|
Name |
Accession |
Description |
Interval |
E-value |
| PBP1_ABC_LivK_ligand_binding-like |
cd06347 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
37-377 |
2.64e-120 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380570 [Multi-domain] Cd Length: 334 Bit Score: 351.84 E-value: 2.64e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVKvngkSYKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd06347 1 KIGVIGPLTGEAAAYGQPALNGAELAVDEINAAGGIL----GKKIELIVYDNKSDPTEAANAAQKLIDEDKVVAIIGPVT 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITLQKngnvqPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFQDNSSDYGTG 196
Cdd:cd06347 77 SSIALAAAPIAQKAKIPMITPSATNPLVTKGG-----DYIFRACFTDPFQGAALAKFAYEELGAKKAAVLYDVSSDYSKG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 197 ITSAFKKDFK---GNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGIGDPKT 273
Cdd:cd06347 152 LAKAFKEAFEklgGEIVAEETYTSGDTDFSAQLTKIKAANPDVIFLPGYYEEAALIIKQARELGITAPILGGDGWDSPEL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 274 AEIAGnKNTSNVYYAAHFSVDAPaTKVSAPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENENSTSKSAITKGLANLK 353
Cdd:cd06347 232 LELGG-DAVEGVYFTTHFSPDDP-SPEVQEFVKAYKAKYGEPPNAFAALGYDAVMLLADAIKRAGSTDPEAIRDALAKTK 309
|
330 340
....*....|....*....|....
gi 1180510860 354 NFDGVTGKMSIDKDHNPVKSMVMV 377
Cdd:cd06347 310 DFEGVTGTITFDPNGNPIKPAVIL 333
|
|
| PBP1_ABC_HAAT-like |
cd06349 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
37-383 |
1.92e-80 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380572 [Multi-domain] Cd Length: 338 Bit Score: 250.18 E-value: 1.92e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd06349 1 KIGVSGPLTGDNAEYGQQFKNGVELAVDEINAAGGV--NGR--KLELVVYDDQGDPKEAVNIAQKFVSDDKVVAVIGDFS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITlqkngNVQPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFQDNSsDYGTG 196
Cdd:cd06349 77 SSCSMAAAPIYEEAGLVQISPTASHPDFT-----KGGDYVFRNSPTQAVEAPFLADYAVKKLGAKKIAIIYLNT-DWGVS 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 197 ITSAFKKDFK---GNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGIGDPKT 273
Cdd:cd06349 151 AADAFKKAAKalgGEIVATEAYLPGTKDFSAQITKIKNANPDAIYLAAYYNDAALIAKQARQLGWDVQIFGSSSLYSPEF 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 274 AEIAGnKNTSNVYYAAHFSVDAPATKVSApFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENENSTSKsAITKGLANLK 353
Cdd:cd06349 231 IELAG-DAAEGVYLSSPFFPESPDPEVKE-FVKAYKAKYGEDPDDFAARAYDAVNILAEAIEKAGTDRE-AIRDALANIK 307
|
330 340 350
....*....|....*....|....*....|
gi 1180510860 354 NFDGVTGKMSIDKDHNPVKSMVMVGMTDGK 383
Cdd:cd06349 308 DFSGLTGTITFDENGDVLKSLTILVVKDGK 337
|
|
| LivK |
COG0683 |
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid ... |
33-377 |
6.58e-80 |
|
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid transport and metabolism];
Pssm-ID: 440447 [Multi-domain] Cd Length: 314 Bit Score: 247.92 E-value: 6.58e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 33 SNVIKIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIV 112
Cdd:COG0683 1 ADPIKIGVLLPLTGPYAALGQPIKNGAELAVEEINAAGGV--LGR--KIELVVEDDASDPDTAVAAARKLIDQDKVDAIV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 113 GPVITSGVQAAVPVATQGKTPMISPTAGADNITLQKNGnvqPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFQDNSsD 192
Cdd:COG0683 77 GPLSSGVALAVAPVAEEAGVPLISPSATAPALTGPECS---PYVFRTAPSDAQQAEALADYLAKKLGAKKVALLYDDY-A 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 193 YGTGITSAFKKDFK---GNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVigpdgig 269
Cdd:COG0683 153 YGQGLAAAFKAALKaagGEVVGEEYYPPGTTDFSAQLTKIKAAGPDAVFLAGYGGDAALFIKQAREAGLKGPL------- 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 270 dpktaeiagnkntsnvyyaahfsvdapatkvSAPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENENSTSKSAITKGL 349
Cdd:COG0683 226 -------------------------------NKAFVKAYKAKYGREPSSYAAAGYDAALLLAEAIEKAGSTDREAVRDAL 274
|
330 340
....*....|....*....|....*...
gi 1180510860 350 ANLKnFDGVTGKMSIDKDHNPVKSMVMV 377
Cdd:COG0683 275 EGLK-FDGVTGPITFDPDGQGVQPVYIV 301
|
|
| PBP1_ABC_ligand_binding-like |
cd19984 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
37-331 |
3.65e-73 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380639 [Multi-domain] Cd Length: 296 Bit Score: 230.18 E-value: 3.65e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKSYKfnIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd19984 1 KIGVILPLTGDAASYGEDMKNGIELAVEEINAAGGI--NGKKIE--LIYEDSKCDPKKAVSAANKLINVDKVKAIIGGVC 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITlqKNGNvqpYVFRAQYKNSFMGTKMAQFATETLKaKNIVIFQDNSsDYGTG 196
Cdd:cd19984 77 SSETLAIAPIAEQNKVVLISPGASSPEIT--KAGD---YIFRNYPSDAYQGKVLAEFAYNKLY-KKVAILYENN-DYGVG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 197 ITSAFKKDFK---GNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGIGDPKT 273
Cdd:cd19984 150 LKDVFKKEFEelgGKIVASESFEQGETDFRTQLTKIKAANPDAIFLPGYPKEGGLILKQAKELGIKAPILGSDGFEDPEL 229
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1180510860 274 AEIAGNkNTSNVYYAAHFsVDAPATKVSAPFAKAYKKAYGKYPSQFTALAYDSVRMIK 331
Cdd:cd19984 230 LEIAGE-AAEGVIFTYPA-FDDSSEKKQKFFFYRYKEKYGKEPDIYAALAYDAVMILA 285
|
|
| PBP1_ABC_LIVBP-like |
cd06342 |
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active ... |
37-369 |
1.75e-72 |
|
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Pssm-ID: 380565 [Multi-domain] Cd Length: 334 Bit Score: 229.72 E-value: 1.75e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGvkvnGKSYKFNIINKDAKTDNTETASVTSSLINkEKVSAIVGPVI 116
Cdd:cd06342 1 KIGVAGPLTGPNAALGQDIRNGAELAVDEINAKGG----GLGFKIELVAQDDACDPAQAVAAAQKLVA-DGVVAVIGHYN 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITLQKNGNVqpyvFRAQYKNSFMGTKMAQFATETLKAKNIVIFQDNSsDYGTG 196
Cdd:cd06342 76 SGAAIAAAPIYAEAGIPMISPSATNPKLTEQGYKNF----FRVVGTDDQQGPAAADYAAKTLKAKRVAVIHDGT-AYGKG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 197 ITSAFKKDFK---GNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGIGDPKT 273
Cdd:cd06342 151 LADAFKKALKalgGTVVGREGITPGTTDFSALLTKIKAANPDAVYFGGYYPEAGLLLRQLREAGLKAPFMGGDGIVSPDF 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 274 AEIAGnKNTSNVYYAAHfSVDAPATKVSAPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENENSTSKSAITKGLANLK 353
Cdd:cd06342 231 IKAAG-DAAEGVYATTP-GAPPEKLPAAKAFLKAYKAKFGEPPGAYAAYAYDAAQVLLAAIEKAGSTDRAAVAAALRATD 308
|
330
....*....|....*.
gi 1180510860 354 nFDGVTGKMSIDKDHN 369
Cdd:cd06342 309 -FDGVTGTISFDAKGD 323
|
|
| PBP1_ABC_HAAT-like |
cd06348 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
37-382 |
1.04e-70 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380571 [Multi-domain] Cd Length: 342 Bit Score: 225.19 E-value: 1.04e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVKvngkSYKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd06348 1 KIGVALSLTGPGALYGQSQKNGAQLAVEEINAAGGVG----GVKIELIVEDTAGDPEQAINAFQKLINQDKVLAILGPTL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITlqkngNVQPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFQDNSSDYGTG 196
Cdd:cd06348 77 SSEAFAADPIAQQAKVPVVGISNTAPGIT-----DIGPYIFRNSLPEDKVIPPTVKAAKKKYGIKKVAVLYDQDDAFTVS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 197 ITSAFKKDFKGN---VVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGIGDPKT 273
Cdd:cd06348 152 GTKVFPAALKKNgveVLDTETFQTGDTDFSAQLTKIKALNPDAIVISALAQEGALIVKQARELGLKGPIVGGNGFNSPDL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 274 AEIAGnKNTSNVYYAAHFSVDAPATKVSApFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENENSTSK-----SAITKG 348
Cdd:cd06348 232 IKLAG-KAAEGVIVGSAWSPDNPDPKNQA-FVAAYKEKYGKEPDQFAAQAYDAAYILAEAIKKAGSTTDradlrDALARI 309
|
330 340 350
....*....|....*....|....*....|....
gi 1180510860 349 LANlKNFDGVTGKMSIDKDHNPVKSMVMVGMTDG 382
Cdd:cd06348 310 LIA-KDFEGPLGPFSFDADRDGIQPPVVLIVKDG 342
|
|
| PBP1_ABC_transporter_LIVBP-like |
cd06268 |
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the ... |
37-330 |
3.27e-69 |
|
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily; Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.
Pssm-ID: 380492 [Multi-domain] Cd Length: 298 Bit Score: 219.89 E-value: 3.27e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd06268 1 KIGVVVPLTGPYADYGEEILRGVALAVEEINAAGGI--NGR--KLELVIADDQGDPETAVAVARKLVDDDKVLAVVGHYS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITLQKNgnvqPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFQDNSsDYGTG 196
Cdd:cd06268 77 SSVTLAAAPIYQEAGIPLISPGSTAPELTEGGG----PYVFRTVPSDAMQAAALADYLAKKLKGKKVAILYDDY-DYGKS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 197 ITSAFKKDFK---GNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGIGDPKT 273
Cdd:cd06268 152 LADAFKKALKalgGEIVAEEDFPLGTTDFSAQLTKIKAAGPDVLFLAGYGADAANALKQARELGLKLPILGGDGLYSPEL 231
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1180510860 274 AEIAGnKNTSNVYYAAHFSVDAPATKVSApFAKAYKKAYGKYPSQFTALAYDSVRMI 330
Cdd:cd06268 232 LKLGG-EAAEGVVVAVPWHPDSPDPPKQA-FVKAYKKKYGGPPSWRAATAYDATQAL 286
|
|
| PBP1_ABC_RPA1789-like |
cd06333 |
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, ... |
37-377 |
1.02e-66 |
|
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, RPA1791-1793), involved in active transport of lignin-derived aromatic substrates, and its close homologs; This group includes RPA1789 (CouP) from Rhodopseudomonas palustris and its close homologs in other bacteria. RPA1789 (CouP) is the periplasmic binding-protein component of an ABC system (CouPSTU; RPA1789, RPA1791-1793) that is involved in the active transport of lignin-derived aromatic substrates. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380556 [Multi-domain] Cd Length: 342 Bit Score: 215.10 E-value: 1.02e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd06333 1 KIGAILSLTGPAASLGIPERNAVELLVEQINAAGGI--NGR--KLELIVYDDESDPTKAVTNARKLIEEDKVDAIIGPST 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPtAGADNITLQKNgnvqPYVFRAQYKNSFMGTKMAQFATETlKAKNIVIFQDNSSdYGTG 196
Cdd:cd06333 77 TGESLAVAPIAEEAKVPLISL-AGAAAIVEPVR----KWVFKTPQSDSLVAEAILDYMKKK-GIKKVALLGDSDA-YGQS 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 197 ITSAFKK---DFKGNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGIGDPKT 273
Cdd:cd06333 150 GRAALKKlapEYGIEIVADERFARTDTDMTAQLTKIRAAKPDAVLVWASGPPAALVAKNLRQLGYKGPIYQSHGAANQDF 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 274 AEIAGnKNTSNVYYAAHFSVDA-------PATKVSAPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENENSTSKSAIT 346
Cdd:cd06333 230 IKLAG-KAAEGVILPAGKLLVAdqlpdsdPQKKVLLEFVKAYEAKYGEGPSTFAGHAYDALLLLVEAIEPAGGTDRAALR 308
|
330 340 350
....*....|....*....|....*....|....
gi 1180510860 347 KGLANLKNFDGVTGKMSID-KDHN--PVKSMVMV 377
Cdd:cd06333 309 DALENTKGLVGVTGVYNFSpTDHNglDPDSLVMV 342
|
|
| PBP1_ABC_HAAT-like |
cd19988 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
37-330 |
2.01e-65 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380643 [Multi-domain] Cd Length: 302 Bit Score: 210.21 E-value: 2.01e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVKvngkSYKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd19988 1 KIGVFGPLSGDAAPYGQAMLQGAELAVEEINAAGGIL----GIPIELVVEDDEGLPAASVSAAKKLIYQDKVWAIIGSIN 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITLQKNgnvqPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFQDNSsDYGTG 196
Cdd:cd19988 77 SSCTLAAIRVALKAGVPQINPGSSAPTITESGN----PWVFRCTPDDRQQAYALVDYAFEKLKVTKIAVLYVND-DYGRG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 197 ITSAFKK---DFKGNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGIGDPKT 273
Cdd:cd19988 152 GIDAFKDaakKYGIEVVVEESYNRGDKDFSPQLEKIKDSGAQAIVMWGQYTEGALIAKQARELGLKQPLFGSDGLVTPKF 231
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1180510860 274 AEIAGnKNTSNVYYAAHFSVDAPATKVSApFAKAYKKAYGKYPSQFTALAYDSVRMI 330
Cdd:cd19988 232 IELAG-DAAEGAIATTPFLPDSDDPKVSA-FVEKYKKRYGEEPDVFAAQAYDAMNIL 286
|
|
| PBP1_ABC_ligand_binding-like |
cd19980 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
37-377 |
1.40e-61 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380635 [Multi-domain] Cd Length: 334 Bit Score: 201.30 E-value: 1.40e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVKvngkSYKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd19980 1 KIGVIAPLSGPVAALGQQVLNGAKLAVEEINAKGGVL----GRKLELVVEDDKCPPAEGVAAAKKLITDDKVPAIIGAWC 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITLQKNgnvqPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFQDNSsDYGTG 196
Cdd:cd19980 77 SSVTLAVMPVAERAKVPLVVEISSAPKITEGGN----PYVFRLNPTNSMLAKAFAKYLADKGKPKKVAFLAEND-DYGRG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 197 ITSAFKKDFK---GNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGIGDPKT 273
Cdd:cd19980 152 AAEAFKKALKakgVKVVATEYFDQGQTDFTTQLTKLKAANPDAIFVVAETEDGALILKQARELGLKQQLVGTGGTTSPDL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 274 AEIAGNKntSNVYYAAHFSVDAPATKVSAPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENENSTSKSAITKGLANLK 353
Cdd:cd19980 232 IKLAGDA--AEGVYGASIYAPTADNPANKAFVAAYKKKYGEPPDKFAALGYDAVMVIAEAIKKAGSTDPEKIRAAALKKV 309
|
330 340
....*....|....*....|....
gi 1180510860 354 NFDGVTGKMSIDKDHNPVKSMVMV 377
Cdd:cd19980 310 DYKGPGGTIKFDEKGQAHKNVVLV 333
|
|
| PBP1_ABC_HAAT-like |
cd19986 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
37-331 |
3.60e-59 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380641 [Multi-domain] Cd Length: 297 Bit Score: 194.00 E-value: 3.60e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd19986 1 KIGVVAPLTGPAALNGEYQKNGAQLALEEINAAGGV--LGR--PLELVVEDDQGTNTGAVNAVNKLISDDKVVAVIGPHY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMIsptAGADNITLQKNGNvqPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFQDNSsDYGTG 196
Cdd:cd19986 77 STQVLAVSPLVKEAKIPVI---TGGTSPKLTEQGN--PYMFRIRPSDSVSAKALAKYAVEELGAKKIAILYDND-DFGTG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 197 ITSAFKKDFKGN---VVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGIGDPKT 273
Cdd:cd19986 151 GADVVTAALKALglePVAVESYNTGDKDFTAQLLKLKNSGADVIIAWGHDAEAALIARQIRQLGLDVPVIGSSSFATPTV 230
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1180510860 274 AEIAGnKNTSNVYYAAHFSVDAPATKVSApFAKAYKKAYGKYPSQFTALAYDSVRMIK 331
Cdd:cd19986 231 LLLAG-EALEGIYSVTDFVPSDPDPKVQA-FVKKYKAKYGEDPDLYSAWYYDAMYLLA 286
|
|
| PBP1_ABC_ligand_binding-like |
cd06336 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
37-365 |
4.26e-58 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380559 [Multi-domain] Cd Length: 345 Bit Score: 192.83 E-value: 4.26e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVKVNGKSYKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd06336 1 KIGFLGPLSGPAAAWGLPMLRGLELAADEINAAGGIKVGGKKYKVEVVSYDDKYTPAEAVAAARRLVSQDGVKFIFGPGG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTpMISPTAGADNITLQKNgnvqPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFQDNSSdYGTG 196
Cdd:cd06336 81 SAIAAAVQPVTERNKV-LLLTAAFSDPILGPDN----PLLFRIPPTPYEYAPPFIKWLKKNGPIKTVALIAPNDA-TGKD 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 197 ITSAFKKDFK---GNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYY-TEGGAILKQMRDMGIDVPVIGPDGIGDPK 272
Cdd:cd06336 155 WAAAFVAAWKaagGEVVAEEFYDRGTTDFYPVLTKILALKPDALDLGGSSpGPAGLIIKQARELGFKGPFVSEGGAKADE 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 273 TAEIAGNKNTSNVYYAAHFSVDAPATKVSAPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENENSTS-KSAITKGLAN 351
Cdd:cd06336 235 ILKEVGGEAAEGFIGVLPADDDPIASPGAKAFVERYKKKYGEPPNSESALFYDAAYILVKAMEKAGTVDdTKKIRAALAM 314
|
330
....*....|....
gi 1180510860 352 LKNFDGVTGKMSID 365
Cdd:cd06336 315 LSPDETLFGKLKWG 328
|
|
| PBP1_ABC_ligand_binding-like |
cd06346 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
37-371 |
4.95e-58 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380569 [Multi-domain] Cd Length: 314 Bit Score: 191.62 E-value: 4.95e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd06346 1 KIGALLPLTGPLASLGPPMLAAAELAVEEINAAGGV--LGK--KVELVVEDSQTDPTAAVDAARKLVDVEGVPAIVGAAS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITLQKNGNvqpYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFQDNssDYGTG 196
Cdd:cd06346 77 SGVTLAVASVAVPNGVVQISPSSTSPALTTLEDKG---YVFRTAPSDALQGVVLAQLAAERGFKKVAVIYVNN--DYGQG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 197 ITSAFKKDFK---GNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGI-DVPVIGPDGIGDPK 272
Cdd:cd06346 152 LADAFKKAFEalgGTVTASVPYEPGQTSYRAELAQAAAGGPDALVLIGYPEDGATILREALELGLdFTPWIGTDGLKSDD 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 273 TAEIAGNKNTSNVYYAAHFSVDAPATKVsapFAKAYKKAYGKYPSQFTALAYDSVRMIkaaienenstsksaitkGLAnl 352
Cdd:cd06346 232 LVEAAGAEALEGMLGTAPGSPGSPAYEA---FAAAYKAEYGDDPGPFAANAYDAVMLL-----------------ALA-- 289
|
330
....*....|....*....
gi 1180510860 353 knFDGVTGKMSIDKDHNPV 371
Cdd:cd06346 290 --YEGASGPIDFDENGDVA 306
|
|
| PBP1_ABC_HAAT-like |
cd19981 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
37-330 |
4.41e-57 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380636 [Multi-domain] Cd Length: 297 Bit Score: 188.65 E-value: 4.41e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd19981 1 KIGFFAPLTGPAAADGKSALHGAELAVEQINAAGGI--NGK--KVELVVYDDQASPKQAVNIAQKLIEQDKVVAVVSGSY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITlqKNGnvqPYVFRAQYKNSFMGTKMAQFATETLKAKNI-VIFQDNssDYGT 195
Cdd:cd19981 77 SGPTRAAAPIFQEAKVPMVSAYAVHPDIT--KAG---DYVFRVAFLGPVQGRAGAEYAVKDLGAKKVaILTIDN--DFGK 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 196 GITSAFKK---DFKGNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGIGDPK 272
Cdd:cd19981 150 SLAAGFKEeakKLGAEIVSEYAYALGDRDFRPILTKIKSANPDAIYASGYYAEAAPIVKQARELGIKVPIIGQEGYDSPK 229
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1180510860 273 TAEIAGnKNTSNVYYAAHFSVDAPATKVSApFAKAYKKAYGKYPSQFTALAYDSVRMI 330
Cdd:cd19981 230 FIEIAG-SAAEGVIITTSLNRDSDRPITQK-FIKEYRKRYGIDPDMVAASTYDAVMVL 285
|
|
| PBP1_ABC_ligand_binding-like |
cd06338 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
37-382 |
1.25e-56 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380561 [Multi-domain] Cd Length: 347 Bit Score: 188.95 E-value: 1.25e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVKVNGKSYKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd06338 1 KIGASLSLTGPFAGEGKAQKRGYELWVEDVNAAGGVKGGGKKRPVELVYYDDQSDPATAVRLYEKLITEDKVDLLLGPYS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITLQKNgnvqPYVFRAQYKNSFMGTK-MAQFATETLKAKNIVIFQDNsSDYGT 195
Cdd:cd06338 81 SGLTLAAAPVAEKYGIPMIAGGAASDSIFERGY----KYVFGVLPPASDYAKGlLDLLAELGPKPKTVAIVYED-DPFGK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 196 GITSAFKKDFKG---NVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGIGDPK 272
Cdd:cd06338 156 EVAEGAREAAKKaglEVVYDESYPPGTTDFSPLLTKVKAANPDILLVGGYPPDAITLVRQMKELGYNPKAFFLTVGPAFP 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 273 TAEIAGNKNTSNVYYAAHFSVDAPATK--VSAPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENENSTSKSAITKGLA 350
Cdd:cd06338 236 AFREALGKDAEGVLGPSQWEPSLPYKVfpGAKEFVKAYKEKFGEEPSYHAAAAYAAGQVLQQAIEKAGSLDPEKVRDALA 315
|
330 340 350
....*....|....*....|....*....|...
gi 1180510860 351 NLkNFDGVTGKMSIDKD-HNPVKSMVMVGMTDG 382
Cdd:cd06338 316 SL-DFDTVYGPIKFDETgLQIGKPMVVVQWQGG 347
|
|
| PBP1_ABC_HAAT-like |
cd06344 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
36-377 |
1.47e-56 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380567 [Multi-domain] Cd Length: 332 Bit Score: 188.20 E-value: 1.47e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 36 IKIGGVFDTSGDASSYgkaeQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPv 115
Cdd:cd06344 2 IVIGVAWPFAPDGDLF----LEGVELAVEEINAAGGV--LGR--KIRLVEYDDEASVDKGLAIAQRFADNPDVVAVIGH- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 116 ITSGVqaAVPVAT---QGKTPMISPTAGADNITLQKNgnvqPYVFRAQYKNSFMGTKMAQFATEtLKAKNIVIFQDNSSd 192
Cdd:cd06344 73 RSSYV--AIPASIiyeRAGLLMLSPGATAPKLTQHGF----KYIFRNIPSDEDIARQLARYAAR-QGYKRIVIYYDDDS- 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 193 YGTGITSAFKKDFK---GNVVYVESYQEGTKDFQAVLTEIKDK-KFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGI 268
Cdd:cd06344 145 YGKGLANAFEEEARelgITIVDRRSYSSDEEDFRRLLSKWKALdFFDAIFLAGSMPEGAEFIKQARELGIKVPIIGGDGL 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 269 GDPKTAEIAGnKNTSNVYYAAHFSVDAPATKVSApFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENENSTSKSAITKG 348
Cdd:cd06344 225 DSPELIEIAG-KAAEGVVVATVFDPDDPRPEVRA-FVEAFRKKYGREPDVWAAQGYDAVKLLAEAIEKAGSTVPAKIASA 302
|
330 340 350
....*....|....*....|....*....|
gi 1180510860 349 LANLKNFDGVTGKMSIDKDHNPV-KSMVMV 377
Cdd:cd06344 303 LRFLENWEGVTGTYSFDANGDVVgKAIYFK 332
|
|
| PBP1_ABC_ligand_binding-like |
cd06335 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
37-382 |
4.66e-55 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380558 [Multi-domain] Cd Length: 348 Bit Score: 184.73 E-value: 4.66e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd06335 1 KIGVIGPLTGPSAELGESARRGVELAVEEINAAGGI--LGR--KIELVERDDEANPTKAVQNAQELIDKEKVVAIIGPTN 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITlQKNGNVQPYVFRAQYKNSFMGTKMAQFATETlKAKNIVIFQDnSSDYGTG 196
Cdd:cd06335 77 SGVALATIPILQEAKIPLIIPVATGTAIT-KPPAKPRNYIFRVAASDTLQADFLVDYAVKK-GFKKIAILHD-TTGYGQG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 197 ----ITSAFKKDFKgNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGIGDPK 272
Cdd:cd06335 154 glkdVEAALKKRGI-TPVATESFKIGDTDMTPQLLKAKDAGADVILVYGLGPDLAQILKAMEKLGWKVPLVGSWGLSMPN 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 273 TAEIAGNkNTSNVYYAAHFSVDaPATKVSAPFAKAYKKAYGKYP---SQFTALAYDSVRMIKAAIENENSTSKSAITKGL 349
Cdd:cd06335 233 FIELAGP-LAEGTIMTQTFIED-YLTPRAKKFIDAYKKKYGTDRipsPVSAAQGYDAVYLLAAAIKQAGSTDGKKIRAAL 310
|
330 340 350
....*....|....*....|....*....|....*...
gi 1180510860 350 ANLKNFDGVTGKMSI---DKDHN--PVKSMVMVGMTDG 382
Cdd:cd06335 311 ENLKGYVGGVKTYNKpfsKTDHEalDVSMVVLGYWKDG 348
|
|
| PBP1_ABC_ligand_binding-like |
cd06345 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
37-361 |
4.28e-52 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380568 [Multi-domain] Cd Length: 356 Bit Score: 177.46 E-value: 4.28e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSgdaSSYGKAEQDGANFAIKQINANGGVKvngkSYKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd06345 1 KIGVLGPLS---APAGEAMERGAELAVEEINAAGGIL----GRKVELVVADTQGKPEDGVAAAERLITEDKVDAIVGGFR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNIT--LQKNGNVQPYVFRAQYKNSFMGTKMAQFA----TETLKAKNIVIFQDNS 190
Cdd:cd06345 74 SEVVLAAMEVAAEYKVPFIVTGAASPAITkkVKKDYEKYKYVFRVGPNNSYLGATVAEFLkdllVEKLGFKKVAILAEDA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 191 sDYGTGITSAFKKDFKG---NVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDG 267
Cdd:cd06345 154 -AWGRGIAEALKKLLPEaglEVVGVERFPTGTTDFTPILSKIKASGADVIVTIFSGPGGILLVKQWAELGVPAPLVGINV 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 268 -IGDPKTAEIAGNKNTSNVYYAAhFSVDAPATKVSAPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENENSTSKSAIT 346
Cdd:cd06345 233 pAQDPEFWENTGGAGEYEITLAF-AAPKAKVTPKTKPFVDAYKKKYGEAPNYTAYTAYDAIYILAEAIERAGSTDPDALV 311
|
330
....*....|....*
gi 1180510860 347 KGLANLkNFDGVTGK 361
Cdd:cd06345 312 KALEKT-DYEGVRGR 325
|
|
| PBP1_ABC_ligand_binding-like |
cd06340 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
37-350 |
1.19e-49 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380563 [Multi-domain] Cd Length: 352 Bit Score: 170.82 E-value: 1.19e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVK-VNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPV 115
Cdd:cd06340 1 KIGVLYPLSGPLALIGQEAKRGAELAVDEINAAGGIKsLGGA--KIELVVADTQSDPEVAASEAERLITQEGVVAIIGAY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 116 ITSGVQAAVPVATQGKTPMISPTAGADNITLQKNgnvqPYVFRAQYKNSFMGTKMAQFATE-----TLKAKNIVIFQDNS 190
Cdd:cd06340 79 SSSVTLAASQVAERYGVPFVTASAVADEITERGF----KYVFRTAPTASQFAEDAVDFLKElakkkGKKIKKVAIIYEDS 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 191 sDYGTGITSAFKKDFKG---NVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVI-GPD 266
Cdd:cd06340 155 -AFGTSVAKGLKKAAKKaglEVVLDEPYPAGATDLSSEVLKLKAAKPDVVFATSYTNDAILLLRTMKELGFKPKAIiGVG 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 267 GIGDPKTAEIAGNKNTSNVYYAAHFSVDAPATK-VSAPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENENSTSKSAI 345
Cdd:cd06340 234 GGYSDPEFLKALGKDAEGVFSVVPWSPDLAKKKpGAKEVNERYKKKYGEDMTGHAARAYTAAWVLADALERAGSTDPEAI 313
|
....*
gi 1180510860 346 TKGLA 350
Cdd:cd06340 314 RAAAA 318
|
|
| Peripla_BP_6 |
pfam13458 |
Periplasmic binding protein; This family includes a diverse range of periplasmic binding ... |
36-377 |
1.50e-49 |
|
Periplasmic binding protein; This family includes a diverse range of periplasmic binding proteins.
Pssm-ID: 433225 [Multi-domain] Cd Length: 342 Bit Score: 170.15 E-value: 1.50e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 36 IKIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPV 115
Cdd:pfam13458 2 IKIGVLTPLSGPYASSGKSSRAGARAAIEEINAAGGV--NGR--KIELVVADDQGDPDVAAAAARRLVDQDGVDAIVGGV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 116 ITSGVQAAVPVATQGKTPMISPTAGAdnitlqkNGNVQPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFQDNSSdYGT 195
Cdd:pfam13458 78 SSAVALAVAEVLAKKGVPVIGPAALT-------GEKCSPYVFSLGPTYSAQATALGRYLAKELGGKKVALIGADYA-FGR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 196 GITSAFKKDFK---GNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGID---VPVIGPDgiG 269
Cdd:pfam13458 150 ALAAAAKAAAKaagGEVVGEVRYPLGTTDFSSQVLQIKASGADAVLLANAGADTVNLLKQAREAGLDakgIKLVGLG--G 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 270 DPKTAEIAGNKNTSNVYYAAHFSVDAPATKVSApFAKAYKKAYGK-YPSQFTALAYDSVRMIKAAIENENSTSKSAITKG 348
Cdd:pfam13458 228 DEPDLKALGGDAAEGVYATVPFFPDLDNPATRA-FVAAFAAKYGEaPPTQFAAGGYIAADLLLAALEAAGSPTREAVIAA 306
|
330 340 350
....*....|....*....|....*....|
gi 1180510860 349 LANLKnFDGVTGKMS-IDKDHNPVKSMVMV 377
Cdd:pfam13458 307 LRALP-YDGPFGPVGfRAEDHQAVHCMYLV 335
|
|
| PBP1_As_SBP-like |
cd06330 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
37-380 |
2.50e-47 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic (As) and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Pssm-ID: 380553 [Multi-domain] Cd Length: 342 Bit Score: 164.27 E-value: 2.50e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd06330 1 KIGVITPLSGAAAVYGEPARNGAELAVEEINAAGGI--LGR--KIELVVRDDKGKPDEAVRAARELVLQEGVDFLIGTIS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITLQKNgnvQPYVFRAQyKNSFMGTKMA--QFATETLKAKNIV-IFQDnsSDY 193
Cdd:cd06330 77 SGVALAVAPVAEELKVLFIATDAATDRLTEENF---NPYVFRTS-PNTYMDAVAAalYAAKKPPDVKRWAgIGPD--YEY 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 194 GTGITSAFK---KDFKGNVVYV-ESYQE-GTKDFQAVLTEIKDKKFDAIAINGYyteGG---AILKQMRDMGI--DVPVI 263
Cdd:cd06330 151 GRDSWAAFKaalKKLKPDVEVVgELWPKlGATDYTAYITALLAAKPDGVFSSLW---GGdlvTFVKQAKPYGLfdKTKVV 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 264 GPDGiGDPKTAEIAGNKNTSNVYYAAHFSVDAPATKVSAPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENENSTSKS 343
Cdd:cd06330 228 SGLG-GGSEVLQALGKEMPEGLIGGGRYPFGWPDTPLNKAFVEAYRAKYGEYPTYWAYEAYAAVMALKAAIEKAGSTDTD 306
|
330 340 350
....*....|....*....|....*....|....*...
gi 1180510860 344 AITKGLANLKnFDGVTGKMSIDK-DHNPVKSMVmVGMT 380
Cdd:cd06330 307 KVIAALEGLT-FDTPGGKITIRAeDHQAVQPVV-VGTT 342
|
|
| PBP1_ABC_ligand_binding-like |
cd06343 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
32-383 |
1.79e-46 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Pssm-ID: 380566 [Multi-domain] Cd Length: 355 Bit Score: 162.74 E-value: 1.79e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 32 TSNVIKIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAI 111
Cdd:cd06343 3 TDDEIKIGTSLPLSGPAAAYGKPVRAGAAAYFDEVNAAGGI--NGR--KIELIVEDDGYDPARAVAAVRKLVEQDKVFAI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 112 VGPVITSGVQAAVPVATQGKTPMISPTAGADNITLQKNgnvqPYVFRAQYKNSFMGTKMAQFATETLKAKNI-VIFQDNs 190
Cdd:cd06343 79 VGGLGTPTNLAVRPYLNEAGVPQLFPATGASALSPPPK----PYTFGVQPSYEDEGRILADYIVETLPAAKVaVLYQND- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 191 sDYGTGITSAFKKDFKGN---VVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDG 267
Cdd:cd06343 154 -DFGKDGLEGLKEALKAYgleVVAEETYEPGDTDFSSQVLKLKAAGADVVVLGTLPKEAAAALKEAAKLGWKPTFLGSSV 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 268 IGDPKTAEIAGNKNTSNVYYAAHFsvdAPATKVSAPFAKAYKKAYGKY-----PSQFTALAYDSVRMIKAAIEN--ENST 340
Cdd:cd06343 233 SADPTTLAKAGGDAAEGVYSASYL---KDPTDADDPAVKEFREAYKKYfpddpPNAYALYGYAAAQVFVEALKRagKDLT 309
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1180510860 341 SKSaITKGLANLKNFD--GVTGKMSIDK-DHNPVKSMVMVGMTDGK 383
Cdd:cd06343 310 REG-LIKALESLKDFDdgGPGPPVTFSPdDHRGIESMYLVQVDGGK 354
|
|
| PBP1_aromatic_compounds-like |
cd06332 |
type 1 periplasmic binding proteins of active transport systems predicted to be involved in ... |
37-374 |
1.83e-42 |
|
type 1 periplasmic binding proteins of active transport systems predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; This group includes the type 1 periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Pssm-ID: 380555 [Multi-domain] Cd Length: 336 Bit Score: 151.60 E-value: 1.83e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINAnggvKVNGKSYKFNIINKDAKTDNTETAsvTSSLINKEKVSAIVGPVI 116
Cdd:cd06332 1 KIGLLAPLTGPFAALGEDMVRGFELALEEVGG----EVAGRKVELVVEDDAGDPDTAVTK--ARKLVEQDKVDVLIGPLS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITLQKNGnvqPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFqdnSSDYGTG 196
Cdd:cd06332 75 GDEGLAVAPYAKEPGVPFINPVAGADDLTQRAKA---PNFFRTSFTGSQWSAPLGDYAYKELGYKKVATI---GSDYAFG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 197 ITSA--FKKDFK---GNVVYVESYQEGTKDFQAVLTEIKDKKfDAIaingYYTEGGA----ILKQMRDMGID--VPVIGP 265
Cdd:cd06332 149 YEQAagFKRGFEaagGEVVQEIWVPLGTTDFSPYIAQIPSAD-DAV----FAFLGGAdavrFLKQYREFGLKdkIPLIGG 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 266 DGIGD----PKTAEIAGNKNTSNVYYAAHfsvDAPATKvsaPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENEN--S 339
Cdd:cd06332 224 GTTVDesvlPAMGDAALGIISASHYAEGL---DNPENK---KFVAAYKKKFGKLPSLYAAGGYDGAQAILEALEAVGgdV 297
|
330 340 350
....*....|....*....|....*....|....*
gi 1180510860 340 TSKSAITKGLANLKnFDGVTGKMSIDKDHNPVKSM 374
Cdd:cd06332 298 SDKQALAAALRKVK-FDSPRGPFSFDENRNPVQNV 331
|
|
| PBP1_ABC_ligand_binding-like |
cd19982 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
37-331 |
9.96e-40 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380637 [Multi-domain] Cd Length: 302 Bit Score: 143.19 E-value: 9.96e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVKvnGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd19982 1 KIGAILSLTGPFAPFGEMFKNGYEMALEEINAAGGIK--GK--KLELVIEDDQSKPQTALAAAEKLVSQDKVPLIVGGYS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITLQKngnvQPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFQDNsSDYGTG 196
Cdd:cd19982 77 SGITLPVAAVAERQKIPLLVPTAADDDITKPG----YKYVFRLNPPASIYAKALFDFFKELVKPKTIAILYEN-TAFGTS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 197 ITSAFKKDFKGN---VVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVP--VIGPDGIGDP 271
Cdd:cd19982 152 VAKAARRFAKKRgieVVADESYDKGATDFKPLLNKVKAANPDVVYMVSYLNDAILLMRQAKELGLNPKlfAGGGAGFTIP 231
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 272 KTAEIAGnKNTSNVYYAAHFSVDAPATKVSApFAKAYKKAYGKYPSQFTALAYDSVRMIK 331
Cdd:cd19982 232 EFLKQAG-PLAEYVVTATLWSPDVKYPGAKE-FYEKYKAKYGVEPSYHEAEAYAALYVAA 289
|
|
| PBP1_AmiC-like |
cd06331 |
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system ... |
37-371 |
2.40e-38 |
|
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF); This group includes the type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380554 [Multi-domain] Cd Length: 333 Bit Score: 140.43 E-value: 2.40e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd06331 1 KIGLLTPLSGPASVYGRAIANGAELAVEEINAAGGV--LGR--PVELVVEDDASDPATAVAAARRLIQQDKVDAIVGPIT 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGAdnitlqknGNVQ-PYVFR-----AQYKNSFMGTKMAQFAtetlkaKNIVIFqdnS 190
Cdd:cd06331 77 SATRNAVAPVAERAKVPLLYPTFYE--------GGECsPYLFCfgevpNQQLDPLIPWLMEEYG------KKFYLI---G 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 191 SDY--GTGITSAFKK---DFKGNVVYVESYQEGTKDFQAVLTEIKDKKFDAI--AINGyyTEGGAILKQMRDMGID--VP 261
Cdd:cd06331 140 SDYvwPRTMNDAARRvieAHGGEVVGEEYLPLGTTDFSSVIEKIKASGADVVlsTLVG--ADAVTFLKQFAAAGLRrkVR 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 262 VIGPDGigDPKTAEIAGNKNTSNVYYAAHF--SVDAPATKvsaPFAKAYKKAYGK---YPSQFTALAYDSVRMIKAAIEN 336
Cdd:cd06331 218 IAALLF--DENTLAGLGAEAAEGIYSVLSYfqSLDTPENK---AFVAAYRKKFGEdapPITSLSEAAYEAVHLYAAAVEK 292
|
330 340 350
....*....|....*....|....*....|....*
gi 1180510860 337 ENSTSKSAITKGLANLKnFDGVTGKMSIDKDHNPV 371
Cdd:cd06331 293 AGSTDPEAVIAALPGVS-FDGPQGPVTMDPDNHHV 326
|
|
| PBP1_RPA0668_benzoate-like |
cd20014 |
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the ... |
37-371 |
5.84e-38 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0668 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0668 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380667 [Multi-domain] Cd Length: 346 Bit Score: 139.68 E-value: 5.84e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQinaNGGvKVNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd20014 1 KIGLLLPYSGVYAALGEDIRNGFQLYLDE---HGG-KLGGR--PIELVKEDDEADPDVALQKARKLIEQDKVDVLVGPVS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITLQKNGnvqPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIfqdnSSDYGTG 196
Cdd:cd20014 75 SGVALAIRDVVEQAKVPLIVANAGANALTRAACS---PYIFRTSFSNWQLGYALGKYAAENVGKTVVTI----ASDYAAG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 197 --ITSAFKKDFK---GNVVYVESYQEG-TKDFQAVLTEIKDKKFDAIAinGYYTEGGAI--LKQMRDMGID--VPVIGPD 266
Cdd:cd20014 148 reVVAGFKEGFEaagGKVVGEIWTPLGtTTDFSPYLTQIAASGPDAVY--AFFAGADAVrfVKQYAEFGLKgkIPLYGPG 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 267 GIGDPKTAEIAGnKNTSNVYYAAHFS--VDAPATKvsaPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIE--NENSTSK 342
Cdd:cd20014 226 FLTDEDVLPALG-EAAEGIITVLHYAptLDNPANR---AFVAAYQAKYGRLPDVYAVQGYDAAQVIDAALEavGGDTSDK 301
|
330 340 350
....*....|....*....|....*....|
gi 1180510860 343 SAITKGLANLKnFDGVTGKMSIDKD-HNPV 371
Cdd:cd20014 302 DILAAALELGS-IDSPRGPFRFDPTtHNPI 330
|
|
| PBP1_SBP-like |
cd19989 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
37-331 |
2.43e-37 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380644 [Multi-domain] Cd Length: 299 Bit Score: 137.02 E-value: 2.43e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd19989 1 KIGVLTPLSGPYAALGEEARRGAQLAVEEINAAGGI--LGR--PVELVVEDTEGKPATAVQKARKLVEQDGVDFLTGAVS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITLqKNGNvqPYVFRAQYKNSFMGTKMAQFATEtLKAKNIVIFqdnSSDY--G 194
Cdd:cd19989 77 SAVALAVAPKAAELKVPYLVTVAADDELTG-ENCN--RYTFRVNTSDRMIARALAPWLAE-NGGKKWYIV---YADYawG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 195 TGITSAFKKDFK---GNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMG--IDVPVIGPDGIG 269
Cdd:cd19989 150 QSSAEAFKEAIEelgGEVVGTLFAPLGTTDFSSYITQISDSGADGLLLALAGSDAVNFLKQAGQFGlgKKYKIVGGILSI 229
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1180510860 270 DPKTAEIAGnKNTSNVYYAAHFSVDAPaTKVSAPFAKAYKKAYGKYPSQFTALAYDSVRMIK 331
Cdd:cd19989 230 EPLALPALG-DAAEGVYGGVRYPPTLD-TPANRAFVEAYEKEYGEAPDNFAGEAYEAMQALA 289
|
|
| PRK15404 |
PRK15404 |
high-affinity branched-chain amino acid ABC transporter substrate-binding protein; |
13-366 |
1.31e-35 |
|
high-affinity branched-chain amino acid ABC transporter substrate-binding protein;
Pssm-ID: 237959 [Multi-domain] Cd Length: 369 Bit Score: 133.99 E-value: 1.31e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 13 VAIGGIVAFGVvnksSKASTSNVIKIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDN 92
Cdd:PRK15404 7 TLLAGCIALAL----SHAALADDIKIAIVGPMSGPVAQYGDMEFTGARQAIEDINAKGGI--KGD--KLEGVEYDDACDP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 93 TETASVTSSLINkEKVSAIVGPVITSGVQAAVPVATQGKTPMISPTAGADNITLQKngnvQPYVFRAQYKNSFMGTKMAQ 172
Cdd:PRK15404 79 KQAVAVANKVVN-DGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARG----YQLIFRTIGLDSDQGPTAAK 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 173 FATETLKAKNIVIFQDNSSdYGTGITSAFKKDFK---GNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAI 249
Cdd:PRK15404 154 YILEKVKPKRIAVLHDKQQ-YGEGLARSVKDGLKkagANVVFFEGITAGDKDFSALIAKLKKENVDFVYYGGYHPEMGQI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 250 LKQMRDMGIDVPVIGPDGIGDPKTAEIAGNKNTSN-VYYAAHFSVDaPATKvsaPFAKAYkKAYGKYPS-QFTALAYDSV 327
Cdd:PRK15404 233 LRQAREAGLKTQFMGPEGVGNKSLSNIAGPASEGMlVTLPKRYDQD-PANK---AIVDAF-KAKKQDPSgPFVWTTYAAV 307
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1180510860 328 RMIKAAIENENSTSKSAITKGL-ANlkNFDGVTGKMSIDK 366
Cdd:PRK15404 308 QSLAAGINRAGSDDPAKVAKYLkAN--TFDTVIGPLSWDE 345
|
|
| PBP1_SBP-like |
cd06328 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
37-374 |
1.47e-34 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380551 [Multi-domain] Cd Length: 336 Bit Score: 130.50 E-value: 1.47e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQInANGGVKVNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVi 116
Cdd:cd06328 1 KIGVITSLTGPLAAYGKQTERGFELGLEYA-TDGTMEVDGR--KIEVIVKDDQGDPDTAKAAATELIGDDGVDILVGTV- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAV-PVATQGKTPMISPTAGADNITlQKNGNvqPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFQDNSsdYGT 195
Cdd:cd06328 77 SSAVALALaPVAEQNKKILIVGPAAADSIT-GENWN--KYTFRTSRNSWQDAIAGAKALADPLGKSVAFLAQDYA--FGQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 196 GITSAFKK---DFKGNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGIGDPK 272
Cdd:cd06328 152 DGVAAFKKaleAKGGKIVGEELVPVTTTDFTPYLQRILDAKPDVLFVAWAGTGALTLWQQLADQGVLDDIKVVTGGPDIA 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 273 TAEIAGnKNTSNVYYAAHFSVDAPATKVSAPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENENSTSKS-AITKGLAN 351
Cdd:cd06328 232 TLAALG-DALPGIEGLTYYYYGLPKNPVNDWLVKAHKERYNAPPDLFTAGGFAAAQAVVRALEKAGGDTDVeKLIAALEG 310
|
330 340
....*....|....*....|....
gi 1180510860 352 LKnFDGVTGKMSIDK-DHNPVKSM 374
Cdd:cd06328 311 LT-FETPKGKMTIRAeDHQALQPM 333
|
|
| PBP1_ABC_HAAT-like |
cd19985 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
45-330 |
1.91e-34 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380640 [Multi-domain] Cd Length: 321 Bit Score: 129.70 E-value: 1.91e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 45 SGDASSYGKAEQDGANFAIKQINANGGVkvNGKSYKFNIINKDAKTDNTETASVTsslINKEKVSAIVGPVITSGVQAAV 124
Cdd:cd19985 9 SGKSASKGKSMLRGAELYIDQINAAGGI--NGKKVKLDVFDDQNDPDAARKAAQI---IVSDKALAVIGHYYSSASIAAG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 125 PVATQGKTPMISPTAGADNITLQkngnvQPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFQDNSSdYGTGITSAFKKD 204
Cdd:cd19985 84 KIYKKAGIPAITPSATADAVTRD-----NPWYFRVIFNDSLQGRFLANYAKKVLKKDKVSIIYEEDS-YGKSLASVFEAT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 205 FK---GNVVYVESYQEGTKDFQAVL----TEIKD--KKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGIGDPKTAE 275
Cdd:cd19985 158 ARalgLKVLKKWSFDTDSSQLDQNLdqivDELKKapDEPGVIFLATHADEGAKLIKKLRDAGLKAPIIGPDSLASESFAQ 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1180510860 276 IAGNKN---------TSNVYYAAHFSVDAPATKVSApFAKAYKKAYGKYPSQFTALAYDSVRMI 330
Cdd:cd19985 238 GFAEYPeekeepgyyTDGIYATSPFIFDIANEKAQK-FRDTYQKRYGEEPSWIAAFAYDAAMLA 300
|
|
| PBP1_Nba-like |
cd06359 |
type 1 periplasmic binding component of active transport systems predicted to be involved in ... |
37-375 |
9.52e-34 |
|
type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway; This group includes the type 1 periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Pssm-ID: 380582 [Multi-domain] Cd Length: 333 Bit Score: 128.14 E-value: 9.52e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINAN-GGVKVNgksykfnIINKDAKTDNTETASVTSSLINKEKVSAIVGPV 115
Cdd:cd06359 1 KIGFITTLSGPAAVLGQDMRDGFNLALEQLGGKlGGLPVE-------VVVEDDQLKPDVAKQAAERLIERDKVDFVTGII 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 116 ITSGVQAAVPVATQGKTPMISPTAGADNITLQKngnVQPYVFRAQYKNSFMGTKMAQFATETlKAKNIVIFqdnSSDYGT 195
Cdd:cd06359 74 FSNVMLAVVKPVVDSKVFYISANAGPSDLAGKG---CNPNFFVTSWQNDQLHEAAGKYANDK-GYKRVYLL---APNYQA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 196 G--ITSAFKKDFKGNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAIngYYTEGGAI--LKQMRDMGI--DVPVIGPDGIG 269
Cdd:cd06359 147 GkdALAGFKRTYKGEVVGEIYTPLGQLDFSAELAQIRAAKPDAVFA--FYPGGMGVnfVKQYAQAGLkkKIPLYTVGTLD 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 270 DPKTAEIAGNkNTSNVYYAAHFSVDAPaTKVSAPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIE--NENSTSKSAITK 347
Cdd:cd06359 225 DEDLLPAMGD-AALGVLSVSQWSPDLD-NPENKRFVAAFRKKYGRPPSNYAAQGYDAALLIDAAVKavGGDLSDKDALRA 302
|
330 340
....*....|....*....|....*...
gi 1180510860 348 GLANlKNFDGVTGKMSIDKDHNPVKSMV 375
Cdd:cd06359 303 ALRK-ADFKSVRGAFRFNNNQFPIQDFY 329
|
|
| PBP1_YraM_LppC_lipoprotein-like |
cd06339 |
periplasmic binding component of lipoprotein LppC, an immunodominant antigen; This subgroup ... |
45-368 |
5.54e-33 |
|
periplasmic binding component of lipoprotein LppC, an immunodominant antigen; This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Pssm-ID: 380562 [Multi-domain] Cd Length: 331 Bit Score: 125.85 E-value: 5.54e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 45 SGDASSYGKAEQDGANFAIKQINANggvkvngksyKFNIINKDakTDNTETASVTSSLINKEKVSAIVGPVITSGVQAAV 124
Cdd:cd06339 9 SGPYAAAGQAIRDGIELALFDAGGS----------RPELRVYD--TGGPEGAAAAYQQAVAEGADLIIGPLLKSSVAALA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 125 PVATQGKTPMISPTAGADNITlqkngnvQPYVFRaqykNSFM----GTKMAQFATETLKAKNIVIFQDNSsdYGTGITSA 200
Cdd:cd06339 77 AAAQALGVPVLALNNDESATA-------GPGLFQ----FGLSpedeARQAARYAVQQGLRRFAVLAPDNA--YGQRVANA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 201 FKKDFK---GNVVYVESYQEGTKDFQAVLTEIKD----------------------KKFDAIAINGYYTEGGAILKQMRD 255
Cdd:cd06339 144 FREAWQalgGTVVAVESYDPDETDFSAAIRRLLGvdqsearirqlgellefeprrrQDFDAIFLPAGPEQARLIAPQLAF 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 256 MGI-DVPVIGPDGIGDPKTAeIAGNKNTSNVYYAahfsvDAPATKVSAPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAI 334
Cdd:cd06339 224 YGAgDVPLLGTSLWYSGKLN-LLRDPDLNGAWFA-----DPPWLLSPRAFPLRYRLAYGWPPPRLAALGYDAYRLAARLA 297
|
330 340 350
....*....|....*....|....*....|....
gi 1180510860 335 ENENstsksaitkGLANLKNFDGVTGKMSIDKDH 368
Cdd:cd06339 298 RLGG---------GLTPGAGFSGLTGLLRLDPDG 322
|
|
| PBP1_ABC_ligand_binding-like |
cd19978 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
36-369 |
6.23e-31 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in the uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380633 [Multi-domain] Cd Length: 341 Bit Score: 120.76 E-value: 6.23e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 36 IKIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGksYKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPV 115
Cdd:cd19978 1 IRLGMSAALSGPAAELGNEMKRGIEAAFNEVNAQGGV--NG--RKIKLIALDDGYEPDRTVKNTKKLIEEDKVFALIGYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 116 ITSGVQAAVPVATQGKTPMISPTAGADniTLQKngNVQPYVF--RAQYKNSFmgTKMAQFATETLKAKNIVIF-QDNSsd 192
Cdd:cd19978 77 GTPTALAALPLANEKKIPLFGPFTGAE--FLRT--PFLPYVFnlRASYADET--EALVDYLVKTLGPKRIAIFyQNDA-- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 193 YGTGITSAFKK--DFKGNVVYVE-SYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGIG 269
Cdd:cd19978 149 FGLAGLEGAKKalKKRGLTPVAEgSYTRNTLDVEEALAKILKAKPEAIILVGTYAPAAEFIRLARAAGLNPLFANVSFVG 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 270 DPKTAEiAGNKNTSNVYYAahfSVDAPATKVSAPFAKAYKKAYGKYpsqFTALAYDSV--------RMIKAAIEN-ENST 340
Cdd:cd19978 229 SEALAL-ELGDYGEGVIVS---QVVPDPNDSSLPIVKEYREAMKKY---GPNAPPDFVslegylaaRLLVEALKKaGPPL 301
|
330 340
....*....|....*....|....*....
gi 1180510860 341 SKSAITKGLANLKNFDGVTGKMSIDKDHN 369
Cdd:cd19978 302 TREKLLALEESLKNDLGKGLTLTFSPNDH 330
|
|
| PBP1_RPA0985_benzoate-like |
cd20013 |
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the ... |
37-367 |
7.10e-31 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0985 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0985 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380666 [Multi-domain] Cd Length: 356 Bit Score: 120.82 E-value: 7.10e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQinaNGGvKVNGKsyKFNIINKDAKTDNTETA-SVTSSLINKEKVSAIVGPV 115
Cdd:cd20013 1 KVGVIGPFSGPFADYGKQFDRGIDLYLKL---HGD-KVGGR--KVEVIYRDDGGPNPAVAkRLAQELIVRDKVQILIGFG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 116 ITSGVQAAVPVATQGKTPMISPTAGADNITlqkngNVQPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFqdnsSDYGT 195
Cdd:cd20013 75 FTPNALAVAPVATEAKTPTVIMNAATSSIT-----RKSPYFVRTSFTMWQVAYPMGKWAAKNGIKKAYTAV----ADYAP 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 196 GI--TSAFKKDFK---GNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAIngyYTEGG----AILKQMRDMGID---VPVI 263
Cdd:cd20013 146 GHdaETAFKKAFEaagGKIVGSIRVPLATPDFAPFMQRIKDAKPDAVFV---FVPAGapsiGFLKAYAERGLKeagIKLL 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 264 GPDGIGDPKTAEIAGNKN----TSNVYYAAHfsvDAPATKvsaPFAKAYKKAYGK--YPSQFTALAYDSVRMIKAAIENE 337
Cdd:cd20013 223 GTGDATDDDDLPAMGDAAlgliTAGHYSAAL---DSPENK---AFVAAYQKAYGPdaRPDFMAVAAYDGMALIYKMIKAT 296
|
330 340 350
....*....|....*....|....*....|
gi 1180510860 338 NSTSKSAITKGLANLKNFDGVTGKMSIDKD 367
Cdd:cd20013 297 GGKFDGDKAMAAVKGLKWESPRGPISIDPE 326
|
|
| PBP1_ABC_HAAT-like |
cd19983 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
37-328 |
1.26e-29 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380638 [Multi-domain] Cd Length: 303 Bit Score: 116.14 E-value: 1.26e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDnTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd19983 1 RIGFVGGLTGRYSDLGVQGRNGAQLAVEEINAAGGI--NGR--PVELIIRDDQQD-PEAAKAADRELIAGGVVAIIGHMT 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITLQKNgnvqpYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFQDNSSD-YGT 195
Cdd:cd19983 76 SAMTVAVLPVINEAKVLMISPTVSTPELSGKDD-----YFFRVTPTTRESAQALARYAYNRGGLRRVAVIYDLSNRaYSE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 196 GITSAFKKDF---KGNVVYVESYQEGTK-DFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGIGDP 271
Cdd:cd19983 151 SWLDNFRSEFealGGRIVAEIPFSSGADvDFSDLARRLLASKPDGLLLVASAVDTAMLAQQIRKLGSKIPLFSSAWAATE 230
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1180510860 272 KTAEIAGnKNTSNVYYAAHFSVDAPaTKVSAPFAKAYKKAYGKYPSQFTALAYDSVR 328
Cdd:cd19983 231 ELLELGG-KAVEGMLFSQAYDRNSS-NPRYLAFKEAYEERFGREPSFAAAYAYEAAM 285
|
|
| PBP1_alkylbenzenes-like |
cd06360 |
type 1 periplasmic binding component of active transport systems predicted be involved in ... |
37-383 |
5.28e-27 |
|
type 1 periplasmic binding component of active transport systems predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; This group includes the type 1 periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Pssm-ID: 380583 [Multi-domain] Cd Length: 357 Bit Score: 110.08 E-value: 5.28e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQInangGVKVNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd06360 1 KIGVLLPLTGPLAVNGEDVRDGFELYFDEI----GNQVAGR--KIELIVEDDEGKPDVGLTKARKLVERDKVHVLAGIVS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGADNITLQKNgnvQPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFqdnSSDYGTG 196
Cdd:cd06360 75 SAVAYAVRDYVVEQKIPLVISNAGAAPLTQELA---SPYIFRTSFSNGQYDAPFGQYAYEKLGYRRIAVM---ASDYAAG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 197 --ITSAFKKDFK---GNVVyvesyQE-----GTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGID--VPVIG 264
Cdd:cd06360 149 heQAGAFARTFKqagGKVV-----QEiypplGTADFAPYLARIQQDAADAVWAFFAGADAIRFVKQYDEYGLKgkLPLVG 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 265 PDGIGDPKTAEIAGNKNTSnVYYAAHFS--VDAPATKvsaPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIE--NENST 340
Cdd:cd06360 224 IGGLVDDAILPEQGDAALG-IVSYLHYSaaLDTPENK---AFVQAYRKKYGRDPGLYAEGGYVAARAIAEALEavKGNVE 299
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1180510860 341 SKSAITKGLANLKnFDGVTGKMSIDKDHNPVKSMVM--VGMTDGK 383
Cdd:cd06360 300 DKEAFLEALRKVR-FEAPRGPFRFDPYQQAVVTTYIrrVEKVDGK 343
|
|
| PBP1_ABC_ligand_binding-like |
cd19979 |
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes ... |
37-358 |
8.57e-24 |
|
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380634 [Multi-domain] Cd Length: 350 Bit Score: 101.15 E-value: 8.57e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKT------DNTEtasvtsSLINKEKVSA 110
Cdd:cd19979 1 VIGLDADLSGGSAASGEAIKRGIQLAIDEINAAGGL--LGR--KLELVAKDHRGnpargvDNLR------EFAADPDVLA 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 111 IVG----PVITsgvqAAVPVATQGKTPMISPTAGADNITlqKNGNVQPYVFRAQYKNSFMGTKMAQFATETlKAKNIVIF 186
Cdd:cd19979 71 VFGglhsPVLL----AELDFIHELKIPYLVPWAAATPIT--RNGYSPNYIFRLSVDDSLAGPFLVEYALKK-GCKRPALL 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 187 QDNSsDYG----TGITSAFKKdfKGNV-VYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVP 261
Cdd:cd19979 144 LENT-GWGrsnlKAMTKALAK--KGLQpVGVEWFNWGDTDAKPQLRALKAAGADAILLVANAPEGAAIVKALAALPERLP 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 262 VIGPDGI-GDPKTAEIAGNKNTSNVYYAAHFS-VDAPATKVSAPFAKAYKKAYGKYPSQF-------TALAYDSVRMIKA 332
Cdd:cd19979 221 IISHWGItGGDFPELPREALSKIDLRFIQTFSfFDANQSPRGKQVLARYKRRYPVEDPESdipapvgFAHAYDLTHLLAL 300
|
330 340
....*....|....*....|....*.
gi 1180510860 333 AIENENSTSKSAITKGLANLKNFDGV 358
Cdd:cd19979 301 AIEQAGSTDRAAVRAALELLPPHEGL 326
|
|
| PBP1_ABC_ligand_binding-like |
cd06326 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
36-356 |
6.37e-23 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380549 [Multi-domain] Cd Length: 339 Bit Score: 98.38 E-value: 6.37e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 36 IKIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPV 115
Cdd:cd06326 1 IVIGQSAPLSGPLAELGREYLAGAKAYFDQVNAAGGI--NGR--KIRLVTLDDGYDPARTVENTRQLIEQDKVVALFGYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 116 ITSGVQAAVPVATQGKTPMISPTAGADniTLQKNGNvqPYVF--RAQYKNSFMgtKMAQFATeTLKAKNI-VIFQDNSsd 192
Cdd:cd06326 77 GTANVEAVLPLLEEAGVPLVGPLTGAD--SLREPGN--PYVFhvRASYADEVE--KIVRHLA-TLGLKRIaVVYQDDP-- 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 193 YGTGITSAFK---KDFKGNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGIG 269
Cdd:cd06326 148 FGKEGLAAAEaalAARGLEPVATAAVARNAADVAAAAAALAAAKPQAVVLIAAGKAAAAFIKALRAAGGAAQFYGLSVVG 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 270 DPKTAEIAGNKntsnvyyAAHFSV-------DAPATKVSAPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIEN--ENST 340
Cdd:cd06326 228 AAALAKALGDA-------ARGVVVsqvvpnpWSTTLPLVREYQAAMKAAGPKEPSYASLEGYIAARVLVEALRRagRNPT 300
|
330
....*....|....*.
gi 1180510860 341 SKSAITkGLANLKNFD 356
Cdd:cd06326 301 RESLVA-ALESLGRLD 315
|
|
| PBP1_amide_urea_BP-like |
cd06356 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
37-369 |
1.14e-22 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the type 1 periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Pssm-ID: 380579 [Multi-domain] Cd Length: 334 Bit Score: 97.37 E-value: 1.14e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGvkVNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd06356 1 KIGSIFDLSGGLNIYGKPMVHAMKLAVEEINAAGG--LLGR--QIELVAYDTQSDMQKYTQYAQQLILRDKVDVVFGGIT 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTpmisptagadnitlqkngnvqPYVFRAQY------KNSF-MGTKMAQ-------FATETLKAKN 182
Cdd:cd06356 77 SASREAIRPILRRNKI---------------------LYFYNTQYeggvcdKNTFcTGSTPEQqvsplieWAIKKYGKKV 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 183 IVIfqdnSSDYGTGITSA-----FKKDFKGNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMG 257
Cdd:cd06356 136 YII----AADYNFGQISAdwvkkYAKKNGGEVVGEEFFPLDVTDFGPTIQKIQAAKPDFVVSLLVGGNHISFYRQWAAAG 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 258 IDvpvigpDGIGDPKTAEIAGN-------KNTSNVYYAAHF--SVDAPAtkvSAPFAKAYKKAYGKYP--SQFTALAYDS 326
Cdd:cd06356 212 LK------KKIPIVSTVFGAGNehkvlspPELEGMYVSYSYfeELDTPA---NKAFVAKWRAKYGDEPyiNQEAVGVYNA 282
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1180510860 327 VRMIKAAIENENSTSKSAITKGLANLKNFDGVTGKMSID-KDHN 369
Cdd:cd06356 283 VYLWAEAVEKAGSTEREAVIAALESGISFDGPSGTVTVDpKSHH 326
|
|
| ANF_receptor |
pfam01094 |
Receptor family ligand binding region; This family includes extracellular ligand binding ... |
54-381 |
3.83e-22 |
|
Receptor family ligand binding region; This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure.
Pssm-ID: 460062 [Multi-domain] Cd Length: 347 Bit Score: 96.30 E-value: 3.83e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 54 AEQDGANFAIKQINANGGVKvngKSYKFNIINKDAKTDNTETASVTSSLINKeKVSAIVGPVITSGVQAAVPVATQGKTP 133
Cdd:pfam01094 1 LVLLAVRLAVEDINADPGLL---PGTKLEYIILDTCCDPSLALAAALDLLKG-EVVAIIGPSCSSVASAVASLANEWKVP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 134 MISPTAGADNITlqkNGNVQPYVFRAQYKNSFMGTKMAQFAtETLKAKNIVIFQDNsSDYGTGITSAFKKDFK---GNVV 210
Cdd:pfam01094 77 LISYGSTSPALS---DLNRYPTFLRTTPSDTSQADAIVDIL-KHFGWKRVALIYSD-DDYGESGLQALEDALRergIRVA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 211 YVESY---QEGTKDFQAVLTEIKdKKFDAIAINGYYTEGGAILKQMRDMGIDVP---VIGPDGIG-DPKTAEIAGNKNTS 283
Cdd:pfam01094 152 YKAVIppaQDDDEIARKLLKEVK-SRARVIVVCCSSETARRLLKAARELGMMGEgyvWIATDGLTtSLVILNPSTLEAAG 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 284 NVYYAAHFSVDAP----ATKVSAPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENENSTSKSAITKG----------- 348
Cdd:pfam01094 231 GVLGFRLHPPDSPefseFFWEKLSDEKELYENLGGLPVSYGALAYDAVYLLAHALHNLLRDDKPGRACGalgpwnggqkl 310
|
330 340 350
....*....|....*....|....*....|....*.
gi 1180510860 349 LANLK--NFDGVTGKMSIDKD-HNPVKSMVMVGMTD 381
Cdd:pfam01094 311 LRYLKnvNFTGLTGNVQFDENgDRINPDYDILNLNG 346
|
|
| PBP1_SBP-like |
cd19987 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
37-335 |
8.46e-19 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380642 [Multi-domain] Cd Length: 353 Bit Score: 86.61 E-value: 8.46e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGG-VKVNGKSYKFNIINK-------DAKTD-NTETASVTSsLINKEK 107
Cdd:cd19987 1 TIGLNVPLSGPYAPQGEDQRRGFELAVDHLNNGGGlVDKDSRLSGDGILGKkvelvtaDTETKaDTAVDNAKR-LIEQDG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 108 VSAIVGPVITSGVQAAVPVATQGKTPMISPTAGADNITlQKNGNvqPYVFRaQYKNSFMGTK-MAQFATETL--KAKNIV 184
Cdd:cd19987 80 AVMITGGSSSAVAVAAQKLAQKEGVLYFAGLSHSNDTT-GKDCH--RYGFR-ECFNAHMSAKaLAPYLVEKFgkDRKYFY 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 185 IFQDnsSDYGTGITSAFKKDFK---GNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGI--D 259
Cdd:cd19987 156 LTAD--YTWGHSTEQSMREYTEahgWKTVGNPATPLGETDFSAALLNAADSGADVLVLVLFGRDMVNALKQAKQFGLlkK 233
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1180510860 260 VPVIGPdgIGDPKTAEIAGNKNTSNVYYAA--HFSVDAPATKVSApFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIE 335
Cdd:cd19987 234 MDIVVP--LLTAFMAESVGPEIMEGVLGTVnwHWSLPDDYSYAFG-KAEAFEKEYGAYPSQAAASAYVQVLQYAAAVE 308
|
|
| PBP1_AmiC |
cd06357 |
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding ... |
37-369 |
1.53e-18 |
|
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family; This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Pssm-ID: 380580 [Multi-domain] Cd Length: 357 Bit Score: 86.09 E-value: 1.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGpVI 116
Cdd:cd06357 1 RVGLLFSQTGVTAIIEQSMLNGALLAIEEINAAGGV--NGR--PIEPVVYDPASDPDRYRELAERLLLEDGVRHIFG-CY 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAV-PVATQGKTPMISPT-------------AGAdnitlQKNGNVQP---YVFRAQYKNSFM-GTKMAqFATETL 178
Cdd:cd06357 76 TSASRKAVlPVVERHNALLWYPTpyegfeyspnviyTGA-----VPNQHLLPlarYLLAHFGKRVFLvGSNYV-YPWESN 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 179 KaknivifqdnssdygtgITSAFKKDFKGNVV---YVESYQEgtkDFQAVLTEIKDKKFDAI--AINGyytEGG-AILKQ 252
Cdd:cd06357 150 R-----------------VARELIEASGGEVVgerYVPLGDT---DFAEIIEEIKSLKPDVVfsTLVG---DSIyAFYRA 206
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 253 MRDMGID---VPVIGP-------DGIGdpktAEIAGNKNTSNVYYAahfSVDAPAtkvSAPFAKAYKKAYGK--YPSQFT 320
Cdd:cd06357 207 YAEAGLDpadMPIASLttseaevAAIG----AEAAAGHYTSAPYFQ---SIDTPE---NRAFVEAYRARFGDdaVTSAVA 276
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1180510860 321 ALAYDSVRMIKAAIENENSTSKSAITKGLANLkNFDGVTGKMSIDKDHN 369
Cdd:cd06357 277 EAAYFQVHLLARAIERAGSDDPEAIRAALYGQ-EFDAPQGPVRIDPDNN 324
|
|
| PBP1_ABC_ligand_binding-like |
cd06341 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
37-357 |
5.53e-17 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380564 [Multi-domain] Cd Length: 340 Bit Score: 81.20 E-value: 5.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd06341 1 KIGLIYPDTGPGAASFSAARAGAEARFGLANAAGGI--NGR--KVEYVWCDDQSDPATNLQAARQLVEDEKVFALVGSSS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAvPVATQGKTPMISptAGADNITLQKNGNVQPYVFR--------AQYKNSFMGTKMAQFATETLKAknivifqd 188
Cdd:cd06341 77 AASGSAN-DYLAQAGIPVVG--GAGVSVWCFRNMFSNFFSLGgggstttyGQYAAALGGTKAAVVVTDIPAA-------- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 189 nSSDYGTGITSAFKKDFKGnVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIGPDGI 268
Cdd:cd06341 146 -SQQLAQQLAASLRAAGVE-VVGTAPYAAAAPDYTAVAQAAKAAGADAVVGVLDPDVAARVLKAARAQGLDLKVALSPSG 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 269 GDPKTAEIAGNK--NTSNVYYAAHFSVDAPAtkvsapfAKAYKKAYGKY-------PSQFTALAYDSVRMIKAAIEN--E 337
Cdd:cd06341 224 YDPSVLAAYGAAlaGVSVASTFLPFEADTPA-------VKAYRAAMAKYapelqdpLQQFALSGYIAADLFVRGLEAagG 296
|
330 340
....*....|....*....|
gi 1180510860 338 NSTSKSAItKGLANLKNFDG 357
Cdd:cd06341 297 CPTRAAFI-KALRDVKDYDA 315
|
|
| PBP1_SBP-like |
cd06329 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
45-369 |
5.70e-17 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380552 [Multi-domain] Cd Length: 343 Bit Score: 81.17 E-value: 5.70e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 45 SGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKeKVSAIVGPViTSGVQAAV 124
Cdd:cd06329 9 SGPFASVGEIYLKGLQFAIEEINAGGGL--LGR--KIELVPFDNKGSPQEALIQLKKAIDQ-GIRFVLQGN-SSAVAGAL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 125 PVATQgKTPMISPT---------AGADNITlqkNGNVQPYVFRAqYKNSFMGTK-MAQFATETLKAKNI-VIFQDNSSdy 193
Cdd:cd06329 83 IDAIE-KHNQRNPDkrvlflnygAEAPELT---GAKCSFWHFRF-DANADMKMAaLADYMKKDGSIKKVyLINQDYSF-- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 194 GTGITSAFKKDFKgnvVYVESYQ---------EGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPVIG 264
Cdd:cd06329 156 GRDVAAAAKKNLK---KKRPDIEivgedlhplGKVKDFSPYIAKIKASGADTVITGNWGNDLTLLMKAARDSGLKAPFYT 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 265 --PDGIGDPKTAEIAGnkntSNVYYAAHFSVDAPATKVSAPFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENENSTSK 342
Cdd:cd06329 233 yyADGPGAPAAIGEAG----VGRLVAVAYWHPNPKTPELEKFAEAFRAKYGRYPDFNIGRTYMGVEMLAAAIKKAGSTDP 308
|
330 340
....*....|....*....|....*...
