value: 1.32e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 102 ADDQSVVEEVTVHGKGKVKA-LQDGAFTVNAIDIAKLANT-TADLNQVLNRTTGIKVRQQGGVGSDYNFSINGM----SG 175
Cdd:COG4772    17 AEAATTLETVVVTGSRAAEArLKDVPGSVSVVDREELENQaATSLREVLRRVPGVNVQEEDGFGLRPNIGIRGLgprrSR 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 176 KaVKFFIDGVPLEM--LGKGVDLSTLPVNMADRVEIYKGVVPVHLSTDAMGGAVNIISPSASKN-YLDAGISVGSFNTQR 252
Cdd:COG4772    97 G-ITLLEDGIPIAPapYGDPAAYYFPDLERMERIEVLRGAAALRYGPQTVGGAINFVTRTIPTAfGGELRVTGGSFGYRR 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 253 INLNGQIKDDKTGIILRIN-----SFYNHSDNNytmkdmkiwnagKNEYELRNVKRFNDRyQSVfgmaeagvenkkwadY 327
Cdd:COG4772   176 THASVGGTVGNFGYLVEYSrkrgdGFRDNSGFD------------INDFNAKLGYRLSDR-QEL---------------T 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 328 FFVGMSQSVfdkqvqtgSNQevvYGGV---------KQNGQAHNYF-MKYKKANL-----FNDRLDLNVYAGFSKSVqka 392
Cdd:COG4772   228 LKFQYYDED--------ANT---PGGLtdaqfdadpRQSYRPADQFdTRRTQLSLryehqLSDNTTLTTTAYYNDFS--- 293

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 393 tdtlmRKYSWDGTFEPSASSEKGGKSIMMQYEDR-VYSQLGATYRLANH-HKLI--FNYVLDYIKNTTFNSLDEKKEDVP 468
Cdd:COG4772   294 -----RNWYIRQNTADPNTPGLGLRGNPRGYRSYgIEPRLTHRFELGGVpHTLEvgLRYHREEEDRKQYVNTYGQGRSGA 368

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 469 PAKmTKQIFSI----AYQQDLFN--KHWT-----NVFFGKYYRVGLQKMVFDQATRTDNpvkdNFSSWGYGFATTVKIVK 537
Cdd:COG4772   369 GLR-RDRRFSAdalaAYAQNRFEltGRLTltpglRYEHIRRDRTDRYSTRTGGDDSGSN----SYSEFLPGLGLLYQLTD 443

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 538 GLGAKGSFERSYRLVEPQEIFgdgVAVTSNMNLKPETSNNVNVGLYYNHHwgaHAFRVEGAGYIRDTKDFIYTVPNLYNS 617
Cdd:COG4772   444 NLQLYANVSRGFEPPTFGDLA---YGNGGNPDLKPEKSWNYELGTRGRIG---NGLSAEVALFYIDYDNELGSCSAAGGD 517

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 618 TFKYENLSNIFTRGLEGELSYQYKRLLNVLMNISYNKAYDNTKFANNNEEVISatyKKDVPNQPWLFGNVNVSLCKDDWl 697
Cdd:COG4772   518 RSTFTNAGETRHQGLELALDYDLLKGGGLGLPLFAAYTYTDAEFTSDFGPVFA---GNRLPYVPRHQLTAGLGYEHGGW- 593

                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1153887946 698 qkDSRVELYYglqMTEWFYKNWQSYGNPRNIPvIPRQTLHNIGISYSMkNGRYNLAFDVTNLGD 761
Cdd:COG4772   594 --TANLNGRY---VSEQFTDAANTVADGSFGK-IPSYTVLDLSASYDF-GKNLSLFAGVNNLFD 650
CarbopepD_reg_2 pfam13715
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ...
 29-113 1.22e-16

CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.


Pssm-ID: 433425 [Multi-domain]  Cd Length: 88  Bit Score: 75.32  E-value: 1.22e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946  29 IQGVVQD-HSKRGLSGVNIFVENTKIKTQTDQNGNFRITY-KKGEATLVFSLDGYKKFRKKVNFSN-ETAAVTIQLADDQ 105
Cdd:pfam13715   1 ISGTVVDeNTGEPLPGATVYVKGTTKGTVTDADGNFELKNlPAGTYTLVVSFVGYKTQEKKVTVSNdNTLDVNFLLKEDA 80


                  ....*...
gi 1153887946 106 SVVEEVTV 113
Cdd:pfam13715  81 LLLDEVVV 88
TonB-hemin TIGR01785
TonB-dependent heme/hemoglobin receptor family protein; This model represents the ...
 109-783 2.28e-16

TonB-dependent heme/hemoglobin receptor family protein; This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]


