|
Name |
Accession |
Description |
Interval |
E-value |
| NlpA |
COG1464 |
ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion ... |
28-264 |
4.19e-118 |
|
ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism];
Pssm-ID: 441073 [Multi-domain] Cd Length: 270 Bit Score: 338.62 E-value: 4.19e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 28 TIKVGVTGGPHAQVMEEVRKVAARSGLDIRIVEFSDYVQPNAALAAGDLDANSYQHAPYLEAQVKDRGYRIVKVADTVTF 107
Cdd:COG1464 34 TIKVGATPGPHAEILEVVKPELAKKGIDLEIVEFTDYVQPNEALADGEIDANYFQHIPYLDNFNKENGYDLVPVGKTHIE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 108 PMGIYSKRVKSLAALQSGARIAIPNDPTNGGRALLLLQKQGLLKLRDGAGLKATRFDVVDNPKQLKIVELDAAQIPRSLA 187
Cdd:COG1464 114 PMGLYSKKYKSLDELPDGATIAIPNDPTNQGRALLLLQKAGLIKLKDGVGLLATVKDITENPKNLKFVELDAAQLPRSLD 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1171045112 188 DVDAAAINTNYAMEAGLKPKQDAIAIEGPNGPYANILAVRAEDKDKPWVAKLVAAYRSPDVKRFIERRFGGAVIAAW 264
Cdd:COG1464 194 DVDAAVINGNYALEAGLDPTKDALFLEDKDSPYANIIVVREDDKDDPAIKKLVEAYQSDEVKKFIEEKYKGAVVPAW 270
|
|
| Lipoprotein_9 |
pfam03180 |
NlpA lipoprotein; This entry represents bacterial lipoproteins that belong to the NlpA family. ... |
29-264 |
5.76e-101 |
|
NlpA lipoprotein; This entry represents bacterial lipoproteins that belong to the NlpA family. It contains several antigenic members, that may be involved in bacterial virulence. This entry includes the D-methionine binding lipoprotein MetQ, which is the substrate-binding component of a D-methionine permease, a binding protein-dependent, ATP-driven transport system. Other members of this family, such as NlpA, have been identified as putative substrate-binding components of ABC transporters. NlpA, is an inner-membrane-anchored lipoprotein that has been shown to have a minor role in methionine import.
Pssm-ID: 427184 Cd Length: 236 Bit Score: 294.17 E-value: 5.76e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 29 IKVGVTGGPHAQVMEEVRKVAARSGLDIRIVEFSDYVQPNAALAAGDLDANSYQHAPYLEAQVKDRGYRIVKVADTVTFP 108
Cdd:pfam03180 1 LKVGATPGPHAEILEVAKPLLKKKGLDLEIVEFTDYVQPNTALADGEIDANYFQHLPYLDQFNKEKGLDLVAVGNVHIEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 109 MGIYSKRVKSLAALQSGARIAIPNDPTNGGRALLLLQKQGLLKLRDGAGLKATRFDVVDNPKQLKIVELDAAQIPRSLAD 188
Cdd:pfam03180 81 MGLYSKKYKSLSELPDGATIAVPNDPSNEGRALLLLQKAGLIKLKDGKGLLATVKDITENPKNLKIKELEAAQLPRALDD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1171045112 189 VDAAAINTNYAMEAGLKPKQDAIAIEGPNGPYANILAVRAEDKDKPWVAKLVAAYRSPDVKRFIERRFGGAVIAAW 264
Cdd:pfam03180 161 VDAAVINTNYALEAGLNPKKDALFEEDKDSPYVNIIVVREDDKDDEAVKKLVEAYQSEEVKKFIEKKYGGAVIPAW 236
|
|
| PBP2_lipoprotein_IlpA_like |
cd13598 |
Toll-like receptor 2-activating lipoprotein IlpA from Vibrio vulnificus and similar ... |
29-253 |
9.17e-101 |
|
Toll-like receptor 2-activating lipoprotein IlpA from Vibrio vulnificus and similar lipoproteins; the type 2 periplasmic binding protein fold; This group includes the IlpA protein which has both structural and sequential homology to the MetQ family of substrate-binding protein, and thus belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.