gi 1180510860 343 SAITKGLANLKnFDGVTGKMSIDK-DHN 369
Cdd:cd06329 309 EKVAKALEGLS-FDTPGGPVTMRAdDHQ 335
|
|
| PBP1_NPR_GC-like |
cd06352 |
ligand-binding domain of membrane guanylyl-cyclase receptors; Ligand-binding domain of ... |
37-381 |
2.60e-16 |
|
ligand-binding domain of membrane guanylyl-cyclase receptors; Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type 1 periplasmic binding fold protein family.
Pssm-ID: 380575 [Multi-domain] Cd Length: 391 Bit Score: 79.71 E-value: 2.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGA-NFAIKQINANGgvkVNGKSYKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPV 115
Cdd:cd06352 1 KVGVLAPSNSQSLPVGYARSAPAiDIAIERINSEG---LLLPGFNFEFTYRDSCCDESEAVGAAADLIYKRNVDVFIGPA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 116 ITSGVQAAVPVATQGKTPMIspTAGADNITLQKNGNVqPYVFRAQYkNSfmgTKMAQFATETLKA---KNIVIFQDNSSD 192
Cdd:cd06352 78 CSAAADAVGRLATYWNIPII--TWGAVSASFLDKSRY-PTLTRTSP-NS---LSLAEALLALLKQfnwKRAAIIYSDDDS 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 193 Y----GTGITSAFKKDFKGNVVYVESYQ-EGTKDFQAVLTEIKDK------KFDAIAINgyyteggAILKQMRDMG---- 257
Cdd:cd06352 151 KcfsiANDLEDALNQEDNLTISYYEFVEvNSDSDYSSILQEAKKRariivlCFDSETVR-------QFMLAAHDLGmtng 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 258 ----IDVPVIGPDGIGDPKTAEIAGNKNTSNVYYAA----HFSVDAPATKVSAPFAKAYK-KAYGKY----------PSQ 318
Cdd:cd06352 224 eyvfIFIELFKDGFGGNSTDGWERNDGRDEDAKQAYesllVISLSRPSNPEYDNFSKEVKaRAKEPPfycydaseeeVSP 303
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1180510860 319 FTALAYDSVRMIKAAI-----ENENSTSKSAITKGLANLKnFDGVTGKMSIDKDHNPVKSMVMVGMTD 381
Cdd:cd06352 304 YAAALYDAVYLYALALnetlaEGGNYRNGTAIAQRMWNRT-FQGITGPVTIDSNGDRDPDYALLDLDP 370
|
|
| PBP1_SBP-like |
cd20378 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
37-372 |
3.53e-15 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380668 [Multi-domain] Cd Length: 357 Bit Score: 76.23 E-value: 3.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVKVNgksykfnIINKDAKTDNTETASVTSSLINKEKVSAIVGPVI 116
Cdd:cd20378 1 TLGGLVSMSGAFAAAGKLADRGMRLAVEEYGGALGRPLK-------YITRDTEGKPGTGVRKVQEAIAQDGARFFIGGTL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISpTAGADNITLQKNGnvqPYVFR---AQYknSFMGTKMAQFATETLKAKNIVIFqdnSSDY 193
Cdd:cd20378 74 SSVALAVSEEAEKAGGVYIT-SGGADEITGSRCN---RSTFRwsvPTY--GAIRQTVRPVIKAMPKAKRWYTI---TPQY 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 194 --GTGITSAFKKDFK-------GNvvyveSYQE-GTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGI--DVP 261
Cdd:cd20378 145 vfGESLLKNAKEVLKekgiehvGN-----SYHSlGEREFSGYLTKAMAARPDVLLILNFGSQAVDALRQAVSFGLkrKMK 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 262 VIGPDGIGDPKTAEIaGNKNTSNVYYAAHF--SVDAPATKVsapFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENENS 339
Cdd:cd20378 220 ILVAWSSGLDQFQEL-GPDICEGVYFGAQYwhDVDTPANKA---LVKVYQAKFKETPSYALAAGYACTRMLLDAIDKAGS 295
|
330 340 350
....*....|....*....|....*....|....
gi 1180510860 340 TSKSAITKGLANLKnFDGVTGKMSID-KDHNPVK 372
Cdd:cd20378 296 TDPAAVIKALEGLK-YDGITGDEEVRaADHQVLK 328
|
|
| PBP1_FmdD-like |
cd06355 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
37-378 |
1.80e-14 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type 1 periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380578 [Multi-domain] Cd Length: 347 Bit Score: 73.76 E-value: 1.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVKvnGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGpVI 116
Cdd:cd06355 1 KVGILHSLSGTMAISERPLVDATLLAIDEINAAGGLL--GR--KIEPVIEDGASDWPTFAEKAEKLITQDKVAVIFG-CW 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAV-PVATQGKTPMISPTagadnitlQKNGNVQ-PYVFraqyknsFMGTKMAQ-------FATETLkAKNIVIFq 187
Cdd:cd06355 76 TSASRKAVlPVIEKYNGLLFYPV--------QYEGLEQsPNIV-------YTGATPNQqilpaidWLLENL-GKRFFLV- 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 188 dnSSDY-----GTGITSAFKKDFKGNVVYVESYQEGTKDFQAVLTEIKDKKFDAI--AINGyyTEGGAILKQMRDMGI-- 258
Cdd:cd06355 139 --GSDYvfprtANKIIRDQLKALGGEVVGEEYVPLGGTDFDAIVAKIKAFKPDVIvnTLNG--DSNIAFFKQLAAAGIta 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 259 -DVPVIGPDgIGDPKTAEIAGNKNTSNvyYAA--HF-SVDAPATKvsaPFAKAYKKAYGKYP--SQFTALAYDSVRMIKA 332
Cdd:cd06355 215 sDLPVLSFS-VSEAELRAIGPEELAGH--YAAwnYFqSLDTPENQ---AFVEAFKAKYGADRvtSDPMEAAYLGVYLWAQ 288
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1180510860 333 AIENENSTSKSAITKGLANLKnFDGVTGKMSIDKDHNPVKSMVMVG 378
Cdd:cd06355 289 AVEKAGSFDPDAVRAALKGQS-FEAPGGTVTVDPENHHLWKPVRIG 333
|
|
| PBP1_ABC_ligand_binding-like |
cd06334 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
37-368 |
2.14e-14 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380557 [Multi-domain] Cd Length: 360 Bit Score: 73.82 E-value: 2.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGVkvNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPVi 116
Cdd:cd06334 1 KIGLLTDLTGPTADVGKPYAQGVRDYLNYVNEEGGI--NGV--KIELEECDTGYKVPRAVACYKRLKAQDGVVAILGWG- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVPVATQGKTPMISPTAGAdniTLQKNGNVQPYVFraqyknsFMGTK-----------MAQFATETLKAKNIVI 185
Cdd:cd06334 76 TGDTEALAPRVAKDKIPYISASYGR---SLADDGKVFPYNF-------FVGATyssqarallkyIAQEWGGKLKGPKVAF 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 186 FQDNSSdYGTG---ITSAFKKDFKGNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVPV 262
Cdd:cd06334 146 VYHDSP-FGREpipALKAYAKELGFEVVAEQVPSPGALDATAQWLRIRRAGPDYVIIQGTGGSVAVIIKDAKRLGLKTKF 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 263 IGPDGIGDPKTAEIAGnkNTSNVYYAAHFSVDAPATKVSAPFAKAYKKAYGKYPSQFT---------ALAYDSVRMIKAA 333
Cdd:cd06334 225 IGNIWGGDEDLIKLAG--DAAEGYVGVSPFAFGTDDPPGKEIVEEVAKKGKGDGPEEVgtvyynrgwATAMLAVEAIRRA 302
|
330 340 350
....*....|....*....|....*....|....*....
gi 1180510860 334 IEN-ENSTSKSAITKGLANLKNFD--GVTGKMSIDK-DH 368
Cdd:cd06334 303 DKAgGGTGLGNKLKAGLERLKDFDlgGLAPPVTFTPtDH 341
|
|
| PBP1_ABC_transporter_GPCR_C-like |
cd04509 |
Family C of G-protein coupled receptors and their close homologs, the type 1 ... |
37-270 |
4.80e-11 |
|
Family C of G-protein coupled receptors and their close homologs, the type 1 periplasmic-binding proteins of ATP-binding cassette transporter-like systems; This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type 1 periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, pheromone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts through either mGluRs or iGluRs. mGluRs subunits possess seven transmembrane segments and a large N-terminal extracellular domain. ABC-type leucine-isoleucine-valine binding protein (LIVBP) is a bacterial periplasmic binding protein that has homology with the amino-terminal domain of the glutamate-receptor ion channels (iGluRs). The extracellular regions of iGluRs are made of two PBP-like domains in tandem, a LIVBP-like domain that constitutes the N terminus (included in this model) followed by a domain related to lysine-arginine-ornithine-binding protein (LAOBP) that belongs to the type 2 periplasmic binding fold protein superfamily. The uncharacterized periplasmic components of various ABC-type transport systems are also included in this family.
Pssm-ID: 380490 Cd Length: 306 Bit Score: 63.09 E-value: 4.80e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASS----------YGKAEQDGANFAIKQINANGgvkVNGKSYKFNIINKDAKTDNTETASVTSSLIN-- 104
Cdd:cd04509 1 KVGVLFAVHGKGPSgvpcgdivaqYGIQRFEAMEQALDDINADP---NLLPNNTLGIVIYDDCCDPKQALEQSNKFVNdl 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 105 --------------------KEKVSAIVGPVITSGVQAAVPVATQGKTPMISPTAGADNITlqkNGNVQPYVFRAQYKNS 164
Cdd:cd04509 78 iqkdtsdvrctngeppvfvkPEGIKGVIGHLCSSVTIPVSNILELFGIPQITYAATAPELS---DDRGYQLFLRVVPLDS 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 165 FMGTKMAQFatetLKAKN---IVIFQDNSSdYGTGITSAFKKDFK-GNVVYVES----YQEGTKDFQAVLTEIKDK-KFD 235
Cdd:cd04509 155 DQAPAMADI----VKEKVwqyVSIVHDEGQ-YGEGGARAFQDGLKkGGLCIAFSdgitAGEKTKDFDRLVARLKKEnNIR 229
|
250 260 270
....*....|....*....|....*....|....*..
gi 1180510860 236 AIAINGYYTEGGAILKQMRDMGI--DVPVIGPDGIGD 270
Cdd:cd04509 230 FVVYFGYHPEMGQILRAARRAGLvgKFQFMGSDGWAN 266
|
|
| PBP1_GABAb_receptor_plant |
cd19990 |
periplasmic ligand-binding domain of Arabidopsis thaliana glutamate receptors and its close ... |
37-375 |
5.68e-10 |
|
periplasmic ligand-binding domain of Arabidopsis thaliana glutamate receptors and its close homologs in other plants; This group includes the ligand-binding domain of Arabidopsis thaliana glutamate receptors, which have sequence similarity with animal ionotropic glutamate receptor and its close homologs in other plants. The ligand-binding domain of GABAb receptors are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb receptor or GABAbR). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha-i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Pssm-ID: 380645 [Multi-domain] Cd Length: 373 Bit Score: 60.32 E-value: 5.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSgdaSSYGKAEQDGANFAIKQINANGgvkvNGKSYKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPvI 116
Cdd:cd19990 1 KIGAILDLN---SRVGKEAKVAIEMAVSDFNSDS----SSYGTKLVLHVRDSKGDPLQAASAALDLIKNKKVEAIIGP-Q 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 TSGVQAAVP-VATQGKTPMISPTAGADNITLQKNgnvqPYVFRAQYKNSFmgtKMAQFAT--ETLKAKN-IVIFQDNssD 192
Cdd:cd19990 73 TSEEASFVAeLGNKAQVPIISFSATSPTLSSLRW----PFFIRMTHNDSS---QMKAIAAivQSYGWRRvVLIYEDD--D 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 193 YGTGITSAFKKDFKGNVVYVEsYQEG-----TKDF-QAVLTEIKDKKFDAIAINGyYTEGGAIL----KQMRDMGIDVPV 262
Cdd:cd19990 144 YGSGIIPYLSDALQEVGSRIE-YRVAlppssPEDSiEEELIKLKSMQSRVFVVHM-SSLLASRLfqeaKKLGMMEKGYVW 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 263 IGPDGIG------DPKTAE----IAGNKNtsnvYYaahfsvdaPATKVSAPFAKAYKKAYG-KYPSQFTA-------LAY 324
Cdd:cd19990 222 IVTDGITnlldslDSSTISsmqgVIGIKT----YI--------PESSEFQDFKARFRKKFRsEYPEEENAepniyalRAY 289
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1180510860 325 DSVRMIKAAIE---NENSTSKSAITkGLANLK-----NFDGVTGKMSIDKDHNPVKSMV 375
Cdd:cd19990 290 DAIWALAHAVEklnSSGGNISVSDS-GKKLLEeilstKFKGLSGEVQFVDGQLAPPPAF 347
|
|
| PBP1_SBP-like |
cd06327 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
37-374 |
5.76e-10 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in gram-negative, gram-positive bacteria, and archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380550 [Multi-domain] Cd Length: 336 Bit Score: 60.28 E-value: 5.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSY-GKAEQDGANFAIKQInangGVKVNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGpV 115
Cdd:cd06327 1 RIGVLTDLSGVYADLsGPGSVEAAKMAVEDF----GGKVLGR--PIEVVSADHQNKPDVASAIAREWYDRDGVDAIVD-V 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 116 ITSGVQAAV-PVATQGKTPMISPTAGADNITlqkNGNVQPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFQDNSsdYG 194
Cdd:cd06327 74 PNSAVALAVqKLAKEKKKIAIVTGAGSSDLT---GKACSPYGVHWAYDTYALARGTVKALVKQGGKSWFFITADYA--FG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 195 TGITSAFKKDFK---GNVVYVESYQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGIDVP----VIGPDG 267
Cdd:cd06327 149 HSLEADATAAVKaagGKVVGSVRHPLGTTDFSSFLLQAQASGADVIALANAGADLVNAVKQAREFGLTDGgqklAALLLF 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 268 IGDPKTAeiaGNKNTSNVYYAAHFSVDA-PATKVsapFAKAYKKAYGKYPSQFTALAYDSVRMIKAAIENENSTSKSAIT 346
Cdd:cd06327 229 ITDIHAL---GLDAAQGLYLTTAFYWDRdDATRA---WAKRFFARTGKMPTMLQAGVYSAVLHYLKAVKAAGTDDADAVV 302
|
330 340
....*....|....*....|....*...
gi 1180510860 347 KGLANLKNFDGVTGKMSIDKDHNPVKSM 374
Cdd:cd06327 303 AKMREMPVNDFFAKNGRIRADGRVVHDM 330
|
|
| PBP1_ABC_ligand_binding-like |
cd06337 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
37-378 |
9.00e-10 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380560 [Multi-domain] Cd Length: 354 Bit Score: 59.62 E-value: 9.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSYGKAeqdgANFAIKQIN---ANGGVKVNGKSYKFNIINKDAKTDNTETASVTSSLINKEKVSAIVG 113
Cdd:cd06337 1 KIGRVSPLTGPLAAFGEA----DPWVLEQIReafADGGIKVGGKKYPVEIVVRDSQSDPNRAGEAARDLILRDKVDLMLA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 114 PVITSGVQAAVPVATQGKTPMISPTAgadnitlqkngNVQPYVF--RAQYKNSFMGTKMAQFATETLKA----------- 180
Cdd:cd06337 77 SGTPDTVNPVADQCEANGVPCISTDA-----------PWQAWFFgrGGDPAKGFKWTFHFFWGLEDIAAnflgmwdqvpt 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 181 -KNIVIFQDNSSDyGTGITSAFKKDFKG-NVVYVES--YQEGTKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDM 256
Cdd:cd06337 146 nKVVGLLWPNDPD-GTAFADAFLGLPAAaGYTLVDPgrFPPGTDDFSSIINAFKKAGVEIVTGVMIPPDFATFWRQAAQQ 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 257 GI--DVPVIGpDGIGDPKTAEIAG---NKNTSNVYYAAHFSVDAPATKVSAP-FAKAYKKAYGKYPSQFTALAYDSVRMI 330
Cdd:cd06337 225 GFkpKVVTIG-KALLFPSAVAALGdlgDGLSTEVWWSPAHPFKSSLTGQTAAeLADAYEKATGKQWTQPLGYAHALFEVA 303
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1180510860 331 KAAIENENSTSKSAITKGLANLKnFDGVTGKMSIDKDHNP-VKSMVMVG 378
Cdd:cd06337 304 VDALKRAGSPDDEAVRAALADTD-LDTIVGPVDFTSGPVPnVAKTPLVG 351
|
|
| Peripla_BP_5 |
pfam13433 |
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic ... |
36-365 |
3.48e-09 |
|
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic binding proteins.
Pssm-ID: 463875 [Multi-domain] Cd Length: 363 Bit Score: 57.99 E-value: 3.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 36 IKIGGVFDTSGDASSYGKAEQDGANFAIKQINANGGvkVNGKsyKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGpV 115
Cdd:pfam13433 1 IKVGVLHSLTGTMAISERSLKDATLMAIEEINAAGG--VLGR--KIEPVVVDPASDWPLFAEKARKLIDQDKVRVVFG-C 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 116 ITSGVQAAV-------------PVATQGK--TPMISPTAGADNitlQkngNVQPyvfraqyknsfmgtkMAQFATETLKA 180
Cdd:pfam13433 76 WTSASRKAVlpvferhngllfyPVQYEGFesSRNIFYTGAAPN---Q---QAIP---------------AVDYLLSELGK 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 181 KNIVIfqdnSSDY-----GTGITSAFKKDFKGNVVYVESYQEGTKDFQAVLTEIKDKKFDAI--AINGyyTEGGAILKQM 253
Cdd:pfam13433 135 RFFLV----GSDYvyprtTNRILRAYLKAKGGEVVGERYLPLGSSDWQSIVAKIKAAGPDVVfsTING--DSNVAFYRAL 208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 254 RDMGID---VPV----IGPDGIGDPKTAEIAGNKNTSNvYYAahfSVDAPATKVsapFAKAYKKAYG--KYPSQFTALAY 324
Cdd:pfam13433 209 RAAGITaedIPVmsfsVAEEELAGMGPEPLVGHLAAWN-YFQ---SLDTPENKA---FVAAFKARYGddRVTNDPMEAAY 281
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1180510860 325 DSVRMIKAAIENENSTSKSAITKGLANLKnFDGVTGKMSID 365
Cdd:pfam13433 282 IGVHLWAQAVEKAGTDDPDAVRQAMLGQE-FDAPQGPVKID 321
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|
| PBP1_glutamate_receptors-like |
cd06269 |
ligand-binding domain of family C G-protein couples receptors (GPCRs), membrane bound guanylyl ... |
37-270 |
3.94e-07 |
|
ligand-binding domain of family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as natriuretic peptide receptors (NPRs), and N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of ionotropic glutamate rece; This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type 1 family. The family C GPCRs consists of metabotropic glutamate receptor (mGluR), a calcium-sensing receptor (CaSR), gamma-aminobutyric acid receptor (GABAbR), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing variants of the orphan receptors are not included in this CD. The family C GPCRs are activated by endogenous agonists such as amino acids, ions, and sugar based molecules. Their amino terminal ligand-binding region is homologous to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). The ionotropic glutamate receptors (iGluRs) have an integral ion channel and are subdivided into three major groups based on their pharmacology and structural similarities: NMDA receptors, AMPA receptors, and kainate receptors. The family of membrane bound guanylyl cyclases is further divided into three subfamilies: the ANP receptor (GC-A)/C-type natriuretic peptide receptor (GC-B), the heat-stable enterotoxin receptor (GC-C)/sensory organ specific membrane GCs such as retinal receptors (GC-E, GC-F), and olfactory receptors (GC-D and GC-G).
Pssm-ID: 380493 [Multi-domain] Cd Length: 332 Bit Score: 51.26 E-value: 3.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 37 KIGGVFDTSGDASSyGKAEQDGANFAIKQINANGgvkVNGKSYKFNIINKDAKTDNTETASVTSSLINKEKVSAIVGPvi 116
Cdd:cd06269 1 TIGALLPVHDYLES-GAKVLPAFELALSDVNSRP---DLLPKTTLGLAIRDSECNPTQALLSACDLLAAAKVVAILGP-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 117 tSGVQAAVPV---ATQGKTPMISptAGADNITLQkNGNVQPYVFRAQYKNSFMGTKMAQFATETLKAKNIVIFQDNSsdY 193
Cdd:cd06269 75 -GCSASAAPVanlARHWDIPVLS--YGATAPGLS-DKSRYAYFLRTVPPDSKQADAMLALVRRLGWNKVVLIYSDDE--Y 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180510860 194 GTGITSAFKKDFK---GNVVYVESYQEG-TKDFQAVLTEIKDKKFDAIAINGYYTEGGAILKQMRDMGI---DVPVIGPD 266
Cdd:cd06269 149 GEFGLEGLEELFQekgGLITSRQSFDENkDDDLTKLLRNLRDTEARVIILLASPDTARSLMLEAKRLDMtskDYVWFVID 228
|
....
gi 1180510860 267 GIGD 270
Cdd:cd06269 229 GEAS 232
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