NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1160660643|ref|WP_079521891|]
View 

polysaccharide biosynthesis tyrosine autokinase [Luteibacter sp. 22Crub2.1]

Protein Classification

P-loop NTPase family protein( domain architecture ID 1562424)

P-loop NTPase (nucleoside triphosphate hydrolase) family protein contains two conserved sequence signatures, the Walker A motif (the P-loop proper) and Walker B motif which bind, respectively, the beta and gamma phosphate moieties of the bound nucleotide (typically ATP or GTP), and a Mg(2+) cation

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
P-loop_NTPase super family cl38936
P-loop containing Nucleoside Triphosphate Hydrolases; Members of the P-loop NTPase domain ...
 1-724 0e+00

P-loop containing Nucleoside Triphosphate Hydrolases; Members of the P-loop NTPase domain superfamily are characterized by a conserved nucleotide phosphate-binding motif, also referred to as the Walker A motif (GxxxxGK[S/T], where x is any residue), and the Walker B motif (hhhh[D/E], where h is a hydrophobic residue). The Walker A and B motifs bind the beta-gamma phosphate moiety of the bound nucleotide (typically ATP or GTP) and the Mg2+ cation, respectively. The P-loop NTPases are involved in diverse cellular functions, and they can be divided into two major structural classes: the KG (kinase-GTPase) class which includes Ras-like GTPases and its circularly permutated YlqF-like; and the ASCE (additional strand catalytic E) class which includes ATPase Binding Cassette (ABC), DExD/H-like helicases, 4Fe-4S iron sulfur cluster binding proteins of NifH family, RecA-like F1-ATPases, and ATPases Associated with a wide variety of Activities (AAA). Also included are a diverse set of nucleotide/nucleoside kinase families.


The actual alignment was detected with superfamily member PRK11519:

Pssm-ID: 476819 [Multi-domain]  Cd Length: 719  Bit Score: 740.43  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643   1 MTTKIEQ----AHDDDTIDLNALFGTLLDHKWLIVAITGGFFVIGVLYTLLATPIYQATAVVQVEQKT-PSLpgLSDLSQ 75
Cdd:PRK11519    1 MTEKVKQhaapVTGSDEIDIGRLVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADALVQIEQNSgNSL--VQDIGS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643  76 SLGTTASQAVTEIALITSRLVVGQTVDDMRLNVQALPQRMPVIGDYLSR--GHKPGqlgkprfglsrygwggeVVDIFKL 153
Cdd:PRK11519   79 ALANKPPASDAEIQLIRSRLVLGKTVDDLDLDIAVSKNTFPIFGAGWDRlmGRQNE-----------------TVKVTTF 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 154 DLPDPTMGGKFELRAEDNHQFSLYDDDGKRvAQGAVGQLINGKGVTVQIRQLVANPGTRFDVVVQPALTTTTKLQTDVVA 233
Cdd:PRK11519  142 NRPKEMADQVFTLNVLDDKNYQLSSDGGFS-ARGQVGQMLKKDGVTLMVEAIHARPGTEFTVTKYSTLGMINNLQNNLTV 220

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 234 LEQGNDSGIIGLTYNNADPELARKVLEHVTTAYVRQNVERNSAEAASQLQFVKDQLPKVRQDLDKAQAAMNAFQTQSHSV 313
Cdd:PRK11519  221 TENGKDTGVLSLTYTGEDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSV 300

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 314 DLSMQTKGLLDQIVGVENNIQQLHMQEADIDRRFTHDHPAYKALQQQMGQLQAQKDKMQKEVGALPDTQQQLLKLNRDVQ 393
Cdd:PRK11519  301 DLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVE 380

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 394 VSSNTYTSLLNQAQQLDIARAGTVGNVRIVDKAAVDPNvPVQPRKALIVIIATFLGAFLALAFVFLKQILNRGIEDPALI 473
Cdd:PRK11519  381 SGQQVYMQLLNKQQELKITEASTVGDVRIVDPAITQPG-VLKPKKALIILGAIILGLMLSIVGVLLRSLFNRGIESPQVL 459

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 474 EDLGLPVYASVPLSSGQSAR----SIRTRHKHGArGPLLAISDPADLAIESIRSLRTSLHFARLEAKNNILMITGSSPFA 549
Cdd:PRK11519  460 EEHGISVYASIPLSEWQKARdsvkTIKGIKRYKQ-SQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSI 538

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 550 GKTFVSANLAAVIAQAGQRVLLVDGDMRRGTLHQLLGVKTGRGLSDLLVGKAELAEVVQKGPTENVDFISRGQVPPNPSE 629
Cdd:PRK11519  539 GKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSE 618

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 630 LLMHQHFTRFIEAVVPAYDLIIIDTPPILAVTDAAVIGHHVGTSLLVARFGLNKQRELALAKQRFEQNGVELKGAIFNAV 709
Cdd:PRK11519  619 LLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSI 698

                         730
                  ....*....|....*
gi 1160660643 710 EKRTAGYSEYAYYKY 724
Cdd:PRK11519  699 FRRASAYQDYGYYEY 713
 
Name Accession Description Interval E-value
PRK11519 PRK11519
tyrosine-protein kinase Wzc;
1-724 0e+00

tyrosine-protein kinase Wzc;


Pssm-ID: 183173 [Multi-domain]  Cd Length: 719  Bit Score: 740.43  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643   1 MTTKIEQ----AHDDDTIDLNALFGTLLDHKWLIVAITGGFFVIGVLYTLLATPIYQATAVVQVEQKT-PSLpgLSDLSQ 75
Cdd:PRK11519    1 MTEKVKQhaapVTGSDEIDIGRLVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADALVQIEQNSgNSL--VQDIGS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643  76 SLGTTASQAVTEIALITSRLVVGQTVDDMRLNVQALPQRMPVIGDYLSR--GHKPGqlgkprfglsrygwggeVVDIFKL 153
Cdd:PRK11519   79 ALANKPPASDAEIQLIRSRLVLGKTVDDLDLDIAVSKNTFPIFGAGWDRlmGRQNE-----------------TVKVTTF 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 154 DLPDPTMGGKFELRAEDNHQFSLYDDDGKRvAQGAVGQLINGKGVTVQIRQLVANPGTRFDVVVQPALTTTTKLQTDVVA 233
Cdd:PRK11519  142 NRPKEMADQVFTLNVLDDKNYQLSSDGGFS-ARGQVGQMLKKDGVTLMVEAIHARPGTEFTVTKYSTLGMINNLQNNLTV 220

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 234 LEQGNDSGIIGLTYNNADPELARKVLEHVTTAYVRQNVERNSAEAASQLQFVKDQLPKVRQDLDKAQAAMNAFQTQSHSV 313
Cdd:PRK11519  221 TENGKDTGVLSLTYTGEDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSV 300

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 314 DLSMQTKGLLDQIVGVENNIQQLHMQEADIDRRFTHDHPAYKALQQQMGQLQAQKDKMQKEVGALPDTQQQLLKLNRDVQ 393
Cdd:PRK11519  301 DLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVE 380