Pssm-ID: 270316 Cd Length: 227 Bit Score: 293.10 E-value: 9.17e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 29 IKVGVTGGPHAQVMEEVRKVAARSGLDIRIVEFSDYVQPNAALAAGDLDANSYQHAPYLEAQVKDRGYRIVKVADTVTFP 108
Cdd:cd13598 2 IKVGVIRGPDAQIWEVVQKVAKEKGLDVELVTFNDYAQPNEALAAGDLDANAFQHKPYLDAQIKARGYKLVIVGNTFVYP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 109 MGIYSKRVKSLAALQSGARIAIPNDPTNGGRALLLLQKQGLLKLRDGAGLKATRFDVVDNPKQLKIVELDAAQIPRSLAD 188
Cdd:cd13598 82 IGLYSKKIKSLAELPNGATVAIPNDPSNEGRALLLLQKEGLIKLKDGVGLLATVRDIAENPKKLKIVELDAGQLPRALDD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1171045112 189 VDAAAINTNYAMEAGLKPKQDAIAIEGPNGPYANILAVRAEDKDKPWVAKLVAAYRSPDVKRFIE 253
Cdd:cd13598 162 VDLAAINTDYASKAGLTPARDAIAQEDKRSPYANVIAVREDDKDAPWVKTLVQAYQSEEVKAFAL 226
|
|
| metQ |
PRK11063 |
D-methionine ABC transporter substrate-binding protein MetQ; |
29-264 |
3.84e-77 |
|
D-methionine ABC transporter substrate-binding protein MetQ;
Pssm-ID: 182939 [Multi-domain] Cd Length: 271 Bit Score: 234.66 E-value: 3.84e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 29 IKVGVTGGPHAQVMEEVRKVA-ARSGLDIRIVEFSDYVQPNAALAAGDLDANSYQHAPYLEAQVKDRGYRIVKVADTVTF 107
Cdd:PRK11063 33 IKVGVIVGAEQQVAEVAQKVAkEKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYKLVAVGNTFVY 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 108 PMGIYSKRVKSLAALQSGARIAIPNDPTNGGRALLLLQKQGLLKLRDGAGLKATRFDVVDNPKQLKIVELDAAQIPRSLA 187
Cdd:PRK11063 113 PIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDIVENPKNLKIVELEAPQLPRSLD 192
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1171045112 188 D--VDAAAINTNYAMEAGLKPKQDAIAIEGPNGPYANILAVRAEDKDKPWVAKLVAAYRSPDVKRFIERRFGGAVIAAW 264
Cdd:PRK11063 193 DaqIALAVINTTYASQIGLTPAKDGIFVEDKDSPYVNLIVAREDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAVKGW 271
|
|
| TIGR00363 |
TIGR00363 |
lipoprotein, YaeC family; This family of putative lipoproteins contains a consensus site for ... |
29-264 |
5.90e-74 |
|
lipoprotein, YaeC family; This family of putative lipoproteins contains a consensus site for lipoprotein signal sequence cleavage. Included in this family is the E. coli hypothetical protein yaeC. About half of the proteins between the noise and trusted cutoffs contain the consensus lipoprotein signature and may belong to this family. [Cell envelope, Other]
Pssm-ID: 129460 Cd Length: 258 Bit Score: 226.32 E-value: 5.90e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 29 IKVGVTGGPHAQVMEEVRKVAA-RSGLDIRIVEFSDYVQPNAALAAGDLDANSYQHAPYLEAQVKDRGYRIVKVADTVTF 107
Cdd:TIGR00363 20 IKVGVISGAEQQVAEVAAKVAKeKYGLDVELVEFNDYALPNEAVSKGDLDANAFQHKPYLDQDAKAKGYKLVAVGNTFVY 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 108 PMGIYSKRVKSLAALQSGARIAIPNDPTNGGRALLLLQKQGLLKLRDGAGLKATRFDVVDNPKQLKIVELDAAQIPRSLA 187
Cdd:TIGR00363 100 PLAGYSKKIKNVNELQDGAKVAVPNDPTNLGRALLLLQKQGLIKLKDGNGLLPTVLDIVENPKKLNITELETSQLPRALD 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1171045112 188 D--VDAAAINTNYAMEAGLKPKQDAIAIEGPNGPYANILAVRAEDKDKPWVAKLVAAYRSPDVKRFIERRFGGAVIAAW 264
Cdd:TIGR00363 180 DpkVDLAVINTTYAGQVGLNPQDDGVFVEDKDSPYVNIIVSREDNKDAENVKDFIQSYQSEEVYQAAQKHFNGGAVKGW 258
