|
Name |
Accession |
Description |
Interval |
E-value |
| BaeS |
COG0642 |
Signal transduction histidine kinase [Signal transduction mechanisms]; |
116-387 |
9.77e-20 |
|
Signal transduction histidine kinase [Signal transduction mechanisms];
Pssm-ID: 440407 [Multi-domain] Cd Length: 328 Bit Score: 89.20 E-value: 9.77e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 116 LLYLVFNDDADDYLDPYEDRLHLVTRLIGLALLLGCIAFGIWLVRHITRPLDRLRQRVAHLTPDQVDFVPDAPWQELREI 195
Cdd:COG0642 13 LLLLLLLLALLLLLLLLLLLALLLLLALLLLLLLLLLLLLLLALALLALLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 196 ELALLAGKHEVAAVFAREQEFSRFASHELRTPNMVIQGSAALLGKvtDLPAPAARAASRIRAASDEMALLTETFLLLGRK 275
Cdd:COG0642 93 LLLLLALLLLLEEANEAKSRFLANVSHELRTPLTAIRGYLELLLE--ELDEEQREYLETILRSADRLLRLINDLLDLSRL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 276 EAVERPPQW----VAPLIERELARLAPLLQRENLDIRLNLDEQSE-VQAPLSLLAIALGNLLKNALSYAE--GHIEIALQ 348
Cdd:COG0642 171 EAGKLELEPepvdLAELLEEVVELFRPLAEEKGIELELDLPDDLPtVRGDPDRLRQVLLNLLSNAIKYTPegGTVTVSVR 250
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 349 GQ----VLTISNP-----------------TAAAPDQILGYGCGLTIIQRICEKLGWQIE 387
Cdd:COG0642 251 REgdrvRISVEDTgpgippedlerifepffRTDPSRRGGGTGLGLAIVKRIVELHGGTIE 310
|
|
| PRK11100 |
PRK11100 |
sensory histidine kinase CreC; Provisional |
142-363 |
6.50e-11 |
|
sensory histidine kinase CreC; Provisional
Pssm-ID: 236846 [Multi-domain] Cd Length: 475 Bit Score: 63.71 E-value: 6.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 142 LIGLALLLGcIAFGIWLVRHITRpLDRLRQRVAHLTPDQVdfvPDAPWQELREIELAL------LAGKHEVaavfareQE 215
Cdd:PRK11100 191 LLGIALLIG-AGVVWWLNRSIRR-LTRYADAVTEGKPVPL---PKLGSSELRELAQALesmrvkLEGKAYV-------EQ 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 216 FSRFASHELRTPNMVIQGSAALL-------------GKVTDlpapaaraasriraASDEMALLTETFLLLGRKEA----V 278
Cdd:PRK11100 259 YVQTLTHELKSPLAAIRGAAELLqedpppedrarftGNILT--------------QSARLQQLIDRLLELARLEQrqelE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 279 ERPPQWVAPLIERELARLAPLLQRENLDIRLNLDEQSeVQAPLSLLAIALGNLLKNALSYA--EGHIEIALQGQ----VL 352
Cdd:PRK11100 325 VLEPVALAALLEELVEAREAQAAAKGITLRLRPDDAR-VLGDPFLLRQALGNLLDNAIDFSpeGGTITLSAEVDgeqvAL 403
|
250
....*....|.