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 394 VSSNTYTSLLNQAQQLDIARAGTVGNVRIVDKAAVDPNvPVQPRKALIVIIATFLGAFLALAFVFLKQILNRGIEDPALI 473
Cdd:PRK11519  381 SGQQVYMQLLNKQQELKITEASTVGDVRIVDPAITQPG-VLKPKKALIILGAIILGLMLSIVGVLLRSLFNRGIESPQVL 459

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 474 EDLGLPVYASVPLSSGQSAR----SIRTRHKHGArGPLLAISDPADLAIESIRSLRTSLHFARLEAKNNILMITGSSPFA 549
Cdd:PRK11519  460 EEHGISVYASIPLSEWQKARdsvkTIKGIKRYKQ-SQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSI 538

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 550 GKTFVSANLAAVIAQAGQRVLLVDGDMRRGTLHQLLGVKTGRGLSDLLVGKAELAEVVQKGPTENVDFISRGQVPPNPSE 629
Cdd:PRK11519  539 GKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSE 618

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 630 LLMHQHFTRFIEAVVPAYDLIIIDTPPILAVTDAAVIGHHVGTSLLVARFGLNKQRELALAKQRFEQNGVELKGAIFNAV 709
Cdd:PRK11519  619 LLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSI 698

                         730
                  ....*....|....*
gi 1160660643 710 EKRTAGYSEYAYYKY 724
Cdd:PRK11519  699 FRRASAYQDYGYYEY 713
eps_transp_fam TIGR01005
exopolysaccharide transport protein family; The model describes the exopolysaccharide ...
 11-725 6.05e-112

exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273391 [Multi-domain]  Cd Length: 764  Bit Score: 356.34  E-value: 6.05e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643  11 DDTIDLNALFGTLLDHKWLIVAITGGFFVIGVLYTLLATPIYQATAVVQVEQKTPSLPGLSDLSQSLGTTASQAVTEIAL 90
Cdd:TIGR01005   1 DGEIDLDRLLAALFANARLIAAFAAAFIALGAAYAFFARPVYEADIMILLDDNLNKAAEEEGDPSNLFDLDTDAAAAIEI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643  91 ITSRLVVGQTVDDMRLNVQALPQRMP-----VIGDYLSRghKPGQLGKP-RFGLSRYGWGGEVVDIFKLDLPDPTMGGKF 164
Cdd:TIGR01005  81 LKSGELAGKAVDKLHLSENAKILNPPrfpvdLIGAWIKS--AAGLFSEPgGFDLGEEAAGNERIDKAAADIPEALAGEPF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 165 ELRAEDNHQFSLYDDDGKRVAQGAVGQLINGK----GVTVQIRQLVANPGTRFDVVVQPALTTTTKLQTDVVALEQGNDS 240
Cdd:TIGR01005 159 KLISLGAGAFRLEDKLLAAPIAGGVAEALEADqliaNFEAQENALTAKAEALFDLEQDSQAAALEMAHDKAEIAEKAAQG 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 241 GIIGL-TYNNADPELARKVLEHVTTAYVRQNVERNSAEAASQLQFVKDQLPKVRQDLDKAQAAMNAFQTQSHSVDLSMQT 319
Cdd:TIGR01005 239 EIIGEaQLADLNPALIAAIADQAAAEARADNIKRIADEAEENAVFLAGILPKEGDELEIADLKTNELRNGKGEFDLSDEF 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 320 KGLLDQIVGVENNIQQLHMQEADIDRRFTHDHP-AYKALQQQMGQLQAQKDKMQKEVGALPDTQQQLLKLNRDVQVSSNT 398
Cdd:TIGR01005 319 GADHPEAVCSAPSLQELKAKIAEELQQFTASHKgEQAIAQQIEESLRGKINGIAGKLKDAPEIEQDLRELEQDAAADKEL 398

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 399 YTSLLNQAQQLDIARAGTVGNVRIVDKAAVdPNVPVQPRKALIVIIATFLGAFLALAFVFLKQILNRGIEDPALIED-LG 477
Cdd:TIGR01005 399 YESLLGDMEQAKLQKAFKIAKARLIDEAAV-PEEPSKPKKLMTLALAAVLGMMLGGAAAAFLEALEGGFRDEGDIEEhLG 477

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 478 LPVYASVPLSSGQSARSIRTRHKHgaRGP---------------LLA---ISDPADLAIESIRSLRTSLHFARLEAKNNI 539
Cdd:TIGR01005 478 HRSLATVPLLDTQMDKKAQLTHAH--FGSvkrhdeavddtmpfqLLArivPDAPRSTFAEAFRNAKLACDFALADAENNL 555

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 540 LMITGSSPFAGKTFVSANLAAVIAQAGQRVLLVDGDMRRGTLHQLLGVKTGRGLSDLLVGKAELAEVVQKGPTENVDFIS 619
Cdd:TIGR01005 556 IAIAGALPDEGKSFIAANFAALIAAGGKRTLLIDADIRKGGLHQMFGKAPKPGLLDLLAGEASIEAGIHRDQRPGLAFIA 635

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 620 RGQV---PPNPSELLMHQHFTRFIEAVVPAYDLIIIDTPPILAVTDAAVIGHHVGTSLLVARFGLNKQRELALAKQRFEQ 696
Cdd:TIGR01005 636 AGGAshfPHNPNELLANPAMAELIDNARNAFDLVLVDLAALAAVADAAAFAALADGILFVTEFERSPLGEIRDLIHQEPH 715

                         730       740       750
                  ....*....|....*....|....*....|....*.
gi 1160660643 697 NGVELKGAIFNAVEKRT-------AGYSEYAYYKYK 725
Cdd:TIGR01005 716 ANSDVLGVIFNALDMNElgkygdfDGAEKYRHRQGG 751
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1-724 4.45e-81

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 272.28  E-value: 4.45e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643   1 MTTKIE-QAHDDDTIDLNALFGTLLDHKWLIVAITGGFFVIGVLYTLLATPIYQATAVVQVEQKTPSlPGLSDLSQSlGT 79
Cdd:COG3206     1 MNESSSaPPEEEDEIDLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVEPQSSD-VLLSGLSSL-SA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643  80 TASQAVTEIALITSRLVVGQTVDDMRLNVQALPQRMPVigdylsrghkpgqlgkprfglsrygwggevvdifkldlpdpt 159
Cdd:COG3206    79 SDSPLETQIEILKSRPVLERVVDKLNLDEDPLGEEASR------------------------------------------ 116

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 160 mggkfelraednhqfslydddgkrvaQGAVGQLINGkgvtvqirqlvanpgtrfdvvvqpalttttklqtdvVALEQGND 239
Cdd:COG3206   117 --------------------------EAAIERLRKN------------------------------------LTVEPVKG 134

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 240 SGIIGLTYNNADPELARKVLEHVTTAYVRQNVERNSAEAASQLQFVKDQLPKVRQDLDKAQAAMNAFQTQSHSVDLSMQT 319
Cdd:COG3206   135 SNVIEISYTSPDPELAAAVANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEA 214

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 320 KGLLDQIVGVEN--------------------------------------------NIQQLHMQEADIDRRFTHDHPAYK 355
Cdd:COG3206   215 KLLLQQLSELESqlaearaelaeaearlaalraqlgsgpdalpellqspviqqlraQLAELEAELAELSARYTPNHPDVI 294

