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Conserved domains on  [gi|1196988633|ref|WP_086407079|]
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MULTISPECIES: DUF1904 family protein [Bacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1904 super family cl46821
Domain of unknown function (DUF1904); This domain is found in a set of hypothetical bacterial ...
 2-107 6.03e-29

Domain of unknown function (DUF1904); This domain is found in a set of hypothetical bacterial proteins.


The actual alignment was detected with superfamily member pfam08921:

Pssm-ID: 481161  Cd Length: 107  Bit Score: 100.50  E-value: 6.03e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196988633   2 PHVVFRGITTEQLKHISKPLVEELAEICECGTDNFTLELPSSTFVFNGEEIEAFPLIEVKWFERGQEIRDRFAKAITTYV 81
Cdd:pfam08921   1 PHLRIRGIEEEKVAELSKKLINELAAIIKTPREAFTIELINSQFFRDGKIDDRYPFVEVLWFPRDQEVQDLVAQTITNQI 80

                          90       100
                  ....*....|....*....|....*..
gi 1196988633  82 MDF-GLPEVEVVFTVFTGSAYYINGKH 107
Cdd:pfam08921  81 GRInGYEDVAVMFTTLTKSAYYENGQH 107
 
Name Accession Description Interval E-value
DUF1904 pfam08921
Domain of unknown function (DUF1904); This domain is found in a set of hypothetical bacterial ...
 2-107 6.03e-29

Domain of unknown function (DUF1904); This domain is found in a set of hypothetical bacterial proteins.


Pssm-ID: 430319  Cd Length: 107  Bit Score: 100.50  E-value: 6.03e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196988633   2 PHVVFRGITTEQLKHISKPLVEELAEICECGTDNFTLELPSSTFVFNGEEIEAFPLIEVKWFERGQEIRDRFAKAITTYV 81
Cdd:pfam08921   1 PHLRIRGIEEEKVAELSKKLINELAAIIKTPREAFTIELINSQFFRDGKIDDRYPFVEVLWFPRDQEVQDLVAQTITNQI 80

                          90       100
                  ....*....|....*....|....*..
gi 1196988633  82 MDF-GLPEVEVVFTVFTGSAYYINGKH 107
Cdd:pfam08921  81 GRInGYEDVAVMFTTLTKSAYYENGQH 107
 
Name Accession Description Interval E-value
DUF1904 pfam08921
Domain of unknown function (DUF1904); This domain is found in a set of hypothetical bacterial ...
 2-107 6.03e-29

Domain of unknown function (DUF1904); This domain is found in a set of hypothetical bacterial proteins.


Pssm-ID: 430319  Cd Length: 107  Bit Score: 100.50  E-value: 6.03e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196988633   2 PHVVFRGITTEQLKHISKPLVEELAEICECGTDNFTLELPSSTFVFNGEEIEAFPLIEVKWFERGQEIRDRFAKAITTYV 81
Cdd:pfam08921   1 PHLRIRGIEEEKVAELSKKLINELAAIIKTPREAFTIELINSQFFRDGKIDDRYPFVEVLWFPRDQEVQDLVAQTITNQI 80

                          90       100
                  ....*....|....*....|....*..
gi 1196988633  82 MDF-GLPEVEVVFTVFTGSAYYINGKH 107
Cdd:pfam08921  81 GRInGYEDVAVMFTTLTKSAYYENGQH 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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