Pssm-ID: 273807 [Multi-domain]  Cd Length: 665  Bit Score: 83.21  E-value: 2.28e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 109 EEVTVHGKGKVKALQDGAFTVNAIDIAKL-ANTTADLNQVLNRTTGIKVRqqgGVGSDYNFSIN--GMSGKAVKFFIDGV 185
Cdd:TIGR01785   2 DTVTVTATRTRQVLSEAPASVSVISGEQIeSKQANNLADALNTVPGVDVT---GGGRPPGQSINirGLQDNRVLVVVDGA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 186 PL--EMLGKGVDLSTLPVNMADRVEIYKGVVPVHLSTDAMGGAVNIISPSAsKNYL--------DAGISVGSFNTQR--- 252
Cdd:TIGR01785  79 RQnyQRGGAHNGSLFVDPELLKRIEIVKGPSSSLYGSGALGGVVAFRTKDA-ADLLrpgqlfggLAKLSYGSNNNSFggs 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 253 INLNGQIKDDKTGIIlriNSFYNHSDNnytMKDMKIWNAGKNEYELRNVK-------------RFNDRYQSVfgmaeagv 319
Cdd:TIGR01785 158 VAVAGRLDDNLDALV---AATYRDGGN---YRNGNKEEATNSAYVQKNLLaklgwqlddaqrlEFSYFTTEG-------- 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 320 enkKWADYFFVGMSQSVfdkqvQTGSNQEVVYGGVKQNGQAHNYFMKYKKANLFNDRLDLnVYAGFSKSVQKATDTLMRK 399
Cdd:TIGR01785 224 ---SLDEAQNSGPGTEY-----VLGSSSTLLASSTRDRSATLTYNWTPEDNPWLDATASL-YYNRTENDNDRSARGVGRE 294

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 400 YSWDGT---FEPSASSEKggksimmqyedrvysQLGATYRLanhhklifNYVLDYIKNTT------FNSLDEKKEDVPPA 470
Cdd:TIGR01785 295 EGYQYTtygATLQNTSRF---------------DVASWSTL--------TYGVDWMKDKRrtesfdPNSVTTIVPNPPSA 351

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 471 K-MTKQIFSIAyQQDLFNKHWTNVFFGKYYRVGLQkmvfDQATRTDNPVKDNFSSWGYGFATTVKIVKGLGAKGSFERSY 549
Cdd:TIGR01785 352 KeYFFGLFLQD-NIPLLDDRLTLSAGLRYDHYKLS----PKTTADTEAVDRSYSRWSPSLGLSYKPVDWLTLYASYSQGF 426

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 550 RLVEPQEIFGDGVAVT--------SNMNLKPETSNNVNVG--LYYNHHW-GAHAFRVEGAGYIRDTKDFIYTVPNLYNST 618
Cdd:TIGR01785 427 RAPSIDELYGTGDHPGtpggytfaPNPNLKPETSKTWELGanLSFDNLLlDNDQLQFKVAYFYNDVKDFIDLTIGVTDNV 506

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 619 FK-------YENLSNIFTRGLEGELSYQYKRLLNVLmnisynkAYDNTKFANNNEEvisaTYKKDVPNQPWLFGnVNVSL 691
Cdd:TIGR01785 507 TAgmnnitqYVNIDGARIRGIEASASYDAGLWATGL-------SYGYTIGKDQNTN----QWLSNIPPLKLVVT-VGYRF 574

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 692 CKDDWLQ------KDSRVELYYGLQMTEWFYKNWQSYgnprnipviprqTLHNIGISYSMKNGRY-NLAFDVTNLGD--A 762
Cdd:TIGR01785 575 PDRRLDLgakaayYERQSESPTTEDVAANGLLTTPGY------------TVVDLYATYQPNAVKGlTVRFGVNNLTDrkY 642

                         730       740
                  ....*....|....*....|.
gi 1153887946 763 LAYDNFKLQKQGRAFYLKFRY 783
Cdd:TIGR01785 643 TPAQSVPGAGPGRNFKGSVKY 663
Plug pfam07715
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ...
 121-226 3.34e-15

TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.


Pssm-ID: 462243 [Multi-domain]  Cd Length: 107  Bit Score: 71.92  E-value: 3.34e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 121 ALQDGAFTVNAIDIAKLANTTA-DLNQVLNRTTGIKVRQQGGVGSDyNFSINGMSGKAVKFFIDGVPLEMLGKG-VDLST 198
Cdd:pfam07715   1 DLRDTPGSVSVVTAEDIEDQGAtNLADALRGVPGVSVSSGGGGGGS-SISIRGFGSNRVLVLVDGVPLNSGGGGsVDLNS 79

                          90       100
                  ....*....|....*....|....*...
gi 1153887946 199 LPVNMADRVEIYKGVVPVHLSTDAMGGA 226
Cdd:pfam07715  80 IDPEDIERVEVLKGPASALYGSGAIGGV 107
TonB_dep_Rec pfam00593
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
 303-783 1.01e-14

TonB dependent receptor; This model now only covers the conserved part of the barrel structure.


