|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
64-447 |
1.12e-134 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 392.31 E-value: 1.12e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 64 EFKLVVVRAVISDRLTMREAAARFNLSAEiLVRRWLDVYNDAGAEGLlnmqcgrpgqmtkPKNIPPLTDKELEKLspEEL 143
Cdd:NF033516 1 EFKLEAVREVLEGGKSVAEVARELGISPS-TLYRWRKKYRGGGEAAD-------------AGRLKELLTPEEEEN--RRL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 144 RAELRYLRAENAYPKKVESLGSERKKWQkalIISELRHEHALRDLLRAAGMSRSTWYYNMNAL--KQGDRYAGLKENIRK 221
Cdd:NF033516 65 KRELAELRLENEILKKARKLLRPAVKYA---LIDALRGEYSVRRACRVLGVSRSTYYYWRKRPpsRRAPDDAELRARIRE 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 222 IYHYHKGRYGYRRITLALRKQGLRINHKTVQRLMAELSLRSVIRaKKYRAWKGRTGE---AAPNILSRNFGASKANEKWV 298
Cdd:NF033516 142 IFEESRGRYGYRRITALLRREGIRVNHKRVYRLMRELGLLARRR-RKRRPYTTDSGHvhpVAPNLLNRQFTATRPNQVWV 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 299 TDVTEFPVQGKKLYLSSVLDLFNREVIAYSLSERPVMEMVNTMLDGAFPKLRPGDAPLLHSDQGWHYRMRSYQERLKAHG 378
Cdd:NF033516 221 TDITYIRTAEGWLYLAVVLDLFSREIVGWSVSTSMSAELVLDALEMAIEWRGKPEGLILHSDNGSQYTSKAYREWLKEHG 300
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1194622937 379 MTQSMSRKGNCLDNAVMENFFGTLKSECFYLREFRSVSALRKAVEDYIHYYNNERISLKLKGLSPVEYR 447
Cdd:NF033516 301 ITQSMSRPGNCWDNAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
143-454 |
9.60e-103 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 308.62 E-value: 9.60e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 143 LRAELRYLRAENAYPKKVESLGSERKKWQKALIISELRHEHALRDLLRAAGMSRSTWYYNMNALKQGDRYAGLKENIRKI 222
Cdd:COG2801 1 ELAEEEELRKEEELLRRLLLLLRLLLLRRRVLRRVSRRRRRLLRLLRRRRARSRRRRRLRRPRSYRADEDAELLERIKEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 223 YHYHKgRYGYRRITLALRKQGLRINHKTVQRLMAELSLRSVIRAK-KYRAWKGRTGEAAPNILsrnFGASKANEKWVTDV 301
Cdd:COG2801 81 FAESP-RYGYRRITAELRREGIAVNRKRVRRLMRELGLQARRRRKkKYTTYSGHGGPIAPNLL---FTATAPNQVWVTDI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 302 TEFPVQGKKLYLSSVLDLFNREVIAYSLSERPVMEMVNTMLDGAFPKLRPGDAPLLHSDQGWHYRMRSYQERLKAHGMTQ 381
Cdd:COG2801 157 TYIPTAEGWLYLAAVIDLFSREIVGWSVSDSMDAELVVDALEMAIERRGPPKPLILHSDNGSQYTSKAYQELLKKLGITQ 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1194622937 382 SMSRKGNCLDNAVMENFFGTLKSECFYLREFRSVSALRKAVEDYIHYYNNERISLKLKGLSPVEYRTQALRAA 454
Cdd:COG2801 237 SMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEYEKQLAAAA 309
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
193-445 |
1.98e-55 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 185.45 E-value: 1.98e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 193 GMSRSTWYYNMNALKQGD-------RYAGLKENIRKIYHYHKGRYGYRRITLALRKQGLRINHKTVQRLMAELSLRSVIR 265
Cdd:PHA02517 2 GIAPSTYYRCQQQRHHPDkrraraqHDDWLKSEILRVYDENHQVYGVRKVWRQLNREGIRVARCTVGRLMKELGLAGVLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 266 AKKYRAWKGRTGEAAPNILSRNFGASKANEKWVTDVTEFPVQGKKLYLSSVLDLFNREVIAYSLSERPVMEMVNTMLDGA 345
Cdd:PHA02517 82 GKKVRTTISRKAVAAPDRVNRQFVATRPNQLWVADFTYVSTWQGWVYVAFIIDVFARRIVGWRVSSSMDTDFVLDALEQA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 346 -FPKLRPGDApLLHSDQGWHYRMRSYQERLKAHGMTQSMSRKGNCLDNAVMENFFGTLKSECFYLREFRSVSALRKAVED 424
Cdd:PHA02517 162 lWARGRPGGL-IHHSDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELATLE 240
|
250 260
....*....|....*....|.
gi 1194622937 425 YIHYYNNERISLKLKGLSPVE 445
Cdd:PHA02517 241 WVAWYNNRRLHERLGYTPPAE 261
|
|
| rve |
pfam00665 |
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
293-389 |
7.60e-26 |
|
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.
Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 100.85 E-value: 7.60e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 293 ANEKWVTDVTEFPV--QGKKLYLSSVLDLFNREVIAYSLSERPVMEMVNTMLDGAFpKLRPGDAPLLHSDQGWHYRMRSY 370
Cdd:pfam00665 1 PNQLWQGDFTYIRIpgGGGKLYLLVIVDDFSREILAWALSSEMDAELVLDALERAI-AFRGGVPLIIHSDNGSEYTSKAF 79
|
90
....*....|....*....
gi 1194622937 371 QERLKAHGMTQSMSRKGNC 389
Cdd:pfam00665 80 REFLKDLGIKPSFSRPGNP 98
|
|
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
65-445 |
7.17e-15 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 74.55 E-value: 7.17e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 65 FKLVVVRAVISDRLTMREAAARFNLSAEIlVRRWLDVYNDAGAEGLLNMQcgrpgqmTKPKNIPPLTDKELEKlspeelr 144
Cdd:NF033577 1 GRLELVRLVLEDGWSVREAARRFGISRKT-VYKWLKRYRAGGEEGLIDRS-------RRPHRSPRRTSPETEA------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 145 aelrylraenaypkkveslgserkkwqkalIISELRHEHalrdllraagmsrstwyynmnalkqgdryaglkenirkiyh 224
Cdd:NF033577 66 ------------------------------RILALRREL----------------------------------------- 74
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 225 yhkgRYGYRRITLALRKQGLRINHKTVQRLMAELSL-RSVIRAKKYRAWKgrtgeaapnilsrNFGASKANEKWVTDVTE 303
Cdd:NF033577 75 ----RLGPRRIAYELERQGPGVSRSTVHRILRRHGLsRLRALDRKTGKVK-------------RYERAHPGELWHIDIKK 137
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 304 FP--VQGKKLYLSSVLDLFNREVIAYSL-SERPvmEMVNTMLDGAF-----PKLRpgdaplLHSDQGWHYR--MRSYQER 373
Cdd:NF033577 138 LGriPDVGRLYLHTAIDDHSRFAYAELYpDETA--ETAADFLRRAFaehgiPIRR------VLTDNGSEFRsrAHGFELA 209
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1194622937 374 LKAHGMTQSMSRKGNCLDNAVMENFFGTLKSECFYLREFRSVSALRKAVEDYIHYYNNERISLKLKGLSPVE 445
Cdd:NF033577 210 LAELGIEHRRTRPYHPQTNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAE 281
|
|
| InsE |
COG2963 |
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; |
1-80 |
1.89e-05 |
|
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442203 [Multi-domain] Cd Length: 93 Bit Score: 42.99 E-value: 1.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 1 MAKP--KYSPETKLAVVNHYLSGKDGEQSTADLFGIERTSVRRWVRAWQFHGAEGLTAKNNHYSDEFKLVVVRAVIsDRL 78
Cdd:COG2963 1 MSKKrrRYSPEFKAEAVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDGRTTPEQAEIRRLRKEL-RRL 79
|
..
gi 1194622937 79 TM 80
Cdd:COG2963 80 EM 81
|
|
| HTH_28 |
pfam13518 |
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ... |
11-57 |
1.09e-04 |
|
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.
Pssm-ID: 463908 [Multi-domain] Cd Length: 52 Bit Score: 39.88 E-value: 1.09e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1194622937 11 KLAVVNHYLSGKDGEQsTADLFGIERTSVRRWVRAWQFHGAEGLTAK 57
Cdd:pfam13518 2 RLKIVLLALEGESIKE-AARLFGISRSTVYRWIRRYREGGLEGLLPR 47
|
|
| transpos_IS630 |
NF033545 |
IS630 family transposase; |
66-196 |
3.02e-03 |
|
IS630 family transposase;
Pssm-ID: 468076 [Multi-domain] Cd Length: 298 Bit Score: 39.55 E-value: 3.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 66 KLVVVRAVISDRLTMREAAARFNLSAEIlVRRWLDVYNDAGAEGLLNMQcgRPGQmtkpkniPPltdkeleKLSPEELRA 145
Cdd:NF033545 1 RRARILLLAAEGLSITEIAERLGVSRST-VYRWLKRFNEGGLEGLLDKP--RPGR-------PR-------KLLSEQQAE 63
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1194622937 146 ELRYLRAENaypkkveslGSERKKWQKALIISELRHEH-------ALRDLLRAAGMSR 196
Cdd:NF033545 64 LLALLLEEP---------PEGAGHWTLRELAALLEEEFgveysrsTVRRLLKRLGLSP 112
|
|
| transpos_ISNCY_2 |
NF033594 |
ISNCY family transposase; The ISNCY insertion sequence family, as defined by ISFinder, encodes ... |
69-118 |
3.69e-03 |
|
ISNCY family transposase; The ISNCY insertion sequence family, as defined by ISFinder, encodes several apparently unrelated families of transposases. Members of this family resemble the transposases of ISNCY family elements such as IS1202, ISTde1, ISKpn21, and ISCARN1.
Pssm-ID: 468103 [Multi-domain] Cd Length: 367 Bit Score: 39.39 E-value: 3.69e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1194622937 69 VVRAVISDRLTMREAAARFNLSaEILVRRWLDVYNDAGAEGLLNMQCGRP 118
Cdd:NF033594 2 VIQKVVDGRLTVKEAAELLGLS-ERQVRRLLKRYREEGAAGLVHGNRGRP 50
|
|
| transpos_IS630 |
NF033545 |
IS630 family transposase; |
29-99 |
5.66e-03 |
|
IS630 family transposase;
Pssm-ID: 468076 [Multi-domain] Cd Length: 298 Bit Score: 38.78 E-value: 5.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 29 ADLFGIERTSVRRWVRAWQFHGAEGLTAKNNH-----YSDEFKLVVVRAVISDR------LTMREAAARFNLSAEIL--- 94
Cdd:NF033545 19 AERLGVSRSTVYRWLKRFNEGGLEGLLDKPRPgrprkLLSEQQAELLALLLEEPpegaghWTLRELAALLEEEFGVEysr 98
|
....*..
gi 1194622937 95 --VRRWL 99
Cdd:NF033545 99 stVRRLL 105
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
64-447 |
1.12e-134 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 392.31 E-value: 1.12e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 64 EFKLVVVRAVISDRLTMREAAARFNLSAEiLVRRWLDVYNDAGAEGLlnmqcgrpgqmtkPKNIPPLTDKELEKLspEEL 143
Cdd:NF033516 1 EFKLEAVREVLEGGKSVAEVARELGISPS-TLYRWRKKYRGGGEAAD-------------AGRLKELLTPEEEEN--RRL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 144 RAELRYLRAENAYPKKVESLGSERKKWQkalIISELRHEHALRDLLRAAGMSRSTWYYNMNAL--KQGDRYAGLKENIRK 221
Cdd:NF033516 65 KRELAELRLENEILKKARKLLRPAVKYA---LIDALRGEYSVRRACRVLGVSRSTYYYWRKRPpsRRAPDDAELRARIRE 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 222 IYHYHKGRYGYRRITLALRKQGLRINHKTVQRLMAELSLRSVIRaKKYRAWKGRTGE---AAPNILSRNFGASKANEKWV 298
Cdd:NF033516 142 IFEESRGRYGYRRITALLRREGIRVNHKRVYRLMRELGLLARRR-RKRRPYTTDSGHvhpVAPNLLNRQFTATRPNQVWV 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 299 TDVTEFPVQGKKLYLSSVLDLFNREVIAYSLSERPVMEMVNTMLDGAFPKLRPGDAPLLHSDQGWHYRMRSYQERLKAHG 378
Cdd:NF033516 221 TDITYIRTAEGWLYLAVVLDLFSREIVGWSVSTSMSAELVLDALEMAIEWRGKPEGLILHSDNGSQYTSKAYREWLKEHG 300
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1194622937 379 MTQSMSRKGNCLDNAVMENFFGTLKSECFYLREFRSVSALRKAVEDYIHYYNNERISLKLKGLSPVEYR 447
Cdd:NF033516 301 ITQSMSRPGNCWDNAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
143-454 |
9.60e-103 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 308.62 E-value: 9.60e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 143 LRAELRYLRAENAYPKKVESLGSERKKWQKALIISELRHEHALRDLLRAAGMSRSTWYYNMNALKQGDRYAGLKENIRKI 222
Cdd:COG2801 1 ELAEEEELRKEEELLRRLLLLLRLLLLRRRVLRRVSRRRRRLLRLLRRRRARSRRRRRLRRPRSYRADEDAELLERIKEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 223 YHYHKgRYGYRRITLALRKQGLRINHKTVQRLMAELSLRSVIRAK-KYRAWKGRTGEAAPNILsrnFGASKANEKWVTDV 301
Cdd:COG2801 81 FAESP-RYGYRRITAELRREGIAVNRKRVRRLMRELGLQARRRRKkKYTTYSGHGGPIAPNLL---FTATAPNQVWVTDI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 302 TEFPVQGKKLYLSSVLDLFNREVIAYSLSERPVMEMVNTMLDGAFPKLRPGDAPLLHSDQGWHYRMRSYQERLKAHGMTQ 381
Cdd:COG2801 157 TYIPTAEGWLYLAAVIDLFSREIVGWSVSDSMDAELVVDALEMAIERRGPPKPLILHSDNGSQYTSKAYQELLKKLGITQ 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1194622937 382 SMSRKGNCLDNAVMENFFGTLKSECFYLREFRSVSALRKAVEDYIHYYNNERISLKLKGLSPVEYRTQALRAA 454
Cdd:COG2801 237 SMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEYEKQLAAAA 309
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
193-445 |
1.98e-55 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 185.45 E-value: 1.98e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 193 GMSRSTWYYNMNALKQGD-------RYAGLKENIRKIYHYHKGRYGYRRITLALRKQGLRINHKTVQRLMAELSLRSVIR 265
Cdd:PHA02517 2 GIAPSTYYRCQQQRHHPDkrraraqHDDWLKSEILRVYDENHQVYGVRKVWRQLNREGIRVARCTVGRLMKELGLAGVLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 266 AKKYRAWKGRTGEAAPNILSRNFGASKANEKWVTDVTEFPVQGKKLYLSSVLDLFNREVIAYSLSERPVMEMVNTMLDGA 345
Cdd:PHA02517 82 GKKVRTTISRKAVAAPDRVNRQFVATRPNQLWVADFTYVSTWQGWVYVAFIIDVFARRIVGWRVSSSMDTDFVLDALEQA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 346 -FPKLRPGDApLLHSDQGWHYRMRSYQERLKAHGMTQSMSRKGNCLDNAVMENFFGTLKSECFYLREFRSVSALRKAVED 424
Cdd:PHA02517 162 lWARGRPGGL-IHHSDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELATLE 240
|
250 260
....*....|....*....|.
gi 1194622937 425 YIHYYNNERISLKLKGLSPVE 445
Cdd:PHA02517 241 WVAWYNNRRLHERLGYTPPAE 261
|
|
| rve |
pfam00665 |
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
293-389 |
7.60e-26 |
|
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.
Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 100.85 E-value: 7.60e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 293 ANEKWVTDVTEFPV--QGKKLYLSSVLDLFNREVIAYSLSERPVMEMVNTMLDGAFpKLRPGDAPLLHSDQGWHYRMRSY 370
Cdd:pfam00665 1 PNQLWQGDFTYIRIpgGGGKLYLLVIVDDFSREILAWALSSEMDAELVLDALERAI-AFRGGVPLIIHSDNGSEYTSKAF 79
|
90
....*....|....*....
gi 1194622937 371 QERLKAHGMTQSMSRKGNC 389
Cdd:pfam00665 80 REFLKDLGIKPSFSRPGNP 98
|
|
| rve_2 |
pfam13333 |
Integrase core domain; |
396-451 |
3.94e-18 |
|
Integrase core domain;
Pssm-ID: 372570 [Multi-domain] Cd Length: 52 Bit Score: 77.69 E-value: 3.94e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1194622937 396 ENFFGTLKSECFYLREFRSVSALRKAVEDYIHYYNNERislkLKGLSPVEYRTQAL 451
Cdd:pfam13333 1 ESFFGSLKTEMVYGEHFKTLEELELAIFDYIEWYNNKR----LKGLSPVQYRNQSL 52
|
|
| HTH_21 |
pfam13276 |
HTH-like domain; This domain contains a predicted helix-turn-helix suggesting a DNA-binding ... |
215-268 |
6.29e-16 |
|
HTH-like domain; This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.
Pssm-ID: 463824 [Multi-domain] Cd Length: 60 Bit Score: 71.83 E-value: 6.29e-16
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1194622937 215 LKENIRKIYHYHKGRYGYRRITLALRKQG-LRINHKTVQRLMAELSLRSVIRAKK 268
Cdd:pfam13276 6 LLEAIREIFEESRGTYGYRRITAELRREGgIRVNRKRVARLMRELGLRARRRRKR 60
|
|
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
65-445 |
7.17e-15 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 74.55 E-value: 7.17e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 65 FKLVVVRAVISDRLTMREAAARFNLSAEIlVRRWLDVYNDAGAEGLLNMQcgrpgqmTKPKNIPPLTDKELEKlspeelr 144
Cdd:NF033577 1 GRLELVRLVLEDGWSVREAARRFGISRKT-VYKWLKRYRAGGEEGLIDRS-------RRPHRSPRRTSPETEA------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 145 aelrylraenaypkkveslgserkkwqkalIISELRHEHalrdllraagmsrstwyynmnalkqgdryaglkenirkiyh 224
Cdd:NF033577 66 ------------------------------RILALRREL----------------------------------------- 74
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 225 yhkgRYGYRRITLALRKQGLRINHKTVQRLMAELSL-RSVIRAKKYRAWKgrtgeaapnilsrNFGASKANEKWVTDVTE 303
Cdd:NF033577 75 ----RLGPRRIAYELERQGPGVSRSTVHRILRRHGLsRLRALDRKTGKVK-------------RYERAHPGELWHIDIKK 137
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 304 FP--VQGKKLYLSSVLDLFNREVIAYSL-SERPvmEMVNTMLDGAF-----PKLRpgdaplLHSDQGWHYR--MRSYQER 373
Cdd:NF033577 138 LGriPDVGRLYLHTAIDDHSRFAYAELYpDETA--ETAADFLRRAFaehgiPIRR------VLTDNGSEFRsrAHGFELA 209
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1194622937 374 LKAHGMTQSMSRKGNCLDNAVMENFFGTLKSECFYLREFRSVSALRKAVEDYIHYYNNERISLKLKGLSPVE 445
Cdd:NF033577 210 LAELGIEHRRTRPYHPQTNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAE 281
|
|
| rve_3 |
pfam13683 |
Integrase core domain; |
377-443 |
2.45e-12 |
|
Integrase core domain;
Pssm-ID: 433402 [Multi-domain] Cd Length: 67 Bit Score: 61.85 E-value: 2.45e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1194622937 377 HGMTQSMSRKGNCLDNAVMENFFGTLKSECFYLREFRSVSALRKAVEDYIHYYNNERISLKLKGLSP 443
Cdd:pfam13683 1 LGIEISYIAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
|
|
| InsE |
COG2963 |
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; |
55-163 |
1.91e-07 |
|
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442203 [Multi-domain] Cd Length: 93 Bit Score: 48.77 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 55 TAKNNHYSDEFKLVVVRAVISDRLTMREAAARFNLSAEiLVRRWLDVYNDAGAEGllnmqcgrpgqmtkPKNIPPLTDKE 134
Cdd:COG2963 2 SKKRRRYSPEFKAEAVRLVLEGGASVAEVARELGISPS-TLYRWVRQYREGGLGG--------------FPGDGRTTPEQ 66
|
90 100
....*....|....*....|....*....
gi 1194622937 135 LEKlspEELRAELRYLRAENAYPKKVESL 163
Cdd:COG2963 67 AEI---RRLRKELRRLEMENDILKKAAAL 92
|
|
| InsE |
COG2963 |
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; |
1-80 |
1.89e-05 |
|
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442203 [Multi-domain] Cd Length: 93 Bit Score: 42.99 E-value: 1.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 1 MAKP--KYSPETKLAVVNHYLSGKDGEQSTADLFGIERTSVRRWVRAWQFHGAEGLTAKNNHYSDEFKLVVVRAVIsDRL 78
Cdd:COG2963 1 MSKKrrRYSPEFKAEAVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDGRTTPEQAEIRRLRKEL-RRL 79
|
..
gi 1194622937 79 TM 80
Cdd:COG2963 80 EM 81
|
|
| PRK14702 |
PRK14702 |
insertion element IS2 transposase InsD; Provisional |
230-449 |
4.82e-05 |
|
insertion element IS2 transposase InsD; Provisional
Pssm-ID: 237792 [Multi-domain] Cd Length: 262 Bit Score: 44.72 E-value: 4.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 230 YGYRRITLALRKQG-----LRINHKTVQRLMAELSLRSVIRAKKYRAWKGRTGEAApnilsrnfgASKANEKWVTDVTEF 304
Cdd:PRK14702 27 YGYRRVWALLRRQAeldgmPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVA---------VKESNQRWCSDGFEF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 305 PV-QGKKLYLSSVLDLFNREVIAYSLSERPV-MEMVNTMLDGAFPKLRPGDAPLLH----SDQGWHYRMRSYQERLKAHG 378
Cdd:PRK14702 98 CCdNGERLRVTFALDCCDREALHWAVTTGGFnSETVQDVMLGAVERRFGNDLPSSPvewlTDNGSCYRANETRQFARMLG 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1194622937 379 MTQSMSRKGNCLDNAVMENFFGTLKSECFYLREFRSVSALRKAVEDYIHYYNNERISLKLKGLSPVEYRTQ 449
Cdd:PRK14702 178 LEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQ 248
|
|
| PRK09409 |
PRK09409 |
IS2 transposase TnpB; Reviewed |
230-449 |
8.77e-05 |
|
IS2 transposase TnpB; Reviewed
Pssm-ID: 181829 [Multi-domain] Cd Length: 301 Bit Score: 44.32 E-value: 8.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 230 YGYRRITLALRKQG-----LRINHKTVQRLMAELSLRSVIRAKKYRAWKGRTGEAApnilsrnfgASKANEKWVTDVTEF 304
Cdd:PRK09409 66 YGYRRVWALLRRQAeldgmPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVA---------VKESNQRWCSDGFEF 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 305 PV-QGKKLYLSSVLDLFNREVIAYSLS-----ERPVMEMVNTMLDGAFPKLRPGDAPLLHSDQGWHYRMRSYQERLKAHG 378
Cdd:PRK09409 137 CCdNGERLRVTFALDCCDREALHWAVTtggfnSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLG 216
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1194622937 379 MTQSMSRKGNCLDNAVMENFFGTLKSECFYLREFRSVSALRKAVEDYIHYYNNERISLKLKGLSPVEYRTQ 449
Cdd:PRK09409 217 LEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQ 287
|
|
| HTH_28 |
pfam13518 |
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ... |
11-57 |
1.09e-04 |
|
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.
Pssm-ID: 463908 [Multi-domain] Cd Length: 52 Bit Score: 39.88 E-value: 1.09e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1194622937 11 KLAVVNHYLSGKDGEQsTADLFGIERTSVRRWVRAWQFHGAEGLTAK 57
Cdd:pfam13518 2 RLKIVLLALEGESIKE-AARLFGISRSTVYRWIRRYREGGLEGLLPR 47
|
|
| HTH_28 |
pfam13518 |
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ... |
65-112 |
2.32e-04 |
|
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.
Pssm-ID: 463908 [Multi-domain] Cd Length: 52 Bit Score: 38.73 E-value: 2.32e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1194622937 65 FKLVVVRAVISDRlTMREAAARFNLSAEiLVRRWLDVYNDAGAEGLLN 112
Cdd:pfam13518 1 ERLKIVLLALEGE-SIKEAARLFGISRS-TVYRWIRRYREGGLEGLLP 46
|
|
| transpos_IS630 |
NF033545 |
IS630 family transposase; |
66-196 |
3.02e-03 |
|
IS630 family transposase;
Pssm-ID: 468076 [Multi-domain] Cd Length: 298 Bit Score: 39.55 E-value: 3.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 66 KLVVVRAVISDRLTMREAAARFNLSAEIlVRRWLDVYNDAGAEGLLNMQcgRPGQmtkpkniPPltdkeleKLSPEELRA 145
Cdd:NF033545 1 RRARILLLAAEGLSITEIAERLGVSRST-VYRWLKRFNEGGLEGLLDKP--RPGR-------PR-------KLLSEQQAE 63
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1194622937 146 ELRYLRAENaypkkveslGSERKKWQKALIISELRHEH-------ALRDLLRAAGMSR 196
Cdd:NF033545 64 LLALLLEEP---------PEGAGHWTLRELAALLEEEFgveysrsTVRRLLKRLGLSP 112
|
|
| transpos_ISNCY_2 |
NF033594 |
ISNCY family transposase; The ISNCY insertion sequence family, as defined by ISFinder, encodes ... |
69-118 |
3.69e-03 |
|
ISNCY family transposase; The ISNCY insertion sequence family, as defined by ISFinder, encodes several apparently unrelated families of transposases. Members of this family resemble the transposases of ISNCY family elements such as IS1202, ISTde1, ISKpn21, and ISCARN1.
Pssm-ID: 468103 [Multi-domain] Cd Length: 367 Bit Score: 39.39 E-value: 3.69e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1194622937 69 VVRAVISDRLTMREAAARFNLSaEILVRRWLDVYNDAGAEGLLNMQCGRP 118
Cdd:NF033594 2 VIQKVVDGRLTVKEAAELLGLS-ERQVRRLLKRYREEGAAGLVHGNRGRP 50
|
|
| HTH_23 |
pfam13384 |
Homeodomain-like domain; |
9-54 |
4.76e-03 |
|
Homeodomain-like domain;
Pssm-ID: 433164 [Multi-domain] Cd Length: 50 Bit Score: 34.94 E-value: 4.76e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1194622937 9 ETKLAVVNHYLSGKDGEQsTADLFGIERTSVRRWVRAWQFHGAEGL 54
Cdd:pfam13384 5 RRRARALLLLAEGLSVKE-IAELLGVSRRTVYRWLKRYNEEGLEGL 49
|
|
| transpos_IS630 |
NF033545 |
IS630 family transposase; |
29-99 |
5.66e-03 |
|
IS630 family transposase;
Pssm-ID: 468076 [Multi-domain] Cd Length: 298 Bit Score: 38.78 E-value: 5.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622937 29 ADLFGIERTSVRRWVRAWQFHGAEGLTAKNNH-----YSDEFKLVVVRAVISDR------LTMREAAARFNLSAEIL--- 94
Cdd:NF033545 19 AERLGVSRSTVYRWLKRFNEGGLEGLLDKPRPgrprkLLSEQQAELLALLLEEPpegaghWTLRELAALLEEEFGVEysr 98
|
....*..
gi 1194622937 95 --VRRWL 99
Cdd:NF033545 99 stVRRLL 105
|
|
| |