gi 1175386712 353 TISNPTAAAPD 363
Cdd:PRK11100 404 SVEDQGPGIPD 414
|
|
| cztS_silS_copS |
TIGR01386 |
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain ... |
128-393 |
1.05e-09 |
|
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Pssm-ID: 273593 [Multi-domain] Cd Length: 457 Bit Score: 60.09 E-value: 1.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 128 YLDPYEDRLHLVTRLiglaLLLGCIAFGIWLVRHITRPLDRLRQRVAHLTPDQVDF---VPDAPwQELREIELALLAGKH 204
Cdd:TIGR01386 158 LLDALRKWLILIAVL----LVLLTALLGWWITRLGLEPLRRLSAVAARISPESLDQrldPSRAP-AELRELAQSFNAMLG 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 205 EVAAVFAREQEFSRFASHELRTP--NMVIQGSAALLGKVTdlPAPAARAASRIRAASDEMALLTETFLLLGRKEAVERPP 282
Cdd:TIGR01386 233 RLEDAFQRLSQFSADLAHELRTPltNLLGQTQVALSQPRT--GEEYREVLESNLEELERLSRMVSDMLFLARADNGQLAL 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 283 QWVAPLIERELARLAPLLQ--RENLDIRLNLDEQSEVQAPLSLLAIALGNLLKNALSYA--EGHIEIALQGQV----LTI 354
Cdd:TIGR01386 311 ERVRLDLAAELAKVAEYFEplAEERGVRIRVEGEGLVRGDPQMFRRAISNLLSNALRHTpdGGTITVRIERRSdevrVSV 390
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1175386712 355 SNPTAAAPDQIL-------------------GYGCGLTIIQRICEKLGWQIETRLEDG 393
Cdd:TIGR01386 391 SNPGPGIPPEHLsrlfdrfyrvdparsnsgeGTGLGLAIVRSIMEAHGGRASAESPDG 448
|
|
| HATPase_AgrC-ComD-like |
cd16935 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
299-397 |
4.96e-04 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) including Staphylococcus aureus AgrC which is an HK of the accessory gene regulator (agr) quorum sensing two-component regulatory system (TCS) AgrC-AgrA. The agr system plays a part in the transition from persistent to virulent phenotype. This family also includes Streptococcus pneumoniae ComD HK of the ComD-ComE TCS, involved in quorum sensing and genetic competence.
Pssm-ID: 340412 [Multi-domain] Cd Length: 134 Bit Score: 39.87 E-value: 4.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 299 LLQRENLDIRLNLDEQSEVQAPLSL--LAIALGNLLKNALSYAEG--------HIEIALQGQ--VLTISNPTAAAPDQIL 366
Cdd:cd16935 10 LELAREKGIEFTIEIDIPILLPISPldLCIIFGNLLDNAIEACAKidkenrfiHLKIRQKKGflIISIENSYEGELKKKN 89
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1175386712 367 G----------YGCGLTIIQRICEKLGWQIETRLEDGVFSA 397
Cdd:cd16935 90 GlflstkkdknHGIGLKSIREIVKKYNGNLSIEYENGIFTL 130
|
|
| HATPase_c |
pfam02518 |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ... |
324-399 |
1.36e-03 |
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 460579 [Multi-domain] Cd Length: 109 Bit Score: 38.12 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 324 LAIALGNLLKNALSYA--EGHIEIALQGQ---VLTISNPTAAAPDQIL----------------GYGCGLTIIQRICEKL 382
Cdd:pfam02518 6 LRQVLSNLLDNALKHAakAGEITVTLSEGgelTLTVEDNGIGIPPEDLprifepfstadkrgggGTGLGLSIVRKLVELL 85
|
90 100
....*....|....*....|
gi 1175386712 383 GWQIETRLEDG---VFSARL 399
Cdd:pfam02518 86 GGTITVESEPGggtTVTLTL 105
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| BaeS |
COG0642 |
Signal transduction histidine kinase [Signal transduction mechanisms]; |
116-387 |
9.77e-20 |
|
Signal transduction histidine kinase [Signal transduction mechanisms];
Pssm-ID: 440407 [Multi-domain] Cd Length: 328 Bit Score: 89.20 E-value: 9.77e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 116 LLYLVFNDDADDYLDPYEDRLHLVTRLIGLALLLGCIAFGIWLVRHITRPLDRLRQRVAHLTPDQVDFVPDAPWQELREI 195
Cdd:COG0642 13 LLLLLLLLALLLLLLLLLLLALLLLLALLLLLLLLLLLLLLLALALLALLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 196 ELALLAGKHEVAAVFAREQEFSRFASHELRTPNMVIQGSAALLGKvtDLPAPAARAASRIRAASDEMALLTETFLLLGRK 275