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 356 -----------------------------ALQQQMGQLQAQKDKMQKEVGALPDTQQQLLKLNRDVQVSSNTYTSLLNQA 406
Cdd:COG3206   295 alraqiaalraqlqqeaqrilasleaeleALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRL 374

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 407 QQLDIARAGTVGNVRIVDKAAVdPNVPVQPRKALIVIIATFLGAFLALAFVFLKQILNRGIEDPALIEDLGLPvyasVPL 486
Cdd:COG3206   375 EEARLAEALTVGNVRVIDPAVV-PLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGL----PLL 449

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 487 SSGQSARSIRTRHKHGARGPLLAISDPADLAIESIRSLRTSLHFARLEAKNNILMITGSSPFAGKTFVSANLAAVIAQAG 566
Cdd:COG3206   450 GPLPPLKSKRERRRARLALLLLAAALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAAAAAALLLL 529

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 567 QRVLLVDGDMRRGTLHQLLGVKTGRGLSDLLVGKAELAEVVQKGPTENVDFISRGQVPPNPSELLMHQHFTRFIEAVVPA 646
Cdd:COG3206   530 LLLLLLLDLLLLLLLLLLLLLLLLGGLLLLLLLLLLLLLLLLLLLLLLLLLLPPPLLLPLLLLLLLLLLLLLLLLLLLLS 609

                         730       740       750       760       770       780       790
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1160660643 647 YDLIIIDTPPILAVTDAAVIGHHVGTSLLVARFGLNKQRELALAKQRFEQNGVELKGAIFNAVEKRTAGYSEYAYYKY 724
Cdd:COG3206   610 DDLILDLVPLLAALLAAAVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGVVLGGVVYGYYYYYYYYYYYY 687
BY-kinase cd05387
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ...
 519-707 8.88e-70

bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.


Pssm-ID: 349772 [Multi-domain]  Cd Length: 190  Bit Score: 226.30  E-value: 8.88e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 519 ESIRSLRTSLHFARLEAKNNILMITGSSPFAGKTFVSANLAAVIAQAGQRVLLVDGDMRRGTLHQLLGVKTGRGLSDLLV 598
Cdd:cd05387     1 EAFRTLRTNLLFAGSDAGPKVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 599 GKAELAEVVQKGPTENVDFISRGQVPPNPSELLMHQHFTRFIEAVVPAYDLIIIDTPPILAVTDAAVIGHHVGTSLLVAR 678
Cdd:cd05387    81 GQASLEDVIQSTNIPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLLVVR 160

                         170       180
                  ....*....|....*....|....*....
gi 1160660643 679 FGLNKQRELALAKQRFEQNGVELKGAIFN 707
Cdd:cd05387   161 AGKTRRREVKEALERLEQAGAKVLGVVLN 189
GNVR pfam13807
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, ...
 380-461 5.58e-29

G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, pfam02706 and CbiA pfam01656. There is a highly conserved GNVR sequence motif which characterizes this domain. The function is not known.


Pssm-ID: 433492 [Multi-domain]  Cd Length: 82  Bit Score: 110.38  E-value: 5.58e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 380 DTQQQLLKLNRDVQVSSNTYTSLLNQAQQLDIARAGTVGNVRIVDKAAVDPNvPVQPRKALIVIIATFLGAFLALAFVFL 459
Cdd:pfam13807   1 DTQQEILRLTRDVEVNTEIYTQLLNSNQELEVVKAGTVGNVRIVDTAVVPPK-PVKPKKALIVVLALLLGLMLGVGLVLL 79


                  ..
gi 1160660643 460 KQ 461
Cdd:pfam13807  80 RR 81
 
Name Accession Description Interval E-value
PRK11519 PRK11519
tyrosine-protein kinase Wzc;
1-724 0e+00

tyrosine-protein kinase Wzc;


Pssm-ID: 183173 [Multi-domain]  Cd Length: 719  Bit Score: 740.43  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643   1 MTTKIEQ----AHDDDTIDLNALFGTLLDHKWLIVAITGGFFVIGVLYTLLATPIYQATAVVQVEQKT-PSLpgLSDLSQ 75
Cdd:PRK11519    1 MTEKVKQhaapVTGSDEIDIGRLVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADALVQIEQNSgNSL--VQDIGS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643  76 SLGTTASQAVTEIALITSRLVVGQTVDDMRLNVQALPQRMPVIGDYLSR--GHKPGqlgkprfglsrygwggeVVDIFKL 153
Cdd:PRK11519   79 ALANKPPASDAEIQLIRSRLVLGKTVDDLDLDIAVSKNTFPIFGAGWDRlmGRQNE-----------------TVKVTTF 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 154 DLPDPTMGGKFELRAEDNHQFSLYDDDGKRvAQGAVGQLINGKGVTVQIRQLVANPGTRFDVVVQPALTTTTKLQTDVVA 233
Cdd:PRK11519  142 NRPKEMADQVFTLNVLDDKNYQLSSDGGFS-ARGQVGQMLKKDGVTLMVEAIHARPGTEFTVTKYSTLGMINNLQNNLTV 220

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 234 LEQGNDSGIIGLTYNNADPELARKVLEHVTTAYVRQNVERNSAEAASQLQFVKDQLPKVRQDLDKAQAAMNAFQTQSHSV 313
Cdd:PRK11519  221 TENGKDTGVLSLTYTGEDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSV 300

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 314 DLSMQTKGLLDQIVGVENNIQQLHMQEADIDRRFTHDHPAYKALQQQMGQLQAQKDKMQKEVGALPDTQQQLLKLNRDVQ 393
Cdd:PRK11519  301 DLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVE 380

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 394 VSSNTYTSLLNQAQQLDIARAGTVGNVRIVDKAAVDPNvPVQPRKALIVIIATFLGAFLALAFVFLKQILNRGIEDPALI 473
Cdd:PRK11519  381 SGQQVYMQLLNKQQELKITEASTVGDVRIVDPAITQPG-VLKPKKALIILGAIILGLMLSIVGVLLRSLFNRGIESPQVL 459

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 474 EDLGLPVYASVPLSSGQSAR----SIRTRHKHGArGPLLAISDPADLAIESIRSLRTSLHFARLEAKNNILMITGSSPFA 549
Cdd:PRK11519  460 EEHGISVYASIPLSEWQKARdsvkTIKGIKRYKQ-SQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSI 538

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 550 GKTFVSANLAAVIAQAGQRVLLVDGDMRRGTLHQLLGVKTGRGLSDLLVGKAELAEVVQKGPTENVDFISRGQVPPNPSE 629
Cdd:PRK11519  539 GKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSE 618

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 630 LLMHQHFTRFIEAVVPAYDLIIIDTPPILAVTDAAVIGHHVGTSLLVARFGLNKQRELALAKQRFEQNGVELKGAIFNAV 709
Cdd:PRK11519  619 LLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSI 698

                         730
                  ....*....|....*
gi 1160660643 710 EKRTAGYSEYAYYKY 724
Cdd:PRK11519  699 FRRASAYQDYGYYEY 713
PRK09841 PRK09841
tyrosine-protein kinase;
8-721 0e+00

tyrosine-protein kinase;


