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Conserved domains on  [gi|1180389751|ref|WP_083908550|]
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NADH-quinone oxidoreductase subunit B family protein [Ilumatobacter coccineus]

Protein Classification

NADH-quinone oxidoreductase subunit B( domain architecture ID 10001254)

NADH-quinone oxidoreductase subunit B (NuoB) is part of the connecting domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Gene Ontology:  GO:0048038|GO:0016655|GO:0005886
PubMed:  23417064|24059520

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 10-156 3.94e-101

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


:

Pssm-ID: 440146  Cd Length: 152  Bit Score: 287.85  E-value: 3.94e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751  10 TGKLEDLVNWARSRSSWPASFGLACCAIEMMATGGAHYDISRFGMEVFRASPRQADIMIVAGRVSQKMAPVLRQVYDQMM 89
Cdd:COG0377     1 LTTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAEVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMP 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1180389751  90 EPKWVISMGVCASSGGMFN-NYAIVQGVDQVVPVDVYAPGCPPTPETLIHAIEQLHGLIETQEIMKRR 156
Cdd:COG0377    81 EPKWVIAMGACAISGGPYWdSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRK 148
 
Name Accession Description Interval E-value
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 10-156 3.94e-101

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 287.85  E-value: 3.94e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751  10 TGKLEDLVNWARSRSSWPASFGLACCAIEMMATGGAHYDISRFGMEVFRASPRQADIMIVAGRVSQKMAPVLRQVYDQMM 89
Cdd:COG0377     1 LTTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAEVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMP 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1180389751  90 EPKWVISMGVCASSGGMFN-NYAIVQGVDQVVPVDVYAPGCPPTPETLIHAIEQLHGLIETQEIMKRR 156
Cdd:COG0377    81 EPKWVIAMGACAISGGPYWdSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRK 148
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
7-170 2.64e-98

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 281.87  E-value: 2.64e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751   7 NVITGKLEDLVNWARSRSSWPASFGLACCAIEMMATGGAHYDISRFGMeVFRASPRQADIMIVAGRVSQKMAPVLRQVYD 86
Cdd:PRK06411   19 GVVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGM-VFRASPRQADLMIVAGTLTNKMAPALRRLYD 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751  87 QMMEPKWVISMGVCASSGGMFNN-YAIVQGVDQVVPVDVYAPGCPPTPETLIHAIEQLHGLIETQEIMKRRAANGGGANI 165
Cdd:PRK06411   98 QMPEPKWVISMGSCANSGGMYHYsYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERERKRGERIAVTNL 177


                  ....*
gi 1180389751 166 HVEEI 170
Cdd:PRK06411  178 RTPTI 182
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 7-150 1.48e-92

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 266.14  E-value: 1.48e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751   7 NVITGKLEDLVNWARSRSSWPASFGLACCAIEMMATGGAHYDISRFGMEVFRASPRQADIMIVAGRVSQKMAPVLRQVYD 86
Cdd:TIGR01957   1 GVLLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGSEVFRASPRQADVMIVAGTVTKKMAPALRRLYD 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1180389751  87 QMMEPKWVISMGVCASSGGMFNN-YAIVQGVDQVVPVDVYAPGCPPTPETLIHAIEQLHGLIETQ 150
Cdd:TIGR01957  81 QMPEPKWVISMGACANSGGMFHTsYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
35-143 1.85e-34

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 118.07  E-value: 1.85e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751  35 CAIEMMATGGAHYDISRFGMEVF--------RASPRQADIMIVAGRVSQKMAPVLRQVYDQMMEPKWVISMGVCASSGGM 106
Cdd:pfam01058   4 CTISLLALHPPLLDLLDLISLRYgiplmaspREIPEGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFGGI 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1180389751 107 F---NNYA-IVQGVDQVVPVDVYAPGCPPTPETLIHAIEQL 143
Cdd:pfam01058  84 PaagNNPSyGVRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
 
Name Accession Description Interval E-value
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 10-156 3.94e-101

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 287.85  E-value: 3.94e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751  10 TGKLEDLVNWARSRSSWPASFGLACCAIEMMATGGAHYDISRFGMEVFRASPRQADIMIVAGRVSQKMAPVLRQVYDQMM 89
Cdd:COG0377     1 LTTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAEVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMP 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1180389751  90 EPKWVISMGVCASSGGMFN-NYAIVQGVDQVVPVDVYAPGCPPTPETLIHAIEQLHGLIETQEIMKRR 156
Cdd:COG0377    81 EPKWVIAMGACAISGGPYWdSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRK 148
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
7-170 2.64e-98