Cdd:COG0642 93 LLLLLALLLLLEEANEAKSRFLANVSHELRTPLTAIRGYLELLLE--ELDEEQREYLETILRSADRLLRLINDLLDLSRL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 276 EAVERPPQW----VAPLIERELARLAPLLQRENLDIRLNLDEQSE-VQAPLSLLAIALGNLLKNALSYAE--GHIEIALQ 348
Cdd:COG0642 171 EAGKLELEPepvdLAELLEEVVELFRPLAEEKGIELELDLPDDLPtVRGDPDRLRQVLLNLLSNAIKYTPegGTVTVSVR 250
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 349 GQ----VLTISNP-----------------TAAAPDQILGYGCGLTIIQRICEKLGWQIE 387
Cdd:COG0642 251 REgdrvRISVEDTgpgippedlerifepffRTDPSRRGGGTGLGLAIVKRIVELHGGTIE 310
|
|
| KdpD |
COG2205 |
K+-sensing histidine kinase KdpD [Signal transduction mechanisms]; |
215-387 |
8.27e-17 |
|
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
Pssm-ID: 441807 [Multi-domain] Cd Length: 239 Bit Score: 79.18 E-value: 8.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 215 EFSRFASHELRTPNMVIQGSAALLGKVTDLPAPAARAASRI-RAASDEMALLTETFLLLGRKEA----VERPPQWVAPLI 289
Cdd:COG2205 18 EFLANVSHELRTPLTSILGAAELLLDEEDLSPEERRELLEIiRESAERLLRLIEDLLDLSRLESgklsLELEPVDLAELL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 290 ERELARLAPLLQRENLDIRLNLDEQS-EVQAPLSLLAIALGNLLKNALSY--AEGHIEIALQGQ----VLTISN-----P 357
Cdd:COG2205 98 EEAVEELRPLAEEKGIRLELDLPPELpLVYADPELLEQVLANLLDNAIKYspPGGTITISARREgdgvRISVSDngpgiP 177
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1175386712 358 ------------TAAAPDQILGYGCGLTIIQRICEKLGWQIE 387
Cdd:COG2205 178 eeeleriferfyRGDNSRGEGGTGLGLAIVKRIVEAHGGTIW 219
|
|
| WalK |
COG5002 |
Sensor histidine kinase WalK [Signal transduction mechanisms]; |
116-387 |
2.66e-13 |
|
Sensor histidine kinase WalK [Signal transduction mechanisms];
Pssm-ID: 444026 [Multi-domain] Cd Length: 390 Bit Score: 70.74 E-value: 2.66e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 116 LLYLVFNDDADDYLDPYEDRLHLVTRLIGLALLLGCIAFGIWLVRHITRPLDRLRQRVAHLTPDQVDFVPDAPWQELREI 195
Cdd:COG5002 65 LLALLLLLLLLLLLLALALLLLALLLLLLLLLLLLALLILLLLLALLILLAALLLLLSELLLLLLLLGRLSLRLSALLLG 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 196 ELALLAGKHEVAAVFAREQEFSRF---ASHELRTPNMVIQGSA-ALLGKVTDLPAPAARAASRIRAASDEMALLTETFLL 271
Cdd:COG5002 145 LLLLAAVERDITELERLEQMRREFvanVSHELRTPLTSIRGYLeLLLDGAADDPEERREYLEIILEEAERLSRLVNDLLD 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 272 LGRKEAVERPPQW----VAPLIERELARLAPLLQRENLDIRLNLDEQS-EVQAPLSLLAIALGNLLKNALSY--AEGHIE 344
Cdd:COG5002 225 LSRLESGELKLEKepvdLAELLEEVVEELRPLAEEKGIELELDLPEDPlLVLGDPDRLEQVLTNLLDNAIKYtpEGGTIT 304
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1175386712 345 IALQGQ----VLTISN-----PTAAAP--------------DQILGYGCGLTIIQRICEKLGWQIE 387
Cdd:COG5002 305 VSLREEddqvRISVRDtgigiPEEDLPriferfyrvdksrsRETGGTGLGLAIVKHIVEAHGGRIW 370
|
|
| PRK11100 |
PRK11100 |
sensory histidine kinase CreC; Provisional |
142-363 |
6.50e-11 |
|
sensory histidine kinase CreC; Provisional
Pssm-ID: 236846 [Multi-domain] Cd Length: 475 Bit Score: 63.71 E-value: 6.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 142 LIGLALLLGcIAFGIWLVRHITRpLDRLRQRVAHLTPDQVdfvPDAPWQELREIELAL------LAGKHEVaavfareQE 215
Cdd:PRK11100 191 LLGIALLIG-AGVVWWLNRSIRR-LTRYADAVTEGKPVPL---PKLGSSELRELAQALesmrvkLEGKAYV-------EQ 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 216 FSRFASHELRTPNMVIQGSAALL-------------GKVTDlpapaaraasriraASDEMALLTETFLLLGRKEA----V 278
Cdd:PRK11100 259 YVQTLTHELKSPLAAIRGAAELLqedpppedrarftGNILT--------------QSARLQQLIDRLLELARLEQrqelE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 279 ERPPQWVAPLIERELARLAPLLQRENLDIRLNLDEQSeVQAPLSLLAIALGNLLKNALSYA--EGHIEIALQGQ----VL 352
Cdd:PRK11100 325 VLEPVALAALLEELVEAREAQAAAKGITLRLRPDDAR-VLGDPFLLRQALGNLLDNAIDFSpeGGTITLSAEVDgeqvAL 403
|
250
....*....|.
gi 1175386712 353 TISNPTAAAPD 363
Cdd:PRK11100 404 SVEDQGPGIPD 414
|
|
| cztS_silS_copS |
TIGR01386 |
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain ... |
128-393 |
1.05e-09 |
|
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Pssm-ID: 273593 [Multi-domain] Cd Length: 457 Bit Score: 60.09 E-value: 1.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 128 YLDPYEDRLHLVTRLiglaLLLGCIAFGIWLVRHITRPLDRLRQRVAHLTPDQVDF---VPDAPwQELREIELALLAGKH 204
Cdd:TIGR01386 158 LLDALRKWLILIAVL----LVLLTALLGWWITRLGLEPLRRLSAVAARISPESLDQrldPSRAP-AELRELAQSFNAMLG 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 205 EVAAVFAREQEFSRFASHELRTP--NMVIQGSAALLGKVTdlPAPAARAASRIRAASDEMALLTETFLLLGRKEAVERPP 282
Cdd:TIGR01386 233 RLEDAFQRLSQFSADLAHELRTPltNLLGQTQVALSQPRT--GEEYREVLESNLEELERLSRMVSDMLFLARADNGQLAL 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 283 QWVAPLIERELARLAPLLQ--RENLDIRLNLDEQSEVQAPLSLLAIALGNLLKNALSYA--EGHIEIALQGQV----LTI 354
Cdd:TIGR01386 311 ERVRLDLAAELAKVAEYFEplAEERGVRIRVEGEGLVRGDPQMFRRAISNLLSNALRHTpdGGTITVRIERRSdevrVSV 390
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1175386712 355 SNPTAAAPDQIL-------------------GYGCGLTIIQRICEKLGWQIETRLEDG 393
Cdd:TIGR01386 391 SNPGPGIPPEHLsrlfdrfyrvdparsnsgeGTGLGLAIVRSIMEAHGGRASAESPDG 448
|
|
| PRK10337 |
PRK10337 |
sensor protein QseC; Provisional |
138-400 |
8.65e-09 |
|
sensor protein QseC; Provisional
Pssm-ID: 182388 [Multi-domain] Cd Length: 449 Bit Score: 56.97 E-value: 8.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 138 LVTRLIGLALLLGCIafgIWLVRHITRPLDRLRQRVAHLTPD-----QVDFVPdapwQELREIELALLAGKHEVAAVFAR 212
Cdd:PRK10337 164 LIPWLVALPIMLIIL---MVLLGRELAPLKKLALALRMRDPDsetplNATGVP----SEVRPLVEALNQLFARTHAMMVR 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 213 EQEFSRFASHELRTP--NMVIQGSAALLGKvtDLPAPAARAASRIRAASDEMALLTETFLLLGRKEAVERP----PQWVA 286
Cdd:PRK10337 237 ERRFTSDAAHELRSPlaALKVQTEVAQLSD--DDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDSLDNLqdvaEIPLE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 287 PLIERELARLAPLLQRENLDIRLNLDEQSEVQA--PLsLLAIALGNLLKNALSYAE--GHIEIALQGQVLTISNPTAAAP 362
Cdd:PRK10337 315 DLLQSAVMDIYHTAQQAGIDVRLTLNAHPVIRTgqPL-LLSLLVRNLLDNAIRYSPqgSVVDVTLNARNFTVRDNGPGVT 393
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1175386712 363 DQIL----------------GYGCGLTIIQRICEKLGWQIE-TRLEDGVFSARLA 400
Cdd:PRK10337 394 PEALarigerfyrppgqeatGSGLGLSIVRRIAKLHGMNVSfGNAPEGGFEAKVS 448
|
|
| phoR_proteo |
TIGR02966 |
phosphate regulon sensor kinase PhoR; Members of this protein family are the regulatory ... |
214-350 |
3.62e-07 |
|
phosphate regulon sensor kinase PhoR; Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems]
Pssm-ID: 274368 [Multi-domain] Cd Length: 333 Bit Score: 51.44 E-value: 3.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 214 QEFSRFASHELRTPNMVIQGSA-ALLGKVTDLPAPAARAASRIRAASDEMALLTETFLLLGRKEAVERPPQW----VAPL 288
Cdd:TIGR02966 115 RDFVANVSHELRTPLTVLRGYLeTLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDepvdMPAL 194