Pssm-ID: 182106 [Multi-domain]  Cd Length: 726  Bit Score: 584.56  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643   8 AHDDDTIDLNALFGTLLDHKWLIVAITGGFFVIGVLYTLLATPIYQATAVVQVEQKTPS--LPGLSDLSQSLgttASQAV 85
Cdd:PRK09841   12 STQENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADTLVQVEQKQGNaiLSGLSDMIPNS---SPESA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643  86 TEIALITSRLVVGQTVDDMRLNVQALPQRMPVIGDYLSR--GHKPGQLGkprfglsrYGWggevvdifkldLPDPTMGGK 163
Cdd:PRK09841   89 PEIQLLQSRMILGKTIAELNLRDIVEQKYFPIVGRGWARltKEKPGELA--------ISW-----------MHIPQLNGQ 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 164 ---FELRAEDNHQFSLYDDDGKrvAQGAVGQLINGKGVTVQIRQLVANPGTRFDVVVQPALTTTTKLQTDVVALEQGNDS 240
Cdd:PRK09841  150 dqqLTLTVGENGHYTLEGEEFT--VNGMVGQRLEKDGVALTIADIKAKPGTQFVLSQRTELEAINALQETFTVSERSKES 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 241 GIIGLTYNNADPELARKVLEHVTTAYVRQNVERNSAEAASQLQFVKDQLPKVRQDLDKAQAAMNAFQTQSHSVDLSMQTK 320
Cdd:PRK09841  228 GMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAK 307

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 321 GLLDQIVGVENNIQQLHMQEADIDRRFTHDHPAYKALQQQMGQLQAQKDKMQKEVGALPDTQQQLLKLNRDVQVSSNTYT 400
Cdd:PRK09841  308 AVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYL 387

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 401 SLLNQAQQLDIARAGTVGNVRIVDKAAVDPNvPVQPRKALIVIIATFLGAFLALAFVFLKQILNRGIEDPALIEDLGLPV 480
Cdd:PRK09841  388 QLLNRQQELSISKSSAIGNVRIIDPAVTQPQ-PVKPKKALNVVLGFILGLFISVGAVLARAMLRRGVEAPEQLEEHGISV 466

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 481 YASVPLSSG-------QSARSIRTRHKHGARG-PLLAISDPADLAIESIRSLRTSLHFARLEAKNNILMITGSSPFAGKT 552
Cdd:PRK09841  467 YATIPMSEWldkrtrlRKKNLFSNQQRHRTKNiPFLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKT 546

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 553 FVSANLAAVIAQAGQRVLLVDGDMRRGTLHQLLGVKTGRGLSDLLVGKAELAEVVQKGPTENVDFISRGQVPPNPSELLM 632
Cdd:PRK09841  547 FVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLM 626

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 633 HQHFTRFIEAVVPAYDLIIIDTPPILAVTDAAVIGHHVGTSLLVARFGLNKQRELALAKQRFEQNGVELKGAIFNAVEKR 712
Cdd:PRK09841  627 RDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 706

                         730
                  ....*....|....
gi 1160660643 713 -----TAGYSEYAY 721
Cdd:PRK09841  707 astaySYGYNYYGY 720
eps_transp_fam TIGR01005
exopolysaccharide transport protein family; The model describes the exopolysaccharide ...
 11-725 6.05e-112

exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273391 [Multi-domain]  Cd Length: 764  Bit Score: 356.34  E-value: 6.05e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643  11 DDTIDLNALFGTLLDHKWLIVAITGGFFVIGVLYTLLATPIYQATAVVQVEQKTPSLPGLSDLSQSLGTTASQAVTEIAL 90
Cdd:TIGR01005   1 DGEIDLDRLLAALFANARLIAAFAAAFIALGAAYAFFARPVYEADIMILLDDNLNKAAEEEGDPSNLFDLDTDAAAAIEI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643  91 ITSRLVVGQTVDDMRLNVQALPQRMP-----VIGDYLSRghKPGQLGKP-RFGLSRYGWGGEVVDIFKLDLPDPTMGGKF 164
Cdd:TIGR01005  81 LKSGELAGKAVDKLHLSENAKILNPPrfpvdLIGAWIKS--AAGLFSEPgGFDLGEEAAGNERIDKAAADIPEALAGEPF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 165 ELRAEDNHQFSLYDDDGKRVAQGAVGQLINGK----GVTVQIRQLVANPGTRFDVVVQPALTTTTKLQTDVVALEQGNDS 240
Cdd:TIGR01005 159 KLISLGAGAFRLEDKLLAAPIAGGVAEALEADqliaNFEAQENALTAKAEALFDLEQDSQAAALEMAHDKAEIAEKAAQG 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 241 GIIGL-TYNNADPELARKVLEHVTTAYVRQNVERNSAEAASQLQFVKDQLPKVRQDLDKAQAAMNAFQTQSHSVDLSMQT 319
Cdd:TIGR01005 239 EIIGEaQLADLNPALIAAIADQAAAEARADNIKRIADEAEENAVFLAGILPKEGDELEIADLKTNELRNGKGEFDLSDEF 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 320 KGLLDQIVGVENNIQQLHMQEADIDRRFTHDHP-AYKALQQQMGQLQAQKDKMQKEVGALPDTQQQLLKLNRDVQVSSNT 398
Cdd:TIGR01005 319 GADHPEAVCSAPSLQELKAKIAEELQQFTASHKgEQAIAQQIEESLRGKINGIAGKLKDAPEIEQDLRELEQDAAADKEL 398

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 399 YTSLLNQAQQLDIARAGTVGNVRIVDKAAVdPNVPVQPRKALIVIIATFLGAFLALAFVFLKQILNRGIEDPALIED-LG 477
Cdd:TIGR01005 399 YESLLGDMEQAKLQKAFKIAKARLIDEAAV-PEEPSKPKKLMTLALAAVLGMMLGGAAAAFLEALEGGFRDEGDIEEhLG 477

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 478 LPVYASVPLSSGQSARSIRTRHKHgaRGP---------------LLA---ISDPADLAIESIRSLRTSLHFARLEAKNNI 539
Cdd:TIGR01005 478 HRSLATVPLLDTQMDKKAQLTHAH--FGSvkrhdeavddtmpfqLLArivPDAPRSTFAEAFRNAKLACDFALADAENNL 555

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 540 LMITGSSPFAGKTFVSANLAAVIAQAGQRVLLVDGDMRRGTLHQLLGVKTGRGLSDLLVGKAELAEVVQKGPTENVDFIS 619
Cdd:TIGR01005 556 IAIAGALPDEGKSFIAANFAALIAAGGKRTLLIDADIRKGGLHQMFGKAPKPGLLDLLAGEASIEAGIHRDQRPGLAFIA 635

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 620 RGQV---PPNPSELLMHQHFTRFIEAVVPAYDLIIIDTPPILAVTDAAVIGHHVGTSLLVARFGLNKQRELALAKQRFEQ 696
Cdd:TIGR01005 636 AGGAshfPHNPNELLANPAMAELIDNARNAFDLVLVDLAALAAVADAAAFAALADGILFVTEFERSPLGEIRDLIHQEPH 715