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 281.87  E-value: 2.64e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751   7 NVITGKLEDLVNWARSRSSWPASFGLACCAIEMMATGGAHYDISRFGMeVFRASPRQADIMIVAGRVSQKMAPVLRQVYD 86
Cdd:PRK06411   19 GVVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGM-VFRASPRQADLMIVAGTLTNKMAPALRRLYD 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751  87 QMMEPKWVISMGVCASSGGMFNN-YAIVQGVDQVVPVDVYAPGCPPTPETLIHAIEQLHGLIETQEIMKRRAANGGGANI 165
Cdd:PRK06411   98 QMPEPKWVISMGSCANSGGMYHYsYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERERKRGERIAVTNL 177


                  ....*
gi 1180389751 166 HVEEI 170
Cdd:PRK06411  178 RTPTI 182
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 7-150 1.48e-92

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 266.14  E-value: 1.48e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751   7 NVITGKLEDLVNWARSRSSWPASFGLACCAIEMMATGGAHYDISRFGMEVFRASPRQADIMIVAGRVSQKMAPVLRQVYD 86
Cdd:TIGR01957   1 GVLLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGSEVFRASPRQADVMIVAGTVTKKMAPALRRLYD 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1180389751  87 QMMEPKWVISMGVCASSGGMFNN-YAIVQGVDQVVPVDVYAPGCPPTPETLIHAIEQLHGLIETQ 150
Cdd:TIGR01957  81 QMPEPKWVISMGACANSGGMFHTsYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
PRK14815 PRK14815
NADH dehydrogenase subunit B; Provisional
 7-155 1.27e-70

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 237821  Cd Length: 183  Bit Score: 212.07  E-value: 1.27e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751   7 NVITGKLEDLVNWARSRSSWPASFGLACCAIEMMATGGAHYDISRFGMEVFRASPRQADIMIVAGRVSQKMAPVLRQVYD 86
Cdd:PRK14815   17 NVVVTTLDAAINWIRKNSLWPMPMGLACCAIELMAVACSRFDISRFGAEVMRFSPRQADVMIVAGTVTYKMALAVRRIYD 96

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1180389751  87 QMMEPKWVISMGVCASSGGMFNNYAIVQGVDQVVPVDVYAPGCPPTPETLIHAIEQLHGLIETQEIMKR 155
Cdd:PRK14815   97 QMPEPKWVIAMGACASSGGMYRSYSVLQGVDRILPVDVYISGCPPRPEAILDALIKLQKKIDTERAART 165
PRK14819 PRK14819
NADH-quinone oxidoreductase subunit B;
6-156 1.46e-69

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 237822  Cd Length: 264  Bit Score: 212.15  E-value: 1.46e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751   6 HNVITGKLEDLVNWARSRSSWPASFGLACCAIEMMATGGAHYDISRFGMEVFRASPRQADIMIVAGRVSQKMAPVLRQVY 85
Cdd:PRK14819   14 QGVLLTTVNRFYNWGRRSSVWPMAFGLACCAIEMMATGLSRYDLARFGAELFRASPRQADLMIVAGTVTKKMAPQVVRLY 93

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1180389751  86 DQMMEPKWVISMGVCASSGGMF-NNYAIVQGVDQVVPVDVYAPGCPPTPETLIHAIEQLHGLIETQEIMKRR 156
Cdd:PRK14819   94 NQMPEPRYVISMGACATSGGPFrDGYNVLRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQSLGRVR 165
PRK14820 PRK14820
NADH-quinone oxidoreductase subunit B;
12-155 5.91e-68

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 184833  Cd Length: 180  Bit Score: 205.06  E-value: 5.91e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751  12 KLEDLVNWARSRSSWPASFGLACCAIEMMATGGAHYDISRFGMEVFRASPRQADIMIVAGRVSQKMAPVLRQVYDQMMEP 91
Cdd:PRK14820   22 SLDSVIGLARKNSLWPLPFATSCCGIEFMATMASHYDLARFGSERPSFSPRQADMLMVMGTIAKKMAPVLKQVYLQMAEP 101