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1175386712 289 IERELARLAPLLQRENLDIRLNLDEQSEVQAPLSLLAIALGNLLKNALSY--AEGHIEIALQGQ 350
Cdd:TIGR02966 195 LDHLRDEAEALSQGKNHQITFEIDGGVDVLGDEDELRSAFSNLVSNAIKYtpEGGTITVRWRRD 258
|
|
| PRK10755 |
PRK10755 |
two-component system sensor histidine kinase PmrB; |
142-380 |
7.29e-06 |
|
two-component system sensor histidine kinase PmrB;
Pssm-ID: 236751 [Multi-domain] Cd Length: 356 Bit Score: 47.66 E-value: 7.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 142 LIGLALLlgciaFGIWLVRHITRPLDRLRQRVAHLTPDQVDFVPDApwQELREIELALLAGKHEVA---AVFAREQEFSR 218
Cdd:PRK10755 70 MVSLTLL-----ICFQAVRWITRPLAELQKELEARTADNLTPIAIH--SSTLEIEAVTSALNQLVSrltSTLDQERLFTA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 219 FASHELRTPNMVIQGSAALLGKVtdlpapAARAASRIRAASDEMALLTETFLLLGR---------KEAVErppqWVAPLI 289
Cdd:PRK10755 143 DVAHELRTPLAGIRLHLELLEKQ------HHIDVAPLIARLDQMMHTVEQLLQLARagqsfssghYQTVK----LLEDVI 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 290 ERELARLAPLLQRENLDIRLNLDEQS-EVQAPLSLLAIALGNLLKNALSYA--EGHIEIAL----QGQVLTIS------N 356
Cdd:PRK10755 213 LPSQDELSEMLEQRQQTLLLPESAADiTVQGDATLLRLLLRNLVENAHRYSpeGSTITIKLsqedGGAVLAVEdegpgiD 292
|
250 260 270
....*....|....*....|....*....|...
gi 1175386712 357 PTAAAP--------DQIL-GYGCGLTIIQRICE 380
Cdd:PRK10755 293 ESKCGElskafvrmDSRYgGIGLGLSIVSRITQ 325
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
221-399 |
3.43e-05 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 45.72 E-value: 3.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 221 SHELRTPNMVIQGSAALL-----GKVTDLPAPAARAASRIRAASDEMALLTETFLLLGRKEAVERPPQWVAPLIERELAR 295
Cdd:COG5000 209 AHEIKNPLTPIQLSAERLrrklaDKLEEDREDLERALDTIIRQVDRLKRIVDEFLDFARLPEPQLEPVDLNELLREVLAL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 296 LAPLLQRENLDIRLNLDEQS-EVQAPLSLLAIALGNLLKNAL--SYAEGHIEIALQGQ----VLTISN-----PTAAApD 363
Cdd:COG5000 289 YEPALKEKDIRLELDLDPDLpEVLADRDQLEQVLINLLKNAIeaIEEGGEIEVSTRREdgrvRIEVSDngpgiPEEVL-E 367
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1175386712 364 QIL---------GYGCGLTIIQRICEKLGWQI--ETRLEDG-VFSARL 399
Cdd:COG5000 368 RIFepffttkpkGTGLGLAIVKKIVEEHGGTIelESRPGGGtTFTIRL 415
|
|
| COG4251 |
COG4251 |
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal ... |
115-386 |
2.92e-04 |
|
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms];
Pssm-ID: 443393 [Multi-domain] Cd Length: 503 Bit Score: 42.85 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 115 GLLYLVFNDDADDYLDPYEDRLHLVTRLIGLALLLGCIAFGIWLVRHITRPLDRLRQRVAHLTPDQVDFVPDAPWQELRE 194
Cdd:COG4251 177 ELELLLLLLLVLLLLLLLLLLLLLLLLRLLLELLLLLEAELLLSLGGGLGLLLLLLLLLVLLLLLILLLLLLILVLELLE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 195 IELALLAGKHEVAAVFA------RE-QEFSRFASHELRTPNMVIQGSAALLGK--VTDLPAPAARAASRIRAASDEMALL 265
Cdd:COG4251 257 LRLELEELEEELEERTAelersnEElEQFAYVASHDLREPLRKISGFSQLLEEdyGDKLDEEGREYLERIRDAAERMQAL 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 266 TETFLLLGRKEAVERPPQWV--APLIERELARLAPLLQRENldIRLNLDEQSEVQAPLSLLAIALGNLLKNALSY----A 339
Cdd:COG4251 337 IDDLLAYSRVGRQELEFEPVdlNELLEEVLEDLEPRIEERG--AEIEVGPLPTVRGDPTLLRQVFQNLISNAIKYsrpgE 414