                         730       740       750
                  ....*....|....*....|....*....|....*.
gi 1160660643 697 NGVELKGAIFNAVEKRT-------AGYSEYAYYKYK 725
Cdd:TIGR01005 716 ANSDVLGVIFNALDMNElgkygdfDGAEKYRHRQGG 751
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1-724 4.45e-81

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 272.28  E-value: 4.45e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643   1 MTTKIE-QAHDDDTIDLNALFGTLLDHKWLIVAITGGFFVIGVLYTLLATPIYQATAVVQVEQKTPSlPGLSDLSQSlGT 79
Cdd:COG3206     1 MNESSSaPPEEEDEIDLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVEPQSSD-VLLSGLSSL-SA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643  80 TASQAVTEIALITSRLVVGQTVDDMRLNVQALPQRMPVigdylsrghkpgqlgkprfglsrygwggevvdifkldlpdpt 159
Cdd:COG3206    79 SDSPLETQIEILKSRPVLERVVDKLNLDEDPLGEEASR------------------------------------------ 116

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 160 mggkfelraednhqfslydddgkrvaQGAVGQLINGkgvtvqirqlvanpgtrfdvvvqpalttttklqtdvVALEQGND 239
Cdd:COG3206   117 --------------------------EAAIERLRKN------------------------------------LTVEPVKG 134

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 240 SGIIGLTYNNADPELARKVLEHVTTAYVRQNVERNSAEAASQLQFVKDQLPKVRQDLDKAQAAMNAFQTQSHSVDLSMQT 319
Cdd:COG3206   135 SNVIEISYTSPDPELAAAVANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEA 214

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 320 KGLLDQIVGVEN--------------------------------------------NIQQLHMQEADIDRRFTHDHPAYK 355
Cdd:COG3206   215 KLLLQQLSELESqlaearaelaeaearlaalraqlgsgpdalpellqspviqqlraQLAELEAELAELSARYTPNHPDVI 294

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 356 -----------------------------ALQQQMGQLQAQKDKMQKEVGALPDTQQQLLKLNRDVQVSSNTYTSLLNQA 406
Cdd:COG3206   295 alraqiaalraqlqqeaqrilasleaeleALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRL 374

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 407 QQLDIARAGTVGNVRIVDKAAVdPNVPVQPRKALIVIIATFLGAFLALAFVFLKQILNRGIEDPALIEDLGLPvyasVPL 486
Cdd:COG3206   375 EEARLAEALTVGNVRVIDPAVV-PLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGL----PLL 449

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 487 SSGQSARSIRTRHKHGARGPLLAISDPADLAIESIRSLRTSLHFARLEAKNNILMITGSSPFAGKTFVSANLAAVIAQAG 566
Cdd:COG3206   450 GPLPPLKSKRERRRARLALLLLAAALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAAAAAALLLL 529

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 567 QRVLLVDGDMRRGTLHQLLGVKTGRGLSDLLVGKAELAEVVQKGPTENVDFISRGQVPPNPSELLMHQHFTRFIEAVVPA 646
Cdd:COG3206   530 LLLLLLLDLLLLLLLLLLLLLLLLGGLLLLLLLLLLLLLLLLLLLLLLLLLLPPPLLLPLLLLLLLLLLLLLLLLLLLLS 609

                         730       740       750       760       770       780       790
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1160660643 647 YDLIIIDTPPILAVTDAAVIGHHVGTSLLVARFGLNKQRELALAKQRFEQNGVELKGAIFNAVEKRTAGYSEYAYYKY 724
Cdd:COG3206   610 DDLILDLVPLLAALLAAAVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGVVLGGVVYGYYYYYYYYYYYY 687
BY-kinase cd05387
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ...
 519-707 8.88e-70

bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.


Pssm-ID: 349772 [Multi-domain]  Cd Length: 190  Bit Score: 226.30  E-value: 8.88e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 519 ESIRSLRTSLHFARLEAKNNILMITGSSPFAGKTFVSANLAAVIAQAGQRVLLVDGDMRRGTLHQLLGVKTGRGLSDLLV 598
Cdd:cd05387     1 EAFRTLRTNLLFAGSDAGPKVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 599 GKAELAEVVQKGPTENVDFISRGQVPPNPSELLMHQHFTRFIEAVVPAYDLIIIDTPPILAVTDAAVIGHHVGTSLLVAR 678
Cdd:cd05387    81 GQASLEDVIQSTNIPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLLVVR 160

                         170       180
                  ....*....|....*....|....*....
gi 1160660643 679 FGLNKQRELALAKQRFEQNGVELKGAIFN 707
Cdd:cd05387   161 AGKTRRREVKEALERLEQAGAKVLGVVLN 189
Mrp COG0489
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ...
 503-724 6.96e-62

Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440255 [Multi-domain]  Cd Length: 289  Bit Score: 208.89  E-value: 6.96e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 503 ARGPLLAISDPADLAIESIRSLRTSLHFARLEAKNNILMITGSSPFAGKTFVSANLAAVIAQAGQRVLLVDGDMRRGTLH 582
Cdd:COG0489    58 ALLLLLLLLLGLLLLLLLALALLLLLLLLLLRLLLEVIAVTSGKGGEGKSTVAANLALALAQSGKRVLLIDADLRGPSLH 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 583 QLLGVKTGRGLSDLLVGKAELAEVVQKGPTENVDFISRGQVPPNPSELLMHQHFTRFIEAVVPAYDLIIIDTPPILAVTD 662
Cdd:COG0489   138 RMLGLENRPGLSDVLAGEASLEDVIQPTEVEGLDVLPAGPLPPNPSELLASKRLKQLLEELRGRYDYVIIDTPPGLGVAD 217

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1160660643 663 AAVIGHHVGTSLLVARFGLNKQRELALAKQRFEQNGVELKGAIFNAV----EKRTAGYSEYAYYKY 724
Cdd:COG0489   218 ATLLASLVDGVLLVVRPGKTALDDVRKALEMLEKAGVPVLGVVLNMVcpkgERYYGGGEEYGYREY 283
eps_fam TIGR01007
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ...
 519-722 3.70e-52

capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273392 [Multi-domain]  Cd Length: 204  Bit Score: 179.56  E-value: 3.70e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 519 ESIRSLRTSLHFARleAKNNILMITGSSPFAGKTFVSANLAAVIAQAGQRVLLVDGDMRRGTLHQLLGVKTGR-GLSDLL 597
Cdd:TIGR01007   1 EYYNAIRTNIQFSG--AEIKVLLITSVKPGEGKSTTSANIAIAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKItGLTNFL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 598 VGKAELAEVVQKGPTENVDFISRGQVPPNPSELLMHQHFTRFIEAVVPAYDLIIIDTPPILAVTDAAVIGHHVGTSLLVA 677
Cdd:TIGR01007  79 SGTTDLSDAICDTNIENLDVITAGPVPPNPTELLQSSNFKTLIETLRKRFDYIIIDTPPIGTVTDAAIIARACDASILVT 158

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1160660643 678 RFGLNKQRELALAKQRFEQNGVELKGAIFNAVEKRTAGYSEYAYY 722
Cdd:TIGR01007 159 DAGKIKKREVKKAKEQLEQAGSNFLGVVLNKVDISVSKYGYYGYY 203
EpsG TIGR03029
chain length determinant protein tyrosine kinase EpsG; The proteins in this family are ...
 507-707 2.91e-37

chain length determinant protein tyrosine kinase EpsG; The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).


