NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1172335010|ref|WP_080718287|]
View 

PTS lactose/cellobiose transporter subunit IIA [Xenorhabdus bovienii]

Protein Classification

PTS lactose/cellobiose transporter subunit IIA( domain architecture ID 10003680)

PTS lactose/cellobiose transporter subunit IIA helps catalyze the phosphorylation of incoming sugar substrates leading to their translocation across the cell membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CelC COG1447
Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and ...
 11-107 5.86e-39

Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism];


:

Pssm-ID: 441056  Cd Length: 100  Bit Score: 125.63  E-value: 5.86e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172335010  11 EQQIVELLVHAGSARSSALMALQQAKAGDFQQAEMLMEEARQETRAAHAIQTKLIGLDEGCGKLPINLITVHAQDHLMNA 90
Cdd:COG1447     1 EEIAMEIILHAGNARSLAMEALKAAKEGDFEEAEELLKEADEELLEAHKVQTELIQKEAGGEKVEVSLLLVHAQDHLMTA 80

                          90
                  ....*....|....*..
gi 1172335010  91 MVIQDLASNMIDLYQRL 107
Cdd:COG1447    81 MTEKDLAKELIELYKKL 97
 
Name Accession Description Interval E-value
CelC COG1447
Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and ...
 11-107 5.86e-39

Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism];


Pssm-ID: 441056  Cd Length: 100  Bit Score: 125.63  E-value: 5.86e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172335010  11 EQQIVELLVHAGSARSSALMALQQAKAGDFQQAEMLMEEARQETRAAHAIQTKLIGLDEGCGKLPINLITVHAQDHLMNA 90
Cdd:COG1447     1 EEIAMEIILHAGNARSLAMEALKAAKEGDFEEAEELLKEADEELLEAHKVQTELIQKEAGGEKVEVSLLLVHAQDHLMTA 80

                          90
                  ....*....|....*..
gi 1172335010  91 MVIQDLASNMIDLYQRL 107
Cdd:COG1447    81 MTEKDLAKELIELYKKL 97
PTS_IIA pfam02255
PTS system, Lactose/Cellobiose specific IIA subunit; The bacterial phosphoenolpyruvate: sugar ...
 12-105 2.81e-36

PTS system, Lactose/Cellobiose specific IIA subunit; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.


Pssm-ID: 460510  Cd Length: 94  Bit Score: 118.69  E-value: 2.81e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172335010  12 QQIVELLVHAGSARSSALMALQQAKAGDFQQAEMLMEEARQETRAAHAIQTKLIGLDEGCGKLPINLITVHAQDHLMNAM 91
Cdd:pfam02255   1 EIAMEIILHAGNARSLAMEALKAAKEGDFEEAEELLKEADEELLEAHKAQTELIQKEAGGEKVEVSLLLVHAQDHLMTAM 80

                          90
                  ....*....|....
gi 1172335010  92 VIQDLASNMIDLYQ 105
Cdd:pfam02255  81 TEKDLAKELIELYK 94
PTS_IIA_lac cd00215
PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial ...
 11-106 2.00e-29

PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.


Pssm-ID: 238133  Cd Length: 97  Bit Score: 101.51  E-value: 2.00e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172335010  11 EQQIVELLVHAGSARSSALMALQQAKAGDFQQAEMLMEEARQETRAAHAIQTKLIGLDEGCGKLPINLITVHAQDHLMNA 90
Cdd:cd00215     2 ELISFQIILHAGNARSKALEALKAAKEGDFAEAEELLEEANDSLNEAHHAQTKLLQQEASGEKVEVSLLLVHAQDHLMTT 81

                          90
                  ....*....|....*.
gi 1172335010  91 MVIQDLASNMIDLYQR 106
Cdd:cd00215    82 ITLKDLAKEMIELYKK 97
EIIA-LAC TIGR00823
phosphotransferase system enzyme II, lactose-specific, factor III; The PTS Lactose-N,N? ...
 8-106 1.37e-28

phosphotransferase system enzyme II, lactose-specific, factor III; The PTS Lactose-N,N?-Diacetylchitobiose-b-glucoside (Lac) Family (TC 4.A.3)Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as the E. coli N,N?-diacetylchitobiose (Chb)permease which can transport aromatic b-glucosides and cellobiose as well as the chitin disaccharide, Chb, but only Chb induces expression of the chboperon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 129903  Cd Length: 99  Bit Score: 99.43  E-value: 1.37e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172335010   8 QDFEQQIVELLVHAGSARSSALMALQQAKAGDFQQAEMLMEEARQETRAAHAIQTKLIGLDEGCGKLPINLITVHAQDHL 87
Cdd:TIGR00823   1 EEMELLGFEIVAYAGDARSKALEALKAAKAGDFAKARALVEQAGMCINEAHLAQTSLLAQEAGGGKMEVSLTMVHGQDHL 80

                          90
                  ....*....|....*....
gi 1172335010  88 MNAMVIQDLASNMIDLYQR 106
Cdd:TIGR00823  81 MTTILLKDLAAELIELYKR 99
PRK10454 PRK10454
PTS N,N'-diacetylchitobiose transporter subunit IIA;
6-107 2.25e-27

PTS N,N'-diacetylchitobiose transporter subunit IIA;


Pssm-ID: 182472  Cd Length: 115  Bit Score: 96.88  E-value: 2.25e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172335010   6 EQQDFEQQIVELLVHAGSARSSALMALQQAKAGDFQQAEMLMEEARQETRAAHAIQTKLIGLDEGCGKLPINLITVHAQD 85
Cdd:PRK10454   13 EAEELEEVVMGLIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSRMALNEAHLVQTKLIEGDQGEGKMKVSLVLVHAQD 92

                          90       100
                  ....*....|....*....|..
gi 1172335010  86 HLMNAMVIQDLASNMIDLYQRL 107
Cdd:PRK10454   93 HLMTSMLARELITELIELHEKL 114
 
Name Accession Description Interval E-value
CelC COG1447
Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and ...
 11-107 5.86e-39

Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism];


Pssm-ID: 441056  Cd Length: 100  Bit Score: 125.63  E-value: 5.86e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172335010  11 EQQIVELLVHAGSARSSALMALQQAKAGDFQQAEMLMEEARQETRAAHAIQTKLIGLDEGCGKLPINLITVHAQDHLMNA 90
Cdd:COG1447     1 EEIAMEIILHAGNARSLAMEALKAAKEGDFEEAEELLKEADEELLEAHKVQTELIQKEAGGEKVEVSLLLVHAQDHLMTA 80

                          90
                  ....*....|....*..
gi 1172335010  91 MVIQDLASNMIDLYQRL 107
Cdd:COG1447    81 MTEKDLAKELIELYKKL 97
PTS_IIA pfam02255
PTS system, Lactose/Cellobiose specific IIA subunit; The bacterial phosphoenolpyruvate: sugar ...
 12-105 2.81e-36

PTS system, Lactose/Cellobiose specific IIA subunit; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.


Pssm-ID: 460510  Cd Length: 94  Bit Score: 118.69  E-value: 2.81e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172335010  12 QQIVELLVHAGSARSSALMALQQAKAGDFQQAEMLMEEARQETRAAHAIQTKLIGLDEGCGKLPINLITVHAQDHLMNAM 91
Cdd:pfam02255   1 EIAMEIILHAGNARSLAMEALKAAKEGDFEEAEELLKEADEELLEAHKAQTELIQKEAGGEKVEVSLLLVHAQDHLMTAM 80

                          90
                  ....*....|....
gi 1172335010  92 VIQDLASNMIDLYQ 105
Cdd:pfam02255  81 TEKDLAKELIELYK 94
PTS_IIA_lac cd00215
PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial ...
 11-106 2.00e-29

PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.


Pssm-ID: 238133  Cd Length: 97  Bit Score: 101.51  E-value: 2.00e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172335010  11 EQQIVELLVHAGSARSSALMALQQAKAGDFQQAEMLMEEARQETRAAHAIQTKLIGLDEGCGKLPINLITVHAQDHLMNA 90
Cdd:cd00215     2 ELISFQIILHAGNARSKALEALKAAKEGDFAEAEELLEEANDSLNEAHHAQTKLLQQEASGEKVEVSLLLVHAQDHLMTT 81

                          90
                  ....*....|....*.
gi 1172335010  91 MVIQDLASNMIDLYQR 106
Cdd:cd00215    82 ITLKDLAKEMIELYKK 97
EIIA-LAC TIGR00823
phosphotransferase system enzyme II, lactose-specific, factor III; The PTS Lactose-N,N? ...
 8-106 1.37e-28

phosphotransferase system enzyme II, lactose-specific, factor III; The PTS Lactose-N,N?-Diacetylchitobiose-b-glucoside (Lac) Family (TC 4.A.3)Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as the E. coli N,N?-diacetylchitobiose (Chb)permease which can transport aromatic b-glucosides and cellobiose as well as the chitin disaccharide, Chb, but only Chb induces expression of the chboperon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 129903  Cd Length: 99  Bit Score: 99.43  E-value: 1.37e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172335010   8 QDFEQQIVELLVHAGSARSSALMALQQAKAGDFQQAEMLMEEARQETRAAHAIQTKLIGLDEGCGKLPINLITVHAQDHL 87
Cdd:TIGR00823   1 EEMELLGFEIVAYAGDARSKALEALKAAKAGDFAKARALVEQAGMCINEAHLAQTSLLAQEAGGGKMEVSLTMVHGQDHL 80

                          90
                  ....*....|....*....
gi 1172335010  88 MNAMVIQDLASNMIDLYQR 106
Cdd:TIGR00823  81 MTTILLKDLAAELIELYKR 99
PRK10454 PRK10454
PTS N,N'-diacetylchitobiose transporter subunit IIA;
6-107 2.25e-27

PTS N,N'-diacetylchitobiose transporter subunit IIA;


Pssm-ID: 182472  Cd Length: 115  Bit Score: 96.88  E-value: 2.25e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172335010   6 EQQDFEQQIVELLVHAGSARSSALMALQQAKAGDFQQAEMLMEEARQETRAAHAIQTKLIGLDEGCGKLPINLITVHAQD 85
Cdd:PRK10454   13 EAEELEEVVMGLIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSRMALNEAHLVQTKLIEGDQGEGKMKVSLVLVHAQD 92

                          90       100
                  ....*....|....*....|..
gi 1172335010  86 HLMNAMVIQDLASNMIDLYQRL 107
Cdd:PRK10454   93 HLMTSMLARELITELIELHEKL 114
celC PRK09591
PTS cellobiose transporter subunit IIA;
16-107 4.75e-14

PTS cellobiose transporter subunit IIA;


Pssm-ID: 181975  Cd Length: 104  Bit Score: 62.51  E-value: 4.75e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172335010  16 ELLVHAGSARSSALMALQQAKAGDFQQAEMLMEEARQETRAAHAIQTKLIGLDEGCGKLPINLITVHAQDHLMNAMVIQD 95
Cdd:PRK09591   12 EIILHSGNARTEVHEAFAAMREGNFDLAEQKLNQSNEELLEAHHAQTKLLQEYASGTEIKIEIIMVHAQDHLMTTMTLRE 91

                          90
                  ....*....|..
gi 1172335010  96 LASNMIDLYQRL 107
Cdd:PRK09591   92 VAKEMLALYKKV 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH