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Conserved domains on  [gi|1196854646|ref|WP_086300261|]
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DUF1140 family protein [Enterococcus faecium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1140 super family cl05891
Protein of unknown function (DUF1140); This family consists of several short, hypothetical ...
 2-100 1.09e-18

Protein of unknown function (DUF1140); This family consists of several short, hypothetical phage and bacterial proteins. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam06600:

Pssm-ID: 429025  Cd Length: 99  Bit Score: 73.95  E-value: 1.09e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196854646   2 DLITQYSDIILKKIMAKIQKDKKSKERAELVKLEMAETGAGVRSSRHWKAAANIEFYYNEIQKGFDQMRELDRQTNWSKK 81
Cdd:pfam06600   1 DIVKNRLHKILKDIFKEIDNLFKKKENADICAEKIAENGKCDGTNAYWKAQENADASIKEISFKLHQLAEIDRLFHWSDH 80

                          90
                  ....*....|....*....
gi 1196854646  82 LHQDRFKFVEKYREILNEY 100
Cdd:pfam06600  81 LHQDQLKFVSDYPAVLEEL 99
 
Name Accession Description Interval E-value
DUF1140 pfam06600
Protein of unknown function (DUF1140); This family consists of several short, hypothetical ...
 2-100 1.09e-18

Protein of unknown function (DUF1140); This family consists of several short, hypothetical phage and bacterial proteins. The function of this family is unknown.


Pssm-ID: 429025  Cd Length: 99  Bit Score: 73.95  E-value: 1.09e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196854646   2 DLITQYSDIILKKIMAKIQKDKKSKERAELVKLEMAETGAGVRSSRHWKAAANIEFYYNEIQKGFDQMRELDRQTNWSKK 81
Cdd:pfam06600   1 DIVKNRLHKILKDIFKEIDNLFKKKENADICAEKIAENGKCDGTNAYWKAQENADASIKEISFKLHQLAEIDRLFHWSDH 80

                          90
                  ....*....|....*....
gi 1196854646  82 LHQDRFKFVEKYREILNEY 100
Cdd:pfam06600  81 LHQDQLKFVSDYPAVLEEL 99
 
Name Accession Description Interval E-value
DUF1140 pfam06600
Protein of unknown function (DUF1140); This family consists of several short, hypothetical ...
 2-100 1.09e-18

Protein of unknown function (DUF1140); This family consists of several short, hypothetical phage and bacterial proteins. The function of this family is unknown.


Pssm-ID: 429025  Cd Length: 99  Bit Score: 73.95  E-value: 1.09e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196854646   2 DLITQYSDIILKKIMAKIQKDKKSKERAELVKLEMAETGAGVRSSRHWKAAANIEFYYNEIQKGFDQMRELDRQTNWSKK 81
Cdd:pfam06600   1 DIVKNRLHKILKDIFKEIDNLFKKKENADICAEKIAENGKCDGTNAYWKAQENADASIKEISFKLHQLAEIDRLFHWSDH 80

                          90
                  ....*....|....*....
gi 1196854646  82 LHQDRFKFVEKYREILNEY 100
Cdd:pfam06600  81 LHQDQLKFVSDYPAVLEEL 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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