Pssm-ID: 132074 [Multi-domain]  Cd Length: 274  Bit Score: 140.77  E-value: 2.91e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 507 LLAISDPADLAIESIRSLRTSLHFARLEAKNNILMITGSSPFAGKTFVSANLAAVIAQAGQRVLLVDGDMRRGTLHQLLG 586
Cdd:TIGR03029  73 LIAAYQPFSPQVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFK 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 587 VKTGRGLSDLLVGKAELAEVVQKGPTENVDFISRGQVPPNPSELLMHQHFTRFIEAVVPAYDLIIIDTPPILAVTDAAVI 666
Cdd:TIGR03029 153 LSEQRGLSDILAGRSDLEVITHIPALENLSVLPAGAIPPNPQELLARPAFTDLLNKVMGDYDVVIVDTPSAEHSSDAQIV 232

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1160660643 667 GHHVGTSLLVARFGLNKQRELALAKQRFEQNGVELKGAIFN 707
Cdd:TIGR03029 233 ATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLN 273
GNVR pfam13807
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, ...
 380-461 5.58e-29

G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, pfam02706 and CbiA pfam01656. There is a highly conserved GNVR sequence motif which characterizes this domain. The function is not known.


Pssm-ID: 433492 [Multi-domain]  Cd Length: 82  Bit Score: 110.38  E-value: 5.58e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 380 DTQQQLLKLNRDVQVSSNTYTSLLNQAQQLDIARAGTVGNVRIVDKAAVDPNvPVQPRKALIVIIATFLGAFLALAFVFL 459
Cdd:pfam13807   1 DTQQEILRLTRDVEVNTEIYTQLLNSNQELEVVKAGTVGNVRIVDTAVVPPK-PVKPKKALIVVLALLLGLMLGVGLVLL 79


                  ..
gi 1160660643 460 KQ 461
Cdd:pfam13807  80 RR 81
FlhG COG0455
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell ...
 553-656 1.24e-20

MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440223 [Multi-domain]  Cd Length: 230  Bit Score: 91.49  E-value: 1.24e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 553 FVSANLAAVIAQAGQRVLLVDGDMRRGTLHQLLGVKTGRGLSDLLVGKAELAEVVQKGPtENVDFISRGQVPPNPSELLM 632
Cdd:COG0455     1 TVAVNLAAALARLGKRVLLVDADLGLANLDVLLGLEPKATLADVLAGEADLEDAIVQGP-GGLDVLPGGSGPAELAELDP 79

                          90       100
                  ....*....|....*....|....
gi 1160660643 633 HQHFTRFIEAVVPAYDLIIIDTPP 656
Cdd:COG0455    80 EERLIRVLEELERFYDVVLVDTGA 103
FlhG-like cd02038
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ...
 550-656 2.59e-17

MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.


Pssm-ID: 349758 [Multi-domain]  Cd Length: 230  Bit Score: 81.85  E-value: 2.59e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 550 GKTFVSANLAAVIAQAGQRVLLVDGDMRRGTLHQLLGVKTGRGLSDLLVGKAELAEVVQKGPtENVDFISRGQvppNPSE 629
Cdd:cd02038    13 GKTNVSANLALALSKLGKRVLLLDADLGLANLDILLGLAPKKTLGDVLKGRVSLEDIIVEGP-EGLDIIPGGS---GMEE 88

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1160660643 630 L--LMHQHFTRFIEAV---VPAYDLIIIDTPP 656
Cdd:cd02038    89 LanLDPEQKAKLIEELsslESNYDYLLIDTGA 120
ParA COG1192
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ...
 550-666 7.07e-17

ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440805 [Multi-domain]  Cd Length: 253  Bit Score: 81.06  E-value: 7.07e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 550 GKTFVSANLAAVIAQAGQRVLLVDGDMrRGTLHQLLGVK---TGRGLSDLLVGKAELAEVVQKGPTENVDFIsrgqvPPN 626
Cdd:COG1192    14 GKTTTAVNLAAALARRGKRVLLIDLDP-QGNLTSGLGLDpddLDPTLYDLLLDDAPLEDAIVPTEIPGLDLI-----PAN 87

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1160660643 627 PS------ELL----MHQHFTRFIEAVVPAYDLIIIDTPPILAV-TDAAVI 666
Cdd:COG1192    88 IDlagaeiELVsrpgRELRLKRALAPLADDYDYILIDCPPSLGLlTLNALA 138
Wzz pfam02706
Chain length determinant protein; This family includes proteins involved in lipopolysaccharide ...
 12-103 8.86e-17

Chain length determinant protein; This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.


Pssm-ID: 460658 [Multi-domain]  Cd Length: 90  Bit Score: 75.79  E-value: 8.86e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643  12 DTIDLNALFGTLLDHKWLIVAITGGFFVIGVLYTLLATPIYQATAVVQVEQKtpSLPGLSDLSQSLGTTASQAVTEIALI 91
Cdd:pfam02706   1 DEIDLIELLGVLWKRKKLIILVTLLFTLLAAAYAFLATPKYTATAQILVPQK--KGEAGSLLGSDLQAGLQLASTEIEIL 78

                          90
                  ....*....|..
gi 1160660643  92 TSRLVVGQTVDD 103
Cdd:pfam02706  79 KSRDVLEKVIDE 90
YveK COG3944
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
416-593 1.73e-14

Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443144 [Multi-domain]  Cd Length: 309  Bit Score: 75.10  E-value: 1.73e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 416 TVGNVRIVDKAAVdPNVPVQPRKALIVIIATFLGAFLALAFVFLKQILNRGIEDPALIED-LGLPVyasvplssgqsars 494
Cdd:COG3944   146 KVDNVTVLDPATV-PASPVSPNPKLNLAIGLVLGLLLGVGLAFLRELLDTTIRSEEDIERlLGLLL-------------- 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 495 IRTRHKHGARGPLLAISDPADLAIESIRSLRTSLHFARLEAKNNILMITGSSPFAGKTFVSANLAAVIAQAGQRVLLVDG 574
Cdd:COG3944   211 GGAVPAARSARPLLLLLADASPRAAAARRRRRNLLFALAAVDARTVVVVSSSLSEGKSTTTAALALALAAAAAGVVLVLA 290

                         170
                  ....*....|....*....
gi 1160660643 575 DMRRGTLHQLLGVKTGRGL 593
Cdd:COG3944   291 DLDRRRRVALLGLLEGAGL 309
CpaE COG4963
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular ...
 465-668 2.64e-14

Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443989 [Multi-domain]  Cd Length: 358  Bit Score: 75.15  E-value: 2.64e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 465 RGIEDPALIEDLGLPVYASVPLSSGQSARSIRTRHKHGARGPLLAISDPADLAIESIRSLRTslhfARLEAKNNILMITG 544
Cdd:COG4963    34 RLALAAVAVASGGAAAAAAAYLSAPTPNLILLEALSESAALLADVLPLSPDELRAALARLLD----PGAARRGRVIAVVG 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 545 SSPFAGKTFVSANLAAVIAQ-AGQRVLLVDGDMRRGTLHQLLGVKTGRGLSDLLVGKAE-----LAEVVQKgPTENVDFI 618
Cdd:COG4963   110 AKGGVGATTLAVNLAWALAReSGRRVLLVDLDLQFGDVALYLDLEPRRGLADALRNPDRldetlLDRALTR-HSSGLSVL 188

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1160660643 619 SrGQVPPNPSELLMHQHFTRFIEAVVPAYDLIIIDTPPILAVTDAAVIGH 668
Cdd:COG4963   189 A-APADLERAEEVSPEAVERLLDLLRRHFDYVVVDLPRGLNPWTLAALEA 237
AAA_31 pfam13614
AAA domain; This family includes a wide variety of AAA domains including some that have lost ...
 550-658 1.21e-11

AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.


Pssm-ID: 433350 [Multi-domain]  Cd Length: 177  Bit Score: 63.76  E-value: 1.21e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 550 GKTFVSANLAAVIAQAGQRVLLVDGDMrRGTLHQLLGVKTGRG---LSDLLVGKAELAEVVQKGPTENVDFIsrgqvppn 626
Cdd:pfam13614  14 GKTTTSVNLAAALAKKGKKVLLIDLDP-QGNATSGLGIDKNNVektIYELLIGECNIEEAIIKTVIENLDLI-------- 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1160660643 627 PSEL--------LMHQHFTRFI-----EAVVPAYDLIIIDTPPIL 658
Cdd:pfam13614  85 PSNIdlagaeieLIGIENRENIlkealEPVKDNYDYIIIDCPPSL 129
WzzB COG3765
LPS O-antigen chain length determinant protein, WzzB/FepE family [Cell wall/membrane/envelope ...
 7-73 1.28e-10

LPS O-antigen chain length determinant protein, WzzB/FepE family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442979 [Multi-domain]  Cd Length: 364  Bit Score: 63.84  E-value: 1.28e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1160660643   7 QAHDDDTIDLNALFGTLLDHKWLIVAITGGFFVIGVLYTLLATPIYQATAVVQVeqktPSLPGLSDL 73
Cdd:COG3765    15 PPSQDDEIDLFELLRTLWQGKLWIIGITLLFALLALVYAFLLPQKWTSTAIVDP----PTVNELGGY 77
YveK COG3944
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
13-108 4.34e-10

Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443144 [Multi-domain]  Cd Length: 309  Bit Score: 61.62  E-value: 4.34e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643  13 TIDLNALFGTLLDHKWLIVAITGGFFVIGVLYTLLATPIYQATAVVQVEQKTPSlpGLSDLSQSLGTTASQAVTEIALIT 92
Cdd:COG3944     1 EMDLREYLRILRRRWWLILLLTLLGALAALASSFLITPVYQASTTLLVSTSSGS--DASDLYQGIQTAQQLVNTYAELLK 78

                          90
                  ....*....|....*.
gi 1160660643  93 SRLVVGQTVDDMRLNV 108
Cdd:COG3944    79 SPAVLEEVIDELGLDL 94
CbiA pfam01656
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ...
 540-715 3.35e-09

CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.


Pssm-ID: 426369 [Multi-domain]  Cd Length: 228  Bit Score: 57.74  E-value: 3.35e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 540 LMITGSSPFAGKTFVSANLAAVIAQAGQRVLLVDGD-MRRGTLHQLLGVKTGRG---LSDLLVGKAELAEVVQKGPTE-- 613
Cdd:pfam01656   1 IAIAGTKGGVGKTTLAANLARALARRGLRVLLIDLDpQSNNSSVEGLEGDIAPAlqaLAEGLKGRVNLDPILLKEKSDeg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 614 NVDFISRGQVPPNPSELLMHQHFTRFIEAVVPA----YDLIIIDTPP------ILAVTDAAVIGHHVGTS-LLVArfGLN 682
Cdd:pfam01656  81 GLDLIPGNIDLEKFEKELLGPRKEERLREALEAlkedYDYVIIDGAPglgellRNALIAADYVIIPLEPEvILVE--DAK 158

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1160660643 683 KQRELALA-KQRFEQNGVELKGAIFNAVEKRTAG 715
Cdd:pfam01656 159 RLGGVIAAlVGGYALLGLKIIGVVLNKVDGDNHG 192
MinD cd02036
septum site-determining protein MinD; Septum site-determining protein MinD is part of the ...
 550-667 2.89e-08

septum site-determining protein MinD; Septum site-determining protein MinD is part of the operon MinCDE that determines the site of the formation of a septum at mid-cell, an important part of bacterial cell division. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein.


Pssm-ID: 349756 [Multi-domain]  Cd Length: 236  Bit Score: 55.29  E-value: 2.89e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 550 GKTFVSANLAAVIAQAGQRVLLVDGDMRRGTLHQLLGVKtGRG---LSDLLVGKAELAEVVQKGP-TENVDFISRGQ--- 622
Cdd:cd02036    13 GKTTTTANLGVALAKLGKKVLLIDADIGLRNLDLILGLE-NRIvytLVDVLEGECRLEQALIKDKrWENLYLLPASQtrd 91

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1160660643 623 ---VPPNPSELLM---HQHF------------TRFIEAVVPAYDLIIIDTPPILAVTDA-AVIG 667
Cdd:cd02036    92 kdaLTPEKLEELVkelKDSFdfilidspagieSGFINAIAPADEAIIVTNPEISSVRDAdRVIG 155
minD_arch TIGR01969
cell division ATPase MinD, archaeal; This model represents the archaeal branch of the MinD ...
 550-655 2.56e-07

cell division ATPase MinD, archaeal; This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.


Pssm-ID: 131024 [Multi-domain]  Cd Length: 251  Bit Score: 52.43  E-value: 2.56e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 550 GKTFVSANLAAVIAQAGQRVLLVDGDMRRGTLHQLLGV-KTGRGLSDLLVGKAELAEVVQKGPTeNVDFIsrgqvPPNPS 628
Cdd:TIGR01969  13 GKTTITANLGVALAKLGKKVLALDADITMANLELILGMeDKPVTLHDVLAGEADIKDAIYEGPF-GVKVI-----PAGVS 86

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1160660643 629 -ELLMHQHFTRF---IEAVVPAYDLIIIDTP 655
Cdd:TIGR01969  87 lEGLRKADPDKLedvLKEIIDDTDFLLIDAP 117
KpsE COG3524
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
240-463 6.89e-06

Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442746 [Multi-domain]  Cd Length: 370  Bit Score: 49.08  E-value: 6.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 240 SGIIGLTYNNADPELARKVLEHV---TTAYVRQNVERNsaeAASQLQFVKDQLPKVRQDLDKAQAAMNAFQTQSHSVDLS 316
Cdd:COG3524   137 SGIITLEVRAFDPEDAQAIAEALlaeSEELVNQLSERA---REDAVRFAEEEVERAEERLRDAREALLAFRNRNGILDPE 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 317 MQTKGLLDQIVGVENNIQQLHMQEADIDRRFTHDHPAYKALQQQMGQLQAQKDKMQKEVG------ALPDTQQQLLKLNR 390
Cdd:COG3524   214 ATAEALLQLIATLEGQLAELEAELAALRSYLSPNSPQVRQLRRRIAALEKQIAAERARLTgasggdSLASLLAEYERLEL 293