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| NlpA |
COG1464 |
ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion ... |
28-264 |
4.19e-118 |
|
ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism];
Pssm-ID: 441073 [Multi-domain] Cd Length: 270 Bit Score: 338.62 E-value: 4.19e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 28 TIKVGVTGGPHAQVMEEVRKVAARSGLDIRIVEFSDYVQPNAALAAGDLDANSYQHAPYLEAQVKDRGYRIVKVADTVTF 107
Cdd:COG1464 34 TIKVGATPGPHAEILEVVKPELAKKGIDLEIVEFTDYVQPNEALADGEIDANYFQHIPYLDNFNKENGYDLVPVGKTHIE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 108 PMGIYSKRVKSLAALQSGARIAIPNDPTNGGRALLLLQKQGLLKLRDGAGLKATRFDVVDNPKQLKIVELDAAQIPRSLA 187
Cdd:COG1464 114 PMGLYSKKYKSLDELPDGATIAIPNDPTNQGRALLLLQKAGLIKLKDGVGLLATVKDITENPKNLKFVELDAAQLPRSLD 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1171045112 188 DVDAAAINTNYAMEAGLKPKQDAIAIEGPNGPYANILAVRAEDKDKPWVAKLVAAYRSPDVKRFIERRFGGAVIAAW 264
Cdd:COG1464 194 DVDAAVINGNYALEAGLDPTKDALFLEDKDSPYANIIVVREDDKDDPAIKKLVEAYQSDEVKKFIEEKYKGAVVPAW 270
|
|
| Lipoprotein_9 |
pfam03180 |
NlpA lipoprotein; This entry represents bacterial lipoproteins that belong to the NlpA family. ... |
29-264 |
5.76e-101 |
|
NlpA lipoprotein; This entry represents bacterial lipoproteins that belong to the NlpA family. It contains several antigenic members, that may be involved in bacterial virulence. This entry includes the D-methionine binding lipoprotein MetQ, which is the substrate-binding component of a D-methionine permease, a binding protein-dependent, ATP-driven transport system. Other members of this family, such as NlpA, have been identified as putative substrate-binding components of ABC transporters. NlpA, is an inner-membrane-anchored lipoprotein that has been shown to have a minor role in methionine import.
Pssm-ID: 427184 Cd Length: 236 Bit Score: 294.17 E-value: 5.76e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 29 IKVGVTGGPHAQVMEEVRKVAARSGLDIRIVEFSDYVQPNAALAAGDLDANSYQHAPYLEAQVKDRGYRIVKVADTVTFP 108
Cdd:pfam03180 1 LKVGATPGPHAEILEVAKPLLKKKGLDLEIVEFTDYVQPNTALADGEIDANYFQHLPYLDQFNKEKGLDLVAVGNVHIEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 109 MGIYSKRVKSLAALQSGARIAIPNDPTNGGRALLLLQKQGLLKLRDGAGLKATRFDVVDNPKQLKIVELDAAQIPRSLAD 188
Cdd:pfam03180 81 MGLYSKKYKSLSELPDGATIAVPNDPSNEGRALLLLQKAGLIKLKDGKGLLATVKDITENPKNLKIKELEAAQLPRALDD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1171045112 189 VDAAAINTNYAMEAGLKPKQDAIAIEGPNGPYANILAVRAEDKDKPWVAKLVAAYRSPDVKRFIERRFGGAVIAAW 264
Cdd:pfam03180 161 VDAAVINTNYALEAGLNPKKDALFEEDKDSPYVNIIVVREDDKDDEAVKKLVEAYQSEEVKKFIEKKYGGAVIPAW 236
|
|
| PBP2_lipoprotein_IlpA_like |
cd13598 |
Toll-like receptor 2-activating lipoprotein IlpA from Vibrio vulnificus and similar ... |
29-253 |
9.17e-101 |
|
Toll-like receptor 2-activating lipoprotein IlpA from Vibrio vulnificus and similar lipoproteins; the type 2 periplasmic binding protein fold; This group includes the IlpA protein which has both structural and sequential homology to the MetQ family of substrate-binding protein, and thus belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.