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1180389751  92 KWVISMGVCASSGGMFNNYAIVQGVDQVVPVDVYAPGCPPTPETLIHAIEQLHGLIETQEIMKR 155
Cdd:PRK14820  102 RWVVAVGACASSGGIFDTYSVLQGIDRIIPVDVYVPGCPPRPEQIIDGVMRVQELVKNESLRRR 165
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
5-151 6.10e-66

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 215.41  E-value: 6.10e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751   5 THNVITGKLEDLVNWARSRSSWPASFGLACCAIEMMATGGAHYDISRFGMEVFRASPRQADIMIVAGRVSQKMAPVLRQV 84
Cdd:PRK13292    4 PENILLASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRGTPREADLMVIAGTVFKKMAPSILRL 83

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1180389751  85 YDQMMEPKWVISMGVCASSGGMFNNYAIVQGVDQVVPVDVYAPGCPPTPETLIHAIEQLHGLIETQE 151
Cdd:PRK13292   84 YEQMAEPKWVISMGSCANSGGMYDVYSVVQGVNQILPVDVYIPGCPPRPEAFLQGLMLLQEKIRREE 150
PRK14816 PRK14816
NADH-quinone oxidoreductase subunit B;
7-151 4.88e-65

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173277  Cd Length: 182  Bit Score: 197.83  E-value: 4.88e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751   7 NVITGKLEDLVNWARSRSSWPASFGLACCAIEMMATGGAHYDISRFGMEVFRASPRQADIMIVAGRVSQKMAPVLRQVYD 86
Cdd:PRK14816   25 NVFVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYD 104

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1180389751  87 QMMEPKWVISMGVCASSGGMF-NNYAIVQGVDQVVPVDVYAPGCPPTPETLIHAIEQLHGLIETQE 151
Cdd:PRK14816  105 QMADPKYVIAVGGCAVSGGPFkKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 170
PRK14814 PRK14814
NADH dehydrogenase subunit B; Provisional
 11-156 2.08e-64

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173275  Cd Length: 186  Bit Score: 196.40  E-value: 2.08e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751  11 GKLEDLVNWARSRSSWPASFGLACCAIEMMATGGAHYDISRFGMEVFRASPRQADIMIVAGRVSQKMAPVLRQVYDQMME 90
Cdd:PRK14814   21 GNLESVIQWGRSFSLWPYPFATACCGIEYMSTACSDYDIARFGAERPSFSPRQADMILVLGTITYKMAPVLRQIYDQMAE 100

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1180389751  91 PKWVISMGVCASSGGMFNNYAIVQGVDQVVPVDVYAPGCPPTPETLIHAIEQLHGLIETQEIMKRR 156
Cdd:PRK14814  101 PKFVISVGACASSGGMFHTYGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQTKLKTQGLEARR 166
ndhK CHL00023
NADH dehydrogenase subunit K
 7-156 3.71e-59

NADH dehydrogenase subunit K


Pssm-ID: 214337  Cd Length: 225  Bit Score: 184.14  E-value: 3.71e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751   7 NVITGKLEDLVNWARSRSSWPASFGLACCAIEMMATGGAHYDISRFGMeVFRASPRQADIMIVAGRVSQKMAPVLRQVYD 86
Cdd:CHL00023   16 SVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTVTMKMAPSLVRLYE 94

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1180389751  87 QMMEPKWVISMGVCASSGGMF--NNYAIVQGVDQVVPVDVYAPGCPPTPETLIHAIEQLHGLIeTQEIMKRR 156
Cdd:CHL00023   95 QMPEPKYVIAMGACTITGGMFstDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKI-SREIYEDR 165
PRK14817 PRK14817
NADH-quinone oxidoreductase subunit B;
11-165 3.26e-58

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173278  Cd Length: 181  Bit Score: 180.54  E-value: 3.26e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751  11 GKLEDLVN----WARSRSSWPASFGLACCAIEMMATGGAHYDISRFGMEVFRASPRQADIMIVAGRVSQKMAPVLRQVYD 86
Cdd:PRK14817   19 GFLQGLVSkslgWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQADLLMVVGTVNCKQAPILQRVYE 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751  87 QMMEPKWVISMGVCASSGGMFNNYAIVQGVDQVVPVDVYAPGCPPTPETLIHAIEQLHGLIETQ--EIMKRRAANGGGAN 164
Cdd:PRK14817   99 QMADPKWVMAFGVCASSGGFYDNYATVQGIDRIIPVDVYVPGCPPRPEQVLDGIMLLQKKIQNQshKLIDRKPLPVIAGG 178


                  .
gi 1180389751 165 I 165
Cdd:PRK14817  179 A 179
PRK14818 PRK14818
NADH dehydrogenase subunit B; Provisional
 2-163 3.73e-58

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173279  Cd Length: 173  Bit Score: 180.15  E-value: 3.73e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751   2 GGLTHNVITGKLEDLVNWARSRSSWPASFGLACCAIEMMATGGAHYDISRFGmEVFRASPRQADIMIVAGRVSQKMAPVL 81
Cdd:PRK14818   10 GGDVTLLHTSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFG-AIPRASPRQADFMIVAGTLTYKMAERA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751  82 RQVYDQMMEPKWVISMGVCASSGGMFN-NYAIVQGVDQVVPVDVYAPGCPPTPETLIHAIEQLHGLIETQEIMKRRAANG 160
Cdd:PRK14818   89 RLLYDQMPEPKYVISMGSCSNCGGLFQlGYSVCKGVDKVIPVDVYVPGCPPRPEALTEGLLRLQEIVRSEPWSTKRRPAA 168


                  ...
gi 1180389751 161 GGA 163
Cdd:PRK14818  169 QAE 171
PRK14813 PRK14813
NADH dehydrogenase subunit B; Provisional
 6-157 8.52e-58

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173274  Cd Length: 189  Bit Score: 179.69  E-value: 8.52e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751   6 HNVITGKLEDLVNWARSRSSWPASFGLACCAIEMMATGGAHYDISRFGmeVF-RASPRQADIMIVAGRVSQKMAPVLRQV 84
Cdd:PRK14813   11 HNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFG--IFpRSSPRQSDLMIVAGTVTMKMAERVVRL 88

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1180389751  85 YDQMMEPKWVISMGVCASSGGMF--NNYAIVQGVDQVVPVDVYAPGCPPTPETLIHAIEQLHGLIETQEIMKRRA 157
Cdd:PRK14813   89 YEQMPEPRYVLSMGSCSNCGGPYweHGYHVLKGVDRIIPVDVYVPGCPPRPEALIGGLMKVQELIRMEQIGISRA 163
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
35-148 7.29e-52

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 162.65  E-value: 7.29e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751  35 CAIEMMATGGAHYDISRFGMeVFRASPRQADIMIVAGRVSQKMAPVLRQVYDQMMEPKWVISMGVCASSGGMF-NNYAIV 113
Cdd:COG3260    20 CEIEILALLTPRYDLERFGI-KFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVVAVGDCACSGGVFrDSYAVL 98

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1180389751 114 QGVDQVVPVDVYAPGCPPTPETLIHAIEQLHGLIE 148
Cdd:COG3260    99 GGVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLE 133
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
35-143 1.85e-34

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 118.07  E-value: 1.85e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751  35 CAIEMMATGGAHYDISRFGMEVF--------RASPRQADIMIVAGRVSQKMAPVLRQVYDQMMEPKWVISMGVCASSGGM 106
Cdd:pfam01058   4 CTISLLALHPPLLDLLDLISLRYgiplmaspREIPEGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFGGI 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1180389751 107 F---NNYA-IVQGVDQVVPVDVYAPGCPPTPETLIHAIEQL 143
Cdd:pfam01058  84 PaagNNPSyGVRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
FrhG COG1941
Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];
28-143 5.38e-07

Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];


Pssm-ID: 441544 [Multi-domain]  Cd Length: 262  Bit Score: 48.00  E-value: 5.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751  28 ASFGLACC-----AI----EMMATGGAHYDISRF--GMEVfRASPRQADIMIVAGRVS----QKMAPVLRQVydqmmePK 92
Cdd:COG1941     7 ATYWLAGCsgcqlSFldldERLLDLLELVEIVYFpeASDV-KEIPEPVDVALVEGSIRneenEERLKEIREK------SK 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180389751  93 WVISMGVCASSGG---MFNNY-----------------------------AIVQGVDQVVPVDVYAPGCPPTPETLIHAI 140
Cdd:COG1941    80 ILVALGACAVTGGipaLRNLYdleellervygetpstnpqipgeelpellDRVRPLSEVVKVDYELPGCPPDPDQILEVL 159


                  ...
gi 1180389751 141 EQL 143
Cdd:COG1941   160 TAL 162
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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