Pssm-ID: 395474 [Multi-domain]  Cd Length: 475  Bit Score: 77.50  E-value: 1.01e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 303 RFNDRYQSVFGMAEAGVENKKWADYFFVGMSQSVFDKQVQTGSNQEVVYGGVKQNGQAHNYFMKYKKAnlFNDRLDLNVY 382
Cdd:pfam00593   3 QLSLDLLGDDTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYDYD--LGDGLSWLST 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 383 AGFSKSVQKATDTLMRKYSWDGTFEPSASSEKGGKSIMMQYEDRVYSQLGATYRLANHHKLiFNYVLDYIKNTTFNSLDE 462
Cdd:pfam00593  81 LRLGLRYSSLDGDYTSNSSGLSGAGDYLSDDRLYGLYGLDGDLELSLDLSHDLLLGVELRT-AGLDYRRLDDDAYDPYDP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 463 KKEDVPPAKMTKQIFSIAYQQDL--FNKHWTNVFFGKYYRVglqKMVFDQATRTDNPVKDNFSSWGYGFATTVKIVKGLG 540
Cdd:pfam00593 160 ANPSSSSYSDTTTDSYGLYLQDNikLTDRLTLTLGLRYDHY---STDGDDGNGGGDNFSRSYSAFSPRLGLVYKPTDNLS 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 541 AKGSFERSYRLVEPQEIF------GDGVAVTSNMNLKPETSNNVNVGLYYNHHWgahaFRVEGAGYIRDTKDFIYTVPN- 613
Cdd:pfam00593 237 LYASYSRGFRAPSLGELYgsgsggGGGAVAGGNPDLKPETSDNYELGLKYDDGR----LSLSLALFYIDIKNLITSDPDg 312

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 614 --LYNSTFKYENLSNIFTRGLEGELSYQYKRLLNVLMNISYNKAYDNTKFANNNeevisatykKDVPNQPWLFGNVNVsl 691
Cdd:pfam00593 313 pgLGGTVYTYTNVGKARIRGVELELSGRLWGLGLSGGGYTYTDADDDADADDTG---------NPLPNVPRHTANLGL-- 381

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 692 ckdDWLQKDSRVELYYGLQmteWFYKNWQSYGNPRNIPVIPRQTLHNIGISYSMKNgRYNLAFDVTNLGDALAYDNFKLQ 771
Cdd:pfam00593 382 ---TYDFPLGGWGARLGAR---YVGSGERRYGDAANTFKTPGYTLVDLSAGYRLNK-NLTLRLGVNNLFDKYYKRYYSSG 454

                         490       500
                  ....*....|....*....|
gi 1153887946 772 K--------QGRAFYLKFRY 783
Cdd:pfam00593 455 GgnlggypgPGRTFYLGLSY 474
OMP_RagA_SusC TIGR04056
TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade ...
 29-212 4.46e-14

TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 274948 [Multi-domain]  Cd Length: 981  Bit Score: 76.47  E-value: 4.46e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946  29 IQGVVQDHSKRGLSGVNIFVENTKIKTQTDQNGNFRITYKKGeATLVFSLDGYKKFRKKVNFSNetaAVTIQLADDQSVV 108
Cdd:TIGR04056   3 VTGVVVDETGEPLIGASVVVKGTTNGTITDIDGNFSLKVPPG-AVLVFSYIGYKTQEVKVKGQK---NLNITLKEDTQEL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 109 EEVTVHGKGKVKALqdgAFT--VNAIDIAKLANT-TADLNQVLN-RTTGIKVRQ-QGGVGSDYNFSINGMS----GKAVK 179
Cdd:TIGR04056  79 DEVVVVGYGTQKKK---SLTgaVSTVKAKELKKVpVSNLSNALQgKVAGVIITQsSGEPGGDAEIWIRGISsfggNNSPL 155

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1153887946 180 FFIDGVPLEmlgkgVDLSTLPVNMADRVEIYKG 212
Cdd:TIGR04056 156 YVIDGVPRD-----NGLSDLNPEDIESISVLKD 183
TonB-hemlactrns TIGR01786
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model ...
 139-761 8.58e-13

TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]