Pssm-ID: 270316 Cd Length: 227 Bit Score: 293.10 E-value: 9.17e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 29 IKVGVTGGPHAQVMEEVRKVAARSGLDIRIVEFSDYVQPNAALAAGDLDANSYQHAPYLEAQVKDRGYRIVKVADTVTFP 108
Cdd:cd13598 2 IKVGVIRGPDAQIWEVVQKVAKEKGLDVELVTFNDYAQPNEALAAGDLDANAFQHKPYLDAQIKARGYKLVIVGNTFVYP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 109 MGIYSKRVKSLAALQSGARIAIPNDPTNGGRALLLLQKQGLLKLRDGAGLKATRFDVVDNPKQLKIVELDAAQIPRSLAD 188
Cdd:cd13598 82 IGLYSKKIKSLAELPNGATVAIPNDPSNEGRALLLLQKEGLIKLKDGVGLLATVRDIAENPKKLKIVELDAGQLPRALDD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1171045112 189 VDAAAINTNYAMEAGLKPKQDAIAIEGPNGPYANILAVRAEDKDKPWVAKLVAAYRSPDVKRFIE 253
Cdd:cd13598 162 VDLAAINTDYASKAGLTPARDAIAQEDKRSPYANVIAVREDDKDAPWVKTLVQAYQSEEVKAFAL 226
|
|
| PBP2_lipoprotein_Tp32 |
cd13597 |
The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum ... |
28-262 |
6.88e-94 |
|
The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold; This group includes the lipoprotein Tp32, a periplasmic component of a methionine uptake transporter system, and its closely related homologs. The Tp32 has both structural and sequential homology to the MetQ family of substrate-binding protein, and thus it belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.
Pssm-ID: 270315 Cd Length: 236 Bit Score: 276.08 E-value: 6.88e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 28 TIKVGVTGGPHAQVMEEVRKVAARSGLDIRIVEFSDYVQPNAALAAGDLDANSYQHAPYLEAQVKDRGYRIVKVADTVTF 107
Cdd:cd13597 1 TLKVGATPVPHAEILEFIKPELKKQGIDLEIVEFTDYVQPNTALADGELDANYFQHVPYLESFNKEKGYDLVAVAGVHLE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 108 PMGIYSKRVKSLAALQSGARIAIPNDPTNGGRALLLLQKQGLLKLRDGAGLKATRFDVVDNPKQLKIVELDAAQIPRSLA 187
Cdd:cd13597 81 PMGLYSKKYKSLEDLPDGATIAIPNDPTNQGRALLLLEEAGLITLKDGAGLTATVKDIVKNPKNLKFKELEAAQLPRSLD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1171045112 188 DVDAAAINTNYAMEAGLKPKQDAIAIEGPNG-PYANILAVRAEDKDKPWVAKLVAAYRSPDVKRFIERRFGGAVIA 262
Cdd:cd13597 161 DVDAAVINGNYALEAGLNPKKDALALEDKDNsPYANILVVRKGNEDDPRIKKLAKALQSDEVKDFIEEKYDGAVVP 236
|
|
| PBP2_lipoprotein_MetQ_like |
cd13526 |
The periplasmic-binding component of ABC-type methionine uptake transporter system and its ... |
28-253 |
6.60e-93 |
|
The periplasmic-binding component of ABC-type methionine uptake transporter system and its related lipoproteins; the type 2 periplasmic-binding protein fold; This family represents the periplasmic substrate-binding domain of ATP-binding cassette (ABC) transporter involved in uptake of methionine (MetQ) and its related homologs. Members of the MetQ-like family include the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum, the membrane-associated lipoprotein-9 GmpC from Staphylococcus aureus, and Toll-like receptor 2-activating lipoprotein IlpA from Vibrio vulnificus. They all function as a receptor for methionine. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.