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1175386712 340 EGHIEIALQ----GQVLTIS------NPTAA-----------APDQILGYGCGLTIIQRICEKLGWQI 386
Cdd:COG4251 415 PPRIEIGAEreggEWVFSVRdngigiDPEYAekifeifqrlhSRDEYEGTGIGLAIVKKIVERHGGRI 482
|
|
| CitA |
COG3290 |
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ... |
303-399 |
3.11e-04 |
|
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];
Pssm-ID: 442519 [Multi-domain] Cd Length: 389 Bit Score: 42.53 E-value: 3.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 303 ENLDIRLNLDEQSEV-QAPLS--LLAIALGNLLKNAL------SYAEGHIEIALQGQ----VLTISNPTAAAPDQIL--- 366
Cdd:COG3290 258 RERGIDLTIDIDSDLpDLPLSdtDLVTILGNLLDNAIeaveklPEEERRVELSIRDDgdelVIEVEDSGPGIPEELLeki 337
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1175386712 367 ---GY--------GCGLTIIQRICEKLGWQIETRLEDG---VFSARL 399
Cdd:COG3290 338 ferGFstklgegrGLGLALVKQIVEKYGGTIEVESEEGegtVFTVRL 384
|
|
| HATPase_AgrC-ComD-like |
cd16935 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
299-397 |
4.96e-04 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) including Staphylococcus aureus AgrC which is an HK of the accessory gene regulator (agr) quorum sensing two-component regulatory system (TCS) AgrC-AgrA. The agr system plays a part in the transition from persistent to virulent phenotype. This family also includes Streptococcus pneumoniae ComD HK of the ComD-ComE TCS, involved in quorum sensing and genetic competence.
Pssm-ID: 340412 [Multi-domain] Cd Length: 134 Bit Score: 39.87 E-value: 4.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 299 LLQRENLDIRLNLDEQSEVQAPLSL--LAIALGNLLKNALSYAEG--------HIEIALQGQ--VLTISNPTAAAPDQIL 366
Cdd:cd16935 10 LELAREKGIEFTIEIDIPILLPISPldLCIIFGNLLDNAIEACAKidkenrfiHLKIRQKKGflIISIENSYEGELKKKN 89
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1175386712 367 G----------YGCGLTIIQRICEKLGWQIETRLEDGVFSA 397
Cdd:cd16935 90 GlflstkkdknHGIGLKSIREIVKKYNGNLSIEYENGIFTL 130
|
|
| HATPase_c |
pfam02518 |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ... |
324-399 |
1.36e-03 |
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 460579 [Multi-domain] Cd Length: 109 Bit Score: 38.12 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 324 LAIALGNLLKNALSYA--EGHIEIALQGQ---VLTISNPTAAAPDQIL----------------GYGCGLTIIQRICEKL 382
Cdd:pfam02518 6 LRQVLSNLLDNALKHAakAGEITVTLSEGgelTLTVEDNGIGIPPEDLprifepfstadkrgggGTGLGLSIVRKLVELL 85
|
90 100
....*....|....*....|
gi 1175386712 383 GWQIETRLEDG---VFSARL 399
Cdd:pfam02518 86 GGTITVESEPGggtTVTLTL 105
|
|
| HATPase_c_5 |
pfam14501 |
GHKL domain; This family represents the structurally related ATPase domains of histidine ... |
324-395 |
1.76e-03 |
|
GHKL domain; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 433996 [Multi-domain] Cd Length: 102 Bit Score: 37.58 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 324 LAIALGNLLKNALSYAEG---------HIEIALQGQVLTISNPTA---AAPDQIL-------GYGCGLTIIQRICEKLGW 384
Cdd:pfam14501 6 LCVIFGNLLDNAIEACSKiddnrfirlKIREKQNFLIIRIENTYEgelKFEGKLPstktkgdGHGIGLKSIRRIVKKYGG 85
|
90
....*....|.