Pssm-ID: 273808 [Multi-domain]  Cd Length: 715  Bit Score: 72.06  E-value: 8.58e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 139 NTTADLNQVLNRTTGIKVRQQGGVGSDyNFSINGMSGKAVKFFIDGVPL-----EMLGKGVDLSTLPVNMADRVEIYKGV 213
Cdd:TIGR01786  36 QQVRNLRDLLRYEPGVSVVEGGRGGSQ-GINIRGLDKNRVAVLVDGIRQntsygGQGSTFYAINSIDPELIKSIEIVKGA 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 214 VPVHLSTDAMGGAVNIISPSAsKNYLDAGISVGSfntqRINLNGQIKDDKTGIILrinSFYNHSDN-----NYTMKDMKi 288
Cdd:TIGR01786 115 SSSLYGSGALGGVVAFRTKDA-ADLLKPGKDLGG----LSKLGYSSANNRFTQSV---AAAGRNDDvdalvQATYRRGH- 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 289 wnagkneyELRNVKRFNDRYQSvfgmaeagvENKKWADYFFVgmSQSVFDK-QVQTGSNQEVVYGGVKQNGQAHNYFMKY 367
Cdd:TIGR01786 186 --------ELKNGNKANIGNES---------KRSKPNPSDYK--SQSFLAKlGWQLNDAHRLGLSLEYTQTDYDEPEMTN 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 368 KkaNLFNDRLDLNVYAGFSKSVQKatDTLMRKYSWDGTFEPSAS-------------------------SEKGGKSIMMQ 422
Cdd:TIGR01786 247 T--SYLTKPLGAPLLSSTVVLGDS--KTRDRRTGLDYELNPDNSwldtvklaldkqyiqlynylnatsaSDYPGVDKNGR 322

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 423 YEDRV-YSQLGATYRLA---NHHKLIFNYVLDYIK-------------NTTFNsLDEKKEDVPPAKmtKQIFSIAYQQDL 485
Cdd:TIGR01786 323 YKDKYdYYTLGFDTNNKiefSVHSLSLTYGLDRFKdkvstgdsrrnlpTAAYN-LYGYEGENRPVK--GSNFGLFLQDNI 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 486 FNKHWTNVFFGkyYRVGLQKMVFDQATRTDNPVKDN-FSSWGYGFATTVKIVKGLGAKGSFERSYRLVEPQEIFGDGVAV 564
Cdd:TIGR01786 400 KLGDWLSLSAG--LRYDHYKTDPKADESKDYGAISKtYSRWSPSLGLTYKPTPWLTLYYSYSQGFRAPSFDELYGTGAHP 477

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 565 TS-------NMNLKPETSNNVNVGLYYNHHWGahafRVEGAGYIRDTKDFI----YTVPNLY------NSTFKYENLSNI 627
Cdd:TIGR01786 478 GGgpytflpNPNLKPETSKNWEIGINLHFDQL----DFKVSYFRNDYKDFIdlgiGVTAKGNmaqvgsNTITNYVNIDNA 553

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 628 FTRGLEGELSYQYKRLLNVL--MNISYNKAYDNTKFANNNEEVISATYKK-------DVPNQPW-LFGNVNvslckddWL 697
Cdd:TIGR01786 554 RIRGIELSGRYDLGSFFSGPdgWTTTLKYGYTKGKDSDTNPWLNAITPLKvvlglgyDHPDEKWgVGLTLT-------FS 626

                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1153887946 698 QKDSRVELYYglqmteWFYKNWQSYGNPRNIPviPRQTLHNIGISYSMKNGrYNLAFDVTNLGD 761
Cdd:TIGR01786 627 GAKDAVDAYA------TYYENGEAAKAGPLRT--PSYTVVDLYGYYKPNKN-LTLRFGVYNLLD 681
Fiu COG4774
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
121-783 3.70e-10

Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];


Pssm-ID: 443806 [Multi-domain]  Cd Length: 639  Bit Score: 63.36  E-value: 3.70e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 121 ALQDGAFTVNAIDIAKLANTTA-DLNQVLNRTTGIKVRQQGGVGSDyNFSINGMSGkAVKFFIDGVPLemlgkgVDLSTL 199
Cdd:COG4774     5 PLLDTPQSVTVVTRELIEDQGAtSLADALRNVPGVTFGAGEGGNGD-SFSIRGFSA-SGDIYVDGLRD------PGQYRR 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 200 PVNMADRVEIYKGvvPVhlSTD----AMGGAVNIIS--PSAsKNYLDAGISVGSFNTQRINL--NGQIkDDKTGIilRIN 271
Cdd:COG4774    77 DTFNLERVEVLKG--PA--SVLygrgSPGGVINLVTkrPTD-EPFTEVTLTYGSDGQRRATLdvNGPL-GDDLAY--RLN 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 272 SFYNHSDNNYTMKDMKIWNAG---------KNEYELrNVKRFNDRYQSVFGM-AEAGVENKKWADYFFVGMSQSVFDKQV 341
Cdd:COG4774   149 GMYRDSDSYRDGVDNDRWGIApsltwrlgdRTRLTL-DYEYQDDDRTPDYGVpAVANGRPVDVDRSTFYGQPDDYSDSET 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 342 QTGSnqevvyggvkqngqahnYFMKYKkanlFNDRLDLNVYAGFSKSVQKATDTLMRKYSWDGTFEPSASSEKggksimm 421
Cdd:COG4774   228 DSAT-----------------LRLEHD----FNDNWTLRNALRYSDYDRDYRNTYPTGGNATGTVTRSAYRRD------- 279