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1160660643 391 DVQVSSNTYTSLLnqaQQLDIARAGTVGNVRIVDkAAVDPNVP---VQPRKALIVIIATFLGAFLALAFVFLKQIL 463
Cdd:COG3524   294 EREFAEKAYTSAL---AALEQARIEAARQQRYLA-VIVQPTLPdeaLYPRRLYNILLVFLILLLLYGIGSLLVASI 365
minD CHL00175
septum-site determining protein; Validated
 539-667 2.85e-05

septum-site determining protein; Validated


Pssm-ID: 214385 [Multi-domain]  Cd Length: 281  Bit Score: 46.69  E-value: 2.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 539 ILMITGSSPFAGKTFVSANLAAVIAQAGQRVLLVDGDMRRGTLHQLLGVKTgRGLS---DLLVGKAELAE-VVQKGPTEN 614
Cdd:CHL00175   17 IIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLEN-RVLYtamDVLEGECRLDQaLIRDKRWKN 95

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1160660643 615 VDFIS------RGQVPPNPSELLMHQ------HF----------TRFIEAVVPAYDLIIIDTPPILAVTDA-AVIG 667
Cdd:CHL00175   96 LSLLAisknrqRYNVTRKNMNMLVDSlknrgyDYilidcpagidVGFINAIAPAQEAIVVTTPEITAIRDAdRVAG 171
PRK13869 PRK13869
plasmid-partitioning protein RepA; Provisional
 507-659 5.73e-05

plasmid-partitioning protein RepA; Provisional


Pssm-ID: 139929 [Multi-domain]  Cd Length: 405  Bit Score: 46.21  E-value: 5.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 507 LLAISDPADLAIESIRSLRTSLHFarleaknNILMITGSSPFAGKTFVSANLAAVIAQAGQRVLLVDGDmRRGTLHQLLG 586
Cdd:PRK13869   98 MLAGSTRGRESIDFVPHRRGSEHL-------QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD-PQASLSALLG 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 587 V--KTGRGLSDLLVG-------KAELAEVVQKGPTENVDFIsrgqvpPNPSELLMHQH----------------FTRFIE 641
Cdd:PRK13869  170 VlpETDVGANETLYAairyddtRRPLRDVIRPTYFDGLHLV------PGNLELMEFEHttpkalsdkgtrdglfFTRVAQ 243

                         170       180
                  ....*....|....*....|.
gi 1160660643 642 A---VVPAYDLIIIDTPPILA 659
Cdd:PRK13869  244 AfdeVADDYDVVVIDCPPQLG 264
ParAB_family cd02042
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ...
 549-720 1.05e-04

partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.


Pssm-ID: 349760 [Multi-domain]  Cd Length: 130  Bit Score: 42.53  E-value: 1.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 549 AGKTFVSANLAAVIAQAGQRVLLVDGDMrRGTLHQLLgvktgrglsdllvgkaelaevvqkgptenvdfisrgqvppnps 628
Cdd:cd02042    12 VGKTTLAVNLAAALALRGKRVLLIDLDP-QGSLTSWL------------------------------------------- 47

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 629 ellmhqhftrfieavvpaYDLIIIDTPP--------ILAVTDAAVIGhhVGTSLLVARfGLNKQRELALAKQRFEQNGVE 700
Cdd:cd02042    48 ------------------YDYILIDTPPslglltrnALAAADLVLIP--VQPSPFDLD-GLAKLLDTLEELKKQLNPPLL 106

                         170       180
                  ....*....|....*....|
gi 1160660643 701 LKGAIFNAVEKRTAGYSEYA 720
Cdd:cd02042   107 ILGILLTRVDPRTKLAREVL 126
SIMIBI cd01983
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ...
 538-575 1.98e-04

SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.


Pssm-ID: 349751 [Multi-domain]  Cd Length: 107  Bit Score: 41.26  E-value: 1.98e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1160660643 538 NILMITGSSPFAGKTFVSANLAAVIAQAGQRVLLVDGD 575
Cdd:cd01983     1 RVIAVTGGKGGVGKTTLAAALAVALAAKGYKVLLIDLD 38
CooC COG3640
CO dehydrogenase nickel-insertion accessory protein CooC1 [Posttranslational modification, ...
 550-605 1.33e-03

CO dehydrogenase nickel-insertion accessory protein CooC1 [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442857 [Multi-domain]  Cd Length: 249  Bit Score: 40.92  E-value: 1.33e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1160660643 550 GKTFVSANLAAVIAQAGQRVLLVDGDMRRGtLHQLLGVKTGRGLSDLLVGKAELAE 605
Cdd:COG3640    12 GKTTLSALLARYLAEKGKPVLAVDADPNAN-LAEALGLEVEADLIKPLGEMRELIK 66
AAA_26 pfam13500
AAA domain; This domain is found in a number of proteins involved in cofactor biosynthesis ...
 540-707 3.42e-03

AAA domain; This domain is found in a number of proteins involved in cofactor biosynthesis such as dethiobiotin synthase and cobyric acid synthase. This domain contains a P-loop motif.


Pssm-ID: 433259 [Multi-domain]  Cd Length: 198  Bit Score: 39.55  E-value: 3.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 540 LMITGSSPFAGKTFVSANLAAVIAQAGQRV---------LLVDGDmrRGTLHQLLGVKTGRGLSDLLVGKAELAEVV--- 607
Cdd:pfam13500   3 LFVTGTDTGVGKTVVSLGLARALKRRGVKVgywkpvqtgLVEDGD--SELVKRLLGLDQSYEDPEPFRLSAPLSPHLaar 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160660643 608 QKGPTENVDFIsRGQVPPNpSELLmhqhftrFIEAVVP-----AYDLIIIDtppILAVTDAAVIghhvgtslLVARFGLN 682
Cdd:pfam13500  81 QEGVTIDLEKI-IYELPAD-ADPV-------VVEGAGGllvpiNEDLLNAD---IAANLGLPVI--------LVARGGLG 140

                         170       180
                  ....*....|....*....|....*
gi 1160660643 683 KQRELALAKQRFEQNGVELKGAIFN 707
Cdd:pfam13500 141 TINHTLLTLEALRQRGIPVLGVILN 165
PRK10381 PRK10381
LPS O-antigen length regulator; Provisional
 8-58 1.00e-02

LPS O-antigen length regulator; Provisional


Pssm-ID: 182422 [Multi-domain]  Cd Length: 377  Bit Score: 38.89  E-value: 1.00e-02
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1160660643   8 AHDDDTIDLNALFGTLLDHKWLIVAITGGFFVIGVLYTLLATPIYQATAVV 58
Cdd:PRK10381   21 SPSNNEIDLFELISVLWKAKKTIIAITFAFACAGLLISFILPQKWTSTAVV 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH