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Conserved domains on  [gi|1196980937|ref|WP_086401289|]
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MULTISPECIES: helix-turn-helix transcriptional regulator [Bacillus]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 10601889)

helix-turn-helix (HTH) domain-containing protein with an XRE (Xenobiotic Response Element) family HTH domain, binds DNA and may function as a transcriptional regulator

CATH:  1.10.10.10
Gene Ontology:  GO:0003677
PubMed:  15808743|2644244|8831795
SCOP:  4000362

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_26 pfam13443
Cro/C1-type HTH DNA-binding domain; This is a helix-turn-helix domain that probably binds to ...
 505-542 2.02e-04

Cro/C1-type HTH DNA-binding domain; This is a helix-turn-helix domain that probably binds to DNA.


:

Pssm-ID: 433211 [Multi-domain]  Cd Length: 63  Bit Score: 39.45  E-value: 2.02e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1196980937 505 KNITMRELSKEIGISQPTLSRFYNKKTKRLSGTAKDKL 542
Cdd:pfam13443   9 RGISKSDLARATGISRATLSRLRKGKPKRVSLDTLDKI 46
 
Name Accession Description Interval E-value
HTH_26 pfam13443
Cro/C1-type HTH DNA-binding domain; This is a helix-turn-helix domain that probably binds to ...
 505-542 2.02e-04

Cro/C1-type HTH DNA-binding domain; This is a helix-turn-helix domain that probably binds to DNA.


Pssm-ID: 433211 [Multi-domain]  Cd Length: 63  Bit Score: 39.45  E-value: 2.02e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1196980937 505 KNITMRELSKEIGISQPTLSRFYNKKTKRLSGTAKDKL 542
Cdd:pfam13443   9 RGISKSDLARATGISRATLSRLRKGKPKRVSLDTLDKI 46
YozG COG3655
DNA-binding transcriptional regulator, XRE family [Transcription];
505-535 2.60e-04

DNA-binding transcriptional regulator, XRE family [Transcription];


Pssm-ID: 442872 [Multi-domain]  Cd Length: 69  Bit Score: 39.36  E-value: 2.60e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1196980937 505 KNITMRELSKEIGISQPTLSRFYNKKTKRLS 535
Cdd:COG3655    13 RGMTKKELAEATGISRATLSRLKNGKAKAVR 43
 
Name Accession Description Interval E-value
HTH_26 pfam13443
Cro/C1-type HTH DNA-binding domain; This is a helix-turn-helix domain that probably binds to ...
 505-542 2.02e-04

Cro/C1-type HTH DNA-binding domain; This is a helix-turn-helix domain that probably binds to DNA.


Pssm-ID: 433211 [Multi-domain]  Cd Length: 63  Bit Score: 39.45  E-value: 2.02e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1196980937 505 KNITMRELSKEIGISQPTLSRFYNKKTKRLSGTAKDKL 542
Cdd:pfam13443   9 RGISKSDLARATGISRATLSRLRKGKPKRVSLDTLDKI 46
YozG COG3655
DNA-binding transcriptional regulator, XRE family [Transcription];
505-535 2.60e-04

DNA-binding transcriptional regulator, XRE family [Transcription];


Pssm-ID: 442872 [Multi-domain]  Cd Length: 69  Bit Score: 39.36  E-value: 2.60e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1196980937 505 KNITMRELSKEIGISQPTLSRFYNKKTKRLS 535
Cdd:COG3655    13 RGMTKKELAEATGISRATLSRLKNGKAKAVR 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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