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 422 QYEDRVYSQLGATYRL---ANHHKLIF--------NYVLDYIKNTTFNSLD---------EKKEDVPPAKMTKQIFSIA- 480
Cdd:COG4774   280 QDNDTLSNQTDLTGKFdtgGVKHTLLAgveysredSDNARYSGGGTAPTVNlynpvygapVTGPTLGGADNDSRTDTTGl 359

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 481 YQQDL--FNKHWTNVFFGKYYRVglqKMVFDQATRTDNPVKDNFSSWGYGFATTVKIVKGLGAKGSFERSYrlvEPQeiF 558
Cdd:COG4774   360 YLQDTisLTDRWSLLAGLRYDRF---DTDYTDRTTGATTSSYDDSAFSPRAGLVYKPTPNLSLYASYSTSF---NPG--G 431

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 559 GDGVAVTSNMNLKPETSNNVNVGLYYNhhWGAHAFRVEGAGYiRDTKDFIYTV----PNLYNSTFKYENlsniftRGLEG 634
Cdd:COG4774   432 GAPSLSNAGQALDPEKSRQYEVGVKWD--LLDGRLSLTAALF-RIEKTNVRTTdpanPGVYVQTGEQRS------RGVEL 502

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 635 ELSYQYKRLLNVLMNISYNKA-YDNTKFANNNEevisatykKDVPNQPwlfgNVNVSLckddWLQKDSRVE-LYYGLQMT 712
Cdd:COG4774   503 EATGELTPGWSVLAGYTYLDAeITKSANAANVG--------NRLPNVP----RHSASL----WTTYDLPLPgLTLGGGVR 566

                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1153887946 713 ewfYKNwQSYGNPRNIPVIPRQTLHNIGISYSMkNGRYNLAFDVTNLGD-----ALAYDNFKLQKQGRAFYLKFRY 783
Cdd:COG4774   567 ---YVG-SRYADAANTVKLPSYTRFDAGASYRL-NKNLTLRLNVNNLTDkryyaSAYGSGYVTPGAPRTVLLSASY 637
btuB PRK10641
TonB-dependent vitamin B12 receptor BtuB;
143-251 6.64e-09

TonB-dependent vitamin B12 receptor BtuB;


Pssm-ID: 236730 [Multi-domain]  Cd Length: 614  Bit Score: 59.24  E-value: 6.64e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 143 DLNQVLNRTTGIKVRQQGGVGSDYNFSINGMSGKAVKFFIDGVPLEMLG--KGVDLSTLPVNMADRVEIYKGVVPVHLST 220
Cdd:PRK10641   61 SVNDVLRRLPGVDIAQNGGLGQLSSLFIRGTNSSHVLVLIDGVRLNQAGisGSADLSQIPISLVQRIEYIRGPRSAVYGS 140

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1153887946 221 DAMGGAVNIISPSASK-NYLDAGIsvGSFNTQ 251
Cdd:PRK10641  141 DAIGGVVNIITTRDKPgTTLSAGW--GSNGYQ 170
CarboxypepD_reg pfam13620
Carboxypeptidase regulatory-like domain;
29-101 5.43e-08

Carboxypeptidase regulatory-like domain;


Pssm-ID: 433354 [Multi-domain]  Cd Length: 81  Bit Score: 50.74  E-value: 5.43e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946  29 IQGVVQDHSKRGLSGVNIFVEN----TKIKTQTDQNGNFRITY-KKGEATLVFSLDGYKKFRKKVNF--SNETAAVTIQL 101
Cdd:pfam13620   2 ISGTVTDPSGAPVPGATVTVTNtdtgTVRTTTTDADGRYRFPGlPPGTYTVTVSAPGFKTATRTGVTvtAGQTTTLDVTL 81
PRK13513 PRK13513
ligand-gated channel protein;
161-300 2.98e-06

ligand-gated channel protein;