gi 1175386712 385 QIETRLEDGVF 395
Cdd:pfam14501 86 NLSTEIENGIF 96
|
|
| HATPase_EnvZ-like |
cd16950 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
327-393 |
1.80e-03 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli EnvZ and Pseudomonas aeruginosa BfmS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Escherichia coli EnvZ of the EnvZ-OmpR two-component regulatory system (TCS), which functions in osmoregulation. It also contains the HATPase domain of Pseudomonas aeruginosa BfmS, the HK of the BfmSR TCS, which functions in the regulation of the rhl quorum-sensing system and bacterial virulence in P. aeruginosa. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA) and a HAMP sensor domain; some also contain a periplasmic domain.
Pssm-ID: 340426 [Multi-domain] Cd Length: 101 Bit Score: 37.43 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 327 ALGNLLKNALSYAEGHIEIALQG-------QVLtiSNPTAAAPDQI----------------LGYGCGLTIIQRICEKLG 383
Cdd:cd16950 4 VLSNLVDNALRYGGGWVEVSSDGegnrtriQVL--DNGPGIAPEEVdelfqpfyrgdnargtSGTGLGLAIVQRISDAHG 81
|
90
....*....|
gi 1175386712 384 WQIETRLEDG 393
Cdd:cd16950 82 GSLTLANRAG 91
|
|
| HATPase_BasS-like |
cd16940 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
317-402 |
2.15e-03 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli BasS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) similar to Escherichia coli BasS HK of the BasS-BasR two-component regulatory system (TCS). Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some contain a HAMP sensory domain, while some an N-terminal two-component sensor kinase domain.
Pssm-ID: 340417 [Multi-domain] Cd Length: 113 Bit Score: 37.77 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 317 VQAPLSLLAIALGNLLKNALSY--AEGHIEIALQGQ---VLTISNPTAAAPDQIL----------------GYGCGLTII 375
Cdd:cd16940 7 VQGDALLLFLLLRNLVDNAVRYspQGSRVEIKLSADdgaVIRVEDNGPGIDEEELealferfyrsdgqnygGSGLGLSIV 86
|
90 100
....*....|....*....|....*..
gi 1175386712 376 QRICEKLGWQIetRLEDGVFSARLAMI 402
Cdd:cd16940 87 KRIVELHGGQI--FLGNAQGGGLEAWV 111
|
|
| HATPase_VanS-like |
cd16923 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
324-399 |
2.95e-03 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Enterococcus faecium VanS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Enterococcus faecium VanS HK of the VanS-VanR two-component regulatory system (TCS) which activates the transcription of vanH, vanA and vanX vancomycin resistance genes. It also contains Ecoli YedV and PcoS, probable members of YedW-YedV TCS and PcoS-PcoR TCS, repectively. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); most also have a HAMP sensor domain.
Pssm-ID: 340400 [Multi-domain] Cd Length: 102 Bit Score: 36.98 E-value: 2.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1175386712 324 LAIALGNLLKNALSYAEG----HIEIALQGQV--LTISNPTA----AAPDQIL-------------GYGCGLTIIQRICE 380
Cdd:cd16923 1 LQRVFSNLLSNAIKYSPEntriYITSFLTDDVvnIMFKNPSShpldFKLEKLFerfyrgdnsrnteGAGLGLSIAKAIIE 80
|
90 100
....*....|....*....|.
gi 1175386712 381 KLGWQIETRLEDG--VFSARL 399
Cdd:cd16923 81 LHGGSASAEYDDNhdLFKVRL 101
|
|
| |
