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Conserved domains on  [gi|1172467620|ref|WP_080841770|]
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protein-disulfide reductase DsbD [Klebsiella quasipneumoniae]

Protein Classification

protein-disulfide reductase DsbD( domain architecture ID 11478463)

protein-disulfide reductase DsbD facilitates the formation of correct disulfide bonds in some periplasmic proteins and is required for the assembly of the periplasmic c-type cytochromes

EC:  1.8.1.8
SCOP:  4000237

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
dipZ PRK00293
thiol:disulfide interchange protein precursor; Provisional
4-598 0e+00

thiol:disulfide interchange protein precursor; Provisional


:

Pssm-ID: 234717 [Multi-domain]  Cd Length: 571  Bit Score: 952.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620   4 RIITLILLLCSTSAT--AGLFDAPGRSNFVPADQAFAFDFQQQQHNVNLSWQIKDGYYLYRQQFTFRAAGATIDEPALPA 81
Cdd:PRK00293    3 RLLTLILLLCSTLAFasAGLFDAPGRSDFLPVDQAFAFDFQQQGDQLNLRWQIADGYYLYRKQIKITPEPADLGEPQLPA 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620  82 GEWHQDEFYGKSEIFRQRLTVPVTVKQAEKDATLTVTWQGCADAGFCYPPETKVIPLSAVLAASADGQATAIEPMPSTSS 161
Cdd:PRK00293   83 GEPHEDEFFGEVEVYRDRLDLPVPLNQAAAGATLTVTYQGCADAGFCYPPETRTVPLSAVAANSAPAPAPAPAGQATASL 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 162 RPafnpplpveprpapelatspapaavppadtparLPFTALWALLIGIGIAFTPCVLPMYPLISGIVLGGKQRLSTARAL 241
Cdd:PRK00293  163 AS---------------------------------LPWSLLWFFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARAL 209
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 242 LLAFIYVQGMALTYTALGLVVAAAGLQFQAALQHPYVLAGLSVVFILLALSMFGLFTLQLPSSLQTRLALLSNKRQGGSP 321
Cdd:PRK00293  210 LLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQHPYVLIGLSILFVLLALSMFGLFTLQLPSSLQTRLTLLSNRQQGGSL 289
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 322 GGVFAMGAIAGLICSPCTTAPLSAILLYIAQSGNLWLGGGTLYLYALGMGLPLILVTVFGNRLLPKSGPWMSHVKTAFGF 401
Cdd:PRK00293  290 GGVFVMGAISGLICSPCTTAPLSGALLYIAQSGDLLLGGLTLYLLALGMGLPLILITTFGNKLLPKSGPWMNQVKTAFGF 369
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 402 VILALPVFLLERIVGDPWGLRLWSMLGVAFFSWAFITSLGATRPWMR-LVQIILLAVALVSARPLQDWAFG--APAVEQQ 478
Cdd:PRK00293  370 VLLALPVFLLERVLPGVWGLRLWSLLGVAFFGWAFIQSLKAKRGWMRlLGQILLLAALLASVRPLQDWAFGgaAAGAQTQ 449
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 479 AHLTFTRVNSVAELNQALAQAK--GQPVMLDLYADWCVACKEFEKYTFSSPDVQQALKGTVLLQIDVTKNSPQDVALLKH 556
Cdd:PRK00293  450 AHLNFQRIKTVAELDQALAEAKgkGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKH 529
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|..
gi 1172467620 557 LQVLGLPTILFFNAEGQEQPERRVTGFMDAAAFSAHLRDWQA 598
Cdd:PRK00293  530 YNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQP 571
 
Name Accession Description Interval E-value
dipZ PRK00293
thiol:disulfide interchange protein precursor; Provisional
4-598 0e+00