Pssm-ID: 184104 [Multi-domain]  Cd Length: 659  Bit Score: 50.92  E-value: 2.98e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 161 GVGSDYNFSINGMSGKAVKFFIDGVPLEML-------GKGVDLSTLP-VNMADRVEIYKGVVPVHLSTDAMGGAVNIISP 232
Cdd:PRK13513   86 GGGSTSDISIRGMAAKYTLILVDGKRVDTRstrpnsdGSGIEQGWLPpLAAIERIEVVRGPMSSLYGSDAMGGVINIITR 165

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1153887946 233 SASKNY-----LDAGI--SVGSFNTQRINL--NGQIKDDKTGiiLRINSFYNHSDNNytmkdmKIWNaGKNEYELRN 300
Cdd:PRK13513  166 KVQKEWhgslrADATLqeDSKSGDIFQTNAyaSGPLIDGLLG--LKVSGLLSHRSED------KIID-GYNEQRMRN 233
PRK13483 PRK13483
ligand-gated channel protein;
95-779 1.13e-05

ligand-gated channel protein;


Pssm-ID: 184080 [Multi-domain]  Cd Length: 660  Bit Score: 49.00  E-value: 1.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946  95 AAVTIQLADDQSVV--EEVTVHGKGKVKALQDGAFTVNAIDIAKLANTT-ADLNQVLNRTTGIKVrQQGGVGSDynFSIN 171
Cdd:PRK13483   18 VFVTHALAQAAPDKtmETVVVTASGYEQQIRDAPASISVITREDLENRFyRDLTDALLDVPGVVV-TGGGDRTD--ISLR 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 172 GMSGKAVKFFIDG-------VPLEMLGKGVDLS-TLPVNMADRVEIYKGVVPVHLSTDAMGGAVNIISPSASKNY----- 238
Cdd:PRK13483   95 GMGSQYTLILVDGkrqssreTRPNSDGPGVEQAwTPPLAAIERIEVIRGPMSSLYGSDAIGGVINIITRKVPNEWqgevr 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 239 LDAGI--SVGSFNTQRIN--LNGQIKDDKTGIilrinSFYnhsdNNYTMKDMKIWNAGKNEYELRNVK-RF----NDRYQ 309
Cdd:PRK13483  175 LDTTLqeNSDSGNVYQANffVNGPLIKDLLGL-----QLY----GQYTQREEDDIEGGYRDKDARSLTaKLaltpNEDHD 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 310 SVFgmaEAGVENKKWADYffVGMSQSVFDKQVQTGsnqevvyggvkQNGQAHNYFMKYKKANLfndRLDLNVYAGFSKS- 388
Cdd:PRK13483  246 IML---EVGTSNQERDST--VGKTVAPLAPGESCG-----------RRGCPESSTTEYERSTV---SLSHTGRWDFGTSd 306

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 389 ---VQKATDTLMRKYSWDGT-FEPSASSEKGGKSIMmqyedrvysQLGATYrlaNHHKLifnyvldyiKNTTFNSLDEKk 464
Cdd:PRK13483  307 tyiQHEEFDNKSREMKIKNTdFQSSLVAPLGQEHTL---------TFGAAY---NHQDL---------TDETSNQISDL- 364

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 465 edvppakmtkqifsiayqQDLFNKHWTnVFFGKYYRVgLQKMVFDQATRTDNpvKDNFSS---------WGYGFATTVki 535
Cdd:PRK13483  365 ------------------TDISRTQWA-VFSEDEWRI-ADDFALTGGLRLDH--DENFGGhvsprvygvWNLAPSWTV-- 420

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 536 vkglgaKGSFERSYRLVEPQEIFGD------GVAVTSNMNLKPETSNNVNVGLYYNhhWGAhAFRVEGAGYIRDTKDFIY 609
Cdd:PRK13483  421 ------KGGVSTGFRAPSLRQTTPDwgqvsrGGNIYGNPDLKPETSLNKELGLYYD--LGS-GLTASLTVFYNEFKDKIT 491

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 610 TV----------PNLYNS--TFkYENLSNIFTRGLEGELSYQYKRLLNVLMNISYNKAydntkfannneEVISATYKKDV 677
Cdd:PRK13483  492 RVacpatqctdgPNQFGAdpTT-YVNIDEAVTQGVEASLSYPITSTLSLSGNYTYTDS-----------EQKSGAYKGSP 559

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 678 PNQ-PWLFGNVNVSLCKDDWLQKDSRVElYYGLQMtewfyknwQSYGNPRNIPVI-PRQTLHNIGISY------SMKNGR 749
Cdd:PRK13483  560 LNQlPKHLFQASLNWEPTDRLNSWARVN-YRGEES--------QPTTGPSSSSFIaPSYTFLDLGANYqltdnlKLSAGI 630

                         730       740       750
                  ....*....|....*....|....*....|
gi 1153887946 750 YNLaFDvtnlgDALAYDNFKLQKQGRAFYL 779
Cdd:PRK13483  631 YNL-FD-----KEINYEEYGYVEDGRRYWL 654
PRK13484 PRK13484
IreA family TonB-dependent siderophore receptor;
108-783 2.91e-05

IreA family TonB-dependent siderophore receptor;


Pssm-ID: 139605 [Multi-domain]  Cd Length: 682  Bit Score: 47.69  E-value: 2.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 108 VEEVTVHGKGKVKALQDGAFTVNAIDIAKLANT-TADLNQVLNRTTGIKVRqqgGVGSDYNFSINGMSGKAVKFFIDGvp 186
Cdd:PRK13484   30 EDTLVVTASGFTQQLRNAPASVSVITSEQLQKKpVSDLVDAVKDVEGISIT---GGNEKPDISIRGLSGDYTLILVDG-- 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 187 LEMLGK--------GVDLSTLP-VNMADRVEIYKGVVPVHLSTDAMGGAVNIISPSASKNYLDAGISVGSF--------- 248
Cdd:PRK13484  105 RRQSGResrpngsgGFEAGFIPpVEAIERIEVIRGPMSSLYGSDAIGGVINIITKPVNNQTWDGVLGLGGIiqehgkfgn 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 249 -NTQRINLNGQIKDDKTGIILRINSFYNHSDN-----------NYTMK--------DMKIWNAGKN-------------E 295
Cdd:PRK13484  185 sTTNDFYLSGPLIKDKLGLQLYGGMNYRKEDSisqgtpakdnkNITATlqftptesQKFVFEYGKNnqvhtltpgesldA 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 296 YELR-NVKRFNDryqsvfgMAEAGVENKKWA----DYFFVGMSQ-SVFDKQVQtgsnQEVVYGGV-KQNGQAHNYfmKYK 368
Cdd:PRK13484  265 WTMRgNLKQPNS-------KRETHNSRSHWVaawnAQGEILHPEiAVYQEKVI----REVKSGKKdKYNHWDLNY--ESR 331

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 369 KANLFNDRLDLNVYAGFSKSVQkatdTLMRKYSWDGTFEPSASSEK---------GGKSIMMQYEDRVYSQLGAT--YRL 437
Cdd:PRK13484  332 KPEITNTIIDAKVTAFLPENVL----TIGGQFQHAELRDDSATGKKttetqsvsiKQKAVFIENEYAATDSLALTggLRL 407

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 438 ANHhklifnyvldyiknttfnsldekkedvppakmtkqifsiayqqDLFNKHWTNVFFGKYYrvglqkmvfdqatrtdnp 517
Cdd:PRK13484  408 DNH-------------------------------------------EIYGSYWNPRLYAVYN------------------ 426

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 518 VKDNFSswgygfattvkiVKGLGAKGSFERSYRLVEPQeiFG----DGVAVT-SNMNLKPETSNNVNVGLYYNHHWGAHA 592
Cdd:PRK13484  427 LTDNLT------------LKGGIAKAFRAPSIREVSPG--FGtltqGGASIMyGNRDLKPETSVTEEIGIIYSNDSGFSA 492

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 593 --------FRVEGAGYIRDTKDFIYTVpnlynSTFKYENLSNIFTRGLegELSYQYKRLLNvlMNISYNKAYDNTKFANN 664
Cdd:PRK13484  493 satlfntdFKNKLTSYDIGTKDPVTGL-----NTFIYDNVGEANIRGV--ELATQIPVYDK--WHVSANYTFTDSRRKSD 563

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 665 NEEVISATYKkdvpNQPWLFGNVNVSLCKDDWlQKDSRVELYYGLQmtewfYKNWQSYGNPRNIPVIPRQ----TLHNIG 740
Cdd:PRK13484  564 DESLNGKSLK----GEPLERTPRHAANAKLEW-DYTQDITFYSSLN-----YTGKQIWAAQRNGAKVPRVrngfTSMDIG 633

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|
gi 1153887946 741 ISYS-MKNGRYNLAfdVTNLGDALAYD------NFKLQkQGRAFYLKFRY 783
Cdd:PRK13484  634 LNYQiLPDTLINFA--VLNVTDRKSEDidtidgNWQVD-EGRRYWANVRV 680
PRK13486 PRK13486
TonB-dependent receptor;
111-249 4.97e-05

TonB-dependent receptor;