Pssm-ID: 270244 Cd Length: 228 Bit Score: 273.42 E-value: 6.60e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 28 TIKVGVTGGPHAQVMEEVRKVAARSGLDIRIVEFSDYVQPNAALAAGDLDANSYQHAPYLEAQVKDRGYRIVKVADTVTF 107
Cdd:cd13526 1 KLKIGVTAGPSADVVEAAKKEAKKKGYELELVVFTDYVAPNEALNDGSIDANFFQHVPFLDQFNKERNGDLVKVGKTVIA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 108 PMGIYSKRVKSLAALQSGARIAIPNDPTNGGRALLLLQKQGLLKLRDGAGLKATRFDVVDNPKQLKIVELDAAQIPRSLA 187
Cdd:cd13526 81 PIGLYSKKYKSLDELPDGARIAIPNDPSNGARALLLLEDAGLIKLKDGVGLFATVLDITENPKNLEIVEVDAAQLPRSLD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1171045112 188 DVDAAAINTNYAMEAGLKPKQDAIAIE-GPNGPYANILAVRAEDKDKPWVAKLVAAYRSPDVKRFIE 253
Cdd:cd13526 161 DVDAAVINGNYAISAGLDPRKDAIFLEdSDASPYVNVLAVREDNKDDPWVKALVEAYQSEEVRKFLK 227
|
|
| metQ |
PRK11063 |
D-methionine ABC transporter substrate-binding protein MetQ; |
29-264 |
3.84e-77 |
|
D-methionine ABC transporter substrate-binding protein MetQ;
Pssm-ID: 182939 [Multi-domain] Cd Length: 271 Bit Score: 234.66 E-value: 3.84e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 29 IKVGVTGGPHAQVMEEVRKVA-ARSGLDIRIVEFSDYVQPNAALAAGDLDANSYQHAPYLEAQVKDRGYRIVKVADTVTF 107
Cdd:PRK11063 33 IKVGVIVGAEQQVAEVAQKVAkEKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYKLVAVGNTFVY 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 108 PMGIYSKRVKSLAALQSGARIAIPNDPTNGGRALLLLQKQGLLKLRDGAGLKATRFDVVDNPKQLKIVELDAAQIPRSLA 187
Cdd:PRK11063 113 PIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDIVENPKNLKIVELEAPQLPRSLD 192
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1171045112 188 D--VDAAAINTNYAMEAGLKPKQDAIAIEGPNGPYANILAVRAEDKDKPWVAKLVAAYRSPDVKRFIERRFGGAVIAAW 264
Cdd:PRK11063 193 DaqIALAVINTTYASQIGLTPAKDGIFVEDKDSPYVNLIVAREDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAVKGW 271
|
|
| TIGR00363 |
TIGR00363 |
lipoprotein, YaeC family; This family of putative lipoproteins contains a consensus site for ... |
29-264 |
5.90e-74 |
|
lipoprotein, YaeC family; This family of putative lipoproteins contains a consensus site for lipoprotein signal sequence cleavage. Included in this family is the E. coli hypothetical protein yaeC. About half of the proteins between the noise and trusted cutoffs contain the consensus lipoprotein signature and may belong to this family. [Cell envelope, Other]
Pssm-ID: 129460 Cd Length: 258 Bit Score: 226.32 E-value: 5.90e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 29 IKVGVTGGPHAQVMEEVRKVAA-RSGLDIRIVEFSDYVQPNAALAAGDLDANSYQHAPYLEAQVKDRGYRIVKVADTVTF 107
Cdd:TIGR00363 20 IKVGVISGAEQQVAEVAAKVAKeKYGLDVELVEFNDYALPNEAVSKGDLDANAFQHKPYLDQDAKAKGYKLVAVGNTFVY 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 108 PMGIYSKRVKSLAALQSGARIAIPNDPTNGGRALLLLQKQGLLKLRDGAGLKATRFDVVDNPKQLKIVELDAAQIPRSLA 187
Cdd:TIGR00363 100 PLAGYSKKIKNVNELQDGAKVAVPNDPTNLGRALLLLQKQGLIKLKDGNGLLPTVLDIVENPKKLNITELETSQLPRALD 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1171045112 188 D--VDAAAINTNYAMEAGLKPKQDAIAIEGPNGPYANILAVRAEDKDKPWVAKLVAAYRSPDVKRFIERRFGGAVIAAW 264
Cdd:TIGR00363 180 DpkVDLAVINTTYAGQVGLNPQDDGVFVEDKDSPYVNIIVSREDNKDAENVKDFIQSYQSEEVYQAAQKHFNGGAVKGW 258