thiol:disulfide interchange protein precursor; Provisional


Pssm-ID: 234717 [Multi-domain]  Cd Length: 571  Bit Score: 952.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620   4 RIITLILLLCSTSAT--AGLFDAPGRSNFVPADQAFAFDFQQQQHNVNLSWQIKDGYYLYRQQFTFRAAGATIDEPALPA 81
Cdd:PRK00293    3 RLLTLILLLCSTLAFasAGLFDAPGRSDFLPVDQAFAFDFQQQGDQLNLRWQIADGYYLYRKQIKITPEPADLGEPQLPA 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620  82 GEWHQDEFYGKSEIFRQRLTVPVTVKQAEKDATLTVTWQGCADAGFCYPPETKVIPLSAVLAASADGQATAIEPMPSTSS 161
Cdd:PRK00293   83 GEPHEDEFFGEVEVYRDRLDLPVPLNQAAAGATLTVTYQGCADAGFCYPPETRTVPLSAVAANSAPAPAPAPAGQATASL 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 162 RPafnpplpveprpapelatspapaavppadtparLPFTALWALLIGIGIAFTPCVLPMYPLISGIVLGGKQRLSTARAL 241
Cdd:PRK00293  163 AS---------------------------------LPWSLLWFFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARAL 209
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 242 LLAFIYVQGMALTYTALGLVVAAAGLQFQAALQHPYVLAGLSVVFILLALSMFGLFTLQLPSSLQTRLALLSNKRQGGSP 321
Cdd:PRK00293  210 LLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQHPYVLIGLSILFVLLALSMFGLFTLQLPSSLQTRLTLLSNRQQGGSL 289
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 322 GGVFAMGAIAGLICSPCTTAPLSAILLYIAQSGNLWLGGGTLYLYALGMGLPLILVTVFGNRLLPKSGPWMSHVKTAFGF 401
Cdd:PRK00293  290 GGVFVMGAISGLICSPCTTAPLSGALLYIAQSGDLLLGGLTLYLLALGMGLPLILITTFGNKLLPKSGPWMNQVKTAFGF 369
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 402 VILALPVFLLERIVGDPWGLRLWSMLGVAFFSWAFITSLGATRPWMR-LVQIILLAVALVSARPLQDWAFG--APAVEQQ 478
Cdd:PRK00293  370 VLLALPVFLLERVLPGVWGLRLWSLLGVAFFGWAFIQSLKAKRGWMRlLGQILLLAALLASVRPLQDWAFGgaAAGAQTQ 449
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 479 AHLTFTRVNSVAELNQALAQAK--GQPVMLDLYADWCVACKEFEKYTFSSPDVQQALKGTVLLQIDVTKNSPQDVALLKH 556
Cdd:PRK00293  450 AHLNFQRIKTVAELDQALAEAKgkGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKH 529
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|..
gi 1172467620 557 LQVLGLPTILFFNAEGQEQPERRVTGFMDAAAFSAHLRDWQA 598
Cdd:PRK00293  530 YNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQP 571
DsbD COG4232
Thiol:disulfide interchange protein DsbD [Posttranslational modification, protein turnover, ...
198-598 1.06e-143

Thiol:disulfide interchange protein DsbD [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443376 [Multi-domain]  Cd Length: 416  Bit Score: 422.29  E-value: 1.06e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 198 PFTALWALLIGIGIAFTPCVLPMYPLISGIVLGGKQRlSTARALLLAFIYVQGMALTYTALGLVVAAAG--LQFQAALQH 275
Cdd:COG4232     3 ALILLLAFLGGLLLNLTPCVLPMLPIKSSIIVGQGGK-SRRRAFLLSLAYVLGMALTYTLLGLLAALLGgaVGWGFQLQS 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 276 PYVLAGLSVVFILLALSMFGLFTLQLPSSLQTRLALLSNkrqGGSPGGVFAMGAIAGLICSPCTTAPLSAILLYIAQSGN 355
Cdd:COG4232    82 PWVLGALALLFVLLALSMFGLFELQLPSSLQNRLAALSN---GGGLLGAFFMGVLAALVATPCTAPFLGGALGYALQTGD 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 356 LWLGGGTLYLYALGMGLPLILVTVFGN--RLLPKSGPWMSHVKTAFGFVILALPVFLLERIVG----DPWGLRLWSMLGV 429
Cdd:COG4232   159 ALLGLLALFALGLGMALPLLLLGLFPGllKLLPKPGAWMETVKQVFGFLLLATAIWLLSVLLPqaglDAVALLLWALLLL 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 430 AFFSW---AFITSLGATRPW----------MRLVQIILLAVALVSARPLQDWAFGAPAVEQQAHLTFtrvnsVAELNQAL 496
Cdd:COG4232   239 ALALWllgALRLPHDSSGRRlsvrkglgllLLLAGLALLLGALSGADPLQPLAAGAAAAAAAAGLAW-----QADLEAAL 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 497 AQAK--GQPVMLDLYADWCVACKEFEKYTFSSPDVQQALK-GTVLLQIDVTKNSPQDVALLKHLQVLGLPTILFFNAEGQ 573
Cdd:COG4232   314 AEARaeGKPVFVDFTADWCVTCKENERTVFSDPEVQAALAdDVVLLKADVTDNDPEITALLKRFGRFGVPTYVFYDPDGE 393
                         410       420
                  ....*....|....*....|....*
gi 1172467620 574 EQPerRVTGFMDAAAFSAHLRDWQA 598
Cdd:COG4232   394 ELP--RLGFMLTADEFLAALEKAKG 416
DsbDgamma cd02953
DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein ...
489-594 1.18e-42

DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.


Pssm-ID: 239251 [Multi-domain]  Cd Length: 104  Bit Score: 148.52  E-value: 1.18e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 489 VAELNQALAQakGQPVMLDLYADWCVACKEFEKYTFSSPDVQQALK-GTVLLQIDVTKNSPQDVALLKHLQVLGLPTILF 567
Cdd:cd02953     1 EAALAQALAQ--GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKkDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78
                          90       100
                  ....*....|....*....|....*..
gi 1172467620 568 FNAeGQEQPERRVTGFMDAAAFSAHLR 594
Cdd:cd02953    79 YGP-GGEPEPLRLPGFLTADEFLEALE 104
DsbC pfam11412
Disulphide bond corrector protein DsbC; This entry represents the N-terminal domain of DsbD, a ...
30-138 2.85e-38

Disulphide bond corrector protein DsbC; This entry represents the N-terminal domain of DsbD, a transmembrane electron transporter. DsbD binds to a DsbC dimer and selectively activates it using electrons from the cytoplasm. The N-terminal domain of DsbD (DsbDN) is capable of forming disulfides with oxidized DsbC, DsbE, or DsbG as well as with reduced DsbD.


Pssm-ID: 463273 [Multi-domain]  Cd Length: 115  Bit Score: 137.09  E-value: 2.85e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620  30 FVPADQAFAFDFQQQQHNVNLSWQIKDGYYLYRQQFTFR---AAGATIDEPALPAGEWHQDEFYGKSEIFRQRLTVPVTV 106
Cdd:pfam11412   3 LLPPDEAFKFSAAGDGDTLGLRWEIAPGYYLYWDKPGFEwtpPDGVTLGELQLPAPERKPDEFFGEVEVYEGEVTLPLPL 82
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1172467620 107 KQA-EKDATLTVTWQGCADAGFCYPPETKVIPL 138
Cdd:pfam11412  83 AAAaGATLKLEVTYQGCAEAGICYPPETKLFLL 115
thioredoxin TIGR01068
thioredoxin; Several proteins, such as protein disulfide isomerase, have two or more copies of ...
488-589 3.06e-07

thioredoxin; Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport]


Pssm-ID: 200072 [Multi-domain]  Cd Length: 101  Bit Score: 48.82  E-value: 3.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 488 SVAELNQALAQAKGqPVMLDLYADWCVACK----EFEKytfSSPDVQQALKgtvLLQIDVTKNspQDVAllKHLQVLGLP 563
Cdd:TIGR01068   2 TDANFDETIASSDK-PVLVDFWAPWCGPCKmiapILEE---LAKEYEGKVK---FVKLNVDEN--PDIA--AKYGIRSIP 70
                          90       100
                  ....*....|....*....|....*.
gi 1172467620 564 TILFFnaEGQEQPERRVtGFMDAAAF 589
Cdd:TIGR01068  71 TLLLF--KNGKEVDRSV-GALPKAAL 93
 
Name Accession Description Interval E-value
dipZ PRK00293
thiol:disulfide interchange protein precursor; Provisional
4-598 0e+00

thiol:disulfide interchange protein precursor; Provisional


Pssm-ID: 234717 [Multi-domain]  Cd Length: 571  Bit Score: 952.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620   4 RIITLILLLCSTSAT--AGLFDAPGRSNFVPADQAFAFDFQQQQHNVNLSWQIKDGYYLYRQQFTFRAAGATIDEPALPA 81
Cdd:PRK00293    3 RLLTLILLLCSTLAFasAGLFDAPGRSDFLPVDQAFAFDFQQQGDQLNLRWQIADGYYLYRKQIKITPEPADLGEPQLPA 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620  82 GEWHQDEFYGKSEIFRQRLTVPVTVKQAEKDATLTVTWQGCADAGFCYPPETKVIPLSAVLAASADGQATAIEPMPSTSS 161
Cdd:PRK00293   83 GEPHEDEFFGEVEVYRDRLDLPVPLNQAAAGATLTVTYQGCADAGFCYPPETRTVPLSAVAANSAPAPAPAPAGQATASL 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 162 RPafnpplpveprpapelatspapaavppadtparLPFTALWALLIGIGIAFTPCVLPMYPLISGIVLGGKQRLSTARAL 241
Cdd:PRK00293  163 AS---------------------------------LPWSLLWFFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARAL 209
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 242 LLAFIYVQGMALTYTALGLVVAAAGLQFQAALQHPYVLAGLSVVFILLALSMFGLFTLQLPSSLQTRLALLSNKRQGGSP 321
Cdd:PRK00293  210 LLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQHPYVLIGLSILFVLLALSMFGLFTLQLPSSLQTRLTLLSNRQQGGSL 289
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 322 GGVFAMGAIAGLICSPCTTAPLSAILLYIAQSGNLWLGGGTLYLYALGMGLPLILVTVFGNRLLPKSGPWMSHVKTAFGF 401
Cdd:PRK00293  290 GGVFVMGAISGLICSPCTTAPLSGALLYIAQSGDLLLGGLTLYLLALGMGLPLILITTFGNKLLPKSGPWMNQVKTAFGF 369
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 402 VILALPVFLLERIVGDPWGLRLWSMLGVAFFSWAFITSLGATRPWMR-LVQIILLAVALVSARPLQDWAFG--APAVEQQ 478
Cdd:PRK00293  370 VLLALPVFLLERVLPGVWGLRLWSLLGVAFFGWAFIQSLKAKRGWMRlLGQILLLAALLASVRPLQDWAFGgaAAGAQTQ 449
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 479 AHLTFTRVNSVAELNQALAQAK--GQPVMLDLYADWCVACKEFEKYTFSSPDVQQALKGTVLLQIDVTKNSPQDVALLKH 556
Cdd:PRK00293  450 AHLNFQRIKTVAELDQALAEAKgkGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKH 529
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|..
gi 1172467620 557 LQVLGLPTILFFNAEGQEQPERRVTGFMDAAAFSAHLRDWQA 598
Cdd:PRK00293  530 YNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQP 571
DsbD COG4232
Thiol:disulfide interchange protein DsbD [Posttranslational modification, protein turnover, ...
198-598 1.06e-143

Thiol:disulfide interchange protein DsbD [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443376 [Multi-domain]  Cd Length: 416  Bit Score: 422.29  E-value: 1.06e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 198 PFTALWALLIGIGIAFTPCVLPMYPLISGIVLGGKQRlSTARALLLAFIYVQGMALTYTALGLVVAAAG--LQFQAALQH 275
Cdd:COG4232     3 ALILLLAFLGGLLLNLTPCVLPMLPIKSSIIVGQGGK-SRRRAFLLSLAYVLGMALTYTLLGLLAALLGgaVGWGFQLQS 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 276 PYVLAGLSVVFILLALSMFGLFTLQLPSSLQTRLALLSNkrqGGSPGGVFAMGAIAGLICSPCTTAPLSAILLYIAQSGN 355
Cdd:COG4232    82 PWVLGALALLFVLLALSMFGLFELQLPSSLQNRLAALSN---GGGLLGAFFMGVLAALVATPCTAPFLGGALGYALQTGD 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 356 LWLGGGTLYLYALGMGLPLILVTVFGN--RLLPKSGPWMSHVKTAFGFVILALPVFLLERIVG----DPWGLRLWSMLGV 429
Cdd:COG4232   159 ALLGLLALFALGLGMALPLLLLGLFPGllKLLPKPGAWMETVKQVFGFLLLATAIWLLSVLLPqaglDAVALLLWALLLL 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 430 AFFSW---AFITSLGATRPW----------MRLVQIILLAVALVSARPLQDWAFGAPAVEQQAHLTFtrvnsVAELNQAL 496
Cdd:COG4232   239 ALALWllgALRLPHDSSGRRlsvrkglgllLLLAGLALLLGALSGADPLQPLAAGAAAAAAAAGLAW-----QADLEAAL 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 497 AQAK--GQPVMLDLYADWCVACKEFEKYTFSSPDVQQALK-GTVLLQIDVTKNSPQDVALLKHLQVLGLPTILFFNAEGQ 573
Cdd:COG4232   314 AEARaeGKPVFVDFTADWCVTCKENERTVFSDPEVQAALAdDVVLLKADVTDNDPEITALLKRFGRFGVPTYVFYDPDGE 393
                         410       420
                  ....*....|....*....|....*
gi 1172467620 574 EQPerRVTGFMDAAAFSAHLRDWQA 598
Cdd:COG4232   394 ELP--RLGFMLTADEFLAALEKAKG 416
DsbDgamma cd02953
DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein ...
489-594 1.18e-42

DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.


Pssm-ID: 239251 [Multi-domain]  Cd Length: 104  Bit Score: 148.52  E-value: 1.18e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 489 VAELNQALAQakGQPVMLDLYADWCVACKEFEKYTFSSPDVQQALK-GTVLLQIDVTKNSPQDVALLKHLQVLGLPTILF 567
Cdd:cd02953     1 EAALAQALAQ--GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKkDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78
                          90       100
                  ....*....|....*....|....*..
gi 1172467620 568 FNAeGQEQPERRVTGFMDAAAFSAHLR 594
Cdd:cd02953    79 YGP-GGEPEPLRLPGFLTADEFLEALE 104
DsbC pfam11412
Disulphide bond corrector protein DsbC; This entry represents the N-terminal domain of DsbD, a ...
30-138 2.85e-38

Disulphide bond corrector protein DsbC; This entry represents the N-terminal domain of DsbD, a transmembrane electron transporter. DsbD binds to a DsbC dimer and selectively activates it using electrons from the cytoplasm. The N-terminal domain of DsbD (DsbDN) is capable of forming disulfides with oxidized DsbC, DsbE, or DsbG as well as with reduced DsbD.


Pssm-ID: 463273 [Multi-domain]  Cd Length: 115  Bit Score: 137.09  E-value: 2.85e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620  30 FVPADQAFAFDFQQQQHNVNLSWQIKDGYYLYRQQFTFR---AAGATIDEPALPAGEWHQDEFYGKSEIFRQRLTVPVTV 106
Cdd:pfam11412   3 LLPPDEAFKFSAAGDGDTLGLRWEIAPGYYLYWDKPGFEwtpPDGVTLGELQLPAPERKPDEFFGEVEVYEGEVTLPLPL 82
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1172467620 107 KQA-EKDATLTVTWQGCADAGFCYPPETKVIPL 138
Cdd:pfam11412  83 AAAaGATLKLEVTYQGCAEAGICYPPETKLFLL 115
CcdA COG0785
Cytochrome c biogenesis protein CcdA [Energy production and conversion, Posttranslational ...
200-397 3.56e-29

Cytochrome c biogenesis protein CcdA [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440548 [Multi-domain]  Cd Length: 193  Bit Score: 114.17  E-value: 3.56e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 200 TALWALLIGIGIAFTPCVLPMYPLISGIVLGGkQRLSTARALLLAFIYVQGMALTYTALGLVVAAAGLQFQAALQHPYVL 279
Cdd:COG0785     4 SLLLAFLAGLLSFLSPCVLPLLPGYLSYLTGL-SRASRRRALLRALLFVLGFSLVFVLLGALASALGSLLGQYQDLLRIV 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 280 AGlsVVFILLALSMFGLFTLQLpssLQTRLALlsNKRQGGSPGGVFAMGAIAGLICSPCTTAPLSAILLYIAQSGNLWLG 359
Cdd:COG0785    83 AG--VLLILFGLVLLGLLKIPF---LQREARI--NLRRKAGLLGAFLLGLAFGLGWTPCIGPILGAILALAATSGSVLRG 155
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1172467620 360 GGTLYLYALGMGLPLILVTVFGNRLLPKSGPWMSHVKT 397
Cdd:COG0785   156 ALLLLAYALGLGLPFLLLALFAGRLLGRLRRLRRHLRW 193
DsbD pfam02683
Cytochrome C biogenesis protein transmembrane region; This family consists of the ...
204-411 4.61e-20

Cytochrome C biogenesis protein transmembrane region; This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.


Pssm-ID: 280792 [Multi-domain]  Cd Length: 213  Bit Score: 89.00  E-value: 4.61e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 204 ALLIGIGIAFTPCVLPMYPL----ISGIVLGG-KQRLSTARALLLAFIYVQGMALTYTALGLVVAAAGLQFQAALQHPYV 278
Cdd:pfam02683   1 AFLAGLLSFLSPCILPLIPAylsyISGVSVGDrKQGKKRVRVLLKSLLFVLGLSLVFVLLGLSAAFLGQLFGDFKGWVRI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 279 LAGLSVvfILLALSMFGLFtlQLPSSLQTRLALLSNKRQGGSPGGVFAMGAIAGLICSPCTTAPLSAILLYIAQSGNLWL 358
Cdd:pfam02683  81 IAGLIV--ILFGLHFLGVF--RIPFLYKLRLVHKTKKKISLPVLGAFLLGMTFALGWTPCIGPILASVLALAASTGSLLL 156
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1172467620 359 GGGTLYLYALGMGLPLILVTVFGNRLLPKS---GPWMSHVKTAFGFVILALPVFLL 411
Cdd:pfam02683 157 GAGLMVVYVLGLAAPFLLASLFFGSLLLRLkwlRKNSHWVKIAGGVLLILFGVLLL 212
SoxW COG2143
Thioredoxin-related protein SoxW [Posttranslational modification, protein turnover, chaperones] ...
447-594 8.96e-19

Thioredoxin-related protein SoxW [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441746 [Multi-domain]  Cd Length: 146  Bit Score: 83.03  E-value: 8.96e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 447 MRLVQIILLAVALVSarplqdwaFGAPAVEQQAHLTFtrvnsvaELNQALAQAKGQPVMLDLYADWCVACKEFEKYTFSS 526
Cdd:COG2143     1 MKKLLLLLLLLLLLA--------AAAAAQEISFLLDL-------EEDLALAKAEGKPILLFFESDWCPYCKKLHKEVFSD 65
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1172467620 527 PDVQQALKGT-VLLQIDVTKNSP-QDV--------ALLKHLQVLGLPTILFFNAEGQEQpeRRVTGFMDAAAFSAHLR 594
Cdd:COG2143    66 PEVAAYLKENfVVVQLDAEGDKEvTDFdgetltekELARKYGVRGTPTLVFFDAEGKEI--ARIPGYLKPETFLALLK 141
Thioredoxin_7 pfam13899
Thioredoxin-like; Thioredoxins are small enzymes that participate in redox reactions, via the ...
492-570 1.80e-14

Thioredoxin-like; Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond.


Pssm-ID: 433567 [Multi-domain]  Cd Length: 84  Bit Score: 68.93  E-value: 1.80e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 492 LNQALAQAK--GQPVMLDLYADWCVACKEFEKYTFSSPDVQQALKGT-VLLQIDVTKNSPQDVALLKHLQVlglPTILFF 568
Cdd:pfam13899   6 LEEALAAAAerGKPVLVDFGADWCFTCQVLERDFLSHEEVKAALAKNfVLLRLDWTSRDANITRAFDGQGV---PHIAFL 82

                  ..
gi 1172467620 569 NA 570
Cdd:pfam13899  83 DP 84
Thioredoxin_2 pfam13098
Thioredoxin-like domain;
499-593 6.36e-12

Thioredoxin-like domain;


Pssm-ID: 379034 [Multi-domain]  Cd Length: 103  Bit Score: 62.06  E-value: 6.36e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 499 AKGQPVMLDLYADWCVACKEFEKYTFSSPDVQQALKG---TVLLQIDVTKNSPQD-------VALLKHLQVLGLPTILFF 568
Cdd:pfam13098   2 GNGKPVLVVFTDPDCPYCKKLKKELLEDPDVTVYLGPnfvFIAVNIWCAKEVAKAftdilenKELGRKYGVRGTPTIVFF 81
                          90       100
                  ....*....|....*....|....*
gi 1172467620 569 NAEGQeqpERRVTGFMDAAAFSAHL 593
Cdd:pfam13098  82 DGKGE---LLRLPGYVPAEEFLALL 103
CnoX COG3118
Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family ...
490-595 8.24e-12

Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442352 [Multi-domain]  Cd Length: 105  Bit Score: 61.76  E-value: 8.24e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 490 AELNQALAQAKGqPVMLDLYADWCVACKEFekytfsSP---DVQQALKGTV-LLQIDVTKNspQDVAllKHLQVLGLPTI 565
Cdd:COG3118     8 ENFEEEVLESDK-PVLVDFWAPWCGPCKML------APvleELAAEYGGKVkFVKVDVDEN--PELA--AQFGVRSIPTL 76
                          90       100       110
                  ....*....|....*....|....*....|
gi 1172467620 566 LFFnAEGQEQPerRVTGFMDAAAFSAHLRD 595
Cdd:COG3118    77 LLF-KDGQPVD--RFVGALPKEQLREFLDK 103
TRX_family cd02947
TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a ...
490-593 9.37e-11

TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.


Pssm-ID: 239245 [Multi-domain]  Cd Length: 93  Bit Score: 58.72  E-value: 9.37e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 490 AELNQALAQAKgqPVMLDLYADWCVACKEFEkytfssPDVQQALK---GTVLLQIDVTKNspQDVAllKHLQVLGLPTIL 566
Cdd:cd02947     1 EEFEELIKSAK--PVVVDFWAPWCGPCKAIA------PVLEELAEeypKVKFVKVDVDEN--PELA--EEYGVRSIPTFL 68
                          90       100
                  ....*....|....*....|....*..
gi 1172467620 567 FFNaEGQEQpeRRVTGFMDAAAFSAHL 593
Cdd:cd02947    69 FFK-NGKEV--DRVVGADPKEELEEFL 92
TrxA COG0526
Thiol-disulfide isomerase or thioredoxin [Posttranslational modification, protein turnover, ...
495-595 1.64e-10

Thiol-disulfide isomerase or thioredoxin [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440292 [Multi-domain]  Cd Length: 139  Bit Score: 59.32  E-value: 1.64e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 495 ALAQAKGQPVMLDLYADWCVACKEFEKYTFsspDVQQALKGTVLLQIDVTKNSPQ------------------DVALLKH 556
Cdd:COG0526    22 SLADLKGKPVLVNFWATWCPPCRAEMPVLK---ELAEEYGGVVFVGVDVDENPEAvkaflkelglpypvlldpDGELAKA 98
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1172467620 557 LQVLGLPTILFFNAEGQEQpeRRVTGFMDAAAFSAHLRD 595
Cdd:COG0526    99 YGVRGIPTTVLIDKDGKIV--ARHVGPLSPEELEEALEK 135
DsbD_2 pfam13386
Cytochrome C biogenesis protein transmembrane region;
226-404 8.95e-09

Cytochrome C biogenesis protein transmembrane region;


Pssm-ID: 463866  Cd Length: 199  Bit Score: 55.70  E-value: 8.95e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 226 GIVLGGKQRLSTARALLLAfiYVQGMALTYTALGLVVAAAGLQFQAALQHPYVLAGLSVVFILLALSM-FGLFTLQLPSS 304
Cdd:pfam13386  19 GIVLALSLALPSRRFALLL--YNLGRILSYTLLGALAGLLGSVLSLAGQLAGLRGVLGVLLGLLLLLLgLYLLGLPGLLK 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 305 LQTRLALLSN-----KRQGGSPGGVFAMGAIAGLIcsPCttAPLSAILLYIAQSGNLWLGGGTLYLYALGMGLPLILVTV 379
Cdd:pfam13386  97 LERLGKGLWRllsplAKRLKSPGGAFLLGLLWGLL--PC--GLVYSALLYAAATGSALEGALVMLAFGLGTLPALLLFGL 172
                         170       180
                  ....*....|....*....|....*
gi 1172467620 380 FGNRLLPKSGPWMshVKTAFGFVIL 404
Cdd:pfam13386 173 LAGFLSKKLRKRL--QRLAGVLLIL 195
Thioredoxin pfam00085
Thioredoxin; Thioredoxins are small enzymes that participate in redox reactions, via the ...
488-595 9.34e-08

Thioredoxin; Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise.


Pssm-ID: 395038 [Multi-domain]  Cd Length: 103  Bit Score: 50.31  E-value: 9.34e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 488 SVAELNQALAQAKgQPVMLDLYADWCVACK----EFEKYTfsspdvqQALKGTV-LLQIDVTKNSpqDVAllKHLQVLGL 562
Cdd:pfam00085   6 TDANFDEVVQKSS-KPVLVDFYAPWCGPCKmlapEYEELA-------QEYKGNVvFAKVDVDENP--DLA--SKYGVRGY 73
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1172467620 563 PTILFFNAegqEQPERRVTGFMDAAAFSAHLRD 595
Cdd:pfam00085  74 PTLIFFKN---GQPVDDYVGARPKDALAAFLKA 103
TxlA cd02950
TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium ...
497-575 1.12e-07

TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.


Pssm-ID: 239248 [Multi-domain]  Cd Length: 142  Bit Score: 51.18  E-value: 1.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 497 AQAKGQPVMLDLYADWCVACKEFekytfsSPDVQQaLKGT-------VLLQIDVTKNSPqdvaLLKHLQVLGLPTILFFN 569
Cdd:cd02950    16 ALSNGKPTLVEFYADWCTVCQEM------APDVAK-LKQKygdqvnfVMLNVDNPKWLP----EIDRYRVDGIPHFVFLD 84

                  ....*.
gi 1172467620 570 AEGQEQ 575
Cdd:cd02950    85 REGNEE 90
thioredoxin TIGR01068
thioredoxin; Several proteins, such as protein disulfide isomerase, have two or more copies of ...
488-589 3.06e-07

thioredoxin; Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport]


Pssm-ID: 200072 [Multi-domain]  Cd Length: 101  Bit Score: 48.82  E-value: 3.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 488 SVAELNQALAQAKGqPVMLDLYADWCVACK----EFEKytfSSPDVQQALKgtvLLQIDVTKNspQDVAllKHLQVLGLP 563
Cdd:TIGR01068   2 TDANFDETIASSDK-PVLVDFWAPWCGPCKmiapILEE---LAKEYEGKVK---FVKLNVDEN--PDIA--AKYGIRSIP 70
                          90       100
                  ....*....|....*....|....*.
gi 1172467620 564 TILFFnaEGQEQPERRVtGFMDAAAF 589
Cdd:TIGR01068  71 TLLLF--KNGKEVDRSV-GALPKAAL 93
PDI_a_family cd02961
Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic ...
499-578 4.68e-07

Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29.


Pssm-ID: 239259 [Multi-domain]  Cd Length: 101  Bit Score: 48.38  E-value: 4.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 499 AKGQPVMLDLYADWCVACKEFE-------KYTFSSPDVqqalkgtVLLQIDVTKNSpqdvALLKHLQVLGLPTILFFNAe 571
Cdd:cd02961    13 KDSKDVLVEFYAPWCGHCKALApeyeklaKELKGDGKV-------VVAKVDCTANN----DLCSEYGVRGYPTIKLFPN- 80

                  ....*..
gi 1172467620 572 GQEQPER 578
Cdd:cd02961    81 GSKEPVK 87
TlpA_like_family cd02966
TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are ...
496-582 9.62e-07

TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.


Pssm-ID: 239264 [Multi-domain]  Cd Length: 116  Bit Score: 48.00  E-value: 9.62e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 496 LAQAKGQPVMLDLYADWCVACKEfekytfSSPDVQQ-----ALKGTVLLQIDVTKNSPQDV------------------- 551
Cdd:cd02966    14 LSDLKGKVVLVNFWASWCPPCRA------EMPELEAlakeyKDDGVEVVGVNVDDDDPAAVkaflkkygitfpvlldpdg 87
                          90       100       110
                  ....*....|....*....|....*....|.
gi 1172467620 552 ALLKHLQVLGLPTILFFNAEGQEQpeRRVTG 582
Cdd:cd02966    88 ELAKAYGVRGLPTTFLIDRDGRIR--ARHVG 116
PDI_a_PDI_a'_C cd02995
PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' ...
504-576 1.92e-06

PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones.


Pssm-ID: 239293 [Multi-domain]  Cd Length: 104  Bit Score: 46.78  E-value: 1.92e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 504 VMLDLYADWCVACKEFE-------KYTFSSPDVqqalkgtVLLQIDVTKNspqDVALlkHLQVLGLPTILFFNAEGQEQP 576
Cdd:cd02995    21 VLVEFYAPWCGHCKALApiyeelaEKLKGDDNV-------VIAKMDATAN---DVPS--EFVVDGFPTILFFPAGDKSNP 88
SoxW cd02951
SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, ...
487-595 5.28e-05

SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.


Pssm-ID: 239249 [Multi-domain]  Cd Length: 125  Bit Score: 43.07  E-value: 5.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 487 NSVAELNQALAQAKgQPVMLDLYADWCVACKEFEKYTFSSPDVQQALKGTVL-LQIDV-----------TKNSPQDVAll 554
Cdd:cd02951     1 DLYEDLAEAAADGK-KPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVvVYINIdgdkevtdfdgEALSEKELA-- 77
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1172467620 555 KHLQVLGLPTILFFNAEGQEQPErRVTGFMDAAAFSAHLRD 595
Cdd:cd02951    78 RKYRVRFTPTVIFLDPEGGKEIA-RLPGYLPPDEFLAYLEY 117
ER_PDI_fam TIGR01130
protein disulfide isomerase, eukaryotic; This model represents eukaryotic protein disulfide ...
504-576 4.94e-04

protein disulfide isomerase, eukaryotic; This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).


Pssm-ID: 273457 [Multi-domain]  Cd Length: 462  Bit Score: 42.74  E-value: 4.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 504 VMLDLYADWCVACKEF--------EKYTFSSPDVqqalkgtVLLQIDVTKNspqDVALLKhlqVLGLPTILFFNAEGQEQ 575
Cdd:TIGR01130 367 VLVEFYAPWCGHCKNLapiyeelaEKYKDAESDV-------VIAKMDATAN---DVPPFE---VEGFPTIKFVPAGKKSE 433

                  .
gi 1172467620 576 P 576
Cdd:TIGR01130 434 P 434
PTZ00443 PTZ00443
Thioredoxin domain-containing protein; Provisional
476-569 6.64e-04

Thioredoxin domain-containing protein; Provisional


Pssm-ID: 185622 [Multi-domain]  Cd Length: 224  Bit Score: 41.53  E-value: 6.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 476 EQQAHLTFTRVNSVAELNQALAQAKGQPVMLDLYADWCVACKEFEKytfSSPDVQQALKGTV-LLQIDVTKNspqdVALL 554
Cdd:PTZ00443   27 EDANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAP---AWERLAKALKGQVnVADLDATRA----LNLA 99
                          90
                  ....*....|....*
gi 1172467620 555 KHLQVLGLPTILFFN 569
Cdd:PTZ00443  100 KRFAIKGYPTLLLFD 114
PTZ00102 PTZ00102
disulphide isomerase; Provisional
496-585 6.67e-04

disulphide isomerase; Provisional


Pssm-ID: 240266 [Multi-domain]  Cd Length: 477  Bit Score: 42.43  E-value: 6.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 496 LAQAKGQPVMLDLYADWCVACKEFEkytfssPDVQQAlkGTVLLQID---VTK-NSPQDVALLKHLQVLGLPTILFFNAe 571
Cdd:PTZ00102  370 IVFKSDKDVLLEIYAPWCGHCKNLE------PVYNEL--GEKYKDNDsiiVAKmNGTANETPLEEFSWSAFPTILFVKA- 440
                          90
                  ....*....|....*....
gi 1172467620 572 GQEQP-----ERRVTGFMD 585
Cdd:PTZ00102  441 GERTPipyegERTVEGFKE 459
PDI_a_P5 cd03001
PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related ...
503-587 1.62e-03

PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.


Pssm-ID: 239299 [Multi-domain]  Cd Length: 103  Bit Score: 38.42  E-value: 1.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 503 PVMLDLYADWCVACKEFEkytfssPDVQQA---LKGTVLL-QIDVTKNSpqdvALLKHLQVLGLPTILFFNAeGQEQPE- 577
Cdd:cd03001    20 VWLVEFYAPWCGHCKNLA------PEWKKAakaLKGIVKVgAVDADVHQ----SLAQQYGVRGFPTIKVFGA-GKNSPQd 88
                          90
                  ....*....|....
gi 1172467620 578 ----RRVTGFMDAA 587
Cdd:cd03001    89 yqggRTAKAIVSAA 102
PTZ00102 PTZ00102
disulphide isomerase; Provisional
504-589 3.67e-03

disulphide isomerase; Provisional


Pssm-ID: 240266 [Multi-domain]  Cd Length: 477  Bit Score: 40.12  E-value: 3.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 504 VMLDLYADWCVACK----EFEK----YTFSSPDVqqalkgtVLLQIDVTKNspqdVALLKHLQVLGLPTILFFNAEGqeq 575
Cdd:PTZ00102   52 VLVKFYAPWCGHCKrlapEYKKaakmLKEKKSEI-------VLASVDATEE----MELAQEFGVRGYPTIKFFNKGN--- 117
                          90
                  ....*....|....
gi 1172467620 576 pERRVTGFMDAAAF 589
Cdd:PTZ00102  118 -PVNYSGGRTADGI 130
ERp19 cd02959
Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein ...
496-577 4.91e-03

Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.


Pssm-ID: 239257 [Multi-domain]  Cd Length: 117  Bit Score: 37.11  E-value: 4.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 496 LAQAKGQPVMLDLYADWCVACKEFEKYTFSSPDVQQALKGTVLLQIDvTKNSPQDvallKHLQVLG--LPTILFFNAEGQ 573
Cdd:cd02959    14 EAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLE-DDEEPKD----EEFSPDGgyIPRILFLDPSGD 88

                  ....
gi 1172467620 574 EQPE 577
Cdd:cd02959    89 VHPE 92
PDI_a_ERp38 cd02998
PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar ...
501-577 6.07e-03

PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica.


Pssm-ID: 239296 [Multi-domain]  Cd Length: 105  Bit Score: 36.84  E-value: 6.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1172467620 501 GQPVMLDLYADWCVACK----EFEKY--TFSS-PDVQQAlkgtvllQIDVTKNSpQDVAllKHLQVLGLPTILFFnAEGQ 573
Cdd:cd02998    18 KKDVLVEFYAPWCGHCKnlapEYEKLaaVFANeDDVVIA-------KVDADEAN-KDLA--KKYGVSGFPTLKFF-PKGS 86

                  ....
gi 1172467620 574 EQPE 577
Cdd:cd02998    87 TEPV 90
PDI_a_APS_reductase cd02993
PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS ...
502-568 7.00e-03

PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH -> C-terminal TRX domain -> N-terminal reductase domain -> APS. Plant-type APS reductase shows no homology to that of dissimilatory sulfate-reducing bacteria, which is an iron-sulfur flavoenzyme. Also included in the alignment is EYE2 from Chlamydomonas reinhardtii, a protein required for eyespot assembly.


Pssm-ID: 239291 [Multi-domain]  Cd Length: 109  Bit Score: 36.66  E-value: 7.00e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1172467620 502 QPVMLDLYADWCVACKEFEKytfSSPDVQQALKGTVLLQIDVTKNSPQDVALLKHLQVLGLPTILFF 568
Cdd:cd02993    22 QSTLVVLYAPWCPFCQAMEA---SYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFF 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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