Pssm-ID: 139606 [Multi-domain]  Cd Length: 696  Bit Score: 46.94  E-value: 4.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 111 VTVHGKGKVKALQDGAFTVNAIDIAKL-ANTTADLNQVLNRTTGIKVRQQGGVGSDYNFSINGMSGKAVKFFIDGVpleM 189
Cdd:PRK13486   28 MIVSASGYEKKLTNAAASVSVISQEELqSSQYHDLAEALRSVEGVDVESGTGKTGGLEISIRGMPASYTLILIDGV---R 104

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1153887946 190 LGKGVDLS-----------TLPVNMADRVEIYKGVVPVHLSTDAMGGAVNIISPSASKNY---LDAGISVGSFN 249
Cdd:PRK13486  105 QGGSSDVTpngfsamntgfMPPLAAIERIEVIRGPMSTLYGSDAMGGVVNIITRKNADKWlssVNAGLNLQESN 178
OMP_b-brl_3 pfam14905
Outer membrane protein beta-barrel family; This family includes proteins annotated as TonB ...
 567-783 5.05e-04

Outer membrane protein beta-barrel family; This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.


Pssm-ID: 434300 [Multi-domain]  Cd Length: 407  Bit Score: 43.42  E-value: 5.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 567 NMNLKPETSNNVNVGLYYNHHWGAHAFrvegAGYIRDTKDFIY-TVPNLYNSTFKYENLSNIFTRGLEGELSYQYKRLLN 645
Cdd:pfam14905 209 NPNLKPEYTNSFELGYTYKWKLSLSLS----YRYTNDVIQQTFiTDDNDNVTYTTYENLGKSNSYGLELSASFNPTKWWS 284

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 646 vlMNISYNKAYDNTKFANNNEEVISAtykkdvpNQPWLFGNVNVSlckddwLQKDSRVELYYglqmtewfykNWQSYGNP 725
Cdd:pfam14905 285 --LNGNLNGYYNKYKIDGSLNSDFSN-------FGFNWNLNNTFT------LPKGWSLQLNG----------NYRSPRVT 339

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1153887946 726 RNIPVIPRQTLhNIGISYSMKNGRYNLAFDVTNL-----------GDALAYDNFKLQKQGRAFYLKFRY 783
Cdd:pfam14905 340 GQGKIKPFYSL-DLGLSKSFLKKKLTLSLNVNDIfntrkfrsttnYDNGFIQSYNNKWDSRSVRLSLSY 407
PRK10064 PRK10064
catecholate siderophore receptor CirA; Provisional
 95-238 6.37e-04

catecholate siderophore receptor CirA; Provisional


Pssm-ID: 236646 [Multi-domain]  Cd Length: 663  Bit Score: 43.33  E-value: 6.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946  95 AAVTIQLADDQSVVEEVTVHGKGKVKALQDGAFTVNAIDIAKL-ANTTADLNQVLNRTTGIKVRQQGGvgSDYNFSINGM 173
Cdd:PRK10064   17 ISCAWPVLAVDDDGETMVVTASAVEQNLKDAPASISVITQEDLqRKPVQNLKDVLKEVPGVQLTNEGD--NRKGVSIRGL 94

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 174 SGKAVKFFIDGVPLE-----MLGKGVDLSTLPVNMADRVEIYKGVVPVHLSTDAMGGAVNIISPSASKNY 238
Cdd:PRK10064   95 DSSYTLILIDGKRVNsrnavFRHNDFDLNWIPVDAIERIEVVRGPMSSLYGSDALGGVVNIITKKIGQKW 164
PRK13528 PRK13528
outer membrane receptor FepA; Provisional
 91-278 3.03e-03

outer membrane receptor FepA; Provisional


Pssm-ID: 237413 [Multi-domain]  Cd Length: 727  Bit Score: 40.90  E-value: 3.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946  91 SNETAAVTIQLADDQSVVEEVTVHGKGKVKAlQDGAFTVNAIDIAKlANTTADLNQVLNRTTGIKV---RQQGGVGSDYN 167
Cdd:PRK13528   19 LNSPVSAAESSDDDNGETMVVEATAEQELKQ-QPGVSIITAEDIKK-RPPVNDLSDIIRKMPGVNLtgnSASGTRGNNRQ 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153887946 168 FSINGMSGKAVKFFIDGVPL------------EMLGKGvDLSTLPVNMADRVEIYKGVVPVHLSTDAMGGAVNIIS---- 231
Cdd:PRK13528   97 IDIRGMGPENTLILIDGVPVtsrnsvryswrgERDTRG-DTNWVPPEMVERIEVIRGPAAARYGSGAAGGVVNIITkrpt 175

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1153887946 232 --PSASKN-YLDAGISVGSFNTQRIN--LNGQIKDDktGIILRINSFYNHSD 278
Cdd:PRK13528  176 ndWHGSLSlYTNQPESSKEGATRRANfsLSGPLAGD--ALTMRLYGNLNKTD 225
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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