|
|
| PRK09861 |
PRK09861 |
lipoprotein NlpA; |
29-264 |
3.04e-69 |
|
lipoprotein NlpA;
Pssm-ID: 182119 Cd Length: 272 Bit Score: 214.88 E-value: 3.04e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 29 IKVGVTGGPHAQVMEEVRKVAA-RSGLDIRIVEFSDYVQPNAALAAGDLDANSYQHAPYLEAQVKDRGYRIVKVADTVTF 107
Cdd:PRK09861 34 IKVGVINGAEQDVAEVAKKVAKeKYGLDVELVGFSGSLLPNDATNHGELDANVFQHRPFLEQDNQAHGYKLVAVGNTFVF 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 108 PMGIYSKRVKSLAALQSGARIAIPNDPTNGGRALLLLQKQGLLKLRDGAGLKATRFDVVDNPKQLKIVELDAAQIPRSLA 187
Cdd:PRK09861 114 PMAGYSKKIKTVAQIKEGATVAIPNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLD 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1171045112 188 D--VDAAAINTNYAMEAGLKPKQDAIAIEGPNGPYANILAVRAEDKDKPWVAKLVAAYRSPDVKRFIERRFGGAVIAAW 264
Cdd:PRK09861 194 DpkVDVAIISTTYIQQTGLSPVHDSVFIEDKNSPYVNILVAREDNKNAENVKEFLQSYQSPEVAKAAETIFNGGAVPGW 272
|
|
| PBP2_lipoprotein_GmpC |
cd13596 |
The periplasmic substrate-binding domain of the membrane-associated lipoprotein-9 GmpC; ... |
28-253 |
9.16e-66 |
|
The periplasmic substrate-binding domain of the membrane-associated lipoprotein-9 GmpC; contains the type 2 periplasmic-binding protein fold; This group includes the membrane-associated lipoprotein-9 from Staphylococcus aureus that binds the dipeptide glycylmethionine (GlyMet). The lipoprotein-9 has both structural and sequential homology to the MetQ family of substrate-binding protein. The GlyMet binding protein belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.
Pssm-ID: 270314 Cd Length: 230 Bit Score: 204.52 E-value: 9.16e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 28 TIKVGVTGgPHAQVMEEVRKVAARSGLDIRIVEFSDYVQPNAALAAGDLDANSYQHAPYLEAQVKDRGYRIVKVADTVTF 107
Cdd:cd13596 1 TVKIGVTG-EDTDIWDKIVEEAEEAGIKLELVNFSDYSQPNKALNDGDIDLNAFQHYAYLVQYNSKNNADLTAIGDTVIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 108 PMGIYSKRVKSLAALQSGARIAIPNDPTNGGRALLLLQKQGLLKLRDGAGLKATRFDVVDNPKQLKIVELDAAQIPRSLA 187
Cdd:cd13596 80 PMGIYSKKITSVDELPDGAKIAIPNDPSNLSRALFILQAAGLIKLKKDAGDFPTVNDITENPKNLEIVPVDADQVYRALN 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 188 DVDAAAINTNYAMEAGLKPKQDAIAIEGPNG----PYANILAVRAEDKDKPWVAKLVAAYRSPDVKRFIE 253
Cdd:cd13596 160 DVDAAVINNTFALDAGLDPKKDAIFLEDPSSygskPYINLIAVREEDKDNPLYKKLVETYHDERVQKAVE 229
|
|
| PBP2_lipoprotein_Gna1946 |
cd13599 |
The membrane-associated lipoprotein Gna1946 from Neisseria meningitidis; the type 2 ... |
28-252 |
1.13e-63 |
|
The membrane-associated lipoprotein Gna1946 from Neisseria meningitidis; the type 2 periplasmic binding protein fold; Gna1946 shares significant structural and sequence homology with the periplasmic substrate-binding domain of ATP-binding cassette (ABC) transporter involved in uptake of methionine (MetQ). The members of the MetQ-like family include the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum, the membrane-associated lipoprotein-9 GmpC from Staphylococcus aureus, and Toll-like receptor 2-activating lipoprotein IlpA from Vibrio vulnificus. They all function as a receptor for methionine. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.
