|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
9-357 |
6.21e-110 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 326.06 E-value: 6.21e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 9 EQIIGFLRQA-EAGMAVAEICRRGGFSDATFYKWRSKF-GGMEASDAKRLREL----EEENAKLKKLLAEAHLDMHALKS 82
Cdd:NF033516 1 EFKLEAVREVlEGGKSVAEVARELGISPSTLYRWRKKYrGGGEAADAGRLKELltpeEEENRRLKRELAELRLENEILKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 83 VlgGKALAPRAKREAISRLvqEHQLSERRACRLVGLSRDSY-----RHPPEADAATRELAARIVEIAHVRR-RFGYRRIH 156
Cdd:NF033516 81 A--RKLLRPAVKYALIDAL--RGEYSVRRACRVLGVSRSTYyywrkRPPSRRAPDDAELRARIREIFEESRgRYGYRRIT 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 157 DLLRPEFPGVNHKRVWRLYAAANLAV---RKRKKVRRPPAERVPLQ--------AARSVNEVWSMDFVSDSLANGRrLKC 225
Cdd:NF033516 157 ALLRREGIRVNHKRVYRLMRELGLLArrrRKRRPYTTDSGHVHPVApnllnrqfTATRPNQVWVTDITYIRTAEGW-LYL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 226 LTVADDFSHECVDIAVDYGISGEYVTRLLDRAAVFRGYPAAV--RTDNGPEFTSRAFIAWAQRHHIRHLLIEPGRPMQNG 303
Cdd:NF033516 236 AVVLDLFSREIVGWSVSTSMSAELVLDALEMAIEWRGKPEGLilHSDNGSQYTSKAYREWLKEHGITQSMSRPGNCWDNA 315
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1194648242 304 YIESFNGKFRDECLNEHWFQSLAQARQTIAAWRRDYNEVRPHSSIGRIAPARFA 357
Cdd:NF033516 316 VAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
61-364 |
5.04e-72 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 227.34 E-value: 5.04e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 61 EENAKLKKLLAEAHLDMHALKSVLGGKALAPRAKREAISRLVQEHQLSERRACRLVGLSRDSYRHPPEADAatrELAARI 140
Cdd:COG2801 1 ELAEEEELRKEEELLRRLLLLLRLLLLRRRVLRRVSRRRRRLLRLLRRRRARSRRRRRLRRPRSYRADEDA---ELLERI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 141 VEIAHVRRRFGYRRIHDLLRPEFPGVNHKRVWRLYAAANLAVRKRKKVRR--------PPAERVPLQAARsVNEVWSMDF 212
Cdd:COG2801 78 KEIFAESPRYGYRRITAELRREGIAVNRKRVRRLMRELGLQARRRRKKKYttysghggPIAPNLLFTATA-PNQVWVTDI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 213 VSDSLANGRrLKCLTVADDFSHECVDIAVDYGISGEYVTRLLDRAAVFRGY--PAAVRTDNGPEFTSRAFIAWAQRHHIR 290
Cdd:COG2801 157 TYIPTAEGW-LYLAAVIDLFSREIVGWSVSDSMDAELVVDALEMAIERRGPpkPLILHSDNGSQYTSKAYQELLKKLGIT 235
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1194648242 291 HLLIEPGRPMQNGYIESFNGKFRDECLNEHWFQSLAQARQTIAAWRRDYNEVRPHSSIGRIAPARFAEQQRRHA 364
Cdd:COG2801 236 QSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEYEKQLAAAA 309
|
|
| rve_3 |
pfam13683 |
Integrase core domain; |
289-353 |
1.08e-34 |
|
Integrase core domain;
Pssm-ID: 433402 [Multi-domain] Cd Length: 67 Bit Score: 122.32 E-value: 1.08e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1194648242 289 IRHLLIEPGRPMQNGYIESFNGKFRDECLNEHWFQSLAQARQTIAAWRRDYNEVRPHSSIGRIAP 353
Cdd:pfam13683 3 IEISYIAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
|
|
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
94-354 |
8.24e-31 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 118.46 E-value: 8.24e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 94 KREAISRLVQEHQLSERRACRLVGLSRDSY-----------------------RHPPEADAATRElaaRIVEIaHVRRRF 150
Cdd:NF033577 1 GRLELVRLVLEDGWSVREAARRFGISRKTVykwlkryraggeeglidrsrrphRSPRRTSPETEA---RILAL-RRELRL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 151 GYRRIHDLLRPEFPGVNHKRVWRLYAAANLAvrKRKKVRRPPAERVPLQAARSvNEVWSMDF--VSDsLANGRRLKCLTV 228
Cdd:NF033577 77 GPRRIAYELERQGPGVSRSTVHRILRRHGLS--RLRALDRKTGKVKRYERAHP-GELWHIDIkkLGR-IPDVGRLYLHTA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 229 ADDFS----HECVDIAvdygiSGEYVTRLLDRAAVFRGYP-AAVRTDNGPEFTSRA--FIAWAQRHHIRHLLIEPGRPMQ 301
Cdd:NF033577 153 IDDHSrfayAELYPDE-----TAETAADFLRRAFAEHGIPiRRVLTDNGSEFRSRAhgFELALAELGIEHRRTRPYHPQT 227
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1194648242 302 NGYIESFNGKFRDECLNEHWFQSLAQARQTIAAWRRDYNEVRPHSSIGRIAPA 354
Cdd:NF033577 228 NGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPA 280
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
117-354 |
8.15e-15 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 73.75 E-value: 8.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 117 GLSRDSYRH-------PPEADAATRE---LAARIVEI-AHVRRRFGYRRIHDLLRPEFPGVNHKRVWRLYAAANLAVRKR 185
Cdd:PHA02517 2 GIAPSTYYRcqqqrhhPDKRRARAQHddwLKSEILRVyDENHQVYGVRKVWRQLNREGIRVARCTVGRLMKELGLAGVLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 186 KKVRRPPAERVPLQ---------AARSVNEVWSMDFVSdsLANGRRLKCL-TVADDFSHECVDIAVDYGISGEYVTRLLD 255
Cdd:PHA02517 82 GKKVRTTISRKAVAapdrvnrqfVATRPNQLWVADFTY--VSTWQGWVYVaFIIDVFARRIVGWRVSSSMDTDFVLDALE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 256 RAAVFRGYPAAV--RTDNGPEFTSRAFIAWAQRHHIRHLLIEPGRPMQNGYIESFNGKFRDECLNEHWFQSLAQARQTIA 333
Cdd:PHA02517 160 QALWARGRPGGLihHSDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELATL 239
|
250 260
....*....|....*....|.
gi 1194648242 334 AWRRDYNEVRPHSSIGRIAPA 354
Cdd:PHA02517 240 EWVAWYNNRRLHERLGYTPPA 260
|
|
| transpos_IS21 |
NF033546 |
IS21 family transposase; |
100-360 |
8.77e-05 |
|
IS21 family transposase;
Pssm-ID: 468077 [Multi-domain] Cd Length: 296 Bit Score: 43.74 E-value: 8.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 100 RLVQEHQLSERRACRLVGLSRDSYR-----HPPEADAATRELAARIVEIAHVRRRfgyrrIHDLLR--PEFPGVNHKRVW 172
Cdd:NF033546 2 RLLFRQGLSIREIARELGISRNTVRkylrrAGLDEPPKYERRPPRPSKLDPFEPY-----IPDWLEahLRKPGVTATLLW 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 173 RLYAAANLA---------VRKRKKVRRPPAERVPLQ-AARSVNEV-WSMDFVSDSLANGRRLKCLTVADDFSHECVDIAV 241
Cdd:NF033546 77 EELRAEGYPgsystvrryVRRWRAEQGPAKVFVRLEhAPGEQAQVdFGEATVVVTGGTGKILHVFVAVLGYSRYTYVEAT 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 242 dYGISGEYVTRLLDRA-AVFRGYPAAVRTDN------------GPEFTsRAFIAWAQRHHIRHLLIEPGRPMQNGYIESF 308
Cdd:NF033546 157 -PSESQEDLLDGHQRAfEFFGGVPREIVYDNlktavdkrdryeEPRLN-PRFAAFAAHYGFEPRPCRPYRPQEKGKVERA 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1194648242 309 NGKFRDECLNE--HWFQSLAQARQTIAAWRRDYNEVRPHSSIGRIAPARFAEQQ 360