Pssm-ID: 270317 Cd Length: 228 Bit Score: 198.78 E-value: 1.13e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 28 TIKVGVTGGPHA-QVMEEVRKVAARSGLDIRIVEFSDYVQPNAALAAGDLDANSYQHAPYLEAQVKDRGYRIVKVADTVT 106
Cdd:cd13599 1 TIVIGFTPGPYGdMVKNGVAPYLEKKGYEVKLKEFTDYVQPNNALANGEIDANVFQHKPYLDAFNKENGLDLVGIVQVPT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 107 FPMGIYSKRVKSLAALQSGARIAIPNDPTNGGRALLLLQKQGLLKLRDGAG-LKATRFDVVDNPKQLKIVELDAAQIPRS 185
Cdd:cd13599 81 PPMGLYSNKHKSLEEVKDGATVAIPNDPSNLARALVMLQDLGWITLKDNIDpLKASVNDIAENPKNIKIVELEAAQLPRS 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1171045112 186 LADVDAAAINTNYAMEAGLKPKqDAIAIEGPNGPYANILAVRAEDKDKPWVAKLVAAYRSPDVKRFI 252
Cdd:cd13599 161 LDDVDFAAIQGNFAISSGIKLT-SALALEEMTDPYVNVVAVKTADKDKQFAKDVTAAYNSDAFKAYI 226
|
|
| PBP2_lipoprotein_like_1 |
cd13600 |
Putative periplasmic-binding component of ABC-type methionine uptake transporter system-like; ... |
28-253 |
8.92e-53 |
|
Putative periplasmic-binding component of ABC-type methionine uptake transporter system-like; the type 2 periplasmic binding protein fold; This subgroup shares significant sequence homology with the periplasmic substrate-binding domain of ATP-binding cassette (ABC) transporter involved in uptake of methionine (MetQ). The members of the MetQ-like family include the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum, the membrane-associated lipoprotein-9 GmpC from Staphylococcus aureus, and Toll-like receptor 2-activating lipoprotein IlpA from Vibrio vulnificus. They all function as a receptor for methionine. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.
Pssm-ID: 270318 Cd Length: 228 Bit Score: 170.98 E-value: 8.92e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 28 TIKVGVTGGPHAQVMEEVRKVAARSGLDIRIVEFSDYVQPNAALAAGDLDANSYQHAPYLEAQVKDRGYRIVKVADTVTF 107
Cdd:cd13600 1 TLKVATNSGPMTEILEYIAAELAPDGITIEPVQVSDYVQANRAVAAGEIDANFFQHQPFMEQFNEANGFELVAVQPIYHW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1171045112 108 PMGIYSKRVKSLAALQSGARIAIPNDPTNGGRALLLLQKQGLLKLRDGAG-LKATRFDVVDNPKQLKIVELDAAQIPRSL 186
Cdd:cd13600 81 AFGFYSKKYKSVEDLPDGAKVAIPNDPANQARALLLLQRAGLITLKPGVDpTTATLADIVTNPKNLKFTEVDLLALPRAL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1171045112 187 ADVDAAAINTNYAMEAGLKPKQDAIAIEGPNGPYANILAVRAEDKDKPWVAKLVAAYRSPDVKRFIE 253
Cdd:cd13600 161 DDVDLAFGYPSYFDAAGLTPKDGILLEEPDAKRFAIQLVAREDNKDSPKIKKLKEAFTDPRVRKFLE 227
|
|
| |