Cdd:NF033546 235 VGYVRRWFLRLrgRRFESLAELNAALAEWLAELANQRPHGTTGGSPAERFEEER 288
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
9-357 |
6.21e-110 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 326.06 E-value: 6.21e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 9 EQIIGFLRQA-EAGMAVAEICRRGGFSDATFYKWRSKF-GGMEASDAKRLREL----EEENAKLKKLLAEAHLDMHALKS 82
Cdd:NF033516 1 EFKLEAVREVlEGGKSVAEVARELGISPSTLYRWRKKYrGGGEAADAGRLKELltpeEEENRRLKRELAELRLENEILKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 83 VlgGKALAPRAKREAISRLvqEHQLSERRACRLVGLSRDSY-----RHPPEADAATRELAARIVEIAHVRR-RFGYRRIH 156
Cdd:NF033516 81 A--RKLLRPAVKYALIDAL--RGEYSVRRACRVLGVSRSTYyywrkRPPSRRAPDDAELRARIREIFEESRgRYGYRRIT 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 157 DLLRPEFPGVNHKRVWRLYAAANLAV---RKRKKVRRPPAERVPLQ--------AARSVNEVWSMDFVSDSLANGRrLKC 225
Cdd:NF033516 157 ALLRREGIRVNHKRVYRLMRELGLLArrrRKRRPYTTDSGHVHPVApnllnrqfTATRPNQVWVTDITYIRTAEGW-LYL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 226 LTVADDFSHECVDIAVDYGISGEYVTRLLDRAAVFRGYPAAV--RTDNGPEFTSRAFIAWAQRHHIRHLLIEPGRPMQNG 303
Cdd:NF033516 236 AVVLDLFSREIVGWSVSTSMSAELVLDALEMAIEWRGKPEGLilHSDNGSQYTSKAYREWLKEHGITQSMSRPGNCWDNA 315
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1194648242 304 YIESFNGKFRDECLNEHWFQSLAQARQTIAAWRRDYNEVRPHSSIGRIAPARFA 357
Cdd:NF033516 316 VAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
61-364 |
5.04e-72 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 227.34 E-value: 5.04e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 61 EENAKLKKLLAEAHLDMHALKSVLGGKALAPRAKREAISRLVQEHQLSERRACRLVGLSRDSYRHPPEADAatrELAARI 140
Cdd:COG2801 1 ELAEEEELRKEEELLRRLLLLLRLLLLRRRVLRRVSRRRRRLLRLLRRRRARSRRRRRLRRPRSYRADEDA---ELLERI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 141 VEIAHVRRRFGYRRIHDLLRPEFPGVNHKRVWRLYAAANLAVRKRKKVRR--------PPAERVPLQAARsVNEVWSMDF 212
Cdd:COG2801 78 KEIFAESPRYGYRRITAELRREGIAVNRKRVRRLMRELGLQARRRRKKKYttysghggPIAPNLLFTATA-PNQVWVTDI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 213 VSDSLANGRrLKCLTVADDFSHECVDIAVDYGISGEYVTRLLDRAAVFRGY--PAAVRTDNGPEFTSRAFIAWAQRHHIR 290
Cdd:COG2801 157 TYIPTAEGW-LYLAAVIDLFSREIVGWSVSDSMDAELVVDALEMAIERRGPpkPLILHSDNGSQYTSKAYQELLKKLGIT 235
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1194648242 291 HLLIEPGRPMQNGYIESFNGKFRDECLNEHWFQSLAQARQTIAAWRRDYNEVRPHSSIGRIAPARFAEQQRRHA 364
Cdd:COG2801 236 QSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEYEKQLAAAA 309
|
|
| rve_3 |
pfam13683 |
Integrase core domain; |
289-353 |
1.08e-34 |
|
Integrase core domain;
Pssm-ID: 433402 [Multi-domain] Cd Length: 67 Bit Score: 122.32 E-value: 1.08e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1194648242 289 IRHLLIEPGRPMQNGYIESFNGKFRDECLNEHWFQSLAQARQTIAAWRRDYNEVRPHSSIGRIAP 353
Cdd:pfam13683 3 IEISYIAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
|
|
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
94-354 |
8.24e-31 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 118.46 E-value: 8.24e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 94 KREAISRLVQEHQLSERRACRLVGLSRDSY-----------------------RHPPEADAATRElaaRIVEIaHVRRRF 150
Cdd:NF033577 1 GRLELVRLVLEDGWSVREAARRFGISRKTVykwlkryraggeeglidrsrrphRSPRRTSPETEA---RILAL-RRELRL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 151 GYRRIHDLLRPEFPGVNHKRVWRLYAAANLAvrKRKKVRRPPAERVPLQAARSvNEVWSMDF--VSDsLANGRRLKCLTV 228
Cdd:NF033577 77 GPRRIAYELERQGPGVSRSTVHRILRRHGLS--RLRALDRKTGKVKRYERAHP-GELWHIDIkkLGR-IPDVGRLYLHTA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 229 ADDFS----HECVDIAvdygiSGEYVTRLLDRAAVFRGYP-AAVRTDNGPEFTSRA--FIAWAQRHHIRHLLIEPGRPMQ 301
Cdd:NF033577 153 IDDHSrfayAELYPDE-----TAETAADFLRRAFAEHGIPiRRVLTDNGSEFRSRAhgFELALAELGIEHRRTRPYHPQT 227
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1194648242 302 NGYIESFNGKFRDECLNEHWFQSLAQARQTIAAWRRDYNEVRPHSSIGRIAPA 354
Cdd:NF033577 228 NGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPA 280
|
|
| rve |
pfam00665 |
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
204-299 |
7.33e-25 |
|
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.
Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 97.00 E-value: 7.33e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 204 VNEVWSMDFVSDSLAN-GRRLKCLTVADDFSHECVDIAVDYGISGEYVTRLLDRAAVFRGY-PAAVRTDNGPEFTSRAFI 281
Cdd:pfam00665 1 PNQLWQGDFTYIRIPGgGGKLYLLVIVDDFSREILAWALSSEMDAELVLDALERAIAFRGGvPLIIHSDNGSEYTSKAFR 80
|
90
....*....|....*...
gi 1194648242 282 AWAQRHHIRHLLIEPGRP 299
Cdd:pfam00665 81 EFLKDLGIKPSFSRPGNP 98
|
|
| HTH_Tnp_1 |
pfam01527 |
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ... |
2-71 |
6.72e-17 |
|
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.
Pssm-ID: 426308 [Multi-domain] Cd Length: 75 Bit Score: 74.70 E-value: 6.72e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1194648242 2 RKSKFSEEQIIGFLRQA-EAGMAVAEICRRGGFSDATFYKWRSKF-GGMEASDAK-RLRELEEENAKLKKLLA 71
Cdd:pfam01527 3 KRRRFSEEFKLRAVKEVlEPGRTVKEVARRHGVSPNTLYQWRRQYeGGMGASPARpRLTALEEENRRLKRELA 75
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
117-354 |
8.15e-15 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 73.75 E-value: 8.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 117 GLSRDSYRH-------PPEADAATRE---LAARIVEI-AHVRRRFGYRRIHDLLRPEFPGVNHKRVWRLYAAANLAVRKR 185
Cdd:PHA02517 2 GIAPSTYYRcqqqrhhPDKRRARAQHddwLKSEILRVyDENHQVYGVRKVWRQLNREGIRVARCTVGRLMKELGLAGVLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 186 KKVRRPPAERVPLQ---------AARSVNEVWSMDFVSdsLANGRRLKCL-TVADDFSHECVDIAVDYGISGEYVTRLLD 255
Cdd:PHA02517 82 GKKVRTTISRKAVAapdrvnrqfVATRPNQLWVADFTY--VSTWQGWVYVaFIIDVFARRIVGWRVSSSMDTDFVLDALE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 256 RAAVFRGYPAAV--RTDNGPEFTSRAFIAWAQRHHIRHLLIEPGRPMQNGYIESFNGKFRDECLNEHWFQSLAQARQTIA 333
Cdd:PHA02517 160 QALWARGRPGGLihHSDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELATL 239
|
250 260
....*....|....*....|.
gi 1194648242 334 AWRRDYNEVRPHSSIGRIAPA 354
Cdd:PHA02517 240 EWVAWYNNRRLHERLGYTPPA 260
|
|
| PRK14702 |
PRK14702 |
insertion element IS2 transposase InsD; Provisional |
150-360 |
7.31e-09 |
|
insertion element IS2 transposase InsD; Provisional
Pssm-ID: 237792 [Multi-domain] Cd Length: 262 Bit Score: 56.28 E-value: 7.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 150 FGYRRIHDLLRPE-----FPGVNHKRVWRLYAAANLAVRKRKKVrrPPAERVPLQ--AARSVNEVWSMDFVSDSLANGRR 222
Cdd:PRK14702 27 YGYRRVWALLRRQaeldgMPAINAKRVYRLMRQNALLLERKPAV--PPSKRAHTGrvAVKESNQRWCSDGFEFCCDNGER 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 223 LKCLTVADDFSHECVDIAVDY-GISGEYVTRLLDRAAVFR------GYPAAVRTDNGpeftsRAFIAWAQRHHIRHLLIE 295
Cdd:PRK14702 105 LRVTFALDCCDREALHWAVTTgGFNSETVQDVMLGAVERRfgndlpSSPVEWLTDNG-----SCYRANETRQFARMLGLE 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 296 PGR-----PMQNGYIESFNGKFRDECLNEHWFQSLAQARQTIAAWRRDYNEVRPHSSIGRIAPARFAEQQ 360
Cdd:PRK14702 180 PKNtavrsPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQR 249
|
|
| PRK09409 |
PRK09409 |
IS2 transposase TnpB; Reviewed |
150-360 |
1.36e-08 |
|
IS2 transposase TnpB; Reviewed
Pssm-ID: 181829 [Multi-domain] Cd Length: 301 Bit Score: 55.49 E-value: 1.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 150 FGYRRIHDLLRPE-----FPGVNHKRVWRLYAAANLAVRKRKKVrrPPAERVPLQ--AARSVNEVWSMDFVSDSLANGRR 222
Cdd:PRK09409 66 YGYRRVWALLRRQaeldgMPAINAKRVYRIMRQNALLLERKPAV--PPSKRAHTGrvAVKESNQRWCSDGFEFCCDNGER 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 223 LKCLTVADDFSHECVDIAVDYG-ISGEYVTRLLDRAAVFR------GYPAAVRTDNGpeftsRAFIAWAQRHHIRHLLIE 295
Cdd:PRK09409 144 LRVTFALDCCDREALHWAVTTGgFNSETVQDVMLGAVERRfgndlpSSPVEWLTDNG-----SCYRANETRQFARMLGLE 218
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 296 PGR-----PMQNGYIESFNGKFRDECLNEHWFQSLAQARQTIAAWRRDYNEVRPHSSIGRIAPARFAEQQ 360
Cdd:PRK09409 219 PKNtavrsPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQR 288
|
|
| HTH_21 |
pfam13276 |
HTH-like domain; This domain contains a predicted helix-turn-helix suggesting a DNA-binding ... |
134-187 |
2.41e-07 |
|
HTH-like domain; This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.
Pssm-ID: 463824 [Multi-domain] Cd Length: 60 Bit Score: 47.18 E-value: 2.41e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1194648242 134 RELAARIVEIAHV-RRRFGYRRIHDLLRPEFPG-VNHKRVWRLYAAANLAVRKRKK 187
Cdd:pfam13276 4 DELLEAIREIFEEsRGTYGYRRITAELRREGGIrVNRKRVARLMRELGLRARRRRK 59
|
|
| transpos_IS21 |
NF033546 |
IS21 family transposase; |
100-360 |
8.77e-05 |
|
IS21 family transposase;
Pssm-ID: 468077 [Multi-domain] Cd Length: 296 Bit Score: 43.74 E-value: 8.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 100 RLVQEHQLSERRACRLVGLSRDSYR-----HPPEADAATRELAARIVEIAHVRRRfgyrrIHDLLR--PEFPGVNHKRVW 172
Cdd:NF033546 2 RLLFRQGLSIREIARELGISRNTVRkylrrAGLDEPPKYERRPPRPSKLDPFEPY-----IPDWLEahLRKPGVTATLLW 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 173 RLYAAANLA---------VRKRKKVRRPPAERVPLQ-AARSVNEV-WSMDFVSDSLANGRRLKCLTVADDFSHECVDIAV 241
Cdd:NF033546 77 EELRAEGYPgsystvrryVRRWRAEQGPAKVFVRLEhAPGEQAQVdFGEATVVVTGGTGKILHVFVAVLGYSRYTYVEAT 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 242 dYGISGEYVTRLLDRA-AVFRGYPAAVRTDN------------GPEFTsRAFIAWAQRHHIRHLLIEPGRPMQNGYIESF 308
Cdd:NF033546 157 -PSESQEDLLDGHQRAfEFFGGVPREIVYDNlktavdkrdryeEPRLN-PRFAAFAAHYGFEPRPCRPYRPQEKGKVERA 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1194648242 309 NGKFRDECLNE--HWFQSLAQARQTIAAWRRDYNEVRPHSSIGRIAPARFAEQQ 360
Cdd:NF033546 235 VGYVRRWFLRLrgRRFESLAELNAALAEWLAELANQRPHGTTGGSPAERFEEER 288
|
|
| Tra8 |
COG2826 |
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons]; |
19-364 |
1.32e-04 |
|
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
Pssm-ID: 442074 [Multi-domain] Cd Length: 325 Bit Score: 43.33 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 19 EAGMAVAEICRRGGFSDATFYKWRSKFGGMEASDAKRLRELEEENAK----LKKLLAEAHLDMHALKSVLggKALAPrak 94
Cdd:COG2826 20 KAGLSVREIARRLGRSPSTISRELKRNSGRRGYRAEGAQRLAEDRRRrpkrKRKLATTPELRAYVEEKLR--KKWSP--- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 95 rEAIS-RLVQEHQLSERracrlvgLSRDS-YRHPpEADAATRELaariveIAHVRRRFGYRRIHdllrpefpgvnhkrvw 172
Cdd:COG2826 95 -EQIAgRLKREDDPGMR-------VSHETiYRYI-YAGGLRKDL------YRPLRRKRKRRRPR---------------- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 173 rlyaAANLAVRKRKKVRRPPAERvPLQAA-RSVNEVWSMDFVSdslanGRRLKC--LTVADDFSHECVDIAVDyGISGEY 249
Cdd:COG2826 144 ----GRTRKRRGKIPDRRSISER-PAEVEdRAEPGHWEGDLII-----GKRGKSalLTLVERKSRFVILLKLP-DKTAES 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 250 VTRLLDRAavFRGYPAAVR----TDNGPEFTSRAFIAwaQRHHIRHLLIEPGRPMQNGYIESFNGKFRDECLNEHWFQSL 325
Cdd:COG2826 213 VADALIRL--LRKLPAFLRksitTDNGKEFADHKEIE--AALGIKVYFADPYSPWQRGTNENTNGLLRQYFPKGTDFSTV 288
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1194648242 326 AQarQTIAAWRRDYNEvRPHSSIGRIAPA-RFAEQQRRHA 364
Cdd:COG2826 289 TQ--EELDAIADRLNN-RPRKCLGYKTPAeVFAEELAALA 325
|
|
| InsE |
COG2963 |
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; |
2-81 |
9.41e-04 |
|
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442203 [Multi-domain] Cd Length: 93 Bit Score: 37.98 E-value: 9.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194648242 2 RKSKFSEEQIIGFLRQA-EAGMAVAEICRRGGFSDATFYKWRSKF---GGMEASDAKRLRELEEENAKLKKLLAEAHLDM 77
Cdd:COG2963 4 KRRRYSPEFKAEAVRLVlEGGASVAEVARELGISPSTLYRWVRQYregGLGGFPGDGRTTPEQAEIRRLRKELRRLEMEN 83
|
....
gi 1194648242 78 HALK 81
Cdd:COG2963 84 DILK 87
|
|
| rve_2 |
pfam13333 |
Integrase core domain; |
306-359 |
4.69e-03 |
|
Integrase core domain;
Pssm-ID: 372570 [Multi-domain] Cd Length: 52 Bit Score: 34.93 E-value: 4.69e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1194648242 306 ESFNGKFRDECLNEHWFQSLAQARQTIAAWRRDYNEVRphssIGRIAPARFAEQ 359
Cdd:pfam13333 1 ESFFGSLKTEMVYGEHFKTLEELELAIFDYIEWYNNKR----LKGLSPVQYRNQ 50
|